Citrus Sinensis ID: 007805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFCQ
Secondary Structure (PSIPRED)
cccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccHHHHHcccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccEEcccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEEEccccccccccccEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEEEEEccccccHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccEHHHHccccccccHHHcccHHHHHHHHHHHcccccEEEEEccEEEcHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHcccccEEEccccHHHHHHHHHHHHHHccHccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
maaprvtmevgnDGVAIITlinppvnalaIPIVAGLkdkfeeatsrddVKAIVLTgnggrfsggfdiNVFQkvhgagdvslmpDVSVELVVNLIEDCKKPIVAAVEGLALggglelamgchariaapktqlglpeltlgvipgfggtqrlprLVGLSKAIEMMLLSKsitseegwkLGLIDAVVTSEELLKVSRLWALDIAARRKpwirslhrtdklgsLSEAREVLKLARLQAkktapnmpqhqACLDVIEegivhggysGVLKEAKVFKELVMLDTSRGLVHVFFAQratskvpnvtdiglkprgvRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGvldysefkdVDMVIEAVIESVPLKQKIFSELekacpphcilatntstidlnivgektssqdriigahffspahvmpLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVgnctgfavnraffpysQSARLLVSLGVDvfridsairsfglpigpfqlldlagygvaaatskefdkafpdrsfqsPLVDLLLKsgrngnkgfSFLFVFSLFCQ
Flexible Loop (DISEMBL)
maaprvtmevgnDGVAIITLINPPVNALAIPIVAGLKDKFeeatsrddvKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSksitseegwKLGLIDAVVTSEELLKVSRLWALdiaarrkpwirslhrtdklgslseAREVLKLARLQakktapnmpQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFaqratskvpnvtdiglkprgVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIeanvrglvtrgkltqdkaNNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFCQ
Low Complexity Region (SEG)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIvaaveglalggglelaMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTvgkiikkvpvvvgNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFCQ
Disordered region (IsUnstruct)
*********VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL****EVLKLAR************HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFC*
Disordered Region (DISOPRED)
***PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG********DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA*********************REVLKL**********NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT*************RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV******************KMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFC*
Disordered Region (DISEMBL)
********EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFCQ
Disordered Region (DISPRO)
**APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVFSLFCQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	589	2.2.26 [Sep-21-2011]
Q9ZPI6	721	Peroxisomal fatty acid be	yes	no	0.966	0.789	0.752	0.0
Q8W1L6	726	Peroxisomal fatty acid be	yes	no	0.988	0.801	0.716	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.979	0.795	0.607	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.977	0.794	0.605	0.0
Q9ZPI5	725	Peroxisomal fatty acid be	no	no	0.976	0.793	0.606	0.0
Q6NYL3	718	Peroxisomal bifunctional	yes	no	0.943	0.774	0.369	4e-88
A8A2L0	714	Fatty acid oxidation comp	yes	no	0.966	0.796	0.338	5e-85
Q08426	723	Peroxisomal bifunctional	yes	no	0.925	0.753	0.347	7e-84
Q5R5M8	723	Peroxisomal bifunctional	yes	no	0.925	0.753	0.347	1e-83
Q8FFG4	714	Fatty acid oxidation comp	yes	no	0.967	0.798	0.333	6e-80

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/569 (75%), Positives = 504/569 (88%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct: 7   VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67  DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
             ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
           AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
           QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
           VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query: 546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNG 574
               + K + DR F+SP+ +LLLKSGRNG
Sbjct: 547 VGPIYAKVYGDRMFRSPMTELLLKSGRNG 575

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/582 (71%), Positives = 488/582 (83%)

Query: 3   APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct: 4   AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64  GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
           + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
           QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
           LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
            LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
           PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           A A    +  AF  R+  S LVDL++++GR G       +++
Sbjct: 544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLY 585

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/581 (60%), Positives = 456/581 (78%), Gaps = 4/581 (0%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct: 5   AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query: 62  SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP VAA++GLALGGGLE+AM C
Sbjct: 65  SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLK---SGRNGNKGF 578
           GVAAAT+ +F +AFP+R+++S L+ L+ +   +G +  KGF
Sbjct: 545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/581 (60%), Positives = 452/581 (77%), Gaps = 5/581 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGF
Sbjct: 9   TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68

Query: 66  DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
           DI+ F ++  G      +  +S++++ +L+E  KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69  DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           +AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188

Query: 185 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
              ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM   
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
             CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL 
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308

Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           PR + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           +++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAA 544
           VVGNCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA 
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAI 548

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
           AT+ +F + FP+R+++S ++ L+ +  R G    KGF +L+
Sbjct: 549 ATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF-YLY 588

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/584 (60%), Positives = 450/584 (77%), Gaps = 9/584 (1%)

Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP VAA++GLALGGGLELAM CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
            PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
           VA AT+ +F + F +R+++S ++ L+ +  R G    KGF +L+
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF-YLY 588

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1

 Score =  325 bits (834), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 321/593 (54%), Gaps = 37/593 (6%)

Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI 
Sbjct: 5   ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            F     AG +   P V +   ++ IE  +KP+VAA+EG+ALGGG ELA+ CH RIA  K
Sbjct: 65  EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D V T + 
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175

Query: 189 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 246
             +V+  +AL      KP   S  R   L +        + + A +Q +K A  +    A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231

Query: 247 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 302
           C+  +    +   YS G+ +E ++   L     ++ L + FFAQR   K  +P+      
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
            KPR ++  AVIG G MG GI  +  L  + + +  V SE  L  ++T    V G++ R 
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              +   + +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
            V VGNC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524

Query: 543 AAATSKE-------FDKAFPDRSFQ----SPLVDLLLKSGRNGNKGFSFLFVF 584
                KE        D   P R  Q     P+ D++ + GR G K     +++
Sbjct: 525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMY 577

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  315 bits (808), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 199/588 (33%), Positives = 309/588 (52%), Gaps = 19/588 (3%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  
Sbjct: 8   TLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+      A +   +     +L+   I     P++AA+ G  LGGGLELA+ CH R
Sbjct: 68  GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  
Sbjct: 187 DVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  L+V+E G+  G  SG   EA+ F EL M   S+ L  +FFA     K P   
Sbjct: 243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPGSD 302

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 358
                P  +  V ++GGGLMG+GIA        + V +K++N + +   +K     + G 
Sbjct: 303 ---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQLEGK 359

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
           V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I
Sbjct: 360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
            A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   + + K 
Sbjct: 420 FASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 538
             K P+VV +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  
Sbjct: 480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEV 539

Query: 539 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGNKGFSFLFVF 584
           G           + A+ +R F +P  +V  +L   R G K     +++
Sbjct: 540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLY 586

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3

 Score =  311 bits (798), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 204/587 (34%), Positives = 314/587 (53%), Gaps = 42/587 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F 
Sbjct: 8   HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G       +++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    G+ KE ++F  L+    +R L + FFA+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGNK 576
           V   + K      P            +R +  P+ D+L + GR G K
Sbjct: 529 VGWKSRKGQGLTGPTLLPGTPARKRGNRRY-CPIPDVLCELGRFGQK 574

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1

 Score =  310 bits (795), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 204/587 (34%), Positives = 313/587 (53%), Gaps = 42/587 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F 
Sbjct: 8   HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G        ++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    GV KE ++F  L     +R L + F A+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGNK 576
           V   + K      P            +R +  P+ D+L + GR G K
Sbjct: 529 VGWKSRKGQGLTGPTLPPGTPARKRGNRRY-CPIPDVLCELGRFGQK 574

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8FFG4|FADJ_ECOL6 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fadJ PE=3 SV=1

 Score =  298 bits (764), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 196/587 (33%), Positives = 304/587 (51%), Gaps = 17/587 (2%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +A+IT+  P   +N L     + ++   ++     D++ +V ++     F  
Sbjct: 8   TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKDLRGVVFISAKPDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+      A +   +     +L+   I     P++AA+ G  LGGGLELA+ CH R
Sbjct: 68  GADINMIANCKTAQEAEALARQGQQLMAE-IHALPVPVIAAIHGACLGGGLELALACHGR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL+     A+++A + +P  R L   +++  G L  A     + +   +KT  
Sbjct: 187 DVVPHSILLEA----AVELAKQDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEQKTQG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  LDVIE G+  G  SG   EA+ F EL M   S+ L ++FFA     K P  +
Sbjct: 243 NYPATKRILDVIETGLAQGTSSGYDAEARAFGELAMTPQSQALRNIFFASTEVKKDPG-S 301

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           D    P     +   G    G    TA     + V +K++N + +   +K     + G V
Sbjct: 302 DAPPAPLNSVGILGGGLMGGGIAYVTA-CKAGLPVRIKDINPQGINHALKYSWDQLEGKV 360

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I 
Sbjct: 361 RRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIF 420

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   + + K  
Sbjct: 421 ASNTSSLPIADIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQ 480

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
            K P+VV +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G
Sbjct: 481 GKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGNKGFSFLFVF 584
                      + A+ +R F +P  +V  +L   R G K     +++
Sbjct: 541 IDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLY 586

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
224142159	726	predicted protein [Populus trichocarpa]	0.991	0.804	0.830	0.0
225445200	724	PREDICTED: peroxisomal fatty acid beta-o	0.991	0.806	0.784	0.0
315419009	721	MFP [Gossypium hirsutum]	0.991	0.809	0.803	0.0
406365505	724	cinnamoyl-CoA hydratase-dehydrogenase [P	0.991	0.806	0.789	0.0
255546439	724	3-hydroxyacyl-CoA dehyrogenase, putative	0.991	0.806	0.792	0.0
449443155	724	PREDICTED: peroxisomal fatty acid beta-o	0.991	0.806	0.763	0.0
449515444	719	PREDICTED: peroxisomal fatty acid beta-o	0.983	0.805	0.756	0.0
356520511	724	PREDICTED: peroxisomal fatty acid beta-o	0.991	0.806	0.777	0.0
357500631	722	Peroxisomal fatty acid beta-oxidation mu	0.988	0.806	0.765	0.0
356531273	724	PREDICTED: peroxisomal fatty acid beta-o	0.991	0.806	0.765	0.0

>gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/584 (83%), Positives = 534/584 (91%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1   MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH  GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID  I SFGLP+GP+QL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  AFPDR+FQSPL+ LL+KSGRNG       +++
Sbjct: 541 GVALAVEKEFANAFPDRTFQSPLIHLLVKSGRNGKTNGKGYYIY 584

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera]

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/584 (78%), Positives = 524/584 (89%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+   VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA  R+DVKAIV+TG GGR
Sbjct: 1   MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH   D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61  FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPEL+LGV+PGFGGTQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLKVSR WALDI  +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKA  AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K+PVVVG+CTGFAVNR FFPY+Q A  LV+LGVD FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  AF  R+F+SPLV+LLLK+GRNG +     +++
Sbjct: 541 GVAVAVGKEFATAFQGRTFESPLVNLLLKNGRNGKQNGKGYYIY 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum]

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/585 (80%), Positives = 524/585 (89%), Gaps = 1/585 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+  +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1   MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61  FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+TQLGLPEL+LGVIPGFGGTQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVS  WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL  
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGK+T+DKA  AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KVPVVVGNCTGFAVNR FFPY+Q   LLVSLGV D +RID  I +FG P+GPFQL DLAG
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQLQDLAG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           YGVA A  +E+ KAF DR F+SPL++LL K GRNG       +++
Sbjct: 541 YGVAFAVGQEYAKAFSDRIFKSPLLELLAKDGRNGKNNGKGYYIY 585

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/584 (78%), Positives = 517/584 (88%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA  +VTMEVG DGVA+IT+ NPPVNALAIPI+  LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1   MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+ QLGLPEL+LGV+PGFGGTQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA  L+N +VVLKE+NSEYL KG+K IEANVRGLV 
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP QL DL GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQLQDLTGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  AF DR+F+SPL+DLL+KSGRNG       +++
Sbjct: 541 GVAVAVGKEFGSAFSDRTFKSPLIDLLIKSGRNGKNNGKGFYIY 584

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/584 (79%), Positives = 518/584 (88%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA  R DV+AIVLTG  GR
Sbjct: 1   MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI APKTQLGLPEL+LG+IPGFGGTQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           D +V+S+ELLKVSR WALDI  RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID  I +FGLP+GP QL DLAGY
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  AFPDR+F+SPLVDLL+KSGRNG       +++
Sbjct: 541 GVAVAVGKEFATAFPDRTFKSPLVDLLIKSGRNGKNNGKGYYIY 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/584 (76%), Positives = 505/584 (86%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF+QR  SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+G       +++
Sbjct: 541 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIY 584

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/584 (75%), Positives = 500/584 (85%), Gaps = 5/584 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF       VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 535

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+G       +++
Sbjct: 536 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIY 579

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/584 (77%), Positives = 513/584 (87%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLK SRLWAL+I  RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID  I +FG PIGPFQL DLAGY
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNG       +++
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIY 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula]

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/584 (76%), Positives = 507/584 (86%), Gaps = 2/584 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA+ +V  EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA  R+DVKAIVLTG GGR
Sbjct: 1   MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAPK QLGLPELTLG+IPGFGGTQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+  ELLK+SR WAL+IA +R+PWIRSLH TDKLGS  +AREVL+ AR   KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR  SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KLTQ KA  AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPY+Q A  L +LGVDVFRID  I +FGLP+GPFQL DL+GY
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQLQDLSGY 538

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA A  KEF  +F  R+F +PL+DLL+KSGRNG       +++
Sbjct: 539 GVAVAVGKEFAGSFAGRTFPTPLLDLLIKSGRNGKNNGKGYYIY 582

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531273|ref|XP_003534202.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/584 (76%), Positives = 513/584 (87%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAV GLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG KLGLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELL  SRLWAL+I  R KPW+RSLHRTDK+GSLSEAREVL+ AR Q KKT P+
Sbjct: 181 DAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ  AC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DT++GL++VFF+QRA SKVP VTD
Sbjct: 241 LPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI+V+LKE+N E+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +L+GVLDYSEFKDVD+VIEAVIE++ LKQ IFS+LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQ+RI GAHFFSPAH+MPLLEI+RT++TSAQVILDL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID+ IR+FG PIGPFQL DLAGY
Sbjct: 481 KTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGFSFLFVF 584
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNG       +++
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIY 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.966	0.789	0.702	4e-216
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.983	0.797	0.677	2.6e-205
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.979	0.795	0.566	3.6e-176
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.976	0.793	0.567	5.6e-171
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.976	0.793	0.563	6.4e-170
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.755	0.584	0.324	2.5e-79
UNIPROTKB|F1PIP0	747	HADHA "Uncharacterized protein	0.757	0.597	0.308	1.5e-77
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.755	0.583	0.311	1.5e-77
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.757	0.584	0.306	2.9e-76
UNIPROTKB|Q29554	763	HADHA "Trifunctional enzyme su	0.757	0.584	0.306	2.9e-76

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 2088 (740.1 bits), Expect = 4.0e-216, P = 4.0e-216
 Identities = 400/569 (70%), Positives = 476/569 (83%)

Query:     6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
             VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct:     7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query:    66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+                M CHAR+A
Sbjct:    67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct:   127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct:   187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
             AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct:   247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct:   307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct:   367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM            
Sbjct:   427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct:   487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNG 574
                 + K + DR F+SP+ +LLLKSGRNG
Sbjct:   547 VGPIYAKVYGDRMFRSPMTELLLKSGRNG 575

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1986 (704.2 bits), Expect = 2.6e-205, P = 2.6e-205
 Identities = 395/583 (67%), Positives = 463/583 (79%)

Query:     3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
             A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct:     4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query:    63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
             GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP                 MGCHA
Sbjct:    64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query:   123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
             RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct:   124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query:   183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
             + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct:   184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query:   243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
             QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct:   244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query:   303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
             LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct:   304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query:   363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct:   364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query:   423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 482
             TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T        
Sbjct:   424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query:   483 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
                  NCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct:   484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query:   543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
             A A    +  AF  R+  S LVDL++++GR G    KG+ +L+
Sbjct:   544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY-YLY 585

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 1711 (607.4 bits), Expect = 3.6e-176, P = 3.6e-176
 Identities = 329/581 (56%), Positives = 429/581 (73%)

Query:     2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
             A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct:     5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query:    62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
             SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP                 M C
Sbjct:    65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query:   121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct:   125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query:   181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
             DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct:   185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query:   241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
             +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct:   245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query:   301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
             +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct:   305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query:   361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
             +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct:   365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query:   421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXX 480
             TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+       
Sbjct:   425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query:   481 XXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
                    NCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct:   485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query:   541 GVAAATSKEFDKAFPDRSFQSPLVDLLLK---SGRNGNKGF 578
             GVAAAT+ +F +AFP+R+++S L+ L+ +   +G +  KGF
Sbjct:   545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 1662 (590.1 bits), Expect = 5.6e-171, P = 5.6e-171
 Identities = 329/580 (56%), Positives = 425/580 (73%)

Query:     7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
             T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFD
Sbjct:    10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFD 69

Query:    67 INVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             I+ F ++  G      +  +S++++ +L+E  KKP                 M CHARI+
Sbjct:    70 ISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARIS 129

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV 
Sbjct:   130 APGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM    
Sbjct:   190 PAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPL 249

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
              CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL P
Sbjct:   250 MCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLVP 309

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK++
Sbjct:   310 RKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKMS 369

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             ++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTST
Sbjct:   370 KEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+            
Sbjct:   430 IDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVV 489

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA A
Sbjct:   490 VGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAIA 549

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
             T+ +F + FP+R+++S ++ L+ +  R G    KGF +L+
Sbjct:   550 TATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF-YLY 588

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
 Identities = 329/584 (56%), Positives = 423/584 (72%)

Query:     5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
             +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct:     8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query:    65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
             FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct:    68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query:   122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct:   126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query:   182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
             AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct:   186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query:   242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                  CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct:   246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query:   302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
             GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct:   306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query:   362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
             G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct:   366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query:   422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
             NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct:   426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query:   482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                   NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct:   486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query:   542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
             VA AT+ +F + F +R+++S ++ L+ +  R G    KGF +L+
Sbjct:   546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF-YLY 588

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 582 (209.9 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 152/469 (32%), Positives = 233/469 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG PE+ LG++PG GGTQRLP++VGL  A +MML  ++I +++  K+GL+  +V   
Sbjct:   164 KTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKAKKMGLVHQLVDPL 223

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRS---LHRT-DKLGSLSEARE-VLKL 229
                       T E L +V+  +A  +AA++    +    + +  D +  LS  R+ + K 
Sbjct:   224 GPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLMQKVQDFVMGLSLVRQQIYKT 283

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                +  K +  + P     ++ I+ GI  G  +G L EA+ F +L M   SR L+ ++  
Sbjct:   284 VHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLAMSSESRALIGLYHG 343

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   R V+ +A++G GLMG+GIA   I   +  +LK+   E L +G 
Sbjct:   344 QVACKK----NHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKDTTLEGLARGE 399

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  +  L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   400 QQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFEDLAIKHKVLKE 459

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   460 VEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 519

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  GV   ++DS    FG P
Sbjct:   520 TASAVAIGLKQGKLIVVVGDGPGFYTTRCLAPMLAEAVRILQEGVGPKKLDSLTTGFGFP 579

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKG 577
             +G   L D  G  VAA  +++  KAF  R F    VD L    + G KG
Sbjct:   580 VGLATLADEVGIDVAAHVAEDLGKAFGAR-FGGGNVDFLKTMVQKGFKG 627

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 580 (209.2 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 147/476 (30%), Positives = 238/476 (50%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG PE+ LG++PG GGTQRLP++VGL  A +MML  ++I ++   ++GL+D +V   
Sbjct:   151 KTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPL 210

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  ++ ++    R     +KL S + +     ++V K 
Sbjct:   211 GPGLKPPEERTIEYLEEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKK 270

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + +K    + P     +DV++ GI  G  +G L E++ F EL M   S+ L+ ++  
Sbjct:   271 VEEKVRKQTKGLYPAPLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHG 330

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+ +A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   331 QVLCKK----NKFGAPQKEVKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQ 386

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + LK ++  E
Sbjct:   387 QQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKE 446

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HC+ A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   447 VEAVIPGHCVFASNTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 506

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GV+  ++DS   SFG P
Sbjct:   507 TASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKKLDSLTTSFGFP 566

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKS------GRNGNKGF 578
             +G   L+D  G  VA   S++  KAF +R F+   ++LL +       GR   KGF
Sbjct:   567 VGAATLVDEVGVDVAKHVSEDLGKAFGER-FEGGNIELLKEMVSRGFLGRKSGKGF 621

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 568 (205.0 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 146/469 (31%), Positives = 230/469 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-- 185
             KT LG PE+ LG++PG GGTQRLP+++GL  A ++ML  +SI +++  K+GL+  +V   
Sbjct:   166 KTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAFDVMLTGRSIRADKAKKMGLVHQLVDTL 225

Query:   186 -----SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK---LARLQAKKT 237
                  S E   +  L  + + A R    + +  T + G + + ++ +      R Q   T
Sbjct:   226 GPGLKSPEERTIEYLEEVAVEAARGLAQKKITLTKEKGWMQKIQDYVMSYPFVRQQIYNT 285

Query:   238 APN--MPQ----HQACLDVIEE---GIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                  M Q    + A L +IE    G+  G  +G L E++ F +L M + S+ L+ ++  
Sbjct:   286 VEKKVMKQTKGLYPAPLKIIESVKAGVEQGPTTGYLVESQQFGKLAMTNESKALIGLYHG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   + V+ +A++G GLMG+GIA   +   I+ +LK+   + L +G 
Sbjct:   346 QVACKK----NRFGTPEKEVKTLAILGAGLMGAGIAQVTVDKGIHTILKDTTVDGLSRGE 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  L  L G LDY+ F   DM+IEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKTKKKSLTSFERDTFLSNLTGQLDYNGFNKADMIIEAVFEDLSIKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   D+++G H+FSP   M LLEI+ T++TS   
Sbjct:   462 VEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  G D  ++DS    FG P
Sbjct:   522 TASAVAVGLKQGKVIIVVGDGPGFYTTRCLAPMLAEAVRILQEGTDPKKLDSLTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNKG 577
             +G   L D  G  VAA  +++  KAF  R F    V+ L      G KG
Sbjct:   582 VGAATLADEVGIDVAAHVAEDLGKAFGSR-FGGGNVEFLKSMVEKGFKG 629

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 569 (205.4 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 146/476 (30%), Positives = 236/476 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG+PE+ LG++PG GGTQRLP++VG+  A +MML  ++I ++   K+GL+D +V   
Sbjct:   166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A R+    +S    +KL + +       ++V K 
Sbjct:   226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKT 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + KK    + P     +D ++ G+  G  +G L E++ F EL +   S+ L+ ++  
Sbjct:   286 VEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+++A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   346 QVLCKK----NKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HCI A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   462 VESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GVD  ++D+    FG P
Sbjct:   522 TASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKS------GRNGNKGF 578
             +G   L D  G  VA   +++  KAF +R F    V+LL +       GR   KGF
Sbjct:   582 VGAATLADEVGVDVAQHVAEDLGKAFGER-FGGGSVELLKQMVSKGFLGRKSGKGF 636

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 569 (205.4 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 146/476 (30%), Positives = 236/476 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG PE+ LG++PG GGTQRLP++VG+  A +MML  + I +++  K+GL+D +V   
Sbjct:   166 KTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVEPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A ++    R     +KL S + +     +++ K 
Sbjct:   226 GPGLKPPEERTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKK 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + +K    + P     +DV++ GI  G  +G L E++ F EL M   S+ L+ ++  
Sbjct:   286 VEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+ +A++G GLMG+GIA   +  ++  +LK+ +   L +G 
Sbjct:   346 QTLCKK----NKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + LK K+  E
Sbjct:   402 QQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HC+ A+NTS + ++ +   +   +++IG H+FSP   M LLEI+ TE+TS   
Sbjct:   462 VEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDS 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GV   ++DS   SFG P
Sbjct:   522 TASAVEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKS------GRNGNKGF 578
             +G   L+D  G  VA   ++   K F +R F    +D+L +       GR   KGF
Sbjct:   582 VGAATLMDEVGMDVAKHVAENLGKIFGER-FAGGNLDVLKQMISKGFLGRKSGKGF 636

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPI6	AIM1_ARATH	1, ., 1, ., 1, ., 3, 5	0.7521	0.9660	0.7891	yes	no
Q8W1L6	MFP_ORYSJ	1, ., 1, ., 1, ., 3, 5	0.7164	0.9881	0.8016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
3rd Layer	5.1.2.3	0.946
3rd Layer	1.1.1.35	0.946
4th Layer	4.2.1.17	0.946
3rd Layer	5.3.3.8	0.946
3rd Layer	4.2.1	0.963
3rd Layer	5.1.2	0.963
3rd Layer	5.3.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	589
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-135
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-111
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-103
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-100
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	6e-95
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	9e-80
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	2e-64
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	3e-64
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-59
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	1e-55
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	1e-51
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-51
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	6e-51
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	1e-49
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-45
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	3e-44
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	4e-44
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-43
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	3e-41
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	6e-40
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	4e-39
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	5e-39
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	7e-39
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	2e-38
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	2e-34
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-34
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	3e-33
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	5e-33
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	7e-32
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	3e-30
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	1e-29
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	3e-28
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	6e-27
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	2e-26
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	3e-26
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	4e-26
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-26
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-25
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	1e-25
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-25
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	4e-25
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	3e-24
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	5e-24
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	5e-24
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	1e-23
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-23
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	4e-23
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	2e-22
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	4e-22
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	4e-22
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	6e-22
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-21
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	4e-21
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	5e-21
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	7e-20
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	9e-20
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	1e-19
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-19
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	1e-19
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	2e-19
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-17
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	1e-17
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	1e-17
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	2e-17
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	3e-17
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-16
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-16
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	4e-16
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	4e-16
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	4e-16
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	1e-15
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	1e-15
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	2e-15
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-15
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	6e-15
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	6e-15
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	8e-15
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	9e-15
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	3e-14
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	4e-14
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	6e-14
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	3e-13
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	4e-13
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-12
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-12
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-12
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	6e-12
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	3e-10
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	8e-10
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	1e-09
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	2e-09
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	6e-09
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	9e-09
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	3e-08
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	6e-06
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	2e-05
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	4e-05
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	2e-04
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	7e-04
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	0.002

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  411 bits (1058), Expect = e-135
 Identities = 212/594 (35%), Positives = 308/594 (51%), Gaps = 27/594 (4%)

Query: 1   MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
           M      T+ V  D +A+IT+  P   +N L       ++   ++     ++K +V   G
Sbjct: 1   MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60

Query: 57  NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
               F  G DIN+      A +   +     + +   IE    P+VAA+ G  LGGGLEL
Sbjct: 61  KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++ 
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179

Query: 175 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 231
            KLGL+D VV    LL+V+   A     A R  P    L   + LG     R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234

Query: 232 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290
            +   KT  N P  +  LDV+  G+  G  SG   EA+ F EL M   S  L  +FFA  
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294

Query: 291 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 349
              K         KPR V KV V+GGGLMG GIA        + V +K++N + +   +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351

Query: 350 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 409
                +   V R  L   + +  + ++ G  DY  FK  D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411

Query: 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469
           E+ C PH I A+NTS++ +  +    +  +++IG H+FSP   MPL+E++   +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471

Query: 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 528
              + + K   K P+VV +  GF VNR   PY +++ARLL+  G  +  ID+A+  FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530

Query: 529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNG---NKGF 578
           +GP  LLD  G  V        + A  +R F +P   D LL   R G    +GF
Sbjct: 531 VGPITLLDEVGIDVGTKIIPILEAALGER-FSAPAAFDKLLNDDRKGRKNGRGF 583

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  346 bits (889), Expect = e-111
 Identities = 204/581 (35%), Positives = 301/581 (51%), Gaps = 21/581 (3%)

Query: 7   TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
           T+ V  DG+AI+T+      +N L       + +   +      ++ +VL +G    F  
Sbjct: 3   TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DI++      AG+   +      L    +E    P+VAA+ G  LGGGLELA+ CH+R
Sbjct: 63  GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           + +   KT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++  KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181

Query: 182 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 237
            VV    LL  +   AL      +       L     LG     R +L  + A+  AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236

Query: 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
             N P  +  LDV+ +G+  G   G+  EA+ F ELVM   S  L  +FFA     K   
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296

Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 356
                  P  ++KV ++GGGLMG GIA+       I V +K++N + +   +K     + 
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353

Query: 357 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 416
             V R  +T  + +N + ++ G  DY  FKDVD+VIEAV E + LK ++  ++E+ C  H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413

Query: 417 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476
            I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++    TS Q I   + + 
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473

Query: 477 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 535
           K   K P+VV +  GF VNR   PY +++ARLL+  G  V  ID A+  FG P+GP  LL
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPITLL 532

Query: 536 DLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNK 576
           D  G  V A  S   +    +R     + D LL   R G K
Sbjct: 533 DEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRK 573

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  328 bits (843), Expect = e-103
 Identities = 211/609 (34%), Positives = 304/609 (49%), Gaps = 30/609 (4%)

Query: 1   MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
           MA      EV  D  V  I   N  VN L+  + A  K+   E  + + +K+ VL +G  
Sbjct: 10  MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           G F  G DI +      A +V+ +     E+    IE  +KPIVAA+ G  LGGGLELA+
Sbjct: 70  GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128

Query: 119 GCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            CH RIA    KT LGLPE+ LG++PG GGTQRLP+L G+  A++MML  K I ++   K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188

Query: 177 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223
           +G++D +V             T E L +V+  +A  +A  +    R      K+      
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248

Query: 224 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 277
                ++V K A  +  K T    P     LDV+  G   G  +G   E+K F EL M  
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308

Query: 278 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 337
            S+ L+ +F  Q    K       G   R V+ +AV+G GLMG+GIA   +   +  VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364

Query: 338 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397
           +     L +G + +   +   V R K+T  + ++ L  L   LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424

Query: 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457
            + LK K+  E+E   PPHCI+A+NTS + +  +   +S  +++IG H+FSP   M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484

Query: 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 517
           I+  + TS   +   + VG    KV +VV +  GF   R   P       L+  GVD  +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544

Query: 518 IDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSP-LVDLLLKSGRNGN 575
           +D     FG P+G   L D  G  VA   +++  KAF +R    S  L+  L+K+G  G 
Sbjct: 545 LDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGR 604

Query: 576 KGFSFLFVF 584
           K    +F++
Sbjct: 605 KSGKGIFIY 613

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  318 bits (817), Expect = e-100
 Identities = 191/575 (33%), Positives = 293/575 (50%), Gaps = 34/575 (5%)

Query: 25  VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84
           VN L    +A L +  +   ++ D+K ++LT     F  G DI  F  +  A +  L   
Sbjct: 28  VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQW 87

Query: 85  VS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143
           +     + N +ED   P VAA+ G ALGGG E  +    R+A+P  ++GLPE  LG++PG
Sbjct: 88  LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPG 147

Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK--VSRLWA---- 197
           FGGT RLPRL+G   A+E +   K + +E+  K+G +DAVV  E+L +  ++ L      
Sbjct: 148 FGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAG 207

Query: 198 -LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTAPNMPQHQACLDVI 251
            LD  ARR+P         KL  L     EA      A+ + A+K   + P     +  I
Sbjct: 208 KLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTI 258

Query: 252 EEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310
           E      G    L+ EAK F +L   + +R LV +F   +             KP  V++
Sbjct: 259 EAAAGL-GRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKLAKDAKP--VKQ 315

Query: 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN 370
            AV+G G+MG GIA       + V++K++N + L  G+      +   V RGK+   K  
Sbjct: 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMA 375

Query: 371 NALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430
             L  ++  LDY+ F+ VD+V+EAV+E+  +K  + +E+E+      ILA+NTSTI +++
Sbjct: 376 GVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL 435

Query: 431 VGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT 490
           + +     +   G HFF+P H MPL+E++R E+TS + I  ++     + K P+VV +C 
Sbjct: 436 LAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCP 495

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549
           GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD+ G   A      
Sbjct: 496 GFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555

Query: 550 FDKAFPDR---SFQSPLVDLLLKSGRNGNK---GF 578
             + FPDR    ++   +D+L ++ R G K   GF
Sbjct: 556 MAEGFPDRMKKDYRDA-IDVLFEAKRFGQKNGKGF 589

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  305 bits (783), Expect = 6e-95
 Identities = 185/587 (31%), Positives = 290/587 (49%), Gaps = 20/587 (3%)

Query: 3   APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              + +    DG+A +    P  VN      +A L    +   ++  +K ++LT     F
Sbjct: 5   GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
             G DI  F  +    D  L+  +     + N +ED   P VAA+ G+ALGGG E  +  
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             RIA    ++GLPE  LG++PGFGGT RLPR++G   A+E +   K   +E+  K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184

Query: 181 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 232
           DAVVT+++L       LK +    LD  A+R+P +  L    KL  + EA      A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239

Query: 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292
            A+   P+ P     +  IE+    G    +  EAK F +L     ++ L+ +F   +  
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299

Query: 293 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352
                  D   K   V++ AV+G G+MG GIA         +V+K++N   L  G+    
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357

Query: 353 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 412
             +   V RG++T  K    L  +   L Y+ F +VD+V+EAV+E+  +K  + +E+E+ 
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417

Query: 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 472
                ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E++S + I  +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
           +     + K P+VV +C GF VNR  FPY      L+  G D  RID  + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGNK 576
             LLD+ G            + FPDR  +     +D L ++ R G K
Sbjct: 538 AYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQK 584

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  253 bits (648), Expect = 9e-80
 Identities = 112/278 (40%), Positives = 165/278 (59%), Gaps = 7/278 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KVAVIG G+MG+GIA    L    VVLK+++ E L + +  IE N+  LV +GKLT++
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  +    D +  KD D+VIEAV+E + LK+++F+ELE    P  ILA+NTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + E     +R IG HFF+P  +MPL+E++R E+TS + +  ++   K I K PVVV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR        A  L+  GV     ID+A+R   GLP+GPF+L DL G  V   
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 546 TSKEFDKAFPDRSF--QSPLVDLLLKSGRNGNK---GF 578
             K  ++   D  +    PL+  L+++GR G K   GF
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGF 280

Length = 307

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  211 bits (539), Expect = 2e-64
 Identities = 90/211 (42%), Positives = 124/211 (58%), Gaps = 4/211 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M    V +E   D VA+ITL +PP NAL+  ++  L +  ++    D+V+ +V+ G G  
Sbjct: 1   MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FS G DI  F  V  A   + +  +  ++    +E   KP++AA+ G ALGGGLELAM C
Sbjct: 58  FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           H R A    +LGLPEL LG+IPGF GTQRLPR VG +KA+EMML S+ IT  E  K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
           + V   E LL  ++  A  IA +     R++
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAV 207

Length = 257

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  208 bits (531), Expect = 3e-64
 Identities = 72/180 (40%), Positives = 113/180 (62%)

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KVAVIG G MG+GIA       + VVL +++ E L K    IE ++  LV +G++T++ A
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
           +  L  +    D ++  D D+VIEAV E++ LK+++F+EL+   PP  ILA+NTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T   +R IG HFF+P  +MPL+E+VR E+TS + +  ++ + K I K PVVV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  195 bits (499), Expect = 2e-59
 Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA ITL  P   NAL++ ++  L    +EA +  DV+ +VLTG G  F  G D+   
Sbjct: 6   DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
             +  AG+ +      ++ ++  +    KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 66  AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG++PG GGTQRLPRLVG ++A E++L  + I++EE  +LGL+D VV  EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185

Query: 191 KVSRLWALDI 200
             +   A  +
Sbjct: 186 AAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  189 bits (482), Expect = 1e-55
 Identities = 98/274 (35%), Positives = 149/274 (54%), Gaps = 5/274 (1%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
           G++K+ VIG G MG+GIA    +    VV+ +++   + +G+ TI  ++  LV +GK+T+
Sbjct: 2   GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
                AL  + G  D  + KD D+VIEA  E++ LK+KIF++L++   P  ILATNTS++
Sbjct: 62  ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
            +  +   T   D++IG HFF+P  VM L+EI+R   TS      +  + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYGVA 543
            N  GF VNR   P    A  +++ GV     ID  ++  G   PIGP  L DL G    
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTC 240

Query: 544 AATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK 576
            A  +   + F D  ++  PL+  ++ +G  G K
Sbjct: 241 LAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRK 274

Length = 282

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  177 bits (450), Expect = 1e-51
 Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
             GVA+I L  P  VNAL+  ++  L    E+      VKAIVLTG  G FS G DI   
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                A           + + + +ED  KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 65  AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG+IPG GGTQRLPR++G+S A+EM+L  + I ++E  K+GL+D VV  E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182

Query: 191 KVSRLWALDIAA 202
           + +   A  +A 
Sbjct: 183 EEAIELAQRLAD 194

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  176 bits (448), Expect = 3e-51
 Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A+ITL  P   NAL + ++  L +  +EA +  DV+ +VLTG G  FS G D+    
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                     +     + ++  + D  KP++AAV G ALGGGLELA+ C  RIAA   + 
Sbjct: 73  SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 190
           GLPE+ LG++PG GGTQRLPRL+G  +A E++L  + I++ E  +LGL+D VV  +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191

Query: 191 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238
           + +   A  +AA        + L R      L+EA E   LA  +   + 
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241

Length = 257

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  176 bits (449), Expect = 6e-51
 Identities = 88/272 (32%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV V+G G MGSGIA       + V L + +   L +G+ +I +++  LV +GK++Q+
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+  L  ++   +  E +D D +IEA++ES  LK+K+FSEL++ C P  ILA+NTS+I 
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +   T    ++IG HF +P  +M L+EI+R   TS +V      + +   K  V   
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   P    A   +  GV     ID+ ++     P+GP  L D  G     +
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 546 TSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK 576
             K   +   D  ++  PL+   + +GR G K
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRK 275

Length = 295

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  179 bits (455), Expect = 1e-49
 Identities = 102/273 (37%), Positives = 152/273 (55%), Gaps = 4/273 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VAVIG G MG+GIA         V+L ++ +E L + I  IEA +  LVT+GKLT +
Sbjct: 5   VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +    LK L  V D     D  +VIEA++E++ +K+ +F++LE+ CP   I+A+NTS++ 
Sbjct: 65  ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +    +  +R+ G HFF+PA VM L+E+V    T+A+V   L        K PV   
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184

Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P Y+++ R L         +D+A+R   G P+GPF+L DL G+ V  A
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFA 244

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK 576
            T   F+  + DR F  S +   L+ +GR G K
Sbjct: 245 VTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRK 277

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  160 bits (408), Expect = 2e-45
 Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGV  IT+  P   NAL   +   L D  E A +   V+ +VLTG G  FS G DI  F 
Sbjct: 13  DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           K        L P   V   +  I    KP+VAAV G A+G G+ LA+ C    A+   + 
Sbjct: 73  KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LP   LG+ P  GG+  LPRL+G ++A EM+LL + +++EE  ++GL++ VV + EL  
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189

Query: 192 VSRLWALDIAA 202
            +   A  +AA
Sbjct: 190 EADAQAAKLAA 200

Length = 259

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  164 bits (417), Expect = 3e-44
 Identities = 96/278 (34%), Positives = 147/278 (52%), Gaps = 7/278 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           +  VAVIG G MG+GIA         V+L +  +         I A +  LV +GKLT +
Sbjct: 7   IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  L+ V   ++  D D+V+EA++E + +KQ +F++LE    P CILATNTS++ 
Sbjct: 67  QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +       +R+ G HFF+P  +M L+E+V    T   V   L  + +   K PV   
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNRA  PY   A  ++  GV D   ID+ +R + G  +GPF+L+DL G  V  A
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHA 246

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK---GF 578
                + + + +  F+ S +   L+ +GR G K   GF
Sbjct: 247 VMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGF 284

Length = 507

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  158 bits (401), Expect = 4e-44
 Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 364
           ++ + V+G G+MG GIA         V + +V+ E L   ++ IE+    +R LV +GK+
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           ++D+A   +  ++    Y    D D ++EAV E + LK+K+F+ELE+   P  I+A+NTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            I +  +      +DR IG H+F+PA VM L+E+VR   TS +     + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAG 539
            V +  GF   R    +   A     +G+   + ID   + +FG P+GPF+L+D+ G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239

Length = 291

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  156 bits (396), Expect = 2e-43
 Identities = 88/272 (32%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           + K+ V+G G+MG GIA    ++     L ++  E L    + I +     V RGKLT+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 368 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
               AL  L   LD      D D+VIEAV E + LK+ +F   +   P  C +ATNTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
               +   T   +R+I  HFF+P H M L+E++R   TS + +     V + + K  VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAA 544
               GF  +R        A  ++  GV     ID AIR     P+GP +L DL G     
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNK 576
              K   +   ++   +PL++  +K+GR G K
Sbjct: 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRK 272

Length = 288

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  150 bits (381), Expect = 3e-41
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            +++V V+G G MG+GIA       + V++ E   E    G   IE ++   V+RGKLT+
Sbjct: 4   AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 425
            + + AL  L+   D  +F D  +VIEAV+E   +K +IF+EL+K    P  +LA+NTS+
Sbjct: 64  RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 484
           I +  +   T    R++G HFF+P  V+PL+E+V T  TS   +         ++ K  V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183

Query: 485 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
              + +GF VN    PY  SA R++ S       ID A+   G   P+GP +L DL G  
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGPLRLSDLVGLD 242

Query: 542 VAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGNK---GF 578
              A +    + F +  +  P L+  ++++G  G K   GF
Sbjct: 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGF 283

Length = 286

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  146 bits (369), Expect = 6e-40
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 20/206 (9%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           ++++     V  ITL  P   NAL++ ++  L++   +     +V+ ++LTG G + F  
Sbjct: 5   ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64

Query: 64  GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
           G D+      N  Q  H    VSL     +   + ++E   +P++AA+ G+ALGGGLELA
Sbjct: 65  GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           GL++ VV +  L +     A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  143 bits (363), Expect = 4e-39
 Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V +E   DGVA++ L  P   NAL + +   L + F E +   D++AIVLTG   
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI  F    GA ++ L      E     I  C KP++AAV G ALGGG ELAM 
Sbjct: 64  VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +A      G PE+ +G++PG GGTQRL R VG  KA+ M L    + + E   +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  E+ L      AL++A  
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199

Length = 261

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  143 bits (362), Expect = 5e-39
 Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 30/214 (14%)

Query: 8   MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           ME+ N        +A++T IN P  +NAL    +  L    ++  + D+V A++LTG G 
Sbjct: 1   MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
           +    F       V GA D+S M D++ E           V   +E+  KP++AA+ G A
Sbjct: 60  K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           LGGG EL+M C  RIA+ K + G PE+ LG+ PGFGGTQRL R+VG  KA E++     I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            +EE  ++GL++ VV  E+L++ ++  A  IAA 
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202

Length = 260

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  144 bits (365), Expect = 7e-39
 Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 10/238 (4%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV VIG G MG+GIA    L    V+L +V+++ L  G+ TI  N+   V +GK++++
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 424
               AL  +    D  +  D D+VIEA  E   +K+KIF++L   CP   P  ILATNTS
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           +I +  +   T   +R IG HF +P  VM L+E++R   T              + K   
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAG 539
           V  +   F VNR   P    A   +  GV  V  ID+A++  G   P+GP +L D  G
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIG 237

Length = 292

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  143 bits (363), Expect = 2e-38
 Identities = 87/275 (31%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++ +A+IG G MGSGIA       + VVL +V    L +    IE    G V        
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA-LG-VYAPLGIAS 61

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                ++M  G+         D+VIEAV E + LK+ +F+ L+  C P  I ATNTS + 
Sbjct: 62  AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + +  +  +R +G HFF+PA V+PL+E+VR ++TS Q +   M + + I K PV+V 
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179

Query: 488 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQLLDLAGYG 541
            +  GF  NR     ++ A  L+  GV     ID  ++ S G+ +   GP +  D+ G  
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLD 239

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGNK 576
           V  A +    +   +R+  SPL++  +++G  G K
Sbjct: 240 VHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAK 274

Length = 311

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  130 bits (329), Expect = 2e-34
 Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P  +NAL   ++  L        + + + AIV+TG+   F+ G DI    
Sbjct: 12  GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71

Query: 72  KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
                 D+S M     + + N   +   +KP++AAV G ALGGG ELAM C   IAA   
Sbjct: 72  ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G PE+ LGV+PG GG+QRL R VG +KA+++ L  + + + E  + GL+  VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185

Query: 190 LKVSRLWALDIAARRKP 206
           L  +   A  IA+   P
Sbjct: 186 LDEALAAATTIASFSLP 202

Length = 257

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  129 bits (327), Expect = 4e-34
 Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA P  T+E     V I+TL  P V NAL +     L++ F++  +  +    ++TG G 
Sbjct: 1   MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
           + FS G D+    K   AG     P+        L    D  KPI+AAV G+A+GGG EL
Sbjct: 60  KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           A+ C   +AA      LPE  +G+    GG  RLPR +GL +A+ M+L  + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           LG ++ VV + ELL  +  WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  127 bits (321), Expect = 3e-33
 Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A++TL  P  +NAL   ++  L  + +     + V+A++LTG G R FS G DI+ F
Sbjct: 11  DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70

Query: 71  QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
                +  V+   DV++   V         +E   KP++AAV GLA GGG E+    H  
Sbjct: 71  -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA+ +     PE+ LG+ P FGGTQRLPRL G  +A+E++L   + ++E   ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185

Query: 184 VTSEELLKVSRLWALDIAA 202
           V  EELL  +R  A  I  
Sbjct: 186 VPHEELLPAARALARRIIR 204

Length = 260

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  126 bits (319), Expect = 5e-33
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   
Sbjct: 10  QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A     + D   +L    ++   KP++AAV G ALG G ELA+ C   IA    + 
Sbjct: 70  EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V   E  L 
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183

Query: 192 VSRLWALDIAAR 203
           + R  AL +A++
Sbjct: 184 LER--ALQLASK 193

Length = 255

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score =  123 bits (311), Expect = 7e-32
 Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D VA++TL NPPVNAL+  +   L   F+E + R DV+ +VLTG G  F  G D+     
Sbjct: 12  DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71

Query: 73  VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           V  G GD+      + E   + I +C KP++AAV G ALG GL L   C   +A+     
Sbjct: 72  VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+ +G+    GG +   RL G S    MML    + + E ++ G+I+A +  EEL+ 
Sbjct: 131 GLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMP 187

Query: 192 VSRLWALDIAAR 203
            +   A +IA++
Sbjct: 188 EAMEIAREIASK 199

Length = 257

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score =  119 bits (300), Expect = 3e-30
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            G+  IT  NP   NA+++ +   L      A   D ++ +VLTG G + F  G DI+ F
Sbjct: 19  GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++     +     + +VE     + D  KP +A + G  +GGG+ +A+ C  RIAA  ++
Sbjct: 79  EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G+P   LG+  G+ G + L  LVG S A ++   ++   + E  ++GL+  V  +++L 
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198

Query: 191 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 230
                +A  IA      +R+  R           E+LK  
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230

Length = 269

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score =  117 bits (295), Expect = 1e-29
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)

Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
           VAI+TL NPP N      +  LK    E  +  DV A+V+TG+G +F S G D+N+F   
Sbjct: 13  VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69

Query: 74  HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
              GD      V+ E+     E        +   +AA+ G A+GGGLE A+ C  RIA  
Sbjct: 70  -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           + Q+ LPE ++G++P  GGTQ LP LVG   A  M+L  + + +    ++GL++ VV   
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184

Query: 188 ELLKVSRLWALDIAAR 203
           E    +R  AL +A +
Sbjct: 185 E----AREAALALAQK 196

Length = 258

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  114 bits (287), Expect = 3e-28
 Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 14/283 (4%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 366
           ++ V V G G++GS IA     +   V + +++ E L K  + I       V   + T+ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 367 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             A  AL  +    D +E  KD D+VIEAV E   +K   + EL K  P   I ATN+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           +  +   E T   ++ +  HF +        EI+    T  +V   ++   K I  VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 486 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGV 542
           +     G+ +N    P+  +A  L + GV D   ID     + G P+GPF +LD+ G   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLKS-------GRNGNKGF 578
           A   +  + +A  D + +      LLK        G    +GF
Sbjct: 243 AYNITSNWAEATDDENAKK--AAALLKEYIDKGKLGVATGEGF 283

Length = 287

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  109 bits (275), Expect = 6e-27
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           D V  +TL N P   NAL+  +   L     EA + DDV  +VLTG    F  G D+   
Sbjct: 12  DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G    +     ++          +KP++ A+ G A+ GGLELA+ C   IA+ + +
Sbjct: 68  -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++PG+G + RLP+ VG+ +A  M L    + + +  + GL+  VV  +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186

Query: 191 KVSRLWALDIAARRKPWIRSL 211
             +R  A  IA      +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207

Length = 258

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  108 bits (271), Expect = 2e-26
 Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 11/194 (5%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA I L  P   NAL   ++A L+  F      + V+A+VL G G  F  G D++  
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++   AG+  +        V + I+  + P++AA+ G  +GGGLELA   H R+A   T 
Sbjct: 67  RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 189
             LPE   G+  G GG+ R+PRL+G+++  +MML  +   ++EG +LGL   +V   E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184

Query: 190 LKVSRLWALDIAAR 203
            K     A+++A R
Sbjct: 185 DK-----AMELARR 193

Length = 255

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score =  108 bits (271), Expect = 3e-26
 Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA ITL  P   N L     A L+D F E    DDVKA+VLTG GG F  G D     
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79

Query: 72  KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
            VH   G ++ M     EL         +V  +  C +PI+AAV+G+  G G  LAM   
Sbjct: 80  -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136

Query: 122 ARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            R+  P  +       +G+     G    LPR++G  +A E++   +S+++EEG + G  
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +V  EELL  ++  A  +AA
Sbjct: 197 NRLVEPEELLAEAQALARRLAA 218

Length = 277

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  107 bits (269), Expect = 4e-26
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + +EV   G+A IT   P   NA+   +  GL +  E   +   ++A+VL G G 
Sbjct: 5   TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G DI  F+    A D ++  +  ++ V+  +E  + P +AA+ G  +GGG  +A 
Sbjct: 64  KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122

Query: 119 GCHARIAAPKTQLGLP-ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
            C  RIA P  + G P   TLG         RL  L+G ++  +M+  ++ + +EE    
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182

Query: 178 GLIDAVVTSEEL 189
           GL++ VV    L
Sbjct: 183 GLVNEVVEDAAL 194

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score =  106 bits (267), Expect = 6e-26
 Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            +  V +E     V IIT+  P   NA+   +  GL    +E  +  D+   +LTG GG 
Sbjct: 1   MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
           F  G D+  F      G+    P +       L E   +KP++AAVEG AL GG ELA+ 
Sbjct: 60  FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AA   + GLPE+  G++   GG  RLPR +    A+E+ L    +T+E   +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           ++ +    + L  +   A  IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195

Length = 254

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score =  106 bits (266), Expect = 1e-25
 Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 13/217 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA   V  EV + GVA+ITL  P  +NA    + A +    + A +   V+ IVLTG G 
Sbjct: 2   MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
            F  G D+   Q +    D     DV    V N   D           +KP++AA+ G  
Sbjct: 62  GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
            G GL  A+ C  R AA   +        G+I   G +  LPRLVG + A++++L +++ 
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
            +EE  +LGL++ VV  +EL++ +  +A D+A    P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216

Length = 272

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  105 bits (265), Expect = 1e-25
 Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 8/190 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G+A IT IN P  +NAL  P++  L   F+     D VK I+LTG+G  F  G D+   +
Sbjct: 19  GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +V   GDV    DV  + V  + E C+KPI+ A+ G A+  G E+A+ C   +A+   + 
Sbjct: 78  EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
                  G+ P +G +Q+L R++G ++A E+ L +  +T+E   + GL++ VV   ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192

Query: 192 VSRLWALDIA 201
            +R  A  I 
Sbjct: 193 KAREVAEAII 202

Length = 265

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score =  105 bits (265), Expect = 2e-25
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 14  GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            +  +T+  P   NAL+    V  L        +   V+A++LTG G  FS G ++   +
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71

Query: 72  KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              GA   S   D+       ++ +   + + + P++AAV G A+G G +LA  C  RIA
Sbjct: 72  ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   +     + LG+IPG GG   LPR++G+++A EM     +I +    + GL+  VV 
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190

Query: 186 SEELLKVSRLWALDIAA 202
           +++LL  +R  A  IAA
Sbjct: 191 ADQLLPAARALAERIAA 207

Length = 266

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  104 bits (260), Expect = 4e-25
 Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
           + G+  + L  P   NA+   ++ GL+  FE+  +    + ++L  +  G F  G D+  
Sbjct: 2   DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            ++     +V    + S+    + +E    P +A VEG ALGGGLELA+ C  RI   + 
Sbjct: 62  -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
             GLPE  L +IPG GGTQRLPRLVG S+A E++   + I + E   +GL++  V + E 
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178

Query: 190 LKVSRLWALDIA 201
              +   AL++A
Sbjct: 179 ---AYEKALELA 187

Length = 251

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  102 bits (257), Expect = 3e-24
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 20/213 (9%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
            DG+A ITL  P  +NA  + +   L + F+ A + D V+A+++TG G  F  G D+   
Sbjct: 11  ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70

Query: 68  -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
            N F     +     D     D S + V      V L I D  KP++AAV G A+G G  
Sbjct: 71  GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           + LAM    R+A+   + G      G++P    +  LPRLVGL  A+E +   +   ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
               GL+ +V   +ELL  +R  A +IA    P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221

Length = 296

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score =  101 bits (253), Expect = 5e-24
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 12/196 (6%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           N  +  ITL  P  NA+       + + F       +++  ++TG G + FS G+D+   
Sbjct: 10  NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66

Query: 71  QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
            K    G+    P  D        L E  D  KP++AAV G A GGG ELA+     + A
Sbjct: 67  -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                 LPE  LG++P  GG  RLP+ +  + A EM++  + + +EE  + G+++ VV  
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182

Query: 187 EELLKVSRLWALDIAA 202
            EL+  +R  A  +  
Sbjct: 183 AELMDRARELAQQLVN 198

Length = 261

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score =  101 bits (252), Expect = 5e-24
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +    ++A    D+  ++LTG G + F  
Sbjct: 4   IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63

Query: 64  GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           G D    QKV G     D S +  ++V  V   I  C KP++A V G A+GGG  L M C
Sbjct: 64  GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              IAA   + G     +G   G  G+  + R+VG  KA E+  L +   +++   +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213
           + VV   +L K +  W  +I  +    IR L  
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  100 bits (251), Expect = 1e-23
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+E+   G VA +TL  P V NA    ++A L   F    + D V+A+VL G G  F  G
Sbjct: 5   TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
            D+N  +K+ G  D     D +  L  ++  I  C KP++A V G A  GG+ L   C  
Sbjct: 65  ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +AA      L E+ LG+IP        P   R +G   A    L ++   + E  +LGL
Sbjct: 124 AVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGL 179

Query: 180 IDAVVTSEEL 189
           +  VV +E L
Sbjct: 180 VHEVVPAEAL 189

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score =  100 bits (251), Expect = 1e-23
 Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
            T+E+  D VA +TL  P   NA+     + L + F    +  +V+A+VL+G+G  FS G
Sbjct: 8   FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66

Query: 65  FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
            D+     VF ++     A   + +    + L   +N + DC+KP++AAV+G  +GGG++
Sbjct: 67  IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126

Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
           L   C  R A+   +  + E+ LG++   G  QRLPR++G     E+ L  + I + E  
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186

Query: 176 KLGLIDAVV-TSEELLKVSRLWALDIAA 202
           K+GL++ V   ++ LL  +   A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214

Length = 272

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 98.7 bits (246), Expect = 4e-23
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
           M   +VT++  + GVAI+TL +P V NA++I ++ GL +  +     + +V+ +VLTG G
Sbjct: 1   MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
             F  G   N+  +  G  +     D    L       +  + +   PIV AV G A G 
Sbjct: 60  RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G+  A+     + A           +G++P  G T  LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
              + GL++ VV   EL+  +   A ++A 
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207

Length = 266

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            GVA +T+ N   +N L  P++  L        +  DV+ +VL G G + F GG DI   
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 71  QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
                    +L    +   +  L      +     P++A + G  LGGGLELA  C  RI
Sbjct: 75  --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           AA   Q G+PE+ +G IP       LPRL+G ++   ++L  ++I + +    GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185

Query: 185 TSEEL 189
              EL
Sbjct: 186 PLAEL 190

Length = 256

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V  + L  P V NA+  P  A L D F    + D     VL G GG F  G D+   
Sbjct: 10  NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69

Query: 71  Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 ++H +GD  + P     + ++      KP++AAV G A+ GGLELA+ C  R+A
Sbjct: 70  GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
                 G+     GV    GGT RLPRL+G S+A++++L  + + ++E   +GL + VV 
Sbjct: 121 EEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180

Query: 186 SEELLKVSRLWALDIAA 202
             +    +   A ++AA
Sbjct: 181 KGQARAAAEELAAELAA 197

Length = 254

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 96.1 bits (239), Expect = 4e-22
 Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 25/217 (11%)

Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            +A+ITL  P  +N++A  ++  LK+   E +  + V+ +VLTG G  FS G D     K
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74

Query: 73  VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
             G      +P V           S+EL+ ++I   ++   P++AAV G A+GGGL LA+
Sbjct: 75  SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129

Query: 119 GCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
               R+A+         +  G+     G +  LPR +G S+A E+ML  + + +EE  ++
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
           GL+   V  E+LL      A  +A   +P I    RT
Sbjct: 190 GLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226

Length = 276

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 94.1 bits (234), Expect = 6e-22
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            + G+A + L  PP NAL   +   +     E   RDDV A++L G    FS G D+   
Sbjct: 14  QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73

Query: 71  QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           + +    A   + +   +V+ V  +     KP VAA+ G ALG GL LA+    R++   
Sbjct: 74  RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G  E+  G+ P   G  RL R  G S+A E++   +   +EE   LGLID +V  ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189

Query: 189 LLKVSRLWA 197
           +   +  WA
Sbjct: 190 VYDAAAAWA 198

Length = 222

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P   +E       I+T+  P   NAL+  ++  + D ++   +  D+++ +LTG GG F
Sbjct: 4   GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62

Query: 62  SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
             G D+    K         G+ D S +          L++     KP++AAVEG A+ G
Sbjct: 63  CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G E+  G   R+A    + G+ E    + P  G   RL R +  + A +++L  + IT+ 
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           E  ++GLI  VV   + L      AL++A  
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201

Length = 263

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 92.6 bits (231), Expect = 4e-21
 Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)

Query: 4   PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
            RV++ +  DG+A + L  P  +NAL   +   L    +       ++A++L+G GG F 
Sbjct: 3   DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
            G D+           V+  P  +V+L+   +                   P++AA+EG+
Sbjct: 62  AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112

Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168
             GGGL++A+G   RIAAP T+L + E   G++P   GT  L  LV    A E+   ++ 
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172

Query: 169 ITSEEGWKLGLIDAVV 184
            ++EE  +LGL+  V 
Sbjct: 173 FSAEEALELGLVTHVS 188

Length = 262

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 93.3 bits (232), Expect = 5e-21
 Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
           +T E   DG+A IT+  P V NA     V  + D F +A    +V  I+LTGNG     F
Sbjct: 20  ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79

Query: 62  SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             G D    QKV G      D   +P ++V  +  LI    KP++A V G A+GGG  L 
Sbjct: 80  CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C   IAA     G     +G   G  G+  L R+VG  KA E+  L +   +EE   +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
           GL++ VV   +L K +  WA ++ A+    +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229

Length = 282

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 7e-20
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +T      G+A +T+  PPVNAL       L D    A +  D + +VL   G  F+ G 
Sbjct: 3   ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
           DI   Q           P  +  +  N         + +C  P++AAV G  LGGG+ L 
Sbjct: 63  DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
                 +A+     GLPE+  G +   G    L RLV       +   + +IT+ E    
Sbjct: 114 GNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHF 170

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
           G ++ VV  ++L + +   A  IAA+    IR
Sbjct: 171 GSVEEVVPRDQLDEAALEVARKIAAKDTRVIR 202

Length = 249

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 88.8 bits (220), Expect = 9e-20
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            GVA +TL  P  +N+    +   L++  E    RDD +A++LTG G  F  G D++   
Sbjct: 7   AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65

Query: 72  KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              G       PD+  ++E     +V  +     P+V AV G+A G G  LA+ C   +A
Sbjct: 66  PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A   +       +G+IP  GGT  LPRLVG ++A+ + +L + + +      GLI  VV 
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180

Query: 186 SEELL 190
              L+
Sbjct: 181 DAALM 185

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+A  ++   G     ++TL NP   NAL   + A   +    A     ++A+VLTG GG
Sbjct: 1   MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
            F  G ++N         + +  P V   S++ + + I       KP++AAVEG A G G
Sbjct: 59  FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
             LA+ C   +AA   +  +  + +G+ P  GG+  L R +    A E++L  K I++E 
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
              LG+++ +    + L  +   A  +AA 
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203

Length = 260

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 88.8 bits (220), Expect = 1e-19
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 21  INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
           +N P   NAL++                 +V  I+L+G G  F  G D+     +     
Sbjct: 23  LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82

Query: 74  ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               G     L   +  ++  +  IE C+KP++AA+ G  +GGG+++   C  R  +   
Sbjct: 83  SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 188
              + E+ L +    G  QRLP +VG   A+E+ L  +  +  E  +LGL+  V  S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202

Query: 189 LLKVSRLWALDIAAR 203
           L +  RL A  IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              V ++V +DGVA+IT+ +P   NA+   + A L+     A +  DV A+V+TG G  F
Sbjct: 2   MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G      +  +    +   +  C  P +AAV G A+G GL LA+   
Sbjct: 61  CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            RIA PK         LG+ PG G T  L R VG   A   +L      +E   + GL  
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 226
            V   ++ +  +   A   AA  +  +     S+  T  L   + A E 
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225

Length = 249

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    V +    +G+A +T+    V  NA +  +   L + F+        K ++LTG  
Sbjct: 1   MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
             F+ G        +   G  +     +   + +L  +C  P++AA++G A+GGGL L +
Sbjct: 60  NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
                + + ++      +  G  PG G T  LP  +GL+   EM+L ++     E  K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR--RKP 206
           +   V+   E+L+     AL++A     KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200

Length = 249

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A IT+  P V NA     V  + D F +A   D++  I+LTG G + F  G D    
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76

Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           QKV G G   D   +P ++V  +  LI  C KP++A V G A+GGG  L + C   IAA 
Sbjct: 77  QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +   ++E   +GL++ VV   
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196

Query: 188 ELLKVSRLWALDI 200
           +L K +  W  ++
Sbjct: 197 DLEKETVRWCREM 209

Length = 273

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 66/200 (33%), Positives = 97/200 (48%), Gaps = 19/200 (9%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           +G+A I  IN P  +NA        L    ++A     +  IVL G G + F  G D   
Sbjct: 10  NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD--- 65

Query: 70  FQKVH-----GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            Q  H     G G + L     +E + + I D  KP++A V+G A+GGG  L   C   I
Sbjct: 66  -QSTHDGGYDGRGTIGL----PMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTI 120

Query: 125 AAPKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+ K Q G     +G V PG+ GT  L R+VG  KA E+  L +  T++E   +GL++AV
Sbjct: 121 ASEKAQFGQVGPKVGSVDPGY-GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV 179

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V  ++L    + W  +I  +
Sbjct: 180 VPHDQLDAEVQKWCDEIVEK 199

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 8/195 (4%)

Query: 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446
           D D+V EAV E +  K++    L +      I+A+ TST  +  +    +  +R + AH+
Sbjct: 79  DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHW 138

Query: 447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR-AFFPYSQSA 505
            +PA++MPL+E+  ++ T   V+  L  + + I KVPVV G   G+ V R      +++A
Sbjct: 139 LNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAA 198

Query: 506 RLLVSLGV-DVFRIDSAIR-SFGLP---IGPFQLLDLAGYGVAAATSKEFDKAF-PDRSF 559
           R +V  GV     ID AIR  FGL    +G  + +D  G  +    S+       PDR  
Sbjct: 199 R-MVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFA 257

Query: 560 QSPLVDLLLKSGRNG 574
              +V   ++ GR+G
Sbjct: 258 PPAIVVRNMEEGRDG 272

Length = 314

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   P    A  LV  GV     ID+A+R   GLP+GPF+L DL G  V     +
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 549 EFDKAFPDRSFQ-SPLVDLLLKSGRNGNK---GF 578
              + F DR+++ SPL++ L+++GR G K   GF
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGF 94

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P   NA     V  L+  F +A     V  I+LTG G + F  G D  V 
Sbjct: 75  EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G         ++V  +   I    KP++A V G A+GGG  L M C   IAA    
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  + RLVG  KA EM  L++  T+ E  K+GL++ VV  +EL 
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253

Query: 191 KVSRLW 196
             +  W
Sbjct: 254 GETVKW 259

Length = 327

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    + + +   GVA +TL N P  +N+    +   L++  ++    D  +A++LTG G
Sbjct: 1   MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
             F  G D+       G      MPD   S+E     +V  +     P++AAV G+A G 
Sbjct: 58  RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G  LA+ C   +AA         + +G++P  GGT  LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           +  + GLI  VV    L   ++  A  +A 
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203

Length = 262

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 65/230 (28%), Positives = 90/230 (39%), Gaps = 36/230 (15%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    V  EV    +A ITL  P   NA    ++  L   F  A + D V+ IVL G G 
Sbjct: 1   MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
            FS G D+          D    PD    L  +                          D
Sbjct: 60  HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---FGGTQRLPRL 153
             KP +A V+G  + GGL LA  C   +A+       P + +G IPG   F     L   
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWEL--- 172

Query: 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            G  KA E++     +T++E  +LG+++ VV  +EL   +   A  IAA 
Sbjct: 173 -GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221

Length = 288

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I    P   NA+   + A +    + A + D ++A V  G  G FS G D+  F  
Sbjct: 15  GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
               G  S   ++ ++ ++ L E  +KPIV+ V+GLA+G G  + + C    A+P++   
Sbjct: 75  A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
            P + L ++P  G +   PRL+G  +A  ++ L +  ++E   + GLI  +V  E +   
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191

Query: 193 SRLWALDIAAR 203
           +   A ++AA+
Sbjct: 192 TLKAAEELAAK 202

Length = 251

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            + K A IGGG++G G A   +L  I V + + + E     I  + AN            
Sbjct: 3   MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49

Query: 367 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 414
             A  A  ML          L +           D + E+V E + LK+++ +E++ A  
Sbjct: 50  --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
           P  ++ ++TS    + + E  +  +R+  AH ++P +++PL+E+V   +TS + I     
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167

Query: 475 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL---P 528
           + + I   PV +      F  +R      + A  LV  G+     ID  IR SFGL    
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227

Query: 529 IGPFQLLDLAG 539
           +G F+   +AG
Sbjct: 228 MGLFETYRIAG 238

Length = 495

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           P +  +    GV  I L  P   NA    +   L D + +     DV+ +++ G G  FS
Sbjct: 11  PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            G D+ + +++  A D  +   V  E   LV N+I +C KPIV+A+ G A+G GL  A+ 
Sbjct: 71  AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA   ++      LGV  G       P L G++KA   +LL + ++ EE  ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  +ELL      AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207

Length = 268

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 368
             VA+IG GL+G   A         V L + +          I   +  L     L  + 
Sbjct: 3   GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62

Query: 369 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
            +  L  ++     ++   D D V E+  E++ LK+ +F+EL+   PPH ILA++TS + 
Sbjct: 63  PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
            +   E  + ++R + AH  +P +++P++E+V    T+   +     + +   + PV + 
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182

Query: 488 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQLL 535
               GF +NR      Q A L     LV+ GV  V  ID+ IR  GL      +GPF+ +
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFETI 236

Query: 536 DL-AGYGVA 543
           DL A  GVA
Sbjct: 237 DLNAPGGVA 245

Length = 308

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            DGVA ITL +  VNAL+  ++  L    ++A   DD   +V+TG  G FSGGFD+ V  
Sbjct: 10  EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
              GA     +      L   L+    KP++ A  G A+  G  L +    RI      +
Sbjct: 68  S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124

Query: 131 LGLPELTLG-VIPGFG---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           +GL E+ +G  +P         RL       +A+   + ++    EE    G +D VV  
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180

Query: 187 EELL 190
           E+LL
Sbjct: 181 EQLL 184

Length = 229

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA I L  P   NAL  P++  L    +E  +      +VL GNG  FS G DI + 
Sbjct: 13  EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
              +       + +   E+VV L     K  ++A+ G A G GL +A+     IA    +
Sbjct: 72  LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           L +  + +G+IP  GG   L + VG +KA +++   K +++ E   LGLID V+  +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187

Length = 260

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 7   TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+ +  D  GVA +TL  P   NAL+  ++A L        +   V+ +VLTG G  F  
Sbjct: 5   TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64

Query: 64  GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D+   +         ++  A  +++M        +  + D  KP++  ++G A GGG+
Sbjct: 65  GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
            L   C   IA    + GL E  LG+IP       + R +G + A  + + ++   +EE 
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEA 175

Query: 175 WKLGLIDAVVTSEEL 189
            +LGL+  VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190

Length = 262

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 74.6 bits (183), Expect = 6e-15
 Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%)

Query: 20  LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
           L  P  N +   ++A L     E      ++A++L   G  FS            GA   
Sbjct: 16  LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64

Query: 80  SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
             MPD    ++ +L      + D   PI+ AV G  LGGGLE+A   +   AAP  +LG 
Sbjct: 65  EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124

Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+ LGV      +  LP  +G   A +++   +SI   EG ++GL +AV    E   + 
Sbjct: 125 PEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL- 182

Query: 194 RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246
             +    A      +R   R  +LG     +   K+A ++A      M  H A
Sbjct: 183 AWFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V+ E    G V +I L  P   NA    ++  L     E  + D+++  VL  +G  F+ 
Sbjct: 1   VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D+        AG     P+  ++    +     KP+V AV+G  L  G+EL +     
Sbjct: 59  GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA  T+    E+  G++P  G T R P+  G   A+  +L      ++E  +LGL+  V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   E L+     A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193

Length = 255

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 9   EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
            V  DG V  I L  P   NAL   +   L++   +A   +  +AIVLTG G  F  G D
Sbjct: 3   GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           ++      G       PD  +E++   I+    P++AA+ G A+G GL+LAM C  R+ A
Sbjct: 62  LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+     P    G+       +RL  LVG  +A  M+L ++ +T+E+    G+ + + T 
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173

Query: 187 EELLKVSRLWALDIAA 202
              L  ++ WA +IA 
Sbjct: 174 ---LADAQAWAAEIAG 186

Length = 243

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 74.0 bits (182), Expect = 9e-15
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A +TL  P V N   IP+   + +    A     V+ +++  NG  FS G D+   +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +     DV  +  +  ELV  +   I+   KP++  V+G   G    +A+     IA+ K
Sbjct: 70  RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           T+     + +G+ P  GG   L R +GL++A  + +  +++T+E+  + G +  V  SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188

Query: 189 LLKVSR 194
           L K   
Sbjct: 189 LEKTCE 194

Length = 255

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 34/83 (40%), Positives = 47/83 (56%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161
           +A V+G ALGGG E A+  H  IA    ++G PE+   + PG G    L R VG   A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184

Query: 162 MMLLSKSITSEEGWKLGLIDAVV 184
           ++L  K  T+EE   +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207

Length = 287

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             AP +  E   DGVA +TL  P   NAL+  ++A L+   +   +   V+ +VL   G 
Sbjct: 8   TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66

Query: 60  RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G D+   +   G      L    S   V+  I    +P++A V G+A   G +L  
Sbjct: 67  AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124

Query: 119 GCHARIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
            C   +AA   +  +P + +G+    P       L R V   +A+EM+L  + I +    
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAR 180

Query: 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203
           + GL++ VV ++ L       A  IAA+
Sbjct: 181 EWGLVNRVVPADALDAAVARLAAVIAAK 208

Length = 266

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
           + +A IT  NP   NAL+  ++  L     +  +R +++ ++L    G   +S G DI+ 
Sbjct: 12  NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             ++   G   L  D  +  ++ +I+   KP++A VEG   GG  EL M C   IAA  +
Sbjct: 70  --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
              +    LGV     G        G     EM   +  IT++    +G+++ VV  EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187

Query: 190 LKVSRLWALDIAA 202
              +   A  I+ 
Sbjct: 188 EDFTLQMAHHISE 200

Length = 261

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                V   V + GVA +TL +P   NAL+  +VA L D    A +   V+A+VLT  GG
Sbjct: 3   PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++  +   G GD           +  L   I +  KP++AA++G    GG  L
Sbjct: 62  TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153
              C   +A P++   L E  +GV P       LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156

Length = 260

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V +EV  DG+A +TL N P   NA++  +   + D  +     DD   +VLTG G  +S 
Sbjct: 10  VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67

Query: 64  GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
           G D+   F++     ++         L   +  +           +KP +A V G   GG
Sbjct: 68  GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G    + C   IAA + Q GL E+  G+ PG G ++ +   VG   A+  ++  ++ T  
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178

Query: 173 EGWKLGLIDAVVTSEEL 189
           +  ++GL++  V   +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195

Length = 275

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +T EV    +A ITL  P   NA+       L+   E A     V  I+++G G  F  G
Sbjct: 12  MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
           +D++ + +   +G          + V +L +D                         KP 
Sbjct: 71  YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGFGGTQRLPRLVGLSKAI 160
           VA V G  + GG ++A+ C   IAA   ++G P   + GV        RL    G  +A 
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAK 186

Query: 161 EMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            ++     IT  +  + GL    V  EEL
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVPPEEL 215

Length = 302

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 69.1 bits (170), Expect = 1e-12
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           GV +ITL N P  +NAL++ ++  +    +     D V A+V+ G G R F  G DI   
Sbjct: 12  GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70

Query: 71  QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +   AGD          E  +N LI    KP +A ++G+ +GGG+ ++     RI   +
Sbjct: 71  YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVG 155
           T++ +PE  +G  P  GGT  L R  G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157

Length = 342

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +G AI+T+  P  +NAL + +      K ++  +   ++ +++TG G  F  G D++ F 
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
               A D ++    +   ++  I    K  ++A+ G+  G  + +A+    + A+   + 
Sbjct: 67  ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
                 LG+    G    L +L G  +  E+++L    T+EE  + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170

Length = 248

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ V   G V  + L  P   N +   ++A   D  +          +VL G    F  G
Sbjct: 5   TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
            D   F  +    D      +  E + +L           +A V G    GG+       
Sbjct: 63  AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119

Query: 122 ARIAAPKTQLGLPELTLGVIPG----FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
             IA       L EL  G+IP     F     L R +G  KA  M L+++ +T+++ +  
Sbjct: 120 IVIADETAPFSLSELLFGLIPACVLPF-----LIRRIGTQKAHYMTLMTQPVTAQQAFSW 174

Query: 178 GLIDAVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 225
           GL+DA    S+ LL+  + RL  L+ AA  R K +  +L       +++ AR 
Sbjct: 175 GLVDAYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222

Length = 255

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            A P V ++    G+A++ L   PVN++ + +   L D      +   V+ +V      R
Sbjct: 8   GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67

Query: 61  --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
             F+ G DI    +++        P  S              +V L+   +   V A+ G
Sbjct: 68  DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLLS 166
               GG  +++ C  R+   +  +GL E+ LG+ +P F     + R++    A  ++L  
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176

Query: 167 KSITSEEGWKLGLIDAVVTSEELL 190
           + +   E  +LGLID VV +  L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200

Length = 278

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P   N +++ +V+ L +  E+    D V+ I++ G G  FS G D+ +F 
Sbjct: 19  GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78

Query: 72  KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 D     D  +E+V  +      I   KK  VA V GL +GGG  L +    R+ 
Sbjct: 79  D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVG 155
             KT    PE ++G     G +  L RL G
Sbjct: 133 TEKTVFATPEASVGFHTDCGFSYILSRLPG 162

Length = 379

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
            G   I    P V NA     V  L    + A    DV  ++LTGNG      G  F  G
Sbjct: 33  QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92

Query: 65  FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
            D    Q++ G        GD +   D +       +E V  LI    K ++A V G A 
Sbjct: 93  GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147

Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
           GGG        L LA   HAR       +G          G+G +  L R VG   A E+
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVG------SFDGGYG-SAYLARQVGQKFAREI 200

Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
             L ++ ++EE   +G ++AVV   EL   +  WA +I  +    +R L
Sbjct: 201 FFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249

Length = 302

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 308 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           ++  A IG G++GSG    A AH L+ +           L   +    AN    + R  L
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
               +   L+ +  +       D D + E+  E   LK ++   + +A  P  I+A++TS
Sbjct: 63  APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            +       + +  +R +  H F+P +++PL+E++  ERT+ + +   M + + +   P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180

Query: 485 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI-----GPFQLLDL 537
            V     GF  +R      + A  LV+ GV     ID AIR FG  I     G F    L
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FGAGIRWSFMGTFLTYTL 239

Query: 538 AG 539
           AG
Sbjct: 240 AG 241

Length = 321

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 16  AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
           A I L NP   N+    +V  +   F  A+S  DV A+V T  G + F  G +   + + 
Sbjct: 39  AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98

Query: 74  HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           + AG+       + L  D+     V+ I  C KP++  V G+ +GGG E+ M     IA 
Sbjct: 99  Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                G      G  P  G T  LP ++G  +A+    L +  ++ +  +LG+I  VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              LKV   +         P + +    D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 57.4 bits (138), Expect = 9e-09
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA+    +      V I+TL  P  +NAL+  +++ L   F        VK ++L G+G 
Sbjct: 5   MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
            F  G D+    +    G+  L  +  S E ++N ++    K  V+ + G+ +GGG  ++
Sbjct: 65  AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
           +    RIA   T   +PE  LG+ P  G +  L RL G 
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163

Length = 381

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 20  LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
           ++N P  +NAL IP+VA LK  +E      D+  +++ G+G  F  G D+     +   G
Sbjct: 56  ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115

Query: 78  DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
           +V         L   V L     KP VA ++G+ +G G  +++    R+   KT    PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175

Query: 136 LTLGVIPGFGGTQRLPRLVG 155
           + +G  P  G +  L RL G
Sbjct: 176 VQMGFHPDAGASYYLSRLPG 195

Length = 407

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
            ++ T  G  FS GFD+   Q    A     +    +  +V  +     P +AAV G A 
Sbjct: 47  VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106

Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGFGGTQRLPRLVGLSKAI------- 160
             G  LA+  H  +   K +  L + E+ +G  +P           + L +A        
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP--------DYFMALLRAKIGSPAAR 157

Query: 161 -EMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +++L +  +T+EE  ++G++D+   S E
Sbjct: 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186

Length = 239

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 43/204 (21%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
             VA ITL  P  +N     IV  + D+ E A     RD D+K IVL G G  FSGG+D 
Sbjct: 13  GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68

Query: 68  NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
                  G G      ++M D           V+            I    KP++A V G
Sbjct: 69  -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRLVGLSKAIEMMLL 165
             +GG  + A+     IA+    +G P   +    + G      L RL  L+K     L 
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW----LYRL-SLAKVKWHSLT 176

Query: 166 SKSITSEEGWKLGLIDAVVTSEEL 189
            + +T  +  +  LI+  V  E L
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERL 200

Length = 298

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 7   TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+E+  D  G A + L     N A    ++  L    ++  S   ++ ++L G G  FS 
Sbjct: 6   TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65

Query: 64  GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G D+   Q+       + + D     EL+ NL    K P +A V+G A GG L L   C 
Sbjct: 66  GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIP 142
             I A   Q  L E+ +G+ P
Sbjct: 125 MAIGADDAQFCLSEVRIGLAP 145

Length = 265

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 13/174 (7%)

Query: 23  PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82
           P +NAL   +   L+  ++      ++  +++ G+G  F  G DI     +   G     
Sbjct: 56  PALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGS---- 111

Query: 83  PDVSVELV------VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136
           PD   E        + L+    KP VA + G+ +GGG  +++    R+A  +T    PE 
Sbjct: 112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPET 171

Query: 137 TLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            +G  P  G +  L  L G L + + +  L   ++  E    GL    + SEE+
Sbjct: 172 IIGFHPDAGASFNLSHLPGRLGEYLGLTGL--KLSGAEMLACGLATHYIRSEEI 223

Length = 401

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 92  NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGF 144
           N IED  +      +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG 
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168

Query: 145 GGTQRL--PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           GG  R+   R V    A     + + +  +   +  L+D VV   +        A ++AA
Sbjct: 169 GGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228

Query: 203 R 203
           +
Sbjct: 229 Q 229

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGFGGTQRL 150
           +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG GG  R+
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178

Length = 550

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	589
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.95
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.89
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.89
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.79
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.78
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.77
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.73
PRK07417	279	arogenate dehydrogenase; Reviewed	99.72
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.71
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.66
PLN02688	266	pyrroline-5-carboxylate reductase	99.64
PRK06545	359	prephenate dehydrogenase; Validated	99.64
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.64
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.63
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.61
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.6
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.59
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.59
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.56
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.55
PRK08507	275	prephenate dehydrogenase; Validated	99.54
PRK08655	437	prephenate dehydrogenase; Provisional	99.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.53
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.51
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.51
PLN02256	304	arogenate dehydrogenase	99.51
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.5
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.49
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.48
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.48
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.47
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.47
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.46
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.45
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.45
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.45
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.44
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.42
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.42
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.4
PRK08818	370	prephenate dehydrogenase; Provisional	99.4
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.39
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.38
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.38
PLN02858	1378	fructose-bisphosphate aldolase	99.38
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.38
PRK07680	273	late competence protein ComER; Validated	99.37
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.37
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.37
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.37
PLN02712	667	arogenate dehydrogenase	99.37
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.36
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.36
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.36
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.35
PLN02858	1378	fructose-bisphosphate aldolase	99.35
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.31
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.31
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.3
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	99.3
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.29
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.28
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.28
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.27
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.26
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.25
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.24
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.24
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.24
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.23
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.22
PLN02712	667	arogenate dehydrogenase	99.21
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.18
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.17
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.16
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.13
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.1
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.08
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.05
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.05
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.04
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.04
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.03
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.01
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.0
PRK06223	307	malate dehydrogenase; Reviewed	98.98
PTZ00117	319	malate dehydrogenase; Provisional	98.98
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.96
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.91
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.88
PRK06444	197	prephenate dehydrogenase; Provisional	98.79
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.78
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.76
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.75
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.75
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.75
PRK12480	330	D-lactate dehydrogenase; Provisional	98.67
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.67
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.66
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.57
PRK10949	618	protease 4; Provisional	98.56
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.56
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.55
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.46
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.44
PRK13243	333	glyoxylate reductase; Reviewed	98.42
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.41
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.4
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.37
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.33
PRK07574	385	formate dehydrogenase; Provisional	98.31
PRK08605	332	D-lactate dehydrogenase; Validated	98.3
PRK06436	303	glycerate dehydrogenase; Provisional	98.3
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.27
PLN03139	386	formate dehydrogenase; Provisional	98.26
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.26
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.25
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.24
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.24
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.24
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.23
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.22
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.2
PRK15076	431	alpha-galactosidase; Provisional	98.19
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.19
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.18
PRK11778	330	putative inner membrane peptidase; Provisional	98.17
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.13
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.1
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.08
PLN02602	350	lactate dehydrogenase	98.07
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.07
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.05
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.04
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.03
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.03
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.03
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.02
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.01
PLN02928	347	oxidoreductase family protein	98.01
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.97
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.94
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.9
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.9
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.84
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.83
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.82
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.81
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.8
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.8
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.79
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.78
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.77
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.76
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.75
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.73
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.72
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.72
PRK05442	326	malate dehydrogenase; Provisional	97.71
PRK06932	314	glycerate dehydrogenase; Provisional	97.71
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.7
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.69
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.69
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.67
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.67
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.67
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.66
PRK06487	317	glycerate dehydrogenase; Provisional	97.66
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.66
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.6
PRK05225	487	ketol-acid reductoisomerase; Validated	97.6
PRK04148	134	hypothetical protein; Provisional	97.59
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.57
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.56
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.56
PRK06141	314	ornithine cyclodeaminase; Validated	97.55
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.55
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.51
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.51
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.5
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.48
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.48
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.48
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.43
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.43
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.42
PLN02306	386	hydroxypyruvate reductase	97.42
PLN00106	323	malate dehydrogenase	97.39
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.39
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.38
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.38
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.36
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.36
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.34
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.34
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.34
PLN02494	477	adenosylhomocysteinase	97.33
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.32
PTZ00325	321	malate dehydrogenase; Provisional	97.32
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.31
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.3
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.27
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.26
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.25
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.23
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.23
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.21
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.21
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.2
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.19
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.18
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.18
PRK08618	325	ornithine cyclodeaminase; Validated	97.17
PRK10949	618	protease 4; Provisional	97.16
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.15
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.14
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.1
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.09
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.08
PRK07340	304	ornithine cyclodeaminase; Validated	97.04
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.04
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.02
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.99
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.97
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.95
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.93
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.92
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	96.92
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.91
PRK08291	330	ectoine utilization protein EutC; Validated	96.88
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.86
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.85
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.83
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.77
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.76
PRK06046	326	alanine dehydrogenase; Validated	96.76
COG2910	211	Putative NADH-flavin reductase [General function p	96.76
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.75
PRK06407	301	ornithine cyclodeaminase; Provisional	96.75
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.73
PLN00203	519	glutamyl-tRNA reductase	96.73
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.73
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.72
PRK05086	312	malate dehydrogenase; Provisional	96.69
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.65
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.65
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.62
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.62
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.57
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.57
PRK06823	315	ornithine cyclodeaminase; Validated	96.53
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.39
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.38
PRK07589	346	ornithine cyclodeaminase; Validated	96.37
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.36
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.36
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.34
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.33
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.26
PRK06199	379	ornithine cyclodeaminase; Validated	96.22
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.2
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.17
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.15
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	96.12
PRK09496	453	trkA potassium transporter peripheral membrane com	96.11
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.1
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.05
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.01
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.96
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.95
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.94
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.93
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.92
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.87
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.87
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.86
PRK09496	453	trkA potassium transporter peripheral membrane com	95.84
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.83
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.79
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.75
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.7
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.67
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.66
PRK10669	558	putative cation:proton antiport protein; Provision	95.66
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.64
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.59
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.56
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.52
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.48
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.46
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.44
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.43
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.43
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.32
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.32
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	95.3
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.29
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.28
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PLN03075	296	nicotianamine synthase; Provisional	95.22
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.16
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.15
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.1
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.08
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.06
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.97
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.91
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.9
PRK06153	393	hypothetical protein; Provisional	94.81
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.79
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	94.78
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.76
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.75
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.74
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PRK06349	426	homoserine dehydrogenase; Provisional	94.52
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.44
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	94.43
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.39
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	94.38
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.36
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.35
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.3
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.29
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.22
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.17
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.16
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.08
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	94.07
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	93.98
PRK06270	341	homoserine dehydrogenase; Provisional	93.97
PRK08374	336	homoserine dehydrogenase; Provisional	93.96
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.9
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	93.87
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.85
PRK12828	239	short chain dehydrogenase; Provisional	93.85
PRK12829	264	short chain dehydrogenase; Provisional	93.82
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.81
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.79
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.73
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.73
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.73
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	93.72
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	93.69
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.68
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.64
PRK13255	218	thiopurine S-methyltransferase; Reviewed	93.62
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.62
PLN00016	378	RNA-binding protein; Provisional	93.59
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.58
COG2344	211	AT-rich DNA-binding protein [General function pred	93.55
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.52
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.49
PRK05868	372	hypothetical protein; Validated	93.46
CHL00194	317	ycf39 Ycf39; Provisional	93.46
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.45
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	93.43
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	93.43
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.42
PRK07877	722	hypothetical protein; Provisional	93.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.32
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.31
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.27
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.26
PRK07236	386	hypothetical protein; Provisional	93.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.16
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.14
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.13
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	93.11
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.1
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	93.09
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.04
PRK05854	313	short chain dehydrogenase; Provisional	93.03
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.99
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	92.96
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	92.93
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.9

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=6.7e-111  Score=941.52  Aligned_cols=578  Identities=35%  Similarity=0.542  Sum_probs=517.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |+++++.+++ +++|++|+||||+  .|++|.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus        10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~   88 (737)
T TIGR02441        10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ   88 (737)
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence            6778899998 8899999999996  6999999999999999999999999975 5699999999999999986421111


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcC
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ....+....++++ .++.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|++|++++|||++|
T Consensus        89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence            1122223344566 6799999999999999999999999999999999987  589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------hHHHHHHHHHHHHHHhcChhhhhhhhc-cCCCCCh-
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHR-TDKLGSL-  220 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~-~~~~~~~-  220 (589)
                      ..+|++|++||++++|+||+++||||+|||+             +++.+.|.+++++++..+... +.... ..+...+ 
T Consensus       168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~-~~~~~~~~~~~~~~  246 (737)
T TIGR02441       168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSI-NRDKGLVHKITQYV  246 (737)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCc-cccccccCccchhh
Confidence            9999999999999999999999999999987             567888888888876543221 11110 0011000 


Q ss_pred             ----HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          221 ----SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       221 ----~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                          ......+..++.+ .+++++|||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~  326 (737)
T TIGR02441       247 MTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKN  326 (737)
T ss_pred             cccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC
Confidence                1122334444444 45788899999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc
Q 007805          296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  375 (589)
Q Consensus       296 ~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  375 (589)
                      +.    +.+++.|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++
T Consensus       327 ~~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~  402 (737)
T TIGR02441       327 KF----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN  402 (737)
T ss_pred             CC----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence            53    22457899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe
Q 007805          376 LKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL  455 (589)
Q Consensus       376 i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l  455 (589)
                      ++.+++++++++||+|||||||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+++
T Consensus       403 i~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~L  482 (737)
T TIGR02441       403 LTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQL  482 (737)
T ss_pred             eEEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL  535 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~  535 (589)
                      |||++++.|++++++.+.++++.+||.||+++|.||||+||++.++++||++++++|++++|||+++.++|||||||+++
T Consensus       483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~  562 (737)
T TIGR02441       483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLA  562 (737)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          536 DLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       536 D~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                      |++|||+++++.+.+++.+++++.  |++++++|+++|++|+   +|||+|++++
T Consensus       563 D~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~  617 (737)
T TIGR02441       563 DEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK  617 (737)
T ss_pred             HHhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence            999999999999999999988653  6899999999999999   9999998664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=2.7e-110  Score=935.06  Aligned_cols=579  Identities=31%  Similarity=0.507  Sum_probs=517.6

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 007805            1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~--~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |++.  ++.++..+++|++|+|||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   80 (714)
T TIGR02437         1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP   80 (714)
T ss_pred             CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence            5555  5777754689999999999 579999999999999999999999999999999999999999999985421111


Q ss_pred             --cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                        ....+....++++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG  159 (714)
T TIGR02437        81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG  159 (714)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence              1112222344566 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCC----hHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR  231 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  231 (589)
                      ..+|++|++||++++|++|+++||||++||++++.+++.++++++....+.+.+..  ..+...    ...........+
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  237 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK  237 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988766432211111  001111    011111133334


Q ss_pred             H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccce
Q 007805          232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (589)
Q Consensus       232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~k  310 (589)
                      . ..+++.++||||..+.++++++...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+..  ....++.+++
T Consensus       238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~  315 (714)
T TIGR02437       238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ  315 (714)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence            4 456789999999999999999999999999999999999999999999999999999999876522  1235678999


Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (589)
                      |+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++++.+++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (714)
T TIGR02437       316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI  395 (714)
T ss_pred             EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHH
Q 007805          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (589)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~  470 (589)
                      |||||||++++|+++|++|++++++++|++||||++++++++..+++|+||+|+|||||++.+++|||++++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~  475 (714)
T TIGR02437       396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA  475 (714)
T ss_pred             EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHH
Q 007805          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (589)
Q Consensus       471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~  549 (589)
                      .+.++++.+||.||+++|.||||+||++.++++||++++++|+++++||+++ .++|||||||+++|++|||+.+++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~  555 (714)
T TIGR02437       476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV  555 (714)
T ss_pred             HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          550 FDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      ++..+++++.  +++++++|+++|++|+   +|||+|+.+
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~  595 (714)
T TIGR02437       556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEAD  595 (714)
T ss_pred             HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccC
Confidence            9999887642  5689999999999999   999999643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3.2e-110  Score=937.17  Aligned_cols=579  Identities=32%  Similarity=0.527  Sum_probs=517.8

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 007805            1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~--~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |++.  ++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   80 (715)
T PRK11730          1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP   80 (715)
T ss_pred             CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence            6654  57777436899999999995 79999999999999999999999999999999999999999999875421111


Q ss_pred             --cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                        ....+.....+++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG  159 (715)
T PRK11730         81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG  159 (715)
T ss_pred             HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence              0112222333455 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCC----hHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR  231 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  231 (589)
                      ..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+....  ..+.++    +......++..+
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k  237 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAK  237 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998753221111  001011    011122333333


Q ss_pred             HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccce
Q 007805          232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (589)
Q Consensus       232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~k  310 (589)
                      +. .|++.++||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+...  ..+++.|++
T Consensus       238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~  315 (715)
T PRK11730        238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ  315 (715)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence            33 367889999999999999999999999999999999999999999999999999999998765321  124567999


Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (589)
                      |+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+.+.+++|.+++.+.+..+++++++++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (715)
T PRK11730        316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV  395 (715)
T ss_pred             EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHH
Q 007805          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (589)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~  470 (589)
                      |||||||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~  475 (715)
T PRK11730        396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA  475 (715)
T ss_pred             EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHH
Q 007805          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (589)
Q Consensus       471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~  549 (589)
                      .+.++++.+||.||+++|.||||+||++.++++||++++++|.+++|||+++ .++|||+|||+++|.+|||+++++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~  555 (715)
T PRK11730        476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV  555 (715)
T ss_pred             HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          550 FDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      ++..+++++.  +++++++|+++|++|+   +|||+|+.+
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~  595 (715)
T PRK11730        556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED  595 (715)
T ss_pred             HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence            9999888643  5789999999999999   999999744

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=6.6e-109  Score=924.42  Aligned_cols=561  Identities=36%  Similarity=0.591  Sum_probs=507.6

Q ss_pred             EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p-~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.++..+++|++|||||| + .|++|.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus         2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (699)
T TIGR02440         2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL   81 (699)
T ss_pred             eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence            344554789999999999 4 699999999999999999999999999987 6888999999999987542111111122


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      ....+.++ ..+.++||||||+|||+|+|||++|+|+||+|||+++  ++|++||+++|++|++|++++|+|++|..+|+
T Consensus        82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~  160 (699)
T TIGR02440        82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL  160 (699)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence            22334555 6799999999999999999999999999999999976  79999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHH-------------HHhcChhhhhhhhccCCCCChHHHHHHH
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD-------------IAARRKPWIRSLHRTDKLGSLSEAREVL  227 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~-------------la~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (589)
                      +|++||++++|++|+++||||++||++++++++.++|++             +++.+|.+.               ....
T Consensus       161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~~  225 (699)
T TIGR02440       161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGR---------------ALLF  225 (699)
T ss_pred             HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhH---------------HHHH
Confidence            999999999999999999999999999999999999984             222222111               1112


Q ss_pred             HHH-HHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCC
Q 007805          228 KLA-RLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPR  306 (589)
Q Consensus       228 ~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~  306 (589)
                      ..+ +...|++.++|||+.++|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. .  ..+.
T Consensus       226 ~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~  302 (699)
T TIGR02440       226 DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPA  302 (699)
T ss_pred             HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcc
Confidence            222 23346788999999999999999999999999999999999999999999999999999999876552 2  2346


Q ss_pred             ccceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ++++|+|||+|+||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+.+++++++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  382 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF  382 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence            7999999999999999999998 589999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      ++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|+
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~  462 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS  462 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA  545 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~  545 (589)
                      +++++.+.++++.+||.||+++|.||||+||++.++++||++++++|++++|||+++.++|||+|||+++|.+|||++++
T Consensus       463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~  542 (699)
T TIGR02440       463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAK  542 (699)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       546 ~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                      +++.+++.+++++.|++++++||++|++|+   +|||+|+.++
T Consensus       543 i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~  585 (699)
T TIGR02440       543 ISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAAT  585 (699)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCCcEEEeCCCCC
Confidence            999999999998889999999999999999   9999998653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.2e-107  Score=916.65  Aligned_cols=574  Identities=35%  Similarity=0.560  Sum_probs=509.6

Q ss_pred             cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 007805            5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         5 ~~~~~~~~~~v~~i~l~~p--~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.++.++++|++|+||||  +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~   85 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA   85 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence            4667775689999999999  47999999999999999999999999999999864 89999999998754221111112


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      +....++++ +++.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A  164 (708)
T PRK11154         86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA  164 (708)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence            222334455 6799999999999999999999999999999999986  4899999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH-HHHhC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ-AKKTA  238 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  238 (589)
                      ++|++||++++|+||+++||||++||++++.+++.++|+++....+ .+....+....++. .....+..++.+ .++++
T Consensus       165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~  242 (708)
T PRK11154        165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPL-GRALLFKQARKKTLAKTQ  242 (708)
T ss_pred             HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999988421110 00000000000000 111123333333 45788


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL  318 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~  318 (589)
                      ++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. +  ..+..++||+|||+|+
T Consensus       243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~  319 (708)
T PRK11154        243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL  319 (708)
T ss_pred             cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence            899999999999999999999999999999999999999999999999999998876542 2  2446799999999999


Q ss_pred             CcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccC
Q 007805          319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE  397 (589)
Q Consensus       319 mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe  397 (589)
                      ||++||..++ .+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus       320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E  399 (708)
T PRK11154        320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE  399 (708)
T ss_pred             hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence            9999999999 889999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHH
Q 007805          398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK  477 (589)
Q Consensus       398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~  477 (589)
                      ++++|+++|++|+++++|++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++.+.++++
T Consensus       400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~  479 (708)
T PRK11154        400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK  479 (708)
T ss_pred             cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 007805          478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR  557 (589)
Q Consensus       478 ~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~  557 (589)
                      .+||.|++++|.||||+||++.+++|||++++++|++++|||.++.++|||+|||+++|.+|||+++++++.+++.++++
T Consensus       480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~  559 (708)
T PRK11154        480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER  559 (708)
T ss_pred             HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999887


Q ss_pred             CCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          558 SFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       558 ~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      +.|++++++|+++|++|+   +|||+|+.+
T Consensus       560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~  589 (708)
T PRK11154        560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK  589 (708)
T ss_pred             CCCCHHHHHHHHCCCCcccCCceEEECCCC
Confidence            778999999999999999   999999853

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=1.6e-64  Score=502.63  Aligned_cols=277  Identities=40%  Similarity=0.651  Sum_probs=268.3

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .|++|+|||+|.||++||..++..|++|+++|++++.++++...+.+.+.+.+++|++++++.+..+++++.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            58999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+|||||||++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.|++||++++..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~  544 (589)
                      ++++++.++.+.+||.|++++|.||||+||++.++++||++++++|+ ++++||+++ .++|||||||+++|++|+|+++
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999996 999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CC-chHHHHHHHHcCCCCc---ccceeeCC
Q 007805          545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGN---KGFSFLFV  583 (589)
Q Consensus       545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~---~Gfy~y~~  583 (589)
                      ++++.+++.++++ .+ |++++++|++.|++|+   +|||+|+.
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999988843 33 7899999999999999   99999984

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-64  Score=458.60  Aligned_cols=278  Identities=32%  Similarity=0.543  Sum_probs=265.2

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-----HHHHhhccccc
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGV  379 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~  379 (589)
                      ...+++|+|||+|.||++||+..+.+|++|+++|.|++.+.++.+.|.+.+.+..+++..+...     .+..+++|..+
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            3468899999999999999999999999999999999999999999999999999988876444     36778999999


Q ss_pred             CCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE
Q 007805          380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI  458 (589)
Q Consensus       380 ~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei  458 (589)
                      +|. ++++++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++...++|.||.|+|||||+.+|+++|+
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEV  167 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEV  167 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhh
Confidence            998 7789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHH
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLD  536 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D  536 (589)
                      ++++.|++|+++.+..+.+.+||++|-++|.||||+||++.+|++||++++|.|. +-+|||.+| .|.|+||||||+.|
T Consensus       168 ir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~D  247 (298)
T KOG2304|consen  168 IRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELAD  247 (298)
T ss_pred             hcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997 999999999 89999999999999


Q ss_pred             HhchHHHHHHHHHHHHhCCCC--CCchHHHHHHHHcCCCCc---ccceeeC
Q 007805          537 LAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       537 ~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~g~~G~---~Gfy~y~  582 (589)
                      .+|||++..+++.|++.++++  +.|+|++.++|++|++||   +|||+|.
T Consensus       248 yvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  248 YVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             HhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            999999999999999999775  349999999999999999   9999994

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.3e-59  Score=473.12  Aligned_cols=276  Identities=33%  Similarity=0.525  Sum_probs=267.1

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +.+++|+|||+|.||.+||..++.+|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++.+++++++
T Consensus         3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhC-CCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t  464 (589)
                      ++||+|||||||+.++|+++|.++++++ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T  162 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT  162 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence            9999999999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH-HcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805          465 SAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (589)
Q Consensus       465 ~~e~~~~~~~l~~-~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld  541 (589)
                      ++++++++.+++. .+||.|++++|.|||++||++.+++|||++|+++|+ +++|||+++ .++|||+|||+++|.+|+|
T Consensus       163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld  242 (286)
T PRK07819        163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD  242 (286)
T ss_pred             CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence            9999999999988 599999999999999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceee
Q 007805          542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFL  581 (589)
Q Consensus       542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y  581 (589)
                      +++++++.+++.+++++ .|++++++|+++|++|+   +|||+|
T Consensus       243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            99999999999998754 58999999999999999   999998

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=3.5e-56  Score=479.72  Aligned_cols=279  Identities=36%  Similarity=0.522  Sum_probs=267.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +++||+|||+|+||++||..++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+|||||||+.++|+++|.++.+++++++||+||||++++++++..+.+|.|++|+|||+|++.++++|+++++.|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~  544 (589)
                      ++++.+.++++.+||.|++++|.|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|||+.+
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999985 999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhC-CCC-CCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          545 ATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       545 ~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                      ++.+++++.+ +++ +.|++++++|+++|++|+   +|||+|+.++
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~  289 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEA  289 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCC
Confidence            9999998874 554 447899999999999999   9999998653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.1e-55  Score=448.55  Aligned_cols=276  Identities=28%  Similarity=0.412  Sum_probs=262.3

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHHhhcccccCCc-cC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~  384 (589)
                      .++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.+....+.+.++..+ .+....+++.++++ ++
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            47899999999999999999999999999999999999999999988889999998888776 66667889999998 57


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t  464 (589)
                      +++||+||+|+||+.++|+++++++.+.+++++||+||+|+++++++.+.+.+++||+|+|||+|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (589)
Q Consensus       465 ~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld  541 (589)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeC
Q 007805          542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~  582 (589)
                      +++++++++++.++++++  |++++++||++|++|+   +|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988753  8899999999999999   9999995

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.1e-54  Score=469.79  Aligned_cols=279  Identities=34%  Similarity=0.526  Sum_probs=267.2

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +++++|+|||+|.||++||..++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.+++++.+
T Consensus         5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~   84 (507)
T PRK08268          5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL   84 (507)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      ++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|+
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts  164 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD  164 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~  543 (589)
                      +++++.+.++++.+||.|++++|.|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|+|+.
T Consensus       165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~  244 (507)
T PRK08268        165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN  244 (507)
T ss_pred             HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999985 999999999 789999999999999999999


Q ss_pred             HHHHHHHHHhC-CC-CCCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          544 AATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       544 ~~~~~~l~~~~-~~-~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      +++.+.+++.+ ++ ++.|++++++|+++|++|+   +|||+|+.+
T Consensus       245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~  290 (507)
T PRK08268        245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADG  290 (507)
T ss_pred             HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCC
Confidence            99999998875 34 4557899999999999999   999999755

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.9e-54  Score=440.04  Aligned_cols=278  Identities=31%  Similarity=0.470  Sum_probs=265.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +++|+|||+|.||.+||..++++|++|++||++++.++++.+++...+...++.|.+++.+.+....+++.++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            578999999999999999999999999999999999999988888888888889999988888888889988888 6799


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+||+|+|++.++|+.++.++.+++++++|+++|+|+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~  544 (589)
                      ++++.++++++.+|+.|++++|.|||++||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 7999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                      ++.+.+++.+++++.|++++.+|+++|++|+   +|||+|+++.
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  284 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE  284 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence            9999999999887779999999999999999   9999998753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.4e-54  Score=439.84  Aligned_cols=275  Identities=36%  Similarity=0.582  Sum_probs=264.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .|+||+|||+|.||++||..++++|++|++||++++.++++.+++++.++...+.|.++..+.+....+++.+++++.++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999999888888888898888887789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+||||+||++++|+++++++.++++++++|+|+||+++++.+++.++++.|++++||++|++.++++|+++++.|++
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~  161 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD  161 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~  544 (589)
                      ++++.+.++++.+|+.|++++|.|||+.||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus       162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  241 (282)
T PRK05808        162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL  241 (282)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceee
Q 007805          545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFL  581 (589)
Q Consensus       545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y  581 (589)
                      ++++.+++.++++. .|++++++|+++|++|+   +|||+|
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            99999999998754 58899999999999999   999998

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.1e-54  Score=439.15  Aligned_cols=275  Identities=31%  Similarity=0.537  Sum_probs=259.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      ++++|+|||+|+||++||..++++|++|++||++++.++++.+++++   .+...++.|.+++.+.+..+.++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            47899999999999999999999999999999999999988877766   366778889888888888888888888887


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~  463 (589)
                      ++++||+||||+||+.++|+++++++.+++++++||+||||++++++++..+.+++|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld  541 (589)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc-c-------cceee
Q 007805          542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN-K-------GFSFL  581 (589)
Q Consensus       542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~-~-------Gfy~y  581 (589)
                      ++.++++.+++.+++++ .|+++|++|+++|++|+ .       |||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            99999999999998865 48899999999999988 4       89998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=7.7e-54  Score=437.30  Aligned_cols=278  Identities=32%  Similarity=0.527  Sum_probs=266.4

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++.++++++.|.+++.+.+..+++++++++.++++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999988888888888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+|||||||++++|+.+|+++.+++++++||+||||+++++++++.+.++.+++++||++||+.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~  544 (589)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      ++++.+++.+++++ .|++++++|+++|++|+   +|||+|+++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~  286 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGK  286 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCC
Confidence            99999999998754 58999999999999999   999999864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.9e-53  Score=433.80  Aligned_cols=279  Identities=31%  Similarity=0.475  Sum_probs=265.0

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ++++||+|||+|.||.+||..++++|++|++||++++.++++.++++..+...++.|.++..+.+..+.+++.+++++.+
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            45789999999999999999999999999999999999999989899999989999999888877778889988888889


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      ++||+||+||||+.++|+.+++++.+.++++++|+||||+++++.+++.+.+++|++|+||++|++.++++|++++..|+
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~  161 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD  161 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~  543 (589)
                      +++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus       162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~  241 (292)
T PRK07530        162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC  241 (292)
T ss_pred             HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999998 999999999 799999999999999999999


Q ss_pred             HHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          544 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       544 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      .++++.+++.++++. .|++++.+|+++|++|+   +|||+|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            999999999998754 58899999999999999   999999654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.6e-53  Score=432.18  Aligned_cols=275  Identities=23%  Similarity=0.307  Sum_probs=245.7

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.+++|+|||+|+||++||..++.+|++|++||++++.++.+.+++.+.+..+.+.| +.+   ....++++.++++ ++
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence            568999999999999999999999999999999999999999899998888888877 332   2334688888888 67


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t  464 (589)
                      +++||+|||||||++++|+++|+++.+++++++||+||||+++++++++.+.+|+||+++||||||+.+++|||++++.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHh
Q 007805          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (589)
Q Consensus       465 ~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~  538 (589)
                      ++++++.+.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+|   +|||+++|++
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 799999999999999999999999997 999999999 799998   8999999999


Q ss_pred             chHH-HHHHHHHHHHhCCCC---CCchHHHHHHHH------cCCCCc---ccceeeCCC
Q 007805          539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGN---KGFSFLFVF  584 (589)
Q Consensus       539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~---~Gfy~y~~~  584 (589)
                      |+|. +.+.++++.+.+.+.   ..+|++..+|++      ++.+|.   .++|+|.+.
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~  299 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRDE  299 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9998 555666665554322   224556667766      577876   789888643

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-52  Score=396.16  Aligned_cols=246  Identities=33%  Similarity=0.525  Sum_probs=224.0

Q ss_pred             EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 007805           10 VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (589)
Q Consensus        10 ~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (589)
                      ..+++|+.|+||||+ +|+++..++.+|.+++..+++|+.+.++||||.|+.||+|+|++++......+...   ..+.+
T Consensus        42 ~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~~~~~  118 (290)
T KOG1680|consen   42 GEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---GIFLR  118 (290)
T ss_pred             ecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---ccccc
Confidence            337899999999997 79999999999999999999999999999999999999999999997643322111   11223


Q ss_pred             HHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCC
Q 007805           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS  168 (589)
Q Consensus        89 ~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~  168 (589)
                      .+ ..+.+.+||+||+|||+|+|||+||+|+||+|||+++|+|++++.++|++|.||||++|+|.+|..+|+++++||++
T Consensus       119 ~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~  197 (290)
T KOG1680|consen  119 VW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRR  197 (290)
T ss_pred             hh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCc
Confidence            33 44558999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007805          169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACL  248 (589)
Q Consensus       169 ~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  248 (589)
                      ++|+||+++||||+|||.++++.+|.+|+++|++.|+..++                                    +.|
T Consensus       198 ~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~~K  241 (290)
T KOG1680|consen  198 LGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------ADK  241 (290)
T ss_pred             ccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------HHH
Confidence            99999999999999999999999999999999999986554                                    557


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          249 DVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       249 ~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                      ++++.+.+.++..++..|...|...+.++|.+|++.+|.+||++++.
T Consensus       242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~  288 (290)
T KOG1680|consen  242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS  288 (290)
T ss_pred             HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence            88999999999999999999999999999999999999999999874

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.9e-51  Score=419.19  Aligned_cols=265  Identities=28%  Similarity=0.383  Sum_probs=253.0

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCCCCC
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV  388 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a  388 (589)
                      ||++||..++.+|++|++||++++       .++++.+++++.+++++++|.+++++.+..+++++++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       477799999999999999999999999999999998865  3 678999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHH
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV  468 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~  468 (589)
                      |+|||||||+.++|+++|++|.+.+++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHhchHHH
Q 007805          469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA  543 (589)
Q Consensus       469 ~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~Gld~~  543 (589)
                      ++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.++ .++|||   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999985 999999999 799999   699999999999999


Q ss_pred             HHHHHHHHHhCCC-CCCchHHHHHHHHcCCCCc---ccceeeCC
Q 007805          544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGN---KGFSFLFV  583 (589)
Q Consensus       544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~---~Gfy~y~~  583 (589)
                      +++++.+++.+++ ++.|++++++|+++|++|+   +|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            9999999999988 5568999999999999999   99999975

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-51  Score=407.73  Aligned_cols=253  Identities=30%  Similarity=0.470  Sum_probs=228.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~   76 (257)
T PRK05862          1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M   76 (257)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence            7888899998 7899999999996 699999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+.......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  155 (257)
T PRK05862         77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence            11112223445 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+++                              
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  205 (257)
T PRK05862        156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------  205 (257)
T ss_pred             HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....++.++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~  254 (257)
T PRK05862        206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF  254 (257)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence                  5577888877788999999999999999999999999999999998774

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-51  Score=408.46  Aligned_cols=252  Identities=40%  Similarity=0.659  Sum_probs=226.5

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         5 ~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      ++.+++ +++|++|+||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++...........+..
T Consensus         3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (257)
T PRK07658          3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ   81 (257)
T ss_pred             eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence            688888 8899999999998899999999999999999999999999999999999999999998754322111111222


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ....++ +++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  160 (257)
T PRK07658         82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML  160 (257)
T ss_pred             HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence            334555 6789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      +|++++|+||+++||||+|||++++.+++.++++++++.||.+++                                   
T Consensus       161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------------------  205 (257)
T PRK07658        161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR-----------------------------------  205 (257)
T ss_pred             cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999876443                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|++++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus       206 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  254 (257)
T PRK07658        206 -AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF  254 (257)
T ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence             4567787777778999999999999999999999999999999998875

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.3e-50  Score=405.43  Aligned_cols=255  Identities=33%  Similarity=0.546  Sum_probs=230.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK05809          1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE   78 (260)
T ss_pred             CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence            8999999999 7899999999996 6999999999999999999999999999999999 89999999998754221 11


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  157 (260)
T PRK05809         79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            111222233555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  208 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK-----------------------------  208 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999876543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|+.++.....++.++++.|.+.+..++.++|+++++++|++||+|++
T Consensus       209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  257 (260)
T PRK05809        209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF  257 (260)
T ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                   4577888887888999999999999999999999999999999998774

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-50  Score=405.84  Aligned_cols=254  Identities=33%  Similarity=0.548  Sum_probs=226.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ +.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|.|++++........
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~   78 (260)
T PRK05980          1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA   78 (260)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence            66 4688888 8899999999995 7999999999999999999999999999999998 69999999998754211110


Q ss_pred             ---ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           79 ---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        79 ---~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                         ...+.....+++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (260)
T PRK05980         79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG  157 (260)
T ss_pred             hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence               111222223455 6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++++++|++++|+||+++||||+|||++++++++.++++++++.||.+++                          
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  211 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA--------------------------  211 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999886543                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~  293 (589)
                                .+|++++.....++.++++.|.+.+..++.++|+++++.+|++||+|+
T Consensus       212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence                      456777777778899999999999999999999999999999999876

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-50  Score=404.20  Aligned_cols=251  Identities=31%  Similarity=0.481  Sum_probs=225.1

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccc
Q 007805            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus         5 ~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      .+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++...... ....+.
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~   81 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA-VAREMA   81 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh-hHHHHH
Confidence            588888 78999999999988999999999999999999999999999999998 689999999987542111 111122


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~  163 (589)
                      .....++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  160 (258)
T PRK09076         82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI  160 (258)
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            2233455 678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (589)
                      ++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                                  
T Consensus       161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------  206 (258)
T PRK09076        161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA----------------------------------  206 (258)
T ss_pred             HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999986544                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                        .+|++++.....++.+.++.|.+.+..++.++|+++++++|++||+|++
T Consensus       207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence              4567777777778999999999999999999999999999999998875

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-50  Score=404.99  Aligned_cols=255  Identities=25%  Similarity=0.380  Sum_probs=227.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (589)
                      |+|+.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence            8888999998 7899999999996 79999999999999999999 99999999999999999999999875321111  


Q ss_pred             cc-cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        78 ~~-~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                      .. ..+......++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  157 (262)
T PRK08140         79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM  157 (262)
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence            00 01111122344 67889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .++++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++                           
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~---------------------------  210 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA---------------------------  210 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999876543                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                               .+|+.++.....++.++++.|...+..++.++|+++++.+|++||+|++
T Consensus       211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                     4567788777788999999999999999999999999999999998775

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-50  Score=408.06  Aligned_cols=256  Identities=28%  Similarity=0.420  Sum_probs=226.5

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--   76 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--   76 (589)
                      |+ ++++.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06142          2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG   80 (272)
T ss_pred             CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence            55 57899998 8999999999995 7999999999999999999999999999999999999999999987542110  


Q ss_pred             ----Cc-ccc---cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805           77 ----GD-VSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (589)
Q Consensus        77 ----~~-~~~---~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~  148 (589)
                          .. ...   ......+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~  159 (272)
T PRK06142         81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ  159 (272)
T ss_pred             ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence                00 011   111223455 668999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHH
Q 007805          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL  227 (589)
Q Consensus       149 ~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (589)
                      +||+++|..+|++|+++|++++|+||+++||||+|||+ +++++++.+++++|++.||.+++                  
T Consensus       160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------  221 (272)
T PRK06142        160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------  221 (272)
T ss_pred             HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence            99999999999999999999999999999999999985 88999999999999999886554                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                        .+|+.++.....++.++++.|...+..++.|+|++|++.+|++||+|++
T Consensus       222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~  270 (272)
T PRK06142        222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF  270 (272)
T ss_pred             ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                              4567777777778999999999999999999999999999999998774

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-50  Score=402.46  Aligned_cols=252  Identities=25%  Similarity=0.407  Sum_probs=224.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+..+++++..+++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   81 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS   81 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence            677889999757899999999996 6999999999999999999999999999999998 69999999998754221 11


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~  159 (256)
T PRK06143         82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR  159 (256)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence            111222334555 6789999999999999999999999999999999999999999999998 88888999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                             
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  210 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR-----------------------------  210 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                             .+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+
T Consensus       211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence                   4567777777788999999999999999999999999999999975

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-50  Score=400.75  Aligned_cols=251  Identities=28%  Similarity=0.426  Sum_probs=223.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++...... .....
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~   77 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH   77 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence            4578888 7899999999996 79999999999999999997  789999999999999999999998542211 11111


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  156 (255)
T PRK08150         78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM  156 (255)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            22334555 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                 
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  203 (255)
T PRK08150        157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF---------------------------------  203 (255)
T ss_pred             HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986543                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                         .+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+..
T Consensus       204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~  253 (255)
T PRK08150        204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK  253 (255)
T ss_pred             ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence               45677777777889999999999999999999999999999999988753

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=4.1e-50  Score=400.09  Aligned_cols=251  Identities=31%  Similarity=0.461  Sum_probs=225.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      ||  .+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~   74 (255)
T PRK09674          1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A   74 (255)
T ss_pred             Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence            55  477888 7899999999996 699999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  153 (255)
T PRK09674         75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  153 (255)
T ss_pred             hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence            11112223455 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                              
T Consensus       154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  203 (255)
T PRK09674        154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------  203 (255)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|+.++.....++.+.++.|.+.+..++.++|+++++++|++||+|++
T Consensus       204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~  252 (255)
T PRK09674        204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF  252 (255)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                  4567777777788999999999999999999999999999999998775

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-50  Score=401.17  Aligned_cols=255  Identities=26%  Similarity=0.366  Sum_probs=225.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence            8899999999 8899999999996 6999999999999999999999999999999999999999999987532111100


Q ss_pred             ccc--chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        80 ~~~--~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ...  .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~  157 (262)
T PRK05995         80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER  157 (262)
T ss_pred             hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence            111  12233555 67899999999999999999999999999999999999999999999999988765 589999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.||.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  209 (262)
T PRK05995        158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR----------------------------  209 (262)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||++++
T Consensus       210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~  259 (262)
T PRK05995        210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW  259 (262)
T ss_pred             --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                    44677777767788888 88899999999999999999999999998875

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.9e-50  Score=402.22  Aligned_cols=255  Identities=23%  Similarity=0.340  Sum_probs=225.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |..+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF   86 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence            3457788998 8899999999996 6999999999999999999999999999999999999999999987542211111


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            11122233455 678999999999999999999999999999999999999999999999999765 5789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++                              
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  214 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------  214 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886544                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus       215 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        215 ------IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4577888888888999999999999999999999999999999998775

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-50  Score=403.05  Aligned_cols=256  Identities=24%  Similarity=0.330  Sum_probs=228.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-   77 (589)
                      |+|+.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence            8999999999 7899999999996 79999999999999999999876 499999999999999999999875422111 


Q ss_pred             ---c-ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh
Q 007805           78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (589)
Q Consensus        78 ---~-~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~  153 (589)
                         . ...+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence               0 011112233455 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH
Q 007805          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (589)
Q Consensus       154 ~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (589)
                      +|..++++|+++|++++|+||+++||||+|||++++++++.++++++++.||.+++                        
T Consensus       159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------  214 (266)
T PRK05981        159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------  214 (266)
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999998875543                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                  .+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus       215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                        4467777777778999999999999999999999999999999998875

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-50  Score=399.91  Aligned_cols=251  Identities=24%  Similarity=0.344  Sum_probs=221.6

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      |.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus         1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~   78 (255)
T PRK06563          1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE   78 (255)
T ss_pred             CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence            35677 7899999999996 79999999999999999999999999999999999999999999875421111 111111


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            12233323578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|+||+++||||+|||++++.+++.++++++++.||.+++                                   
T Consensus       159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  203 (255)
T PRK06563        159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ-----------------------------------  203 (255)
T ss_pred             cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999886543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|++++.....++.++++.|...+..++.++|+++++++|++||+|++
T Consensus       204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  252 (255)
T PRK06563        204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF  252 (255)
T ss_pred             -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence             4467777777778999999999999999999999999999999998774

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.9e-50  Score=400.68  Aligned_cols=256  Identities=20%  Similarity=0.271  Sum_probs=222.3

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ |+++.++.++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   80 (265)
T PRK05674          1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY   80 (265)
T ss_pred             CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            44 8999999844789999999995 799999999999999999999999999999999999999999998753211110


Q ss_pred             ccc--cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        79 ~~~--~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                      ...  ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.
T Consensus        81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~  158 (265)
T PRK05674         81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE  158 (265)
T ss_pred             hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence            011  111233455 67899999999999999999999999999999999999999999999999988765 58999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .+++++++||++++|+||+++||||+|||++++.+++.++++++++.||.+++                           
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------  211 (265)
T PRK05674        159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR---------------------------  211 (265)
T ss_pred             HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999986554                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                               .+|+.++.....++.+++.. |.+.+..++.|+|+++++++|++||++++
T Consensus       212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~  261 (265)
T PRK05674        212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW  261 (265)
T ss_pred             ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence                     45677777777778888765 45788889999999999999999998875

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-50  Score=402.33  Aligned_cols=255  Identities=27%  Similarity=0.364  Sum_probs=225.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--   76 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~-~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--   76 (589)
                      || +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++......  
T Consensus         1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (266)
T PRK09245          1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG   78 (266)
T ss_pred             CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            66 5688998 7899999999996 699995 9999999999999999999999999999999999999987542111  


Q ss_pred             -Ccc---cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhh
Q 007805           77 -GDV---SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR  152 (589)
Q Consensus        77 -~~~---~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~  152 (589)
                       ...   ..+......++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~  157 (266)
T PRK09245         79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR  157 (266)
T ss_pred             ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence             000   01111123445 6788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHH
Q 007805          153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (589)
Q Consensus       153 ~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (589)
                      ++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++                       
T Consensus       158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------  214 (266)
T PRK09245        158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR-----------------------  214 (266)
T ss_pred             HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence            999999999999999999999999999999999999999999999999999986554                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                   .+|++++.....++++.++.|.+.+..++.++|+++++++|++||+|.+
T Consensus       215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK09245        215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF  263 (266)
T ss_pred             -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence                         4567777777778899999999999999999999999999999998875

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-50  Score=400.50  Aligned_cols=255  Identities=30%  Similarity=0.492  Sum_probs=227.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ +++.+++.+++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|+ +||+|.|++++..... ..
T Consensus         1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK07657          1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ   78 (260)
T ss_pred             CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence            76 588888646899999999996 79999999999999999999999999999999994 9999999998753211 11


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  157 (260)
T PRK07657         79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence            112222334555 6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      +++++++|++++|+||+++||||++||++++++++.++++++++.||.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------------  208 (260)
T PRK07657        158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR-----------------------------  208 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence                   4567788777788999999999999999999999999999999998775

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-50  Score=399.27  Aligned_cols=253  Identities=32%  Similarity=0.472  Sum_probs=225.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~   79 (589)
                      |+|+.+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|.|++++...... ...
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   79 (257)
T PRK06495          1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL   79 (257)
T ss_pred             CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence            7889999998 88999999999989999999999999999999999999999999999999999999987542111 111


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ........+++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|..+|
T Consensus        80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            11112233455 67899999999999999999999999999999999999999999999996   456789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||++||++++.+++.++++++++.||.+++                              
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  205 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------  205 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence                  4466777777778999999999999999999999999999999999885

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-50  Score=399.02  Aligned_cols=252  Identities=31%  Similarity=0.436  Sum_probs=223.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06494          1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-   78 (259)
T ss_pred             CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence            8899999998 7899999999997 6999999999999999999999999999999998 6999999999875422111 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        ........+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  154 (259)
T PRK06494         79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR  154 (259)
T ss_pred             --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence              0011122222 3 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||++||++++++++.++++++++.||.+++                             
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  205 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR-----------------------------  205 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|++++.....+++++++.|  ...+..++.++|+++++.+|++||++++
T Consensus       206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~  256 (259)
T PRK06494        206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW  256 (259)
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   456777777777899999999  5678999999999999999999988775

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-49  Score=398.23  Aligned_cols=251  Identities=32%  Similarity=0.469  Sum_probs=225.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +++.++.++++|++|+||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++.....   ...+
T Consensus         7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~   83 (261)
T PRK08138          7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY   83 (261)
T ss_pred             CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence            567888756889999999996 699999999999999999999999999999999999999999998754211   1112


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      .....+++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  162 (261)
T PRK08138         84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM  162 (261)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence            22234555 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                                 
T Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------  209 (261)
T PRK08138        163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALA---------------------------------  209 (261)
T ss_pred             HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999988875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                         .+|++++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus       210 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~  258 (261)
T PRK08138        210 ---QIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY  258 (261)
T ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence               4577788777788999999999999999999999999999999998875

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-50  Score=399.03  Aligned_cols=256  Identities=23%  Similarity=0.317  Sum_probs=223.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|+.+.+++++++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence            778889999844689999999996 7999999999999999999999999999999999999999999987532111110


Q ss_pred             c--ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        80 ~--~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      .  ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus        81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~  158 (262)
T PRK07468         81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA  158 (262)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence            0  1112233455 67899999999999999999999999999999999999999999999999999998855 559999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      ++++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                            
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~----------------------------  210 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA----------------------------  210 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886544                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|++++......+++.++.|...+..++.|+|+++++++|++||++++
T Consensus       211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                    4466777665566788899999999999999999999999999999875

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.2e-49  Score=398.13  Aligned_cols=253  Identities=24%  Similarity=0.347  Sum_probs=223.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+ +.+.+++ +++|++|+||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......  
T Consensus         1 ~~-~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~--   76 (261)
T PRK03580          1 MS-ESLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD--   76 (261)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence            66 4688888 78999999999988999999999999999999999999999999998 6999999999875422111  


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+.......+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111122344 66889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++                              
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------  205 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986544                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHH----HHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEA----KVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~----~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....+++++++.|.    ..+..++.++|+++++++|++||++++
T Consensus       206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                  4467777777778888888886    478899999999999999999998775

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-49  Score=398.62  Aligned_cols=253  Identities=25%  Similarity=0.349  Sum_probs=223.7

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.+++ +++|++|+||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD   82 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence            46788888 7899999999996 699999999999999999999999999999999999999999998864321111110


Q ss_pred             --c-chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        82 --~-~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        + .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  160 (263)
T PRK07799         83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV  160 (263)
T ss_pred             hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence              0 0111 123 2367999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++                             
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~-----------------------------  211 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ-----------------------------  211 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus       212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  260 (263)
T PRK07799        212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF  260 (263)
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   4567787777788999999999999999999999999999999998775

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=2.1e-49  Score=396.43  Aligned_cols=254  Identities=28%  Similarity=0.466  Sum_probs=225.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      .+.+.++..+++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....    
T Consensus         8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----   83 (265)
T PLN02888          8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD----   83 (265)
T ss_pred             CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence            3567777546889999999996 79999999999999999999999999999999999999999999875321111    


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      ......+.+ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (265)
T PLN02888         84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE  162 (265)
T ss_pred             hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence            111123455 5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++.+++.++|+++++.+|.+++                                
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL--------------------------------  210 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999986544                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHhHHHHHHHhhhccCCCC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN  297 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~af~~~r~~~~~~~  297 (589)
                          .+|++++.....+++++++.|.+.+..++  .++|+++++++|++||+++|.|+
T Consensus       211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~  264 (265)
T PLN02888        211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK  264 (265)
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence                45677887777889999999999888886  59999999999999999998663

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-49  Score=401.07  Aligned_cols=256  Identities=27%  Similarity=0.372  Sum_probs=227.0

Q ss_pred             CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~-~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+|+.+.+++ ++ +|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence            8899999999 77 99999999996 799999999999999999999999999999999999999999998754221110


Q ss_pred             c-----cccch----hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhh
Q 007805           79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR  149 (589)
Q Consensus        79 ~-----~~~~~----~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~  149 (589)
                      .     ..+..    ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            0     00100    112344 5688999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHHHHHHHH
Q 007805          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK  228 (589)
Q Consensus       150 l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~  228 (589)
                      |++++|..++++|++||++++|+||+++||||+|||++++.+++.++|+++++. +|.++.                   
T Consensus       160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~-------------------  220 (272)
T PRK06210        160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA-------------------  220 (272)
T ss_pred             hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence            999999999999999999999999999999999999999999999999999985 765443                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                       .+|+.++.....++.++++.|...+..++.++++++++++|++||+|.+
T Consensus       221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  269 (272)
T PRK06210        221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF  269 (272)
T ss_pred             -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                             4567787777778999999999999999999999999999999998775

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.2e-49  Score=397.14  Aligned_cols=250  Identities=26%  Similarity=0.386  Sum_probs=221.5

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cc-ccc
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DV-SLM   82 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~-~~~   82 (589)
                      +.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|+|++++....... .. ..+
T Consensus         1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            35777 7899999999995 79999999999999999999998 99999999999999999999875421110 00 011


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus        79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l  157 (256)
T TIGR02280        79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL  157 (256)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11122344 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      +++|++++|+||+++||||+|||++++.+++.++|+++++.||.+++                                 
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~---------------------------------  204 (256)
T TIGR02280       158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA---------------------------------  204 (256)
T ss_pred             HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999876543                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                         .+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus       205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence               4577888777788999999999999999999999999999999998875

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-49  Score=395.28  Aligned_cols=250  Identities=28%  Similarity=0.410  Sum_probs=221.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+ +.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   76 (254)
T PRK08252          1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS--   76 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence            65 5788998 7899999999996 69999999999999999999999999999999999999999999876421110  


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                       ........++   ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  152 (254)
T PRK08252         77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA  152 (254)
T ss_pred             -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence             1111111222   247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|+||+++||||+|||++++++++.++++++++.||.+++                              
T Consensus       153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  202 (254)
T PRK08252        153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------  202 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....++.+.++.|...+..++.++|+++++.+|++||++++
T Consensus       203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4567777777778999999999999999999999999999999988775

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.6e-49  Score=399.35  Aligned_cols=251  Identities=23%  Similarity=0.322  Sum_probs=220.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-c--c
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V   79 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~--~   79 (589)
                      +++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++....... .  .
T Consensus         8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   86 (275)
T PRK09120          8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ   86 (275)
T ss_pred             ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence            5688998 7899999999996 79999999999999999999999999999999999999999999874321111 0  1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  165 (275)
T PRK09120         87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA  165 (275)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence            11111223445 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++                              
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------  215 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------  215 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHhHHHHHHHhhhc
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRAT  292 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~af~~~r~~  292 (589)
                            .+|+.++.....++.+.++.|..  .+..++.++ |+++++++|++||..
T Consensus       216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~  265 (275)
T PRK09120        216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSY  265 (275)
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccC
Confidence                  45677887777888888888764  456678998 899999999999883

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-49  Score=395.68  Aligned_cols=245  Identities=30%  Similarity=0.475  Sum_probs=219.8

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 007805           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (589)
Q Consensus        12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (589)
                      +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence            5789999999996 699999999999999999999999999999998 589999999998754211 1111222223345


Q ss_pred             HHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (589)
Q Consensus        90 ~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  169 (589)
                      + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus        81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  159 (251)
T PLN02600         81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI  159 (251)
T ss_pred             H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence            5 668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007805          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD  249 (589)
Q Consensus       170 ~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  249 (589)
                      +|+||+++||||+|||++++++++.++|++|++.||.+++                                    .+|+
T Consensus       160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~  203 (251)
T PLN02600        160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK  203 (251)
T ss_pred             CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence            9999999999999999999999999999999999986543                                    4577


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                      +++.....++.++++.|...+..++.++|+++++++|++||+|++
T Consensus       204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  248 (251)
T PLN02600        204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY  248 (251)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            888777788999999999999999999999999999999998774

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-49  Score=396.93  Aligned_cols=255  Identities=24%  Similarity=0.310  Sum_probs=227.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--CC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AG   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~   77 (589)
                      || .++.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.....  ..
T Consensus         1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~   78 (260)
T PRK07511          1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS   78 (260)
T ss_pred             CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence            77 4578888 8899999999996 799999999999999999999999999999999999999999998754211  11


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  157 (260)
T PRK07511         79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ  157 (260)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence            1111222334555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      ++++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++                            
T Consensus       158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~----------------------------  209 (260)
T PRK07511        158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA----------------------------  209 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|+.++.....++.++++.|.+.+..++.++|+++++++|+++|++++
T Consensus       210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence                    4567787777788999999999999999999999999999999998775

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-49  Score=400.01  Aligned_cols=252  Identities=30%  Similarity=0.429  Sum_probs=224.7

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-C--ccc
Q 007805            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS   80 (589)
Q Consensus         5 ~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--~~~   80 (589)
                      ++.+++ +++|++|+||||+ .|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... .  ...
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~   96 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL   96 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence            688888 7899999999995 7999999999999999999999999999999999999999999987432111 1  011


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCC-ChhhhhhHhhhcCHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~~~~G~~~a  159 (589)
                      .+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+|
T Consensus        97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a  175 (277)
T PRK08258         97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA  175 (277)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence            1222223455 678999999999999999999999999999999999999999999999995 78999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++                              
T Consensus       176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  225 (277)
T PRK08258        176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------  225 (277)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986544                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4567888777788999999999999999999999999999999999885

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-49  Score=398.14  Aligned_cols=255  Identities=25%  Similarity=0.403  Sum_probs=226.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-Ccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-GDV   79 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~-~~~   79 (589)
                      .+.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...... ...
T Consensus        10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127         10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            36788888 7899999999996 7999999999999999999999999999999998 799999999987542111 111


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  167 (269)
T PRK06127         89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA  167 (269)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            11222233445 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++++++.++|+++++.||.+++                              
T Consensus       168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  217 (269)
T PRK06127        168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------  217 (269)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++.
T Consensus       218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~  267 (269)
T PRK06127        218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK  267 (269)
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence                  45677777777789999999999999999999999999999999988753

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=2.7e-49  Score=394.84  Aligned_cols=253  Identities=25%  Similarity=0.357  Sum_probs=215.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      +.+.+++++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            457777635789999999996 6999999999999999999999999999999999 79999999997643211110000


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      .......++ +.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus        82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            001122445 6789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |+++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  208 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR--------------------------------  208 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999987654                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                          .+|++++..... ....+..|...+..++.|+|+++++++|++||+|++
T Consensus       209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~  256 (259)
T TIGR01929       209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF  256 (259)
T ss_pred             ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                335555554332 344556677899999999999999999999999875

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=2e-49  Score=399.30  Aligned_cols=246  Identities=24%  Similarity=0.405  Sum_probs=218.4

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC----C--c----cc
Q 007805           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA----G--D----VS   80 (589)
Q Consensus        12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~----~--~----~~   80 (589)
                      +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......    .  .    ..
T Consensus        15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   94 (275)
T PLN02664         15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR   94 (275)
T ss_pred             CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence            6889999999996 6999999999999999999999999999999999999999999987542110    0  0    00


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|++++|++++|..+|+
T Consensus        95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~  173 (275)
T PLN02664         95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM  173 (275)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence            1111223445 668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++||++++|+||+++||||+|||+ +++.+++.+++++|++.||.+++                              
T Consensus       174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------  223 (275)
T PLN02664        174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------  223 (275)
T ss_pred             HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999985 88999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....++.++++.|...+..++.++|++|++++|++||+|.+
T Consensus       224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  272 (275)
T PLN02664        224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF  272 (275)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                  4467777777778999999999999999999999999999999998875

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-49  Score=392.27  Aligned_cols=247  Identities=26%  Similarity=0.351  Sum_probs=216.4

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (589)
                      +.++..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus         3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG   82 (249)
T ss_pred             eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            45554478999999999988999999999999999999999999999999999999999999987532111111111122


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (589)
Q Consensus        86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt  165 (589)
                      ...++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|..++++|+++
T Consensus        83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt  158 (249)
T PRK07938         83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT  158 (249)
T ss_pred             HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence            33455 67899999999999999999999999999999999999999999999986   456789999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (589)
                      |++++|+||+++||||+|||++++++++.+++++|++.||.+++                                    
T Consensus       159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------  202 (249)
T PRK07938        159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------  202 (249)
T ss_pred             CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999999886554                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhc
Q 007805          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (589)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~  292 (589)
                      .+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus       203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            45677777777788999999999999999999999999999999875

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.1e-49  Score=393.02  Aligned_cols=251  Identities=31%  Similarity=0.446  Sum_probs=226.1

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......  ..+
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~   81 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE   81 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence            4688888 789999999999 579999999999999999999999999999999999999999999876532211  122


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      .....+++ +.+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|+++
T Consensus        82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l  160 (259)
T PRK06688         82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM  160 (259)
T ss_pred             HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence            33344566 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      +++|++++|+||+++||||+++|++++.+++.++|+++++.||.+++                                 
T Consensus       161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~---------------------------------  207 (259)
T PRK06688        161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR---------------------------------  207 (259)
T ss_pred             HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875443                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                         .+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++
T Consensus       208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~  256 (259)
T PRK06688        208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF  256 (259)
T ss_pred             ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               3467777777788999999999999999999999999999999988774

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=7.2e-49  Score=391.14  Aligned_cols=251  Identities=27%  Similarity=0.319  Sum_probs=213.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~   77 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG   77 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence            56788998 7899999999996 7999999999999999999999999999999998 69999999998743111 1 11


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            1112233455 678999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++                               
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~-------------------------------  205 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA-------------------------------  205 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999986554                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                           .+|++++......... ...|...+..++.|+|+++++.+|++||+|++
T Consensus       206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~  253 (256)
T TIGR03210       206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF  253 (256)
T ss_pred             -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence                 3355555443322111 12356788889999999999999999998875

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-49  Score=393.71  Aligned_cols=251  Identities=23%  Similarity=0.285  Sum_probs=223.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T PRK07659          6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV   83 (260)
T ss_pred             ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence            4588888 7899999999996 6999999999999999999 58899999999999999999999987542211111222


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      .....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l  162 (260)
T PRK07659         84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI  162 (260)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence            22334555 66889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      +++|++++|+||+++||||++| ++++.+++.++++++++.||.+++                                 
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~---------------------------------  208 (260)
T PRK07659        163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI---------------------------------  208 (260)
T ss_pred             HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            9999999999999999999999 788999999999999999876543                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                         .+|++++.....++++.++.|.+.+..++.++|+++++.+|++||+|++
T Consensus       209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  257 (260)
T PRK07659        209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF  257 (260)
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence               4567777777788999999999999999999999999999999998875

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=5.8e-49  Score=392.66  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=221.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |||+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+ +|+|||||.  |++||+|.|++++...... 
T Consensus         1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-   77 (261)
T PRK11423          1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-   77 (261)
T ss_pred             CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence            9999999999 8999999999996 79999999999999999999887 999999986  3799999999987532111 


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus        78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~  155 (261)
T PRK11423         78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH  155 (261)
T ss_pred             -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence             111222334555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      ++++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++                            
T Consensus       156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------  207 (261)
T PRK11423        156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986544                            


Q ss_pred             CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|++++.... ... ...++.|.+.+..++.|+|+++++.+|++||++++
T Consensus       208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~  258 (261)
T PRK11423        208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF  258 (261)
T ss_pred             --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence                    34566664432 233 67888899999999999999999999999998875

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.9e-49  Score=390.75  Aligned_cols=251  Identities=23%  Similarity=0.327  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07260          1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS   79 (255)
T ss_pred             CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence            46788998 7899999999996 699999999999999999999999999999999999999999998764221111111


Q ss_pred             ---cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                         +.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  158 (255)
T PRK07260         80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR  158 (255)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence               122234455 6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      +++|+++|++++|+||+++||||++||++++.+++.++++++++.+|.+++                             
T Consensus       159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (255)
T PRK07260        159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA-----------------------------  209 (255)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886554                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                             .+|+.++.....++++.+..|...+..++.|+|+++++++|++||+
T Consensus       210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence                   4567777777788999999999999999999999999999999885

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=7.7e-49  Score=394.42  Aligned_cols=257  Identities=19%  Similarity=0.254  Sum_probs=225.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCCcCCCCchhhhhccCCCc-c
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-V   79 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~   79 (589)
                      .+.+.+++++++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|  ++||+|.|++++........ .
T Consensus        10 ~~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~   89 (278)
T PLN03214         10 TPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARY   89 (278)
T ss_pred             CCceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHH
Confidence            35788887458899999999988999999999999999999999999999999997  68999999998753211110 1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCC-CCChhhhhhHhhhcCHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl-~p~~g~~~~l~~~~G~~~  158 (589)
                      ..+......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|..+
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~  168 (278)
T PLN03214         90 AEFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKV  168 (278)
T ss_pred             HHHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHH
Confidence            11111122345 6689999999999999999999999999999999999999999999999 599999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      +++|++||++++|+||+++||||+|||.+++++++.+++++|++.||.+++                             
T Consensus       169 a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------------  219 (278)
T PLN03214        169 AESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA-----------------------------  219 (278)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                             .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.||-+
T Consensus       220 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        220 -------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             -------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence                   456777777777889999999999999999999999999999999988754

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.6e-48  Score=392.02  Aligned_cols=253  Identities=26%  Similarity=0.364  Sum_probs=217.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      ++.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~   89 (273)
T PRK07396         12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD   89 (273)
T ss_pred             CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence            56788888 8899999999996 6999999999999999999999999999999999 5999999999874321111 01


Q ss_pred             ccch-hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~-~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            1111 122344 66889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++                              
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------  218 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|++.
T Consensus       219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~  267 (273)
T PRK07396        219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS  267 (273)
T ss_pred             ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence                  33555555433 34555567888899999999999999999999998753

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=397.27  Aligned_cols=258  Identities=24%  Similarity=0.345  Sum_probs=220.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C--
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A--   76 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~--   76 (589)
                      |+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .  
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence            7888899999 8899999999996 699999999999999999999999999999999999999999998753100 0  


Q ss_pred             ---------Cccc----ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCC
Q 007805           77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG  143 (589)
Q Consensus        77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~  143 (589)
                               ....    .+......++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  158 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE  158 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence                     0000    1111122445 6789999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHH
Q 007805          144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE  222 (589)
Q Consensus       144 ~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~  222 (589)
                      +|++++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++|++. +|.+++             
T Consensus       159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~-------------  225 (296)
T PRK08260        159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA-------------  225 (296)
T ss_pred             cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence            999999999999999999999999999999999999999999999999999999999985 665443             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                             .+|++++...... .......|...+..++.++|+++++.+|++||+|.+.+
T Consensus       226 -----------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~  277 (296)
T PRK08260        226 -----------------------LTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG  277 (296)
T ss_pred             -----------------------HHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence                                   3456666553221 22334568888999999999999999999999988654

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-48  Score=387.20  Aligned_cols=248  Identities=28%  Similarity=0.338  Sum_probs=217.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+ +++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++..... ...
T Consensus         1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~   77 (254)
T PRK08259          1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL   77 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence            66 5688998 7899999999996 699999999999999999999999999999999999999999998754211 111


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..  ......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            10  0001112 22347999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|+||+++||||+|||++++++++.++|++|++.||.+++                              
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------  204 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                            .+|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus       205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence                  446777777777899999999998888887 999999999998876

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-48  Score=390.13  Aligned_cols=250  Identities=26%  Similarity=0.409  Sum_probs=216.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      ++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   85 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV   85 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence            35788898 7899999999996 6999999999999999999999999999999998 6999999999875432111111


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc-cCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~-~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            1222234455 6688999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------  214 (262)
T PRK06144        165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------  214 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|+.++.....    .++.+.+.+..++.++|+++++.+|++||++++
T Consensus       215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  335566554333    334466788899999999999999999998775

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-48  Score=386.20  Aligned_cols=247  Identities=24%  Similarity=0.403  Sum_probs=217.8

Q ss_pred             CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 007805            1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (589)
Q Consensus         1 M~~~~~~~~~~~~---~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~   76 (589)
                      |+ +.+.+++ ++   +|++|+||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|.|++++......
T Consensus         1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~   78 (251)
T PRK06023          1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG   78 (251)
T ss_pred             CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence            66 4688888 55   59999999996 7999999999999999999999999999999999999999999987542111


Q ss_pred             CcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                      .  ..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  155 (251)
T PRK06023         79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH  155 (251)
T ss_pred             c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence            1  11222333555 67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .++++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++                           
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------  208 (251)
T PRK06023        156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ---------------------------  208 (251)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999986544                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~  289 (589)
                               .+|++++... .++.++++.|.+.+..++.++|+++++++|++|
T Consensus       209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence                     3456666543 468888899999999999999999999999975

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-48  Score=390.52  Aligned_cols=251  Identities=25%  Similarity=0.291  Sum_probs=212.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (589)
                      |+.+.++..+++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus        10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   89 (268)
T PRK07327         10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA   89 (268)
T ss_pred             CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence            5778888744789999999997 699999999999999999999999999999999999999999998754211110 11


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      ........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++||+++|..+|+
T Consensus        90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (268)
T PRK07327         90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK  168 (268)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence            1112223455 668899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      ++++||++++|+||+++||||+|||++++++++.++|++|++.||.+++                               
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  217 (268)
T PRK07327        169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR-------------------------------  217 (268)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999986554                               


Q ss_pred             ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                           .+|++++...   ...++..+..|    ..++.++|+++++.+|++||+|++
T Consensus       218 -----~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~  265 (268)
T PRK07327        218 -----WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF  265 (268)
T ss_pred             -----HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence                 2344554321   11344444444    347889999999999999998875

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-48  Score=384.22  Aligned_cols=252  Identities=28%  Similarity=0.403  Sum_probs=225.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... .
T Consensus         1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~   78 (258)
T PRK06190          1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G   78 (258)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence            8999999999 8999999999996 79999999999999999999999999999999999999999999875421111 1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                       . .....+++ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  155 (258)
T PRK06190         79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA  155 (258)
T ss_pred             -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence             1 12234555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||++||++++++++.+++++|++.||.+++                              
T Consensus       156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (258)
T PRK06190        156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------  205 (258)
T ss_pred             HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987654                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHhHHHHHHHhhhcc
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRATS  293 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~af~~~r~~~  293 (589)
                            .+|++++.....+++++++.|...+..++.|   +..++...+|.++-+++
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  256 (258)
T PRK06190        206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRAQ  256 (258)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhhc
Confidence                  4577888877888999999999999999999   77777778888775543

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-48  Score=390.83  Aligned_cols=254  Identities=25%  Similarity=0.343  Sum_probs=215.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---cc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV   79 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~   79 (589)
                      +.+.++..+++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   ..
T Consensus         9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   88 (276)
T PRK05864          9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP   88 (276)
T ss_pred             CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence            457777546789999999996 69999999999999999999999999999999999999999999874321100   00


Q ss_pred             c---ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCC-ChhhhhhHhhhcC
Q 007805           80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG  155 (589)
Q Consensus        80 ~---~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~~~~G  155 (589)
                      .   .......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|
T Consensus        89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG  167 (276)
T PRK05864         89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG  167 (276)
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence            0   1111223445 668899999999999999999999999999999999999999999999997 7899999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++                          
T Consensus       168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  221 (276)
T PRK05864        168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE--------------------------  221 (276)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999986543                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHhHHHHHHHhhhccC
Q 007805          236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                .+|++++..... ++++++..|...+. ..+.|+|+++++.+|++||+|++
T Consensus       222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~  272 (276)
T PRK05864        222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF  272 (276)
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                      345666665554 67888877765332 35789999999999999998875

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-48  Score=386.76  Aligned_cols=247  Identities=27%  Similarity=0.311  Sum_probs=219.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+ +.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~   77 (249)
T PRK05870          1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A   77 (249)
T ss_pred             CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence            54 4688888 8899999999996 79999999999999999999999999999999999999999999886432211 1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            11122233445 56889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +++++||++++|+||+++||||++|  +++.+++.++|+++++.||.+++                              
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------  204 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            9999999999999999999999999  68999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805          240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~  289 (589)
                            .+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus       205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence                  45677877776 789999999999999999999999999999975

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=5.2e-48  Score=383.30  Aligned_cols=244  Identities=26%  Similarity=0.366  Sum_probs=211.1

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (589)
                      +.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++...   . ...+...
T Consensus         3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~---~-~~~~~~~   77 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD---Q-CAAMLAS   77 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch---h-HHHHHHH
Confidence            67788 78999999999988999999999999999999999999999999999999999999975321   1 1111222


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (589)
Q Consensus        86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt  165 (589)
                      ..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|++|
T Consensus        78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt  155 (251)
T TIGR03189        78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS  155 (251)
T ss_pred             HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence            33455 6789999999999999999999999999999999999999999999999997 467899999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCchHHHHHHHHH-HHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      |++++|+||+++||||+|+|+.+  +++.++ ++++++.||.+++                                   
T Consensus       156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~-----------------------------------  198 (251)
T TIGR03189       156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR-----------------------------------  198 (251)
T ss_pred             CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            99999999999999999998654  456665 6899999886543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~-~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|++++.....++++++. .|...+..++.|+|+++++++|++||++++
T Consensus       199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence             3466777776777777764 788889999999999999999999999875

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-48  Score=390.17  Aligned_cols=253  Identities=22%  Similarity=0.213  Sum_probs=215.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchh-hhh---c-c
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---V-H   74 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~-~~~---~-~   74 (589)
                      |+++.+.++. +++|++|+||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +..   . .
T Consensus         2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence            7788899998 8899999999996 699999999999999999999999999999999999999999986 211   0 0


Q ss_pred             CCC---ccccc---c-h--hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccccc-CCCCCh
Q 007805           75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF  144 (589)
Q Consensus        75 ~~~---~~~~~---~-~--~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~-Gl~p~~  144 (589)
                      ...   ....+   . .  ..+..+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--  157 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--  157 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence            000   00111   0 0  011234 45889999999999999999999999999999999999999999997 9875  


Q ss_pred             hhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHH
Q 007805          145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  224 (589)
Q Consensus       145 g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~  224 (589)
                      ++++  .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.||.+++               
T Consensus       158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------  220 (298)
T PRK12478        158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ---------------  220 (298)
T ss_pred             hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence            3333  35699999999999999999999999999999999999999999999999999887554               


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------hHHHHHHHhhhccCC
Q 007805          225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV  295 (589)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~af~~~r~~~~~  295 (589)
                                           .+|++++.... .+++++++.|...+..++.|+|++        |++.+|++||+|++.
T Consensus       221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~  279 (298)
T PRK12478        221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG  279 (298)
T ss_pred             ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                                 45677777666 468999999999999999999997        599999999998864

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1e-47  Score=392.30  Aligned_cols=254  Identities=27%  Similarity=0.309  Sum_probs=216.1

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 007805            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+.+.++++ +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus        64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~  142 (327)
T PLN02921         64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P  142 (327)
T ss_pred             CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence            456888874 4889999999996 6999999999999999999999999999999999 7999999999874321110 0


Q ss_pred             cccch-hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 ~~~~~-~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ..... ...+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus       143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~  221 (327)
T PLN02921        143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK  221 (327)
T ss_pred             hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            01111 112344 6788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++                             
T Consensus       222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~-----------------------------  272 (327)
T PLN02921        222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR-----------------------------  272 (327)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999987654                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                             .+|++++..... .....+.|...+..++.++|++|++.+|++||+|++.
T Consensus       273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~  321 (327)
T PLN02921        273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS  321 (327)
T ss_pred             -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence                   345566654432 3333344568889999999999999999999998853

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=384.95  Aligned_cols=251  Identities=27%  Similarity=0.427  Sum_probs=220.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus         2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~   79 (262)
T PRK07509          2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL   79 (262)
T ss_pred             CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence            46799999 8999999999995 79999999999999999999999999999999999999999999876422111 111


Q ss_pred             cc-------hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhc
Q 007805           82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (589)
Q Consensus        82 ~~-------~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~  154 (589)
                      ..       ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  158 (262)
T PRK07509         80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV  158 (262)
T ss_pred             HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence            11       1122333 567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (589)
Q Consensus       155 G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (589)
                      |..+++++++||++++|+||+++||||++|++  +.+++.++++++++.||.+++                         
T Consensus       159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~-------------------------  211 (262)
T PRK07509        159 RKDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIA-------------------------  211 (262)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            99999999999999999999999999999954  678999999999999876543                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                 .+|+.++.....++.+++..|.+.+..++.++|+++++.+|++||+|++
T Consensus       212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  260 (262)
T PRK07509        212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF  260 (262)
T ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                       4467777777778899999999999999999999999999999998764

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.4e-47  Score=382.74  Aligned_cols=252  Identities=37%  Similarity=0.577  Sum_probs=218.9

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      .++.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence            456788888 6779999999996 69999999999999999999999999999999999999999999987511111111


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            2222333456 679999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +|++||+.++++||+++||||++|++ +++++.+.++++++++ +|.+++                              
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------  209 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------  209 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence            99999999999999999999999985 7999999999999998 544332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~  293 (589)
                            .+|+.++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus       210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~  256 (257)
T COG1024         210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV  256 (257)
T ss_pred             ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence                  4456677776666888999999999999999999999999999 6654

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-47  Score=377.43  Aligned_cols=243  Identities=19%  Similarity=0.252  Sum_probs=215.5

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      +.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++....    ...+..
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~   76 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE   76 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence            56787 7899999999996 79999999999999999999999999999999999999999999875321    111222


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. +++++++
T Consensus        77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll  154 (248)
T PRK06072         77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV  154 (248)
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence            233455 66899999999999999999999999999999999999999999999999999999999999996 8999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|+||+++||||++   +++++++.++|+++++.||.+++                                   
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~-----------------------------------  196 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI-----------------------------------  196 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            9999999999999999963   35788999999999999876543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus       197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  245 (248)
T PRK06072        197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF  245 (248)
T ss_pred             -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence             4467777776778899999999999999999999999999999998875

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8e-47  Score=376.22  Aligned_cols=250  Identities=18%  Similarity=0.211  Sum_probs=214.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|+++.+++ +++|++|+||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~   77 (255)
T PRK07112          1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA   77 (255)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence            7889999999 8899999999996 69999999999999999998  469999999999999999999987542211111


Q ss_pred             c-ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      . .......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus        78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~  155 (255)
T PRK07112         78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK  155 (255)
T ss_pred             hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence            1 1112223455 678999999999999999999999999999999999999999999999999865 567999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      +++++++|++++|+||+++||||+|||+++.  .+.++++++++.+|.+++                             
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~-----------------------------  204 (255)
T PRK07112        156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA-----------------------------  204 (255)
T ss_pred             HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence            9999999999999999999999999987653  578899999999886544                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|.+
T Consensus       205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence                   335555543 345788999999999999999999999999999998775

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-46  Score=373.93  Aligned_cols=245  Identities=21%  Similarity=0.284  Sum_probs=221.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |.|+.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++.......  
T Consensus         2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   78 (249)
T PRK07110          2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--   78 (249)
T ss_pred             CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence            6678888998 8899999999996 69999999999999999999999999999999999999999999875432211  


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+. . ..++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence            1111 1 3455 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +++++||++++++||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------  205 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886544                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~  287 (589)
                            .+|+.++.....+++++++.|...+..++.++|++|++....
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence                  457788888888999999999999999999999999998653

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.4e-47  Score=373.96  Aligned_cols=238  Identities=25%  Similarity=0.375  Sum_probs=209.6

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      +.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++...      ...+..
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~   73 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD   73 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence            56788 7899999999996 6999999999999999999865 8999999999999999999985211      111222


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ...+++ +.+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l  152 (243)
T PRK07854         74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL  152 (243)
T ss_pred             HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence            234555 6789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|+||+++||||+|++.    +++.+++++|++.||.+++                                   
T Consensus       153 tg~~~~a~eA~~~Glv~~v~~~----~~a~~~a~~l~~~~~~a~~-----------------------------------  193 (243)
T PRK07854        153 GAEKLTAEQALATGMANRIGTL----ADAQAWAAEIAGLAPLALQ-----------------------------------  193 (243)
T ss_pred             cCCCcCHHHHHHCCCcccccCH----HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            9999999999999999999762    2789999999999886543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|++++..  .+++++++.|...+..++.++|+++++.+|++||++.+
T Consensus       194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence             345666654  56889999999999999999999999999999998775

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2e-47  Score=379.75  Aligned_cols=244  Identities=35%  Similarity=0.557  Sum_probs=222.3

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (589)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (589)
                      .+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus         1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~   78 (245)
T PF00378_consen    1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR   78 (245)
T ss_dssp             EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred             CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence            3677 899999999999 68999999999999999999999999999999999999999999998775 11223334455


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (589)
Q Consensus        86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt  165 (589)
                      ...++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus        79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            55667 77999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (589)
                      |++++|+||+++||||+|+|++++.+++.+++++++..|+.+++                                    
T Consensus       158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------  201 (245)
T PF00378_consen  158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------  201 (245)
T ss_dssp             TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred             cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999999886554                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (589)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~  289 (589)
                      .+|+.++......+++.++.|.+.+..++.++|+++++++|+||
T Consensus       202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            45677787777888999999999999999999999999999987

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.1e-47  Score=377.39  Aligned_cols=250  Identities=25%  Similarity=0.345  Sum_probs=218.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc-CCCc-cc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS   80 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~   80 (589)
                      +.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus         6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (260)
T PRK07827          6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV   84 (260)
T ss_pred             cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence            4577888 7899999999996 79999999999999999999999999999999999999999999875421 1110 11


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++ ..+++
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~  162 (260)
T PRK07827         85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA  162 (260)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence            1122234455 678999999999999999999999999999999999999999999999999999999999875 56999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +++++|++++|+||+++||||++++  ++.+++.++++++++.|+.+++                               
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~-------------------------------  209 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA-------------------------------  209 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999974  5899999999999999876543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                           .+|+.++......+++.++.|...+..++.++++++++++|++||+|++
T Consensus       210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~  258 (260)
T PRK07827        210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW  258 (260)
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                 4567788877788899999999999999999999999999999988764

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=6.4e-47  Score=390.49  Aligned_cols=290  Identities=23%  Similarity=0.320  Sum_probs=220.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc-
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS-   80 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~-   80 (589)
                      +.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......... 
T Consensus         3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            4688888 8899999999996 6999999999999999999999999999999999 8999999999875421111000 


Q ss_pred             --ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        81 --~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        .+.....+++ ..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| .+
T Consensus        82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence              1112223445 6789999999999999999999999999999999999999999999999999999999999977 78


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHH------------HHHhcChh--------hhhhhhccCCCC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARRKP--------WIRSLHRTDKLG  218 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~~~--------~~~~~~~~~~~~  218 (589)
                      |++|++||++++|+||+++||||+|||++++.+...++++            .+.+.+..        ....+++.-...
T Consensus       160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  239 (342)
T PRK05617        160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD  239 (342)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999988776333221            11111000        000000000000


Q ss_pred             ChHHHHHHHH-----HHHHHHHH-hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH-Hh-h
Q 007805          219 SLSEAREVLK-----LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-AQ-R  290 (589)
Q Consensus       219 ~~~~~~~~~~-----~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~-~~-r  290 (589)
                      +.......+.     .+....++ ....-.+...+|++++.+...+++++++.|...+..++.++|+++++++|+ +| |
T Consensus       240 ~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r  319 (342)
T PRK05617        240 TVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR  319 (342)
T ss_pred             CHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCC
Confidence            1111111111     12222222 222334667889999988888999999999999999999999999999997 76 7


Q ss_pred             hccCCC
Q 007805          291 ATSKVP  296 (589)
Q Consensus       291 ~~~~~~  296 (589)
                      +|++.+
T Consensus       320 ~p~~~~  325 (342)
T PRK05617        320 NPKWSP  325 (342)
T ss_pred             CCCCCC
Confidence            777643

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=3.6e-46  Score=379.46  Aligned_cols=253  Identities=24%  Similarity=0.303  Sum_probs=213.5

Q ss_pred             CcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhhhcc
Q 007805            4 PRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH   74 (589)
Q Consensus         4 ~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~   74 (589)
                      .+++++++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|       ++||+|+|++++....
T Consensus        23 ~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~  102 (302)
T PRK08321         23 TDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG  102 (302)
T ss_pred             eeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc
Confidence            35777763 5789999999996 6999999999999999999999999999999998       5899999999763210


Q ss_pred             ----CCC--cc-c--ccchh-HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCCCC
Q 007805           75 ----GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG  143 (589)
Q Consensus        75 ----~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~p~  143 (589)
                          ...  .. .  ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        103 YQYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             ccccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence                000  00 0  00011 11233 56889999999999999999999999999999999 69999999999999999


Q ss_pred             hhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHH
Q 007805          144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA  223 (589)
Q Consensus       144 ~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~  223 (589)
                      ++++++|++++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.||.+++              
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------  247 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR--------------  247 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------
Confidence            999999999999999999999999999999999999999999999999999999999999987654              


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          224 REVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                            .+|++++..... ..+....|.+.+..++.++|+++++.+|++||++++
T Consensus       248 ----------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~  295 (302)
T PRK08321        248 ----------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW  295 (302)
T ss_pred             ----------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                                  345666554443 344455688999999999999999999999998875

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.8e-45  Score=377.30  Aligned_cols=273  Identities=32%  Similarity=0.504  Sum_probs=244.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .+++|+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+......+.+.     ....+++++.++++ +.+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999988877655443332222211     01223556677777 468


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      ++||+||+|||++.+.+++++.++.+.++++++|+|+||+++++++++.+.++.+|+++||++|+..++++++++++.|+
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHhc
Q 007805          466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAG  539 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~G  539 (589)
                      +++++.+.++++.+|+.++++ ++.|||++||++.++++||+.++++|. +++++|.++ .++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            999999999999999999999 589999999999999999999999975 999999999 899998   69999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      +|++.++++.+++.+++++.|++++++|+++|++|+   +|||+|+++
T Consensus       238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~  285 (311)
T PRK06130        238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE  285 (311)
T ss_pred             cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence            999999999999999887779999999999999999   999999864

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5e-46  Score=388.20  Aligned_cols=290  Identities=22%  Similarity=0.255  Sum_probs=217.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (589)
                      ++.+.+++ +++|++|+||||+ +|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   88 (379)
T PLN02874         10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL   88 (379)
T ss_pred             CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence            35688888 7899999999996 699999999999999999999999999999999999999999998754221111 01


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      ........++ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .++
T Consensus        89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~  166 (379)
T PLN02874         89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE  166 (379)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence            1111111233 56889999999999999999999999999999999999999999999999999999999999885 899


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc----------------------cCCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR----------------------TDKLG  218 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~----------------------~~~~~  218 (589)
                      +|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+..+.+                      .-..+
T Consensus       167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  245 (379)
T PLN02874        167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD  245 (379)
T ss_pred             HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988876322221 100000000100000                      00000


Q ss_pred             ChHHHHHHHH---------HHHHHHHHhC-CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHhHHHH
Q 007805          219 SLSEAREVLK---------LARLQAKKTA-PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV  285 (589)
Q Consensus       219 ~~~~~~~~~~---------~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a  285 (589)
                      +.....+.+.         .+....++-. ..-.+...+|++++.+...+++++++.|......++.   ++|++|++++
T Consensus       246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A  325 (379)
T PLN02874        246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA  325 (379)
T ss_pred             CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence            1111111111         1122222222 2233667889999998888999999999888888877   9999999999


Q ss_pred             HH-Hh-hhccCCC
Q 007805          286 FF-AQ-RATSKVP  296 (589)
Q Consensus       286 f~-~~-r~~~~~~  296 (589)
                      |+ +| |+|++.+
T Consensus       326 flidK~r~P~w~~  338 (379)
T PLN02874        326 LVIDKDNAPKWNP  338 (379)
T ss_pred             EEEcCCCCCCCCC
Confidence            97 78 8888754

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3e-45  Score=393.89  Aligned_cols=254  Identities=16%  Similarity=0.133  Sum_probs=221.2

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-CcCCC
Q 007805            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF   65 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~-~-------------N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g~~-F~aG~   65 (589)
                      |.+|.+..+ +++|++||||||+ .             |+|+.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~  334 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA  334 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence            345555543 6789999999995 7             9999999999999999998 4599999999999987 99999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe-CCcccchh-hHHhhhcCEEEE-------eCCceEecccc
Q 007805           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL  136 (589)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav-~G~a~GgG-~~lala~D~~ia-------~~~a~~~~pe~  136 (589)
                      |++.+... ............++++ .+|.++|||+||+| ||+|+||| ++|+++||+||+       +++++|++||+
T Consensus       335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~  412 (546)
T TIGR03222       335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL  412 (546)
T ss_pred             Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence            99843211 1100111112233455 67999999999999 89999999 999999999999       89999999999


Q ss_pred             ccCCCCChhhhhhHhhhc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc
Q 007805          137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (589)
Q Consensus       137 ~~Gl~p~~g~~~~l~~~~-G~~~a--~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (589)
                      ++|++|++|++++|++++ |.+++  +++++||++++|+||+++|||++|||++++++++.++|++|++.||.+++    
T Consensus       413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----  488 (546)
T TIGR03222       413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT----  488 (546)
T ss_pred             ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence            999999999999999998 99999  55999999999999999999999999999999999999999999987654    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHh---HHHHHHHh
Q 007805          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (589)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~af~~~  289 (589)
                                                      .+|++++.+...+++.+ +..|.+.|..++.|+|++|   ++++|++|
T Consensus       489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  536 (546)
T TIGR03222       489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG  536 (546)
T ss_pred             --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence                                            45678888888899999 9999999999999999999   99999999


Q ss_pred             hhccC
Q 007805          290 RATSK  294 (589)
Q Consensus       290 r~~~~  294 (589)
                      |+|+.
T Consensus       537 r~p~f  541 (546)
T TIGR03222       537 KKAQF  541 (546)
T ss_pred             CCCCC
Confidence            99874

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.3e-45  Score=396.36  Aligned_cols=254  Identities=15%  Similarity=0.157  Sum_probs=221.7

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CCcCCC
Q 007805            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF   65 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~-~-------------N~l~~~~~~~l~~~l~~~~~-~~~v~~vvl~g~g~-~F~aG~   65 (589)
                      |++|.++++ +++|++||||||+ .             |+||.+|+.+|.++++.++. |+++|+|||||.|+ +||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            556666664 5789999999995 5             79999999999999999986 79999999999994 999999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC-Ccccchh-hHHhhhcCEEEEe-------CCceEecccc
Q 007805           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL  136 (589)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~-G~a~GgG-~~lala~D~~ia~-------~~a~~~~pe~  136 (589)
                      |++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+|+||+|||+       ++++|++||+
T Consensus       339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~  416 (550)
T PRK08184        339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL  416 (550)
T ss_pred             Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence            9874321 11100011122233455 679999999999997 9999999 9999999999999       9999999999


Q ss_pred             ccCCCCChhhhhhHhhh-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc
Q 007805          137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (589)
Q Consensus       137 ~~Gl~p~~g~~~~l~~~-~G~~~a~~l--~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (589)
                      ++|++|++|++++|+|+ +|.++|+++  ++||++++|+||+++||||+|||++++++++.++|++|++.||.+++    
T Consensus       417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~----  492 (550)
T PRK08184        417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT----  492 (550)
T ss_pred             cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence            99999999999999998 699999997  58999999999999999999999999999999999999999987654    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHh---HHHHHHHh
Q 007805          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (589)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~af~~~  289 (589)
                                                      .+|++++.+...+++++ +..|.+.+..+++|+|++|   ++++|++|
T Consensus       493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  540 (550)
T PRK08184        493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG  540 (550)
T ss_pred             --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence                                            45788888888999999 9999999999999999999   99999999


Q ss_pred             hhccC
Q 007805          290 RATSK  294 (589)
Q Consensus       290 r~~~~  294 (589)
                      |+|+.
T Consensus       541 r~~~f  545 (550)
T PRK08184        541 QKAQF  545 (550)
T ss_pred             CCCCC
Confidence            99975

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.1e-44  Score=374.73  Aligned_cols=249  Identities=21%  Similarity=0.323  Sum_probs=209.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc--
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS--   80 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~--   80 (589)
                      +.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..........  
T Consensus        37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4578888 7899999999996 69999999999999999999999999999999999999999999886422111111  


Q ss_pred             -ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 -LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 -~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                       .+......++ ..|.++|||+||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a  193 (401)
T PLN02157        116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG  193 (401)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence             1111112233 56899999999999999999999999999999999999999999999999999999999999995 89


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||++||++++ +++.+++.+++..+|.+++                              
T Consensus       194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------  242 (401)
T PLN02157        194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------  242 (401)
T ss_pred             HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence            999999999999999999999999999998 6788999999887765433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHH---HHhhhcc
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATS  293 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af---~~~r~~~  293 (589)
                            .+|+.++.. ..+...++..|.+.+..++.+++.+|.+.+|   .+||++.
T Consensus       243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~  292 (401)
T PLN02157        243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDT  292 (401)
T ss_pred             ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchH
Confidence                  334455443 2345567778899999999999999999999   5555443

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-45  Score=334.53  Aligned_cols=246  Identities=29%  Similarity=0.464  Sum_probs=221.7

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 007805           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (589)
Q Consensus        12 ~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (589)
                      +.||.+|-+||| +.|+++.-|++.|.++++++..|+.+|+|+|.+. ++.||+|+||++...+++.. ...+......+
T Consensus        38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E-v~~fV~~lR~~  116 (291)
T KOG1679|consen   38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE-VTRFVNGLRGL  116 (291)
T ss_pred             CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH-HHHHHHHHHHH
Confidence            678999999999 5899999999999999999999999999999765 67899999999987764432 33444455556


Q ss_pred             HHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (589)
Q Consensus        90 ~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  169 (589)
                      + ..+.++|.|+||+|+|.++|||+||+|+||+|+|+++++|+++|.+++++|+.||||||||.+|...|+|+++|++.+
T Consensus       117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl  195 (291)
T KOG1679|consen  117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL  195 (291)
T ss_pred             H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence            6 679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHcCCcceecCch----HHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805          170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (589)
Q Consensus       170 ~a~~A~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (589)
                      ++.||..+||||+||...    .....+.++|++|..+.|.+++                                    
T Consensus       196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr------------------------------------  239 (291)
T KOG1679|consen  196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVR------------------------------------  239 (291)
T ss_pred             cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhh------------------------------------
Confidence            999999999999999655    6777788888888877775443                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                      .+|.+|+.+.+.++..++..|..++++...+.|-.|++.+|.+||+|...
T Consensus       240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~  289 (291)
T KOG1679|consen  240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK  289 (291)
T ss_pred             HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence            55789999999999999999999999999999999999999999998753

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-44  Score=361.83  Aligned_cols=239  Identities=26%  Similarity=0.325  Sum_probs=205.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---   76 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~---   76 (589)
                      |+++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......   
T Consensus         1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence            8999999999 8899999999996 6999999999999999999999999999999999999999999986421110   


Q ss_pred             --------------Cccc-ccc---hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccccc
Q 007805           77 --------------GDVS-LMP---DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (589)
Q Consensus        77 --------------~~~~-~~~---~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~  138 (589)
                                    .... .+.   .....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                          0000 010   1122344 56889999999999999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCC
Q 007805          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (589)
Q Consensus       139 Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (589)
                      |+ |+ .+++++++++|..++++|++||++++|+||+++||||++||++++++++.+++++|++.|+.+++         
T Consensus       159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------  227 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR---------  227 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence            98 54 45778999999999999999999999999999999999999999999999999999999986543         


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHHH
Q 007805          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDTS  279 (589)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~~  279 (589)
                                                 .+|++++..... ++++++..|.......+ +++|.
T Consensus       228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (288)
T PRK08290        228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAEV  263 (288)
T ss_pred             ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchhh
Confidence                                       446677776665 68999999999999988 77763

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.1e-44  Score=349.42  Aligned_cols=205  Identities=29%  Similarity=0.460  Sum_probs=183.1

Q ss_pred             CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         3 ~~~~~~~~~----~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+.+.++..    +++|++|+||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-   80 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE-   80 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh-
Confidence            466777763    478999999999889999999999999999999999999999999999999999999875432111 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ........++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~  159 (222)
T PRK05869         81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR  159 (222)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence            111122334566 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      +++++++|++++|+||+++||||+++|++++++++.+++++|++.||.+++
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~  210 (222)
T PRK05869        160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA  210 (222)
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=2.8e-42  Score=358.13  Aligned_cols=291  Identities=21%  Similarity=0.287  Sum_probs=227.0

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      +...|.++. +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus         7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~   85 (381)
T PLN02988          7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR   85 (381)
T ss_pred             cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence            345688888 7899999999997 69999999999999999999999999999999999999999999875321111100


Q ss_pred             ---ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        81 ---~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                         .+......+. ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. 
T Consensus        86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-  163 (381)
T PLN02988         86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-  163 (381)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence               1111111233 56889999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCC--C------------------
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDK--L------------------  217 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~--~------------------  217 (589)
                      .+++|++||++++|++|+++||+|++||++++.+.+.+++ +++..+|..++..++...  .                  
T Consensus       164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f  242 (381)
T PLN02988        164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF  242 (381)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence            6999999999999999999999999999999999999988 777666554443322110  0                  


Q ss_pred             --CChHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHhH
Q 007805          218 --GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL  282 (589)
Q Consensus       218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~  282 (589)
                        .++....+.++.         ++...+......| +...+.+.++++...++.+.++.|...-..++.   ++|+.||
T Consensus       243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG  322 (381)
T PLN02988        243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG  322 (381)
T ss_pred             CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence              011111111111         1111111222233 345677888999999999999999999999998   6999999


Q ss_pred             HHHHHH-h-hhccCCC
Q 007805          283 VHVFFA-Q-RATSKVP  296 (589)
Q Consensus       283 i~af~~-~-r~~~~~~  296 (589)
                      |+|-+= | +.|+|.|
T Consensus       323 VRA~LiDKd~~P~W~p  338 (381)
T PLN02988        323 CRAILVDKDKNPKWEP  338 (381)
T ss_pred             HHHHhcCCCCCCCCCC
Confidence            999875 3 4566654

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3e-42  Score=345.75  Aligned_cols=247  Identities=22%  Similarity=0.254  Sum_probs=197.3

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCCcCCCCchhhhhcc
Q 007805            3 APRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVH   74 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~   74 (589)
                      |.++.++.+ +++|++|+|| | +.|++|.+|+.+|.++++++++     |+++|+|||||. |++||+|+|++++....
T Consensus        14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~   92 (287)
T PRK08788         14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI   92 (287)
T ss_pred             cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence            344555543 6789999996 7 5799999999999999999998     899999999999 78999999999875321


Q ss_pred             CCCcccccchh---HHHHHHHHHH---hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805           75 GAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (589)
Q Consensus        75 ~~~~~~~~~~~---~~~~~~~~l~---~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~  148 (589)
                      .......+...   ....+ ..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~  171 (287)
T PRK08788         93 RAGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS  171 (287)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence            11111111111   11222 2233   79999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHH
Q 007805          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (589)
Q Consensus       149 ~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (589)
                      +|++++|..++++|++||++++|+||++|||||++||++++.+++.+++++|+.. |.+..                   
T Consensus       172 ~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~-------------------  231 (287)
T PRK08788        172 FLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR-------------------  231 (287)
T ss_pred             HHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-------------------
Confidence            9999999999999999999999999999999999999999999999999999976 33221                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHhHHHHHHH
Q 007805          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA  288 (589)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~i~af~~  288 (589)
                                       ++|+..+.....++++.++.|...+..++++. ...+-+.+|..
T Consensus       232 -----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        232 -----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             -----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence                             22333333344578888888887777655555 44556666653

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.9e-43  Score=342.33  Aligned_cols=202  Identities=27%  Similarity=0.373  Sum_probs=179.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+ +.+.++. +++|++|+||||+.|++|.+|+.+|.++++.++  +++|+||+||.|++||+|.|++++...  .....
T Consensus         1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~   74 (229)
T PRK06213          1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI   74 (229)
T ss_pred             Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence            64 5688888 789999999999889999999999999999998  567999999999999999999987542  11111


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .+.....+++ +++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+++++.++++++|...+
T Consensus        75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            2222334555 6789999999999999999999999999999999999 9999999999999888888899999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      ++++++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  203 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA  203 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999886543

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-42  Score=350.11  Aligned_cols=203  Identities=26%  Similarity=0.343  Sum_probs=176.4

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (589)
                      +|+++.++. +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.......   
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence            467899998 7899999999996 79999999999999999999999999999999999999999999875422100   


Q ss_pred             c----------------ccc-----cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccc
Q 007805           78 D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL  136 (589)
Q Consensus        78 ~----------------~~~-----~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~  136 (589)
                      .                ...     ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~  165 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT  165 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence            0                000     011223445 568899999999999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       137 ~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      ++|.+|..   ..+++++|..+|++|++||++++|+||+++||||++||++++.+++.++|++|++.||.+++
T Consensus       166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~  235 (302)
T PRK08272        166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA  235 (302)
T ss_pred             hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            98666643   35788999999999999999999999999999999999999999999999999999987665

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.1e-40  Score=339.82  Aligned_cols=262  Identities=26%  Similarity=0.352  Sum_probs=245.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      |++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....+++++.++++ ++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            578999999999999999999999999999999999999999999999999999999888778888888888888 5789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+||+|+|++.++|+.+++++.+.++++++++|+||+++++++++.+.++.++++.||++|++.++++|+++++.|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHh--
Q 007805          467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA--  538 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~--  538 (589)
                      ++++.++++++.+|++|+++ ++.+||++||++.++++||+.++++|. ++++||.++ .++|++   +|||++.|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 689999999999999999999999975 999999999 889998   8999999987  


Q ss_pred             -chHHHHHHHHHHHHhCCCCCC-chHHHHHHHH
Q 007805          539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK  569 (589)
Q Consensus       539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~  569 (589)
                       |++..+.....++..+++..+ |+|++.+|++
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA  274 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence             999999999999999887554 8888988887

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-42  Score=314.17  Aligned_cols=257  Identities=24%  Similarity=0.344  Sum_probs=223.7

Q ss_pred             CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc----C
Q 007805            3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH----G   75 (589)
Q Consensus         3 ~~~~~~~~--~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~----~   75 (589)
                      |+.+.+.+  .+..|.++.|||| +.|+++..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+....    .
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            55555553  2556999999999 579999999999999999999999999999999999999999987765421    1


Q ss_pred             CCc-------ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805           76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (589)
Q Consensus        76 ~~~-------~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~  148 (589)
                      ..+       .+......++.+ ..|.+||||||++|||+|+|+|..|..+||+|+++++|.|..-|+.+|+..+.|..+
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence            111       112233345556 679999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHH
Q 007805          149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV  226 (589)
Q Consensus       149 ~l~~~~G-~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~  226 (589)
                      |||..+| ...++++.+|++.++|.||++.|||.+|+|+ +++++.+..+|+.|+.++|.+.+                 
T Consensus       177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq-----------------  239 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ-----------------  239 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence            9999999 8999999999999999999999999999965 68999999999999999997654                 


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                         .+|..++.+.+++.+++|..-.-.....+.|+|..+.+.+-++|+++.++.
T Consensus       240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfs  290 (292)
T KOG1681|consen  240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFS  290 (292)
T ss_pred             -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence                               446788888899999999988888888889999999999999988777554

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=3.1e-40  Score=343.17  Aligned_cols=289  Identities=22%  Similarity=0.257  Sum_probs=221.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (589)
                      +.|.++. ++++++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........   .
T Consensus        42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~  120 (407)
T PLN02851         42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC  120 (407)
T ss_pred             CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4577888 7899999999996 699999999999999999999999999999999999999999998864321111   1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+......+. ..+.++|||+||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g  198 (407)
T PLN02851        121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG  198 (407)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence            11112222344 56789999999999999999999999999999999999999999999999999999999999997 59


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc-cC---------------------CC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR-TD---------------------KL  217 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~-~~---------------------~~  217 (589)
                      ++|++||+++++++|+++||+|++||.+++ +.+.+.+.++...++..+....+ ..                     ..
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~  277 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH  277 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence            999999999999999999999999999987 66677776665544333322110 00                     00


Q ss_pred             CChHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHhHHH
Q 007805          218 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH  284 (589)
Q Consensus       218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~  284 (589)
                      .++....+.++.         ++...+......| +...+.+.++++...++++.++.|...-..++   .++|+.|||+
T Consensus       278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR  357 (407)
T PLN02851        278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR  357 (407)
T ss_pred             CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            111211122211         1111122222233 44667788899999999999999999988887   4899999999


Q ss_pred             HHHH--hhhccCCC
Q 007805          285 VFFA--QRATSKVP  296 (589)
Q Consensus       285 af~~--~r~~~~~~  296 (589)
                      |-+=  .++|+|.|
T Consensus       358 A~LIDKd~~P~W~p  371 (407)
T PLN02851        358 ARLVDKDFAPKWDP  371 (407)
T ss_pred             HHhcCCCCCCCCCC
Confidence            9875  24555544

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=3.2e-40  Score=332.70  Aligned_cols=191  Identities=25%  Similarity=0.354  Sum_probs=168.5

Q ss_pred             EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC--CCcccccchhHHHHH
Q 007805           15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV   90 (589)
Q Consensus        15 v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~   90 (589)
                      +++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....  ......+....++++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            4669999996 6999999999999999999999999999999999 69999999998764311  111111222233455


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCC
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~  170 (589)
                       +.+..+||||||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++
T Consensus       118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence             6789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcceecCchHH------------HHHHHHHHHHHHhcChh
Q 007805          171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP  206 (589)
Q Consensus       171 a~~A~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~  206 (589)
                      |+||+++||||+|||++++            ++.+.++++.+...++.
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  244 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA  244 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence            9999999999999999988            78888888888887765

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=6.8e-40  Score=322.56  Aligned_cols=198  Identities=24%  Similarity=0.339  Sum_probs=169.6

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 007805            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (589)
                      +.+++ +++|++|+||||+.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            56777 789999999999889999999999999999999998875 7777999999999999998643211111 11122


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCC-CChhhhhhHhhhcCHHHH-H
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I  160 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~-p~~g~~~~l~~~~G~~~a-~  160 (589)
                      ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++++|++++|..++ +
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~  158 (239)
T PLN02267         81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARR  158 (239)
T ss_pred             HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHH
Confidence            2334556 67899999999999999999999999999999998 568999999999997 554 58899999999999 6


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChh
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKP  206 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~  206 (589)
                      +++++|++++|+||+++||||++||+ +++.+++.++|++|++.+++
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~  205 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWN  205 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCc
Confidence            99999999999999999999999985 68999999999999998653

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-39  Score=300.36  Aligned_cols=253  Identities=22%  Similarity=0.279  Sum_probs=224.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |.++.+.+++ ++++.+|.+| ||+ .|+++.+++.++..++..+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus         4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~   82 (266)
T KOG0016|consen    4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA   82 (266)
T ss_pred             ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence            5677888898 8999999999 996 699999999999999999999999999999999999999999998875433321


Q ss_pred             ccc---cchhH--HHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh
Q 007805           79 VSL---MPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (589)
Q Consensus        79 ~~~---~~~~~--~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~  153 (589)
                      ...   .....  ...+.+.+.++|||+||.|||+|+|.|..+...||+|+|+|+++|..|+.++|+.|++|+++.+|++
T Consensus        83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i  162 (266)
T KOG0016|consen   83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI  162 (266)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence            111   11111  1224477899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH
Q 007805          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (589)
Q Consensus       154 ~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (589)
                      +|...|.||++.|++++|+||.+.|||++++|.+++.+.+..-++++++.+|..++                        
T Consensus       163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------  218 (266)
T KOG0016|consen  163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------  218 (266)
T ss_pred             hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999999887654                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhh
Q 007805          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (589)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r  290 (589)
                                  ..|++++......+..+.+.|.....+.|.|+|+.+.+.+|+.+.
T Consensus       219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence                        346777777777888999999999999999999999999998764

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=2.9e-39  Score=293.37  Aligned_cols=252  Identities=29%  Similarity=0.389  Sum_probs=205.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCCcCCCCchhhhhc---cC
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG   75 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~   75 (589)
                      |+.|.++...++|+.|++|||+ +|++.+..+.||.+++..++.|++|.+|||||.  | .+||+|+|-+-....   ..
T Consensus        17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            5678899844899999999996 799999999999999999999999999999985  3 679999998654321   11


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ++....+.  ..++ .+.|+.+||||||.|+|.++|||-.|-+.||+.||+++|+|+....++|-+-++.|+..|.|.+|
T Consensus        97 d~~~~rLn--vLdl-QrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447          97 DDGIPRLN--VLDL-QRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             CccCcccc--hhhH-HHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence            11111111  1133 36789999999999999999999999999999999999999999999999988888889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|+|+.+.++.++|+||+++||||.|||.++|++++.+|++++.++||.++|.+                        
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------  229 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------  229 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999999877633                        


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                  |-+++. ...++.-.-+.--.+..-.+.|+|++|+..||++||+|..
T Consensus       230 ------------K~Afna-d~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf  275 (282)
T COG0447         230 ------------KAAFNA-DCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF  275 (282)
T ss_pred             ------------HHHhcC-CCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence                        222221 1112211111222233345679999999999999999864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=1e-37  Score=293.43  Aligned_cols=180  Identities=40%  Similarity=0.620  Sum_probs=161.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (589)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..+++|.+++.+.+..+++++++++++.+.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999997777999


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHH
Q 007805          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI  469 (589)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~  469 (589)
                      +||||+||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeeEEEcCC
Q 007805          470 LDLMTVGKIIKKVPVVVGNC  489 (589)
Q Consensus       470 ~~~~~l~~~lG~~~v~v~d~  489 (589)
                      +.+.++++.+||.|++++|.
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-38  Score=312.85  Aligned_cols=261  Identities=39%  Similarity=0.603  Sum_probs=248.5

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCC
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES  398 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~  398 (589)
                      ||++||..+..+|++|++.|.|...++.+..++...+.+.+.+++++..+.......+..+.|++.++++|+|||+|.|+
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 007805          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI  478 (589)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~  478 (589)
                      +++|++++.+|++.+++++|+.||||+++++.+++.+..+++++|+|||+|.+.++++|++.+..|+..++..+...-..
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEcCCCCcccccccHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 007805          479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR  557 (589)
Q Consensus       479 lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~-Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~  557 (589)
                      .|+.|+++++.+||.+||++.+|.+++.+++.+ |++|.++|.++..||||+||+.+.|..|+|+..++...+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999988888 9999999999999999999999999999999877776665555443


Q ss_pred             CCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          558 SFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       558 ~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                           +.++|++.|+.|+   +|||.|+.+
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~  265 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARG  265 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccc
Confidence                 7889999999999   999999875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=5.2e-37  Score=332.98  Aligned_cols=243  Identities=25%  Similarity=0.330  Sum_probs=208.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++||+|||+|+||++||..|+++|++|++||+++++++...+.+.......-   .+... .....+++++++++ ++++
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~   79 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA   79 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence            6789999999999999999999999999999999998765433322221111   11111 11123457778888 6789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+||||+||+.++|+++|+++.+++++++||+|+||+++++.+++.+..+.++++.|||||++.++++|+++++.|++
T Consensus        80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~  159 (495)
T PRK07531         80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP  159 (495)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---CcHHHHHHHhch
Q 007805          467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY  540 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~G-v~~~~iD~~~-~~~g~p---~Gpf~~~D~~Gl  540 (589)
                      ++++.++++++.+|++++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++   +|||++.|+.|+
T Consensus       160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~  239 (495)
T PRK07531        160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG  239 (495)
T ss_pred             HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence            99999999999999999999 69999999999999999999999997 5999999999 788875   899999999985


Q ss_pred             H-HHHHHHHHHHHhC
Q 007805          541 G-VAAATSKEFDKAF  554 (589)
Q Consensus       541 d-~~~~~~~~l~~~~  554 (589)
                      + .+.+.++++.+.+
T Consensus       240 ~~g~~~~~~~~~~~~  254 (495)
T PRK07531        240 EAGMRHFLAQFGPCL  254 (495)
T ss_pred             HHHHHHHHHHhchhh
Confidence            4 4566666665554

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=285.23  Aligned_cols=230  Identities=26%  Similarity=0.411  Sum_probs=215.3

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhc----CCCCHHHHHHHhhcccccCCc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR----GKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +..||+|+|.|.+|+++|..++..||+|.+||+.++++..+.+.+++.+.++-+.    |.++   ++..+..|+.++++
T Consensus         2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnls---a~eqla~is~t~~l   78 (313)
T KOG2305|consen    2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLS---ADEQLALISGTTSL   78 (313)
T ss_pred             CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCcc---HHHHHHHHhCCccH
Confidence            4689999999999999999999999999999999999999999999998887665    5555   45567889999999


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecC
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT  461 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~  461 (589)
                       |.+++|=.|-||+||++++|+++|++|+..+.+.+|++|+||++.++...+.+.+.++++..||.|||+.+|++|++|.
T Consensus        79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa  158 (313)
T KOG2305|consen   79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA  158 (313)
T ss_pred             HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence             7899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCC---cHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL  535 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~---Gpf~~~  535 (589)
                      +.|+++++++.+++++.+|..||.. ++.-||..||++++++||..++++.|+ +..|+|.+| .|+|.+.   ||+|++
T Consensus       159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~  238 (313)
T KOG2305|consen  159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA  238 (313)
T ss_pred             CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence            9999999999999999999999988 789999999999999999999999997 999999999 9999763   999998


Q ss_pred             HHhc
Q 007805          536 DLAG  539 (589)
Q Consensus       536 D~~G  539 (589)
                      ++.-
T Consensus       239 HLNA  242 (313)
T KOG2305|consen  239 HLNA  242 (313)
T ss_pred             hcCc
Confidence            8764

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=8.8e-37  Score=329.81  Aligned_cols=204  Identities=22%  Similarity=0.308  Sum_probs=176.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCCcCCCCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI   67 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p-----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g-~~F~aG~Dl   67 (589)
                      |+++++.+++ +++|++|+||||           +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            6788999999 789999999954           469999999999999999999 78999999999974 899999999


Q ss_pred             hhhhhccCCCcccccch---hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccc-cCCC
Q 007805           68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI  141 (589)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~-~Gl~  141 (589)
                      +++....... ......   .....+.+.+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9875321111 001111   11122325677899999999999999999999999999999987  899999997 9999


Q ss_pred             CChhhhhhHh--hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChh
Q 007805          142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (589)
Q Consensus       142 p~~g~~~~l~--~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (589)
                      |++|++++|+  +++|..+|++|++||++++|+||+++||||++||++++.+++.++|++|++.||.
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998  7899999999999999999999999999999999999999999999999999874

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=8.6e-37  Score=328.56  Aligned_cols=202  Identities=22%  Similarity=0.323  Sum_probs=174.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCCcCCCCchh
Q 007805            3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV   69 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p-----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~-g~~F~aG~Dl~~   69 (589)
                      ++++.+++ +++|++|+||||           +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus        10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~   88 (546)
T TIGR03222        10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM   88 (546)
T ss_pred             CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence            46788998 789999999996           469999999999999999999 7899999999987 589999999998


Q ss_pred             hhhccCCCcccccchhHH---HHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccc-cCCCCC
Q 007805           70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG  143 (589)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~-~Gl~p~  143 (589)
                      +....... .........   ..+.+.+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|+
T Consensus        89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~  167 (546)
T TIGR03222        89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG  167 (546)
T ss_pred             Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence            74321111 011111111   11224577899999999999999999999999999999986  799999997 999999


Q ss_pred             hhhhhhHh--hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChh
Q 007805          144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (589)
Q Consensus       144 ~g~~~~l~--~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (589)
                      +|++++++  +++|..+|++|++||++++|+||++|||||+|||++++++++.++|++|++.||.
T Consensus       168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence            99999997  7999999999999999999999999999999999999999999999999998864

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.8e-36  Score=290.82  Aligned_cols=192  Identities=44%  Similarity=0.704  Sum_probs=173.5

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (589)
                      +.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++........ ...+.
T Consensus         1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~   79 (195)
T cd06558           1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI   79 (195)
T ss_pred             CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence            35677 6799999999997 799999999999999999999999999999999999999999999876433221 12333


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~  163 (589)
                      ....+++ +.+.++|||+||++||+|.|+|++++++||+||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus        80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            4445666 678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHH
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD  199 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~  199 (589)
                      ++|++++++||+++||||+++|.+++.+++.+++++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            999999999999999999999999999999988875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.1e-35  Score=263.58  Aligned_cols=245  Identities=23%  Similarity=0.341  Sum_probs=206.5

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      +++|-.|+||+|+ +|+++.+|+.+|.+.+..-.++.++|+|||+..|+.||+|.||+++...+..+..........+.+
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm  118 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM  118 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence            6899999999996 799999999999999999888889999999999999999999999976443332223334444566


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCC
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~  170 (589)
                       .-|+++|+|||+-|||.|..+||.|...||+++|+++++|..|-..+|++-..-| .-|.|.+++..+.+|++||++++
T Consensus       119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~  196 (287)
T KOG1682|consen  119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT  196 (287)
T ss_pred             -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence             5699999999999999999999999999999999999999999999999643333 34789999999999999999999


Q ss_pred             HHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007805          171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV  250 (589)
Q Consensus       171 a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  250 (589)
                      ++||+..|||++|||++++..++.+++..|-..+...+.            .-                        |+-
T Consensus       197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lg------------------------k~f  240 (287)
T KOG1682|consen  197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LG------------------------KEF  240 (287)
T ss_pred             hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HH------------------------HHH
Confidence            999999999999999999999999999999887653321            00                        122


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                      ......++..+++..-.+.+.+.++-.|.+|+|.+|++||.|.|
T Consensus       241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~  284 (287)
T KOG1682|consen  241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW  284 (287)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence            23333445667777788888899999999999999999998775

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=3.6e-31  Score=258.79  Aligned_cols=290  Identities=24%  Similarity=0.313  Sum_probs=215.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcc--
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDV--   79 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~--   79 (589)
                      ..|.++. .+....||||||+ .|++|.+|...+.-.+..++.++.+++||+.|. |++||+|+|+........+...  
T Consensus        38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~  116 (401)
T KOG1684|consen   38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE  116 (401)
T ss_pred             CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence            4677887 7889999999997 799999999999999999999999999999887 5899999999866543322221  


Q ss_pred             -cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                       ..+...-..+. ..+.++.||.||.++|..+|||++|+...-||||+|++.|++||+.+|++|+.|++++|+|+.| ..
T Consensus       117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l  194 (401)
T KOG1684|consen  117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL  194 (401)
T ss_pred             HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence             11222112333 5688999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhh----hcc---------------CC---
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT---------------DK---  216 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~----~~~---------------~~---  216 (589)
                      ..++.|||+++++.||+..||.++.||.+.+..-=.++...+...|...+...    ...               ++   
T Consensus       195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs  274 (401)
T KOG1684|consen  195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS  274 (401)
T ss_pred             HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence            99999999999999999999999999987764433344422222221111111    000               00   


Q ss_pred             CCChHHHHHHHHH----------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHH
Q 007805          217 LGSLSEAREVLKL----------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV  285 (589)
Q Consensus       217 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a  285 (589)
                      ..+..+..+.++.          +....|+...-.| ..+-+.+.+.++....+++.+..|-+.-.....+.|+.|+++|
T Consensus       275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA  354 (401)
T KOG1684|consen  275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA  354 (401)
T ss_pred             cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence            0011222222211          1111222222223 4556678888998899999999999998889999999999999


Q ss_pred             HHHh--hhccCCC
Q 007805          286 FFAQ--RATSKVP  296 (589)
Q Consensus       286 f~~~--r~~~~~~  296 (589)
                      -+-.  +.|||.|
T Consensus       355 ~LIDKd~~PKW~p  367 (401)
T KOG1684|consen  355 VLIDKDQNPKWDP  367 (401)
T ss_pred             eeecCCcCCCCCC
Confidence            8632  4555543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.95  E-value=9.6e-28  Score=260.01  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=151.7

Q ss_pred             CCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805          413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (589)
Q Consensus       413 ~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf  492 (589)
                      +.+++++++..++.+.+..+....+|+|++|+|||+|++.++++|+++++.|++++++.+.++++.+||.|++++|.|||
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf  417 (507)
T PRK08268        338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF  417 (507)
T ss_pred             ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence            45777777777776666666666788999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCC-CCCchHHHHHHHH
Q 007805          493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLK  569 (589)
Q Consensus       493 i~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~  569 (589)
                      |+||++.+++|||++++++|+ +++|||.++ .++|||+|||+|+|.+|+|+++++++++++.+++ ++.|+++|++|++
T Consensus       418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~  497 (507)
T PRK08268        418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA  497 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence            999999999999999999998 999999999 8999999999999999999999999999999996 5569999999999


Q ss_pred             cCCCCccccee
Q 007805          570 SGRNGNKGFSF  580 (589)
Q Consensus       570 ~g~~G~~Gfy~  580 (589)
                      +|    +.||.
T Consensus       498 ~G----~~~~~  504 (507)
T PRK08268        498 LG----LSLRS  504 (507)
T ss_pred             cC----CCcCC
Confidence            99    77865

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.89  E-value=1e-23  Score=178.36  Aligned_cols=91  Identities=40%  Similarity=0.615  Sum_probs=84.7

Q ss_pred             CcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCCCC-chHHHHHH
Q 007805          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL  567 (589)
Q Consensus       491 Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~  567 (589)
                      |||+||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999996 999999999 7899999999999999999999999999999998844 79999999


Q ss_pred             HHcCCCCc---ccceee
Q 007805          568 LKSGRNGN---KGFSFL  581 (589)
Q Consensus       568 v~~g~~G~---~Gfy~y  581 (589)
                      +++|++|+   +|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999   999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.89  E-value=7.7e-23  Score=221.09  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcH
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP  531 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gp  531 (589)
                      ..+||++++.|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            468899999999999999999999999999999999999999999999999999999998 899999999 899999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHhCCC-CCCchHHHHHHHHcCC
Q 007805          532 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR  572 (589)
Q Consensus       532 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~  572 (589)
                      |+|+|.+|||++++++++|++.+++ ++.|+++|++|+..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            9999999999999999999999996 4558999999999983

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.79  E-value=7e-19  Score=165.68  Aligned_cols=145  Identities=19%  Similarity=0.135  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCcc
Q 007805           30 IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLA  109 (589)
Q Consensus        30 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a  109 (589)
                      .-.+.+|.++++++++|+++|+|||++    ||.|.|+....             ...+.+ +.+.+++|||||++||.|
T Consensus        21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a   82 (177)
T cd07014          21 NVSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNA   82 (177)
T ss_pred             CcCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCch
Confidence            346789999999999999999999987    68898876531             122344 567789999999999999


Q ss_pred             cchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh--------hHhhhcC--HHHHHHHHHcCCCCCHHHHHHcCC
Q 007805          110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGL  179 (589)
Q Consensus       110 ~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~--------~l~~~~G--~~~a~~l~ltg~~~~a~~A~~~Gl  179 (589)
                      .|+|+.|+++||+++++++++|+.+.+..+..+......        .+++..|  ....++++..|.+++|++|++.||
T Consensus        83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL  162 (177)
T cd07014          83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL  162 (177)
T ss_pred             hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence            999999999999999999999999988776433222222        4455555  788899999999999999999999


Q ss_pred             cceecCchHHHHH
Q 007805          180 IDAVVTSEELLKV  192 (589)
Q Consensus       180 v~~vv~~~~l~~~  192 (589)
                      ||++.+.+++.+.
T Consensus       163 VD~v~~~~e~~~~  175 (177)
T cd07014         163 VDSLGSFDDAVAK  175 (177)
T ss_pred             cccCCCHHHHHHH
Confidence            9999998887653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.78  E-value=2.1e-18  Score=170.80  Aligned_cols=188  Identities=19%  Similarity=0.184  Sum_probs=140.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      .||+|||+|.||.+||.+|.++||+|++||+++++.....          .+.|             .....+. +++++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G-------------a~~a~s~~eaa~~   57 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG-------------ATVAASPAEAAAE   57 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC-------------CcccCCHHHHHHh
Confidence            4799999999999999999999999999999999843321          1222             2333444 78899


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCC--------CCe
Q 007805          388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPL  455 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~--------~~l  455 (589)
                      ||+||.|||++.++...++.  .+.+.++++++++++|+.-+..  ++++.+..    .|.+|.+.|..        +.+
T Consensus        58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtL  133 (286)
T COG2084          58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTL  133 (286)
T ss_pred             CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCce
Confidence            99999999999888888874  5888899999998766543332  33333322    26677665533        344


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCc---ccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSF  525 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~Gf---i~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~  525 (589)
                      ..++.+   +++.+++++++++.+|++++++++. .|.   ++|.++...    +.||+.+.++ |++++.+..++ .+.
T Consensus       134 timvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~  210 (286)
T COG2084         134 TIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA  210 (286)
T ss_pred             EEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence            445555   8999999999999999999999765 333   447765443    3499999987 99999999999 544


Q ss_pred             C
Q 007805          526 G  526 (589)
Q Consensus       526 g  526 (589)
                      +
T Consensus       211 ~  211 (286)
T COG2084         211 A  211 (286)
T ss_pred             c
Confidence            3

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.77  E-value=5.2e-18  Score=160.90  Aligned_cols=150  Identities=25%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        16 ~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      ++|.++.    .++..+...+.+.++.+++++ ++.|+|.=.    |.|+++..                ...++ +.|.
T Consensus         2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~----------------~~~i~-~~l~   55 (187)
T cd07020           2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDS----------------TREIV-QAIL   55 (187)
T ss_pred             EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence            4566653    366778889999999998765 788888511    22333322                12445 5678


Q ss_pred             hCCCcEEEEeC---CcccchhhHHhhhcCEEEEeCCceEeccccccCCCCCh--------------hhhhhHhhhcCH--
Q 007805           96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL--  156 (589)
Q Consensus        96 ~~~kp~iaav~---G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~--------------g~~~~l~~~~G~--  156 (589)
                      .+|||||++|+   |.|.|||+.|+++||+++++++++|+.+++..+..+..              +....+++..|.  
T Consensus        56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~  135 (187)
T cd07020          56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA  135 (187)
T ss_pred             hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            89999999999   99999999999999999999999999999985544432              245578899998  


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCch-HHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK  191 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~-~l~~  191 (589)
                      .++.+++++|+.++++||+++||||++++++ ++..
T Consensus       136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~  171 (187)
T cd07020         136 EWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK  171 (187)
T ss_pred             HHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence            6899999999999999999999999999886 5654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.73  E-value=2.2e-17  Score=168.44  Aligned_cols=187  Identities=18%  Similarity=0.228  Sum_probs=134.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      ||+|||+|.||.+||..|+++|++|++||+++++.+.+.           +.|.             ...++. +.+++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~-------------~~~~~~~~~~~~a   56 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA-------------VTAETARQVTEQA   56 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------cccCCHHHHHhcC
Confidence            599999999999999999999999999999998876642           2221             112333 668899


Q ss_pred             CEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCC-------CCeee
Q 007805          389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE  457 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~-------~~lve  457 (589)
                      |+||+|+|++..++..++.  .+.+.++++++|++.++..+.+  ++.+.+...    +.||.++|..       ...+.
T Consensus        57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            9999999988777766553  3667788888887544433322  344444322    3444333211       12234


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC---cccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~G---fi~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      ++.+  .++++++.++++++.+|++++++++ .+|   .++|+++.+.    ++|++.+.++ |++++++..++ .+.+
T Consensus       133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            4444  2789999999999999999999965 556   4778887765    7899998877 89999999999 4544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.72  E-value=3.1e-16  Score=158.70  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=119.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (589)
                      ||+|||+|+||++||..|.++|++|++||++++.++.+.           +.|.++           ...++.+.+++||
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~aD   59 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDCD   59 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCCC
Confidence            799999999999999999999999999999998877752           223211           1233446678999


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCeee
Q 007805          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE  457 (589)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lve  457 (589)
                      +||+|+|  .....++++++.++++++++|++ ++++....+........+|+++||+.++.            ......
T Consensus        60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         60 LVILALP--IGLLLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             EEEEcCC--HHHHHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            9999999  44456788999999999988754 44555555554444455799999965442            345566


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      +++++.++++.++.+.++++.+|++++++.
T Consensus       137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~  166 (279)
T PRK07417        137 LTPTENTDLNALAIVEELAVSLGSKIYTAD  166 (279)
T ss_pred             EccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            889999999999999999999999999884

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.71  E-value=9.8e-17  Score=164.11  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=136.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +++|+|||+|.||.++|..+++.|++|++||+++++.+...           +.|             +..++++ +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            45899999999999999999999999999999998866532           112             2233444 5678


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Ce
Q 007805          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~-------~l  455 (589)
                      +||+||+|+|++..++..++  ..+.+.++++++|++.++..+..  ++.+.+...    +.||.++|..+       ..
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~  133 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT  133 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence            99999999998887766654  34777888999887544443322  344443321    45665544322       22


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc---cccccHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF  525 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi---~nRi~~~----~~~Ea~~l~~~-Gv~~~~iD~~~-~~~  525 (589)
                      +.++.+  .+++.++.+.++++.+|+.++++++ .+|++   +|+++.+    .++|++.++++ |+++++++.++ .++
T Consensus       134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~  211 (296)
T PRK11559        134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL  211 (296)
T ss_pred             EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence            344444  2689999999999999999999964 56775   6776554    47899999876 89999999998 544


Q ss_pred             C
Q 007805          526 G  526 (589)
Q Consensus       526 g  526 (589)
                      +
T Consensus       212 ~  212 (296)
T PRK11559        212 A  212 (296)
T ss_pred             c
Confidence            4

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.66  E-value=1.5e-15  Score=159.49  Aligned_cols=171  Identities=20%  Similarity=0.190  Sum_probs=125.3

Q ss_pred             ccceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .+++|+||| +|.||+++|..|..+|++|++||+++..  .                      .            .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------A------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------H------------HHHH
Confidence            578999999 9999999999999999999999986320  0                      0            0335


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCeee--EecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT  461 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve--iv~~  461 (589)
                      ++||+||+|+|++  ...++++++.+ +++++||++++|.  .++..+.....  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP~~--~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVPIH--LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCcHH--HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            7899999999955  46788899988 8999999998875  34556655443  3699999998886554433  5556


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCCccccccc--HHH--HHHHHHHHHcCCCHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAF--FPY--SQSARLLVSLGVDVFRI  518 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~-d~~Gfi~nRi~--~~~--~~Ea~~l~~~Gv~~~~i  518 (589)
                      +.++++.++.+.++++.+|++++.+. +.+..++..+.  -.+  +.++..+.+.+.+.+++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            67888999999999999999999983 34443333322  112  22455555666665554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.64  E-value=6.5e-15  Score=148.29  Aligned_cols=186  Identities=19%  Similarity=0.126  Sum_probs=137.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC----eEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      +||+|||+|+||.+|+..|.++|+    +|++| |+++++.+.+.           +.|             +...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            469999999999999999999998    89999 99988765431           112             2333444 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT  461 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~  461 (589)
                      +.+++||+||+|++  ++...+++.++.+.++++++|+|.+++++.+.+....+.. ++++.+|..|......+. ++.+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            56789999999996  5567888888988888889888998999999888766544 788889988877666555 4567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C---Ccccc-cccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T---GFAVN-RAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~---Gfi~n-Ri~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ..++++..+.++++++.+|. ++++.+.  .   |.... ..+..++.|++  .....|+++++.-.++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~  201 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLA  201 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            78899999999999999999 7776431  0   10111 11233334443  2445699999887776

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.64  E-value=8.1e-15  Score=153.52  Aligned_cols=207  Identities=16%  Similarity=0.103  Sum_probs=140.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|+||++||..|.++|++|.+|+++++..+....         ...+..+           ..++++ +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998876443211         1112111           122344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCC------------CC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HV  452 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~------------~~  452 (589)
                      ||+||+|+|.  ....+++.++.+ .++++++|++.+|.  ..++.+........+|++.||+...            ..
T Consensus        61 aDlVilavP~--~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVPV--DATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCCH--HHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            9999999994  567899999987 47888888765554  2334455544566789999986543            12


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCccccccc--HHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 007805          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAF--FPYSQSARLLVSLGVDVFRIDSAIRSFGLP-  528 (589)
Q Consensus       453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~--~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p-  528 (589)
                      +....+++++.++++.++.+.++++.+|++++++ .+.+..++..+.  -.++.+++ ....+.+.++.-. +.+-||. 
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~-la~~gfrd  216 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALR-LAAGGFRD  216 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHh-hhcccccC
Confidence            3445588888999999999999999999999988 556666666653  23444544 1222332222211 2333442 


Q ss_pred             ------CcHHHHHHHhc
Q 007805          529 ------IGPFQLLDLAG  539 (589)
Q Consensus       529 ------~Gpf~~~D~~G  539 (589)
                            .-|-.|.|.+-
T Consensus       217 ~tRia~~~p~~w~di~~  233 (359)
T PRK06545        217 ITRIASSDPGMWRDILE  233 (359)
T ss_pred             CccccCCCHHHHHHHHH
Confidence                  27777888765

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.64  E-value=1.7e-14  Score=140.12  Aligned_cols=194  Identities=19%  Similarity=0.165  Sum_probs=134.0

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      ++.++||+||+|+||.+|+.+|.++||.|++|||+.++.+..           .+.|.             +...++ |.
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeV   88 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEV   88 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHH
Confidence            357899999999999999999999999999999999987764           33331             223344 77


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCH---HHHhcccC-CCCcEEEecC---CCCCCCCCe
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTS-SQDRIIGAHF---FSPAHVMPL  455 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~---~~~~~~~~-~~~r~ig~h~---~~p~~~~~l  455 (589)
                      +++||+||.+||+..+++..++..  +...++++...+..+|++.+   .++++... +..+|+-..-   ..++..+.|
T Consensus        89 ae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~L  168 (327)
T KOG0409|consen   89 AEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTL  168 (327)
T ss_pred             HhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeE
Confidence            899999999999888888887765  33434454433222333333   35555443 3334443322   122234445


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCc---ccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSF  525 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~Gf---i~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~  525 (589)
                      ..++.|   +++.++++.++++.+||++++++.. -|.   +.|.++.+.    +.|++.+.+. |+++..+-.++ .+-
T Consensus       169 timagG---de~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~  245 (327)
T KOG0409|consen  169 TIMAGG---DEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGR  245 (327)
T ss_pred             EEEecC---cHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Confidence            555554   8999999999999999999999653 332   446665443    3499988876 99999888887 543


Q ss_pred             C
Q 007805          526 G  526 (589)
Q Consensus       526 g  526 (589)
                      .
T Consensus       246 ~  246 (327)
T KOG0409|consen  246 C  246 (327)
T ss_pred             c
Confidence            3

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.63  E-value=1e-15  Score=148.02  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=114.5

Q ss_pred             cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        14 ~v~~i~l~~p--~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      +|++|.++.|  + .+..+...+.+|.++|+.+..||++|+|||+    .||+|+|+..+..             ....+
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l   63 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL   63 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence            4778888766  3 3444566789999999999999999999997    7999999977532             12334


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccc------------cccCCCC---Chhhh--------
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE------------LTLGVIP---GFGGT--------  147 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe------------~~~Gl~p---~~g~~--------  147 (589)
                       +.++.++||+||+++|.|.|+|+.|+++||++++++++.|+..-            -++|+-+   -.++.        
T Consensus        64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~  142 (211)
T cd07019          64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA  142 (211)
T ss_pred             -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence             56788999999999999999999999999999999999886322            1122211   01000        


Q ss_pred             ------hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHH
Q 007805          148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (589)
Q Consensus       148 ------~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~  191 (589)
                            ..+                 .|.+. ....+-+..|..+++++|++.||||++-..++..+
T Consensus       143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~-~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~  208 (211)
T cd07019         143 LPPEAQLGLQLSIENGYKRFITLVADARHST-PEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  208 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence                  000                 01111 11233355788999999999999999987766544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.61  E-value=2.7e-14  Score=143.39  Aligned_cols=188  Identities=15%  Similarity=0.158  Sum_probs=143.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.++          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            379999999999999999999885    699999999887664221          11             2233344 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE  462 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~~  462 (589)
                      .+++||+||.|+|  +....++++++.++++++++|+|...+++++.+...++...+++..+|+.|...+..+..+ +++
T Consensus        60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            6789999999998  5778888999999898999999999999999999988766689999999999888777765 677


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCC--CCccc-cc---ccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFAV-NR---AFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--~Gfi~-nR---i~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ..+++..+.+..+++.+|...++ .|.  ..+.+ .-   -+..++.|++  ..++.|++.++.....
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~  204 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFA  204 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999998544 321  11100 00   1233445655  4556688888777665

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.61  E-value=3.3e-14  Score=143.30  Aligned_cols=188  Identities=18%  Similarity=0.164  Sum_probs=136.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      |++|+|||+|.||++++..+.++|   ++|.+||+++++.+...+.+          |             +..+.+. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence            568999999999999999999999   78999999988766542210          1             1223344 4


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE  462 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~~  462 (589)
                      .+.++|+||+|+|  +....++++++.+.+  +++|+|.+++++.+.+...++...+++..||..|......+. ++++.
T Consensus        59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            5789999999998  666778888888876  467788899999988888776667899999998877666555 55777


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC--CCCcc-cccc---cHHHHHHHH-H-HHHcCCCHHHHHHHH
Q 007805          463 RTSAQVILDLMTVGKIIKKVPVVVGN--CTGFA-VNRA---FFPYSQSAR-L-LVSLGVDVFRIDSAI  522 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~lG~~~v~v~d--~~Gfi-~nRi---~~~~~~Ea~-~-l~~~Gv~~~~iD~~~  522 (589)
                      .++++..+.++.+++.+|..+++..+  ..... ..-.   +..++.|++ . ..+.|+++++..+++
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~  202 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA  202 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999975544322  11111 1111   112333544 3 345699998876665

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.60  E-value=2.1e-14  Score=145.50  Aligned_cols=190  Identities=15%  Similarity=0.152  Sum_probs=136.6

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      +.+||+|||+|+||.+|+..|+++|    ++|++||++++ +++....          +.|             +..+.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~   58 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN   58 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence            3468999999999999999999998    78999999764 4443211          001             223344


Q ss_pred             c-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEe
Q 007805          382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIV  459 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv  459 (589)
                      . +.+++||+||.|||  ++...+++.++.+.++++++|+|..++++++.+....+...++++.||+.|..... +.-++
T Consensus        59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~  136 (279)
T PRK07679         59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS  136 (279)
T ss_pred             HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence            4 56789999999998  55566788889888888899999889999998888776556799999977765533 44455


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC--Ccccc----cccHHHHHHHHH--HHHcCCCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT--GFAVN----RAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~--Gfi~n----Ri~~~~~~Ea~~--l~~~Gv~~~~iD~~~  522 (589)
                      +++..+++..+.++++++.+|...+ +.+.-  .+.+.    .-+..++.|++.  ....|++.++.-.++
T Consensus       137 ~~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~  206 (279)
T PRK07679        137 PSKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLI  206 (279)
T ss_pred             eCCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            7878889999999999999998554 32211  00000    002344456553  446699998887776

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.59  E-value=2.5e-14  Score=142.91  Aligned_cols=166  Identities=16%  Similarity=0.182  Sum_probs=124.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--cc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  383 (589)
                      .++|+|+|+|.||+++|..+..+|+.|.+++++.+  +++.+           .+.|..+           ..+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence            57899999999999999999999998866665544  44332           2233322           11122  26


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCC------CCCe
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAH------VMPL  455 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~------~~~l  455 (589)
                      .+.++|+||.|||  +....++++++.++++++++|++.+|+  -+++.+....+...+|++.||+..++      ....
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            6788999999999  888889999999999999999987775  34555555554323899999977762      3455


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRA  497 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi  497 (589)
                      +.+++++.++.+.++.++++++.+|.+++.+ .+.+-.+.-.+
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~v  181 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAV  181 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHH
Confidence            6688898899999999999999999999998 34444444433

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.59  E-value=3.1e-14  Score=145.23  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=127.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||.+||..|+++|++|++||+++++.+...+           .|             +...++. +.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence            58999999999999999999999999999999998766421           12             1233344 66789


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805          388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                      ||+||+|+|++..++..+..  .+.+.+++++++++.++..+.  .++...+. +..+|+...-...+   ..+.++.++
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~  137 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA  137 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence            99999999987666655442  466677888887655444333  23433332 22344433322221   233344454


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-C---ccccccc----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-G---fi~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+   +++++++++++++.+|++++++++.. |   -++|.++    ...+.|++.+.+. |++++.+=.++
T Consensus       138 gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l  206 (296)
T PRK15461        138 GG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM  206 (296)
T ss_pred             CC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            55   88999999999999999999987632 1   1234332    3445799988876 99998866666

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.56  E-value=2.5e-15  Score=139.57  Aligned_cols=152  Identities=15%  Similarity=0.077  Sum_probs=102.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      |+||+|||+|.||.+||.+|+++||+|++||+++++.++..+           .             .....+++ +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence            689999999999999999999999999999999998877522           1             24555666 6788


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeE
Q 007805          387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (589)
                      +||+||.|+|++.+ .++++.+  +.+.++++.+|+..++..+-  .++.+.+. +..+|+-......+   ..+.+.-+
T Consensus        57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~  135 (163)
T PF03446_consen   57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM  135 (163)
T ss_dssp             HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred             cccceEeecccchh-hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence            99999999996555 4566666  88889999988754443332  23333332 22233333222111   23455667


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEE-c
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVV-G  487 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v-~  487 (589)
                      +.|   +++++++++++++.+|++++++ +
T Consensus       136 ~gG---~~~~~~~~~~~l~~~~~~v~~~~G  162 (163)
T PF03446_consen  136 VGG---DEEAFERVRPLLEAMGKNVYHYVG  162 (163)
T ss_dssp             EES----HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred             ccC---CHHHHHHHHHHHHHHhCCceeeeC
Confidence            777   7899999999999999998854 5

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.55  E-value=2.9e-14  Score=145.13  Aligned_cols=185  Identities=17%  Similarity=0.135  Sum_probs=127.4

Q ss_pred             EEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEE
Q 007805          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV  391 (589)
Q Consensus       313 IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV  391 (589)
                      |||+|.||.+||..|+++|++|++||+++++.+...           +.|             ...+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence            689999999999999999999999999998876642           122             2233444 668899999


Q ss_pred             EEeccCChHHHHHHH---HHHHHhCCCCcEEEecCCCCCHHH---HhcccC-CCCcEEEecCCC---CCCCCCeeeEecC
Q 007805          392 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFS---PAHVMPLLEIVRT  461 (589)
Q Consensus       392 Ieavpe~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~~-~~~r~ig~h~~~---p~~~~~lveiv~~  461 (589)
                      |.|||.+..+. .++   .++.+.+++++++++.+ ++.++.   +.+.+. +..+|+...-..   +...+.+..++.|
T Consensus        57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg  134 (288)
T TIGR01692        57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGG  134 (288)
T ss_pred             EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECC
Confidence            99999655544 444   57777888888887555 555543   333332 222333321111   1122344445555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCc---ccccccHH----HHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gf---i~nRi~~~----~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                         +++.+++++++++.+|++++++++ ..|.   ++|.++..    .+.|++.+.+. |++++++..++ .+.|
T Consensus       135 ---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       135 ---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             ---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence               678999999999999999999976 4444   33554432    35799988877 89999998888 5544

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.54  E-value=2.9e-13  Score=136.85  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=110.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|..            ....+.+.+.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLV------------DEIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCC------------cccCCHHHHhc
Confidence            79999999999999999999996  7999999998876642           22211            11223333446


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC--CCCcEEEecCCCC-----C-C------CC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP-----A-H------VM  453 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~--~~~r~ig~h~~~p-----~-~------~~  453 (589)
                      ||+||+|+|  +....+++.++.+ ++++++|++.+|+ .. .+...+.  .+.+|++.||+.+     | .      .+
T Consensus        59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~-~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KA-KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hH-HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            999999999  5556678889988 8889988875553 22 1222111  2357999999742     1 1      34


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      ..+.+++++.++++.++.+.++++.+|.+++.+.
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~  167 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD  167 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence            4667888888899999999999999999999984

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.53  E-value=1.9e-13  Score=146.23  Aligned_cols=153  Identities=18%  Similarity=0.144  Sum_probs=120.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+||| +|.||+++|..|.++|++|++||++++.......          +.|             +..+++. +.++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence            3799998 7999999999999999999999999876543211          111             2233444 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCC----CCCCCeeeEec
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSP----AHVMPLLEIVR  460 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p----~~~~~lveiv~  460 (589)
                      +||+||.|+|  +....+++.++.+.++++++|++.+|.  .+...+....+...+|++.||+..    ...+..+.+++
T Consensus        58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            9999999999  455678899999999999999887773  445566666555568999997643    34566777888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      ++.++++.++.+.++++.+|.+++++
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~  161 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVT  161 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            88889999999999999999999987

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.53  E-value=1.8e-14  Score=163.10  Aligned_cols=105  Identities=22%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHH
Q 007805          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAA  544 (589)
Q Consensus       471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~  544 (589)
                      .+.+++..+++.++.+++.+|||+||++.+++|||.+|+++||  +++|||.++ .|+|||+   |||+++|.+|+|.++
T Consensus       626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~  705 (737)
T TIGR02441       626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV  705 (737)
T ss_pred             HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence            3556667778888766789999999999999999999999997  999999999 8999996   999999999999999


Q ss_pred             HHHHHHHHhCCCCCCchHHHHHHHHc-CCCCcccce
Q 007805          545 ATSKEFDKAFPDRSFQSPLVDLLLKS-GRNGNKGFS  579 (589)
Q Consensus       545 ~~~~~l~~~~~~~~~~~~~l~~~v~~-g~~G~~Gfy  579 (589)
                      ++++.+++.+++++.|+++|++|+++ |    +.||
T Consensus       706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g----~~f~  737 (737)
T TIGR02441       706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG----KKFY  737 (737)
T ss_pred             HHHHHHHHHhCCCcCCCHHHHHHHHhcC----CCCC
Confidence            99999999999888899999999999 8    7786

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.51  E-value=3.1e-13  Score=138.89  Aligned_cols=161  Identities=17%  Similarity=0.127  Sum_probs=117.4

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .+++|+|||+|.||.++|..|.+.|+  +|++||+++++++.+.+           .|..           .....+. +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence            46799999999999999999999985  89999999987766421           2211           0122333 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC---------
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV---------  452 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~---------  452 (589)
                      .+++||+||+|+|  ......++.++.+.++++++|++.+|.-  .+..+....+...+|++.||+.+...         
T Consensus        63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            6789999999999  4456788888988899998886654421  12334444444458999999875432         


Q ss_pred             ---CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCC
Q 007805          453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTG  491 (589)
Q Consensus       453 ---~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~-d~~G  491 (589)
                         +..+.+++...++++.++.+.++++.+|.+++++. +.+.
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD  183 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD  183 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence               22345777778899999999999999999999873 3444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.51  E-value=2.1e-13  Score=146.38  Aligned_cols=193  Identities=12%  Similarity=0.089  Sum_probs=128.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~-  384 (589)
                      .+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+..       ...|.          ..+....++ +. 
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence            356799999999999999999999999999999999887753310       00121          011233344 33 


Q ss_pred             --CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCee
Q 007805          385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (589)
Q Consensus       385 --~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (589)
                        ++.+|+||.|||.+..+.. ++..+.+.+.++.||++.++..+.+  .+.+.+. +..+|+++.-...+   ..++ .
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~  145 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-S  145 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-e
Confidence              3459999999997776544 4578888998898888665544332  2333332 23344444433221   3334 3


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCC--c----ccccccHH---HHHHHHHHHHc--CCCHHHHH
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F----AVNRAFFP---YSQSARLLVSL--GVDVFRID  519 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~~G--f----i~nRi~~~---~~~Ea~~l~~~--Gv~~~~iD  519 (589)
                      .++.|   +++++++++++++.++.+      ++++++ +|  .    +.|-+.+.   .+.||+.+++.  |++++++-
T Consensus       146 im~GG---~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~  221 (493)
T PLN02350        146 LMPGG---SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELA  221 (493)
T ss_pred             EEecC---CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34444   899999999999999964      778876 34  2    33555443   34599999875  89999988


Q ss_pred             HHH
Q 007805          520 SAI  522 (589)
Q Consensus       520 ~~~  522 (589)
                      .++
T Consensus       222 ~vf  224 (493)
T PLN02350        222 EVF  224 (493)
T ss_pred             HHH
Confidence            874

>PLN02256 arogenate dehydrogenase

Probab=99.51  E-value=3.3e-13  Score=137.34  Aligned_cols=153  Identities=11%  Similarity=0.019  Sum_probs=113.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ..++|+|||+|.||+++|..+.+.|++|++||+++.. +.+.           +.|             +...++. +.+
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~   89 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFC   89 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHh
Confidence            3468999999999999999999999999999998632 2210           111             1223343 333


Q ss_pred             -CCCCEEEEeccCChHHHHHHHHHH-HHhCCCCcEEEecCC--CCCHHHHhcccCCCCcEEEecCCCCCCCC------Ce
Q 007805          386 -KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTS--TIDLNIVGEKTSSQDRIIGAHFFSPAHVM------PL  455 (589)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts--~~~~~~~~~~~~~~~r~ig~h~~~p~~~~------~l  455 (589)
                       .++|+||+|+|  +....+++.++ .++++++++|++.+|  +.+++.+...++...+|++.||+.++...      ..
T Consensus        90 ~~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~  167 (304)
T PLN02256         90 EEHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP  167 (304)
T ss_pred             hCCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence             47999999999  55677888888 577889999988887  45566777666555579999998877543      11


Q ss_pred             eeEecC----CCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          456 LEIVRT----ERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       456 veiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      +-+.+.    +.++++.++.+.++++.+|.+++.+
T Consensus       168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~  202 (304)
T PLN02256        168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEM  202 (304)
T ss_pred             EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            112221    5678899999999999999999998

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.50  E-value=3.6e-13  Score=136.89  Aligned_cols=186  Identities=19%  Similarity=0.183  Sum_probs=124.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      ||+|||+|.||.+||..|.++|++|++||+++. .+..           .+.|             .....+. +.+++|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence            699999999999999999999999999999874 2221           1222             1222333 567899


Q ss_pred             CEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCHH---HHhccc-CCCCcEEEecCCCCC----CCCCeeeE
Q 007805          389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKT-SSQDRIIGAHFFSPA----HVMPLLEI  458 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~-~~~~r~ig~h~~~p~----~~~~lvei  458 (589)
                      |+||.|||++..++..++.+  +.+.+.++.+|++.++ ..+.   ++.+.+ .+..+|+.. |....    ..+.+.-+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIM  134 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEE
Confidence            99999999887766655442  5566778888775544 3333   333333 233456553 43221    23344445


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----ccccccH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      +.|   +++++++++++++.+|++++++++. |-     ++|.++.    ..+.|++.+.+. |++++.+=.++ .+.+
T Consensus       135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~  209 (292)
T PRK15059        135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA  209 (292)
T ss_pred             EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence            555   7999999999999999999999773 42     2344432    234699988866 99998876666 4443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.49  E-value=5.5e-13  Score=136.25  Aligned_cols=183  Identities=10%  Similarity=0.055  Sum_probs=125.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~  385 (589)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...+           .|..             ...+.    +.+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~-------------~~~s~~~~~~~~   57 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTT-------------GVANLRELSQRL   57 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCc-------------ccCCHHHHHhhc
Confidence            7999999999999999999999999999999998776422           2211             11121    345


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH--Hhccc-CCCCcEEEecCCCCC---CCCCeeeEe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKT-SSQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~-~~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                      .++|+||.|+|.+  ...+++.++.+.++++.+|++.+++.+.+.  +...+ ....+|+..+....+   ..+ +.-++
T Consensus        58 ~~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~  134 (298)
T TIGR00872        58 SAPRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMI  134 (298)
T ss_pred             CCCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-Ceeee
Confidence            6799999999966  567778899999999888887666544332  22222 233345555543222   112 33344


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-CCc----ccccccHHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~~-G--v~~~~iD~~~  522 (589)
                      .|   ++++++.++++++.++.   ..+++++. .|.    +.|-+....   +.|++.+++. |  ++++++-.+|
T Consensus       135 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~  208 (298)
T TIGR00872       135 GG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW  208 (298)
T ss_pred             CC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            44   79999999999999997   46777653 222    224444333   3499999987 4  5999999998

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.48  E-value=1.3e-12  Score=128.59  Aligned_cols=182  Identities=15%  Similarity=0.134  Sum_probs=143.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      ++||+|||+|+||.+|+..|.++|    .+|++.++++++.+...++                      ++... +++. 
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence            368999999999999999999999    5899999999987643221                      11222 3444 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT  461 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~  461 (589)
                      +.+.++|+||+||.  +....+++.++.+ ..++.+|+|...+++++.+...++ ..+++..+|+.|..++..+..+ .+
T Consensus        58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~  133 (266)
T COG0345          58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN  133 (266)
T ss_pred             HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence            67889999999995  6778889999888 778899999999999999999988 7789999999999888777766 46


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE-----------cCCCCcccccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVV-----------GNCTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v-----------~d~~Gfi~nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ...+++..+.+.++++.+|+...+-           +..|.|      ..++.|++  .-+..|++.++.-...
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAy------v~~~iEal~~agv~~Gl~~~~A~~l~  201 (266)
T COG0345         134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAY------VFLFIEALADAGVRLGLPREEARELA  201 (266)
T ss_pred             ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHH------HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            7889999999999999999988764           223332      34455666  4456677776655544

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.48  E-value=5.2e-13  Score=143.18  Aligned_cols=190  Identities=13%  Similarity=0.100  Sum_probs=129.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~-  385 (589)
                      |.+|+|||+|.||++||..|+++||+|++||+++++.+...+...       ..|.           .+..++++ +.+ 
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~   62 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN   62 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence            357999999999999999999999999999999999877533110       0110           12334454 333 


Q ss_pred             --CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC--------CCCe
Q 007805          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL  455 (589)
Q Consensus       386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~--------~~~l  455 (589)
                        +++|+||.+||... ...+++.++.++++++.||++.+++.+.+.........++  |.||...|.        .++ 
T Consensus        63 ~l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--Gi~fldapVSGG~~gA~~G~-  138 (470)
T PTZ00142         63 SLKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--GILYLGMGVSGGEEGARYGP-  138 (470)
T ss_pred             cCCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--CCeEEcCCCCCCHHHHhcCC-
Confidence              36899999988544 4556778999999999999887776655433222111111  455544332        233 


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-CCc----ccccccHHH---HHHHHHHHH--cCCCHHHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRID  519 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~--~Gv~~~~iD  519 (589)
                      .-++.|   ++++++.++++++.++.+      +.++++. .|.    +-|-+.+.+   +.|++.+++  .|++++++-
T Consensus       139 ~lm~GG---~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~  215 (470)
T PTZ00142        139 SLMPGG---NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS  215 (470)
T ss_pred             EEEEeC---CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            323444   799999999999999987      5677652 232    335555443   459999986  589999987


Q ss_pred             HHH
Q 007805          520 SAI  522 (589)
Q Consensus       520 ~~~  522 (589)
                      .++
T Consensus       216 ~v~  218 (470)
T PTZ00142        216 EVF  218 (470)
T ss_pred             HHH
Confidence            776

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.47  E-value=3.8e-13  Score=130.54  Aligned_cols=154  Identities=27%  Similarity=0.313  Sum_probs=105.9

Q ss_pred             EEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHH
Q 007805           15 VAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (589)
Q Consensus        15 v~~i~l~-----~p~-~N~-l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (589)
                      |++|.++     +|. .|+ ++..++.+|.++++.++.|+++++|||+.    +|.|+++....                
T Consensus         2 v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~----------------   61 (214)
T cd07022           2 VAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF----------------   61 (214)
T ss_pred             EEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH----------------
Confidence            4555554     333 354 46789999999999999999999999975    56666654321                


Q ss_pred             HHHHHHHHhC--CCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCCh---------
Q 007805           88 ELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------  144 (589)
Q Consensus        88 ~~~~~~l~~~--~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~~---------  144 (589)
                      .+. +.+..+  +|||||+++|.|.|+|+.|+++||++++++++.|+..-+.            +|+-+..         
T Consensus        62 ~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~  140 (214)
T cd07022          62 ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVD  140 (214)
T ss_pred             HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccC
Confidence            112 334444  5999999999999999999999999999999987654332            2221110         


Q ss_pred             h-----hh----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHH
Q 007805          145 G-----GT----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (589)
Q Consensus       145 g-----~~----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~  191 (589)
                      +     .+    ..+                 .|.+......+++  |+.+++++|++.||||++...+++..
T Consensus       141 ~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~  211 (214)
T cd07022         141 GNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA  211 (214)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence            0     00    000                 1222334444555  99999999999999999987776543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.47  E-value=1.9e-12  Score=130.76  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=121.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      |++|+|||+|.||++|+..|.++|    ++|++|+++++. .+....           .           ......+.+.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence            468999999999999999999998    789999987532 222110           0           0112233444


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-c
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  460 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~  460 (589)
                       +.++++|+||+|+|  ++...+++.++.++++++++|+|...+++++++...++. .+++..+|+.|..++..+..+ .
T Consensus        59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             56789999999998  666778999999888888889999999999999887753 489999999999888777666 5


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEE
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVV  485 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~  485 (589)
                      ++..+++..+.++.+++.+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            6678999999999999999998865

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.46  E-value=4.1e-13  Score=124.59  Aligned_cols=135  Identities=25%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G  107 (589)
                      +++.++++|.+.++.++.|+++++|+|..    .|.|+|+...                ..+. +.+..++||+|+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence            56688999999999999999999999975    4667765432                2344 5677889999999999


Q ss_pred             cccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhh-------------hhHh------hhcCHHHHHHHHHcCCC
Q 007805          108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRLP------RLVGLSKAIEMMLLSKS  168 (589)
Q Consensus       108 ~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~-------------~~l~------~~~G~~~a~~l~ltg~~  168 (589)
                      .|.++|+.|+++||.|++.+++.|++.....+.....+-.             ..+.      |.+......+++..|..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999988876653321000             1111      22244456788889999


Q ss_pred             CCHHHHHHcCCccee
Q 007805          169 ITSEEGWKLGLIDAV  183 (589)
Q Consensus       169 ~~a~~A~~~Glv~~v  183 (589)
                      ++++||+++||||++
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.45  E-value=2.3e-12  Score=137.29  Aligned_cols=197  Identities=14%  Similarity=0.141  Sum_probs=126.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      .++||+|||+|.||.++|..|+++||+|++||+++++++.....        +...+.+.++.            +++.+
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~   69 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRA   69 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceee
Confidence            46899999999999999999999999999999999988763210        11111111111            33444


Q ss_pred             cCCccCCCCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-------C---
Q 007805          379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-------Q---  438 (589)
Q Consensus       379 ~~~~~~~~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-------~---  438 (589)
                      +++   +++||+||.|||..        ........+.+.++++++++|+..|+..+  ...+...+..       |   
T Consensus        70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~  146 (415)
T PRK11064         70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQA  146 (415)
T ss_pred             ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence            443   45899999999974        35566677889999999988764433222  2222221110       0   


Q ss_pred             ---CcEEEecCCCCC--CCCCee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Cccccccc---
Q 007805          439 ---DRIIGAHFFSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRAF---  498 (589)
Q Consensus       439 ---~r~ig~h~~~p~--~~~~lv-------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----Gfi~nRi~---  498 (589)
                         ..|--.  ++|-  .-+..+       -++.|  .+++..+.++++++.++..++++.+..     .++.|-++   
T Consensus       147 g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~  222 (415)
T PRK11064        147 GEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVN  222 (415)
T ss_pred             cCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHH
Confidence               011011  2231  111111       34544  478999999999999998877775411     23445543   


Q ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          499 FPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       499 ~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+++||+..+.+. |+++.++=.++
T Consensus       223 ia~~nE~~~lae~~GiD~~~v~~~~  247 (415)
T PRK11064        223 IAFANELSLICADQGINVWELIRLA  247 (415)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            5678999988877 99999886666

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.45  E-value=3.9e-13  Score=148.20  Aligned_cols=175  Identities=21%  Similarity=0.218  Sum_probs=133.7

Q ss_pred             cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 007805           12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (589)
Q Consensus        12 ~~~v~~i~l~~p--~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (589)
                      ++.|++|+++.+  + .|..+....+.+.+.++.+..|++||+|||+-..+    |++....             ....+
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp----GGs~~as-------------e~i~~  369 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP----GGSVFAS-------------EIIRR  369 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC----CCCHHHH-------------HHHHH
Confidence            578999999987  2 35455555678889999999999999999985421    2221110             01112


Q ss_pred             HHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE------eccc------cccCCCCChhhhhhHhh----
Q 007805           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR----  152 (589)
Q Consensus        89 ~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~------~~pe------~~~Gl~p~~g~~~~l~~----  152 (589)
                      .+ ..++..+||||+.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.|+...+..+..    
T Consensus       370 ~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~  448 (584)
T TIGR00705       370 EL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL  448 (584)
T ss_pred             HH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence            33 3466788999999999999999999999999999999876      5553      58999988777665554    


Q ss_pred             ------------------------hcCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc
Q 007805          153 ------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (589)
Q Consensus       153 ------------------------~~G~~~-----a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (589)
                                              .++..+     +.+.+.+|+.+++++|+++||||++-   .+ ++|.+.|.+++..
T Consensus       449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~  524 (584)
T TIGR00705       449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC  524 (584)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence                                    666666     78899999999999999999999994   33 7788888888887


Q ss_pred             -Chhhh
Q 007805          204 -RKPWI  208 (589)
Q Consensus       204 -~~~~~  208 (589)
                       ++..+
T Consensus       525 ~~~~~v  530 (584)
T TIGR00705       525 REQWSV  530 (584)
T ss_pred             CCCceE
Confidence             44433

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.45  E-value=1e-12  Score=134.41  Aligned_cols=184  Identities=16%  Similarity=0.065  Sum_probs=121.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~--  386 (589)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|             .....+. +.++  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence            799999999999999999999999999999998776531           112             1223333 3333  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                       ++|+||.|+|.+.. .++++.++.+.++++.+|++.+++.+.  .++.+.+. +..+|+-..-...+   ..+ ..-++
T Consensus        58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g-~~~~~  135 (299)
T PRK12490         58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG-YCLMV  135 (299)
T ss_pred             CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC-CeEEe
Confidence             37999999996644 455667888888888888765444332  23333332 22233332222111   111 12344


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCC------cccccccHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG------FAVNRAFFP---YSQSARLLVSL-G--VDVFRIDSAIR  523 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~G------fi~nRi~~~---~~~Ea~~l~~~-G--v~~~~iD~~~~  523 (589)
                      .|   +++++++++++++.+|.   +++++++ +|      .+.|-+...   .+.||+.+.++ |  ++++++=.+|.
T Consensus       136 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~  210 (299)
T PRK12490        136 GG---DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR  210 (299)
T ss_pred             cC---CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence            45   78999999999999997   7888876 34      222333332   33599999986 7  89988888873

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.44  E-value=9.9e-13  Score=134.67  Aligned_cols=182  Identities=16%  Similarity=0.133  Sum_probs=122.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~--  386 (589)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|             ....+++ +.++  
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~   57 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL   57 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence            799999999999999999999999999999998876642           122             1223333 2233  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Cee
Q 007805          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PLL  456 (589)
Q Consensus       387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~-------~lv  456 (589)
                       ++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+..  .+...+...    |.+|.+.|..+       .+.
T Consensus        58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~  132 (301)
T PRK09599         58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC  132 (301)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence             47999999996544 3456678888888888887665544432  233333211    33443322111       122


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCC-Cc----ccccccHHH---HHHHHHHHH---cCCCHHHHHHH
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCT-GF----AVNRAFFPY---SQSARLLVS---LGVDVFRIDSA  521 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~~-Gf----i~nRi~~~~---~~Ea~~l~~---~Gv~~~~iD~~  521 (589)
                      -++.|   ++++++.++++++.+++    +++++++.. |.    +.|-+.+..   +.|++.+.+   .|++++++-.+
T Consensus       133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        133 LMIGG---DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             EEecC---CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            23344   89999999999999999    788887632 22    223343332   359999987   47899999988


Q ss_pred             HH
Q 007805          522 IR  523 (589)
Q Consensus       522 ~~  523 (589)
                      |.
T Consensus       210 ~~  211 (301)
T PRK09599        210 WR  211 (301)
T ss_pred             Hh
Confidence            84

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.42  E-value=1.3e-12  Score=126.42  Aligned_cols=155  Identities=22%  Similarity=0.263  Sum_probs=109.3

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (589)
Q Consensus        15 v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (589)
                      |++|.++.+ ...  .+.++.+|.++++.++.|+++++|+|++    +|.|+|+....             ...+.+ +.
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-~~   61 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-RR   61 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-HH
Confidence            566666654 111  3789999999999999999999999988    47899886521             112344 56


Q ss_pred             HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCChhh---------------
Q 007805           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGG---------------  146 (589)
Q Consensus        94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~~g~---------------  146 (589)
                      +..++||+||+++|.|.|+|+.|+++||++++++++.|+..-+.            +|+-+..-.               
T Consensus        62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s  141 (208)
T cd07023          62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT  141 (208)
T ss_pred             HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence            78889999999999999999999999999999999988533221            333221110               


Q ss_pred             ---hhhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHH
Q 007805          147 ---TQRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL  190 (589)
Q Consensus       147 ---~~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~  190 (589)
                         ...+                 .|.+.... .+-++.|..+++++|++.||||++...++..
T Consensus       142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         142 EEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence               0001                 11111122 2335688999999999999999998666544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.42  E-value=1.7e-12  Score=138.70  Aligned_cols=203  Identities=19%  Similarity=0.142  Sum_probs=129.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH--hhcccccCCc-cCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDY-SEFK  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~-~~~~  386 (589)
                      ||+|||+|.||.++|..|+++||+|++||+++++++...+....    ..+. .+. +.....  .++++.++++ ++++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~----~~e~-~l~-~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP----IYEP-GLD-ELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCC----CCCC-CHH-HHHHHhhhcCCeEEECCHHHHHh
Confidence            79999999999999999999999999999999988764321000    0000 000 000000  1346667777 5689


Q ss_pred             CCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHh-cccCC-------CCcEEEecCC
Q 007805          387 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAHFF  447 (589)
Q Consensus       387 ~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~-~~~~~-------~~r~ig~h~~  447 (589)
                      +||+||+|||...        .....+...+.++++++++|+.. |++++.   ++. .....       ..-.+..+|-
T Consensus        76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe  154 (411)
T TIGR03026        76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFYLAYNPE  154 (411)
T ss_pred             hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCC
Confidence            9999999999764        24566678888888999887643 344332   232 11111       1112444442


Q ss_pred             CCCCCCCe-------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----Cccccccc---HHHHHHHHHHHHc
Q 007805          448 SPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRAF---FPYSQSARLLVSL  511 (589)
Q Consensus       448 ~p~~~~~l-------veiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-----Gfi~nRi~---~~~~~Ea~~l~~~  511 (589)
                      .. ..+..       ..++.|  .+++..+.++++++.++ +.++++.+..     .++.|-+.   .+++||+..+.+.
T Consensus       155 ~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~  231 (411)
T TIGR03026       155 FL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEA  231 (411)
T ss_pred             cC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 11111       024444  48999999999999998 5777775422     23334442   5678999999877


Q ss_pred             -CCCHHHHHHHH
Q 007805          512 -GVDVFRIDSAI  522 (589)
Q Consensus       512 -Gv~~~~iD~~~  522 (589)
                       |++++++-.++
T Consensus       232 ~GiD~~~v~~~~  243 (411)
T TIGR03026       232 LGIDVYEVIEAA  243 (411)
T ss_pred             hCCCHHHHHHHh
Confidence             99999988877

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.40  E-value=1.1e-12  Score=121.48  Aligned_cols=129  Identities=18%  Similarity=0.284  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCccc
Q 007805           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (589)
Q Consensus        31 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~  110 (589)
                      .+...+.+.|+.+..+..+ .+.|.+.|+      ++..                ...++ +.++.++||+|+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG------~~~~----------------~~~i~-~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGG------DVFA----------------GLAIY-NALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCC------CHHH----------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence            5677888889988877443 344454443      2211                12445 6688899999999999999


Q ss_pred             chhhHHhhhcCEEEEeCCceEeccccccCCCCChh---------------hhhhHhhhcC--HHHHHHHHHcCCCCCHHH
Q 007805          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE  173 (589)
Q Consensus       111 GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g---------------~~~~l~~~~G--~~~a~~l~ltg~~~~a~~  173 (589)
                      |+|+.++++||+|+++++++|+++....+..+...               ....+.+..|  .....+++.++..++++|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            99999999999999999999999877666544322               1233777888  677888888888999999


Q ss_pred             HHHcCCccee
Q 007805          174 GWKLGLIDAV  183 (589)
Q Consensus       174 A~~~Glv~~v  183 (589)
                      |+++||||+|
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.40  E-value=3.2e-12  Score=132.60  Aligned_cols=136  Identities=13%  Similarity=0.113  Sum_probs=104.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+ |.||+++|..|.+. |++|+++|++.+.                                   .++. +.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            58999999 99999999999964 8999999985210                                   1122 457


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHh---CCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC-----CCe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV-----MPL  455 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~-----~~l  455 (589)
                      ++||+||.|+|  +....++++++.++   ++++++|++.+|+-  +++.+   .....+|+|.||+..+..     ...
T Consensus        50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            89999999999  77788999999886   79999998877754  23333   233347999999887753     333


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      +.+++.  ..++.++.+.++++.+|.+++.+
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~  153 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYA  153 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEc
Confidence            445555  34556789999999999999988

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.39  E-value=1.3e-11  Score=127.44  Aligned_cols=178  Identities=16%  Similarity=0.087  Sum_probs=117.9

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccC
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE  397 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe  397 (589)
                      =|.+||..|+++||+|++||++++.++...      .+...+.|             ++.+++. +++++||+||+|+|.
T Consensus        31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~   91 (342)
T PRK12557         31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPF   91 (342)
T ss_pred             CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCC
Confidence            388999999999999999999988654311      01111222             3444455 668999999999996


Q ss_pred             ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH----HhcccCCCCcEEEecCCCCCCC----CCeeeEecCC------C
Q 007805          398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI----VGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------R  463 (589)
Q Consensus       398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~----~~~~~~~~~r~ig~h~~~p~~~----~~lveiv~~~------~  463 (589)
                      .. ..++++.++.+.++++++|++.+ +.+...    +...+..+.+.+|.|+++|...    ...++++.+.      .
T Consensus        92 ~~-~v~~Vl~~L~~~L~~g~IVId~S-T~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~  169 (342)
T PRK12557         92 GK-KTVEIAKNILPHLPENAVICNTC-TVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL  169 (342)
T ss_pred             cH-HHHHHHHHHHhhCCCCCEEEEec-CCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence            54 46677889999999999887544 444433    3344444445667777665532    1223455443      3


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCCcc---cccccHHH----HHHHHHHHHc-CCCHHH
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFR  517 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi---~nRi~~~~----~~Ea~~l~~~-Gv~~~~  517 (589)
                      .+++.+++++++++.+|+++++++...|..   .|.++.+.    ..|++.+.+. |.+|.+
T Consensus       170 ~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~  231 (342)
T PRK12557        170 ATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE  231 (342)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            389999999999999999998887533333   24444333    3478877766 566654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.38  E-value=6.3e-13  Score=150.58  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             CCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCch
Q 007805          488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS  561 (589)
Q Consensus       488 d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~  561 (589)
                      ..||||+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|+|.++++++.+++.+++++.|+
T Consensus       613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~  692 (708)
T PRK11154        613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC  692 (708)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence            57899999999999999999999997  999999999 9999997   99999999999999999999999999988899


Q ss_pred             HHHHHHHHcCCCCcccce
Q 007805          562 PLVDLLLKSGRNGNKGFS  579 (589)
Q Consensus       562 ~~l~~~v~~g~~G~~Gfy  579 (589)
                      ++|.+|+++|    ++||
T Consensus       693 ~~l~~~~~~~----~~f~  706 (708)
T PRK11154        693 ERLVEMAERG----ESFY  706 (708)
T ss_pred             HHHHHHHHcC----CCCC
Confidence            9999999999    8886

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.38  E-value=1.2e-11  Score=128.40  Aligned_cols=199  Identities=16%  Similarity=0.124  Sum_probs=125.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+.....  ... .+ .      .....+..+++. +.++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~------~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-I------KLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-C------cCCCCeEEeCCHHHHHh
Confidence            35899999999999999999999999999999998876643210000  000 00 0      000123445555 4678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-------HHhcccCC--CCcEEEecCCCC----CCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSS--QDRIIGAHFFSP----AHVM  453 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-------~~~~~~~~--~~r~ig~h~~~p----~~~~  453 (589)
                      +||+||+|+|.  .....++.++.+.+++++++++.++++...       .+......  +..++. -|..+    ....
T Consensus        71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~-~P~~~~~~~~g~~  147 (325)
T PRK00094         71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLS-GPSFAKEVARGLP  147 (325)
T ss_pred             CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEE-CccHHHHHHcCCC
Confidence            99999999995  457788899999999999888776555542       22222221  111111 11111    0111


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc---cHHHHHHHHHH
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLL  508 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi---~~~~~~Ea~~l  508 (589)
                      .++.+..   .+++.++.+.++++..|..+++..|..|                      +..|.+   ....++|++.+
T Consensus       148 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l  224 (325)
T PRK00094        148 TAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL  224 (325)
T ss_pred             cEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence            2222222   3788999999999999988877666544                      222333   23455699988


Q ss_pred             HHc-CCCHHHHHHHH
Q 007805          509 VSL-GVDVFRIDSAI  522 (589)
Q Consensus       509 ~~~-Gv~~~~iD~~~  522 (589)
                      .+. |++++.+..+.
T Consensus       225 a~~~G~d~~~~~~~~  239 (325)
T PRK00094        225 GVALGANPETFLGLA  239 (325)
T ss_pred             HHHhCCChhhhhccc
Confidence            866 99888776543

>PLN02858 fructose-bisphosphate aldolase

Probab=99.38  E-value=4.2e-12  Score=151.84  Aligned_cols=191  Identities=15%  Similarity=0.081  Sum_probs=133.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|||||+|.||.+||.+|+++||+|++||+++++.+...           +.|             ....+++ +.++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~   59 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAK   59 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHh
Confidence            36799999999999999999999999999999999877642           223             2233445 6778


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH---HHhcccC-CC--CcEEEecCCCCC---CCCCe
Q 007805          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQ--DRIIGAHFFSPA---HVMPL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~--~r~ig~h~~~p~---~~~~l  455 (589)
                      +||+||.|+|++..++..++  ..+.+.++++.+++..| ++.++   ++++.+. +.  .+|+-..-...+   ..+.+
T Consensus        60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~S-Ti~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L  138 (1378)
T PLN02858         60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRS-TILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKL  138 (1378)
T ss_pred             cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECC-CCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCe
Confidence            99999999998877776665  35777788888877544 44433   3333332 22  223333332222   34566


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-CCc---ccccccH----HHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RS  524 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~-~Gf---i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~-~~  524 (589)
                      +.++.|   +++++++++++++.+|+.++++ ++. .|.   ++|.++.    ..+.||+.+.+. |++++.+-.++ .+
T Consensus       139 ~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s  215 (1378)
T PLN02858        139 MIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNA  215 (1378)
T ss_pred             EEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            667777   8899999999999999998875 542 232   2344433    234599988876 99999988888 55


Q ss_pred             cC
Q 007805          525 FG  526 (589)
Q Consensus       525 ~g  526 (589)
                      .|
T Consensus       216 ~g  217 (1378)
T PLN02858        216 AG  217 (1378)
T ss_pred             Cc
Confidence            55

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.38  E-value=1.4e-11  Score=122.52  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=131.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC---e-EEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      ..||+|||+|.||.+++..++++|+   + |+++++ ++++++...+.                      . .+..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCCh
Confidence            4689999999999999999998873   3 777887 46665543211                      0 12233444


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-c
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  460 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~  460 (589)
                       +.++++|+||.|+|  ....+++++++.++++ +.+|+|.+.+++++.+...++...+++..||..+......+..+ .
T Consensus        61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             55789999999999  5556888888888776 56888999999999998888765678889998776555444333 4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccc------ccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAV------NRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~------nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ....+++..+.++.+++.+|..+.+- +..-...      +--+...+.+++  ..++.|++.++..+++
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~~-e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~  206 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLCT-EEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV  206 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEEC-HHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            56678999999999999999999753 2211111      111222333443  3445688888877665

>PRK07680 late competence protein ComER; Validated

Probab=99.37  E-value=1.3e-11  Score=124.58  Aligned_cols=151  Identities=13%  Similarity=0.068  Sum_probs=111.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +|+|||+|.||++|+..|.++|+    +|++||+++++.+...++                      ...+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence            69999999999999999999984    799999998876553210                      0012334444 55


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee-eEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTER  463 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv-eiv~~~~  463 (589)
                      ++++|+||+|+|  +....++++++.++++++++|++.+++++++.+...++  .+.+..+|..|......+ -++.+..
T Consensus        60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999997  55577888999988888889999999899888887665  356667775443221222 2345666


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      .+++..+.+.+++..+|. ++.+.
T Consensus       136 ~~~~~~~~~~~ll~~~G~-~~~i~  158 (273)
T PRK07680        136 CSEEDQQKLERLFSNIST-PLVIE  158 (273)
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEC
Confidence            788889999999999995 44443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.37  E-value=7.8e-13  Score=149.47  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             CCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCch
Q 007805          488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS  561 (589)
Q Consensus       488 d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~  561 (589)
                      ..+||++||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|+|.++++++.+++.+++++.|+
T Consensus       606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~  685 (699)
T TIGR02440       606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC  685 (699)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence            47899999999999999999999997  999999999 9999995   99999999999999999999999999887899


Q ss_pred             HHHHHHHHcCCCCcccce
Q 007805          562 PLVDLLLKSGRNGNKGFS  579 (589)
Q Consensus       562 ~~l~~~v~~g~~G~~Gfy  579 (589)
                      ++|.+|+++|    +.||
T Consensus       686 ~~L~~~~~~~----~~f~  699 (699)
T TIGR02440       686 QRLVAMAAEK----QSFY  699 (699)
T ss_pred             HHHHHHHHcC----CCcC
Confidence            9999999999    7786

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.37  E-value=1.2e-11  Score=125.77  Aligned_cols=183  Identities=14%  Similarity=0.083  Sum_probs=129.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||.++|..|...|++|++++++.++.....          .+.|             +... +. ++++.
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~-s~~eaa~~   73 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVL-TVAEAAKW   73 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeC-CHHHHHhc
Confidence            6899999999999999999999999999988755432210          1111             1222 33 67899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC-------CCCeeeE-
Q 007805          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEI-  458 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~-------~~~lvei-  458 (589)
                      ||+|+.++|...  ...++ +++.+.++++++| +.++++.+.......+...+++..+|..|.+       .+..+-. 
T Consensus        74 ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l  150 (330)
T PRK05479         74 ADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL  150 (330)
T ss_pred             CCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence            999999999444  36777 7799999999988 8888999888766655566789999999987       4444432 


Q ss_pred             e-cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-CCccccc-c----cHHHHHHHHHHH-HcCCCHHHH
Q 007805          459 V-RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFAVNR-A----FFPYSQSARLLV-SLGVDVFRI  518 (589)
Q Consensus       459 v-~~~~t~~e~~~~~~~l~~~lG~~~v-----~v~d-~-~Gfi~nR-i----~~~~~~Ea~~l~-~~Gv~~~~i  518 (589)
                      + .+...+.+..+.+..+++.+|..+.     ..++ . .-...-+ +    +..++..++..+ +.|++|+..
T Consensus       151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A  224 (330)
T PRK05479        151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA  224 (330)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            2 3555678999999999999998875     3322 1 1112112 1    234555677555 559988764

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.37  E-value=1.7e-12  Score=136.56  Aligned_cols=197  Identities=16%  Similarity=0.168  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      ||+|||+|.||.++|..++. ||+|++||+++++++...+......+..+++      .......+++.+++. +++++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence            79999999999999988875 9999999999999888654221111100100      000011345555555 667999


Q ss_pred             CEEEEeccCChH---------HHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCCCee
Q 007805          389 DMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (589)
Q Consensus       389 DlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~~lv  456 (589)
                      |+||+|||++.+         ...+++++|.. ++++.+++. .|++++.   ++...+.  +.  +..| +|....+.-
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~  147 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK  147 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence            999999998743         33456677776 577777653 3333332   3332221  11  1111 232211111


Q ss_pred             ---------eEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----CCccccccc---HHHHHHHHHHHHc-CCCH
Q 007805          457 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRAF---FPYSQSARLLVSL-GVDV  515 (589)
Q Consensus       457 ---------eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d~-----~Gfi~nRi~---~~~~~Ea~~l~~~-Gv~~  515 (589)
                               -++.|.  +++..+.+.+++..  ++..+. ++.+.     ..++.|-++   .+++||+..+.+. |+++
T Consensus       148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~  225 (388)
T PRK15057        148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT  225 (388)
T ss_pred             ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence                     133332  34556777787754  554333 34332     234445553   5678999988877 9999


Q ss_pred             HHHHHHH
Q 007805          516 FRIDSAI  522 (589)
Q Consensus       516 ~~iD~~~  522 (589)
                      .++=.++
T Consensus       226 ~eV~~a~  232 (388)
T PRK15057        226 RQIIEGV  232 (388)
T ss_pred             HHHHHHh
Confidence            9887777

>PLN02712 arogenate dehydrogenase

Probab=99.37  E-value=1.6e-11  Score=137.34  Aligned_cols=153  Identities=11%  Similarity=0.041  Sum_probs=110.7

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ..++|+|||+|.||+++|..|.+.|++|++||++... +.+           .+.|             +...++. +.+
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~G-------------v~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLG-------------VSYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcC-------------CeEeCCHHHHH
Confidence            4578999999999999999999999999999998542 221           1112             1223444 334


Q ss_pred             C-CCCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCC-----ee
Q 007805          386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL  456 (589)
Q Consensus       386 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-----lv  456 (589)
                      . ++|+||.|+|  +.....++.++.. .++++++|++.+|+  .+...+....+...+|++.||+.++....     ..
T Consensus       423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 5899999999  5567788888765 57889999988776  55566666665555799999988876531     11


Q ss_pred             -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       457 -----eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                           -++.++....+.++.+.++++.+|.+++.+
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m  535 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM  535 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence                 122344445667778889999999999988

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.36  E-value=6.1e-12  Score=135.05  Aligned_cols=189  Identities=15%  Similarity=0.116  Sum_probs=125.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~  385 (589)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...+..        ..|.           .+....++    +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence            489999999999999999999999999999999887653210        0010           01122222    234


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH--hccc-CCCCcEEEecCCCCC---CCCCeeeEe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKT-SSQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~-~~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                      +.+|+||.+||.... ..+++.++.++++++.||++.+++.+.+..  ...+ .+..+|++++....+   ..++ . ++
T Consensus        62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~-im  138 (467)
T TIGR00873        62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-S-IM  138 (467)
T ss_pred             CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-c-CC
Confidence            679999999996544 456778899999999999877765544422  2222 223345554443222   1222 1 22


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-CCc----ccccccHHH---HHHHHHHHH--cCCCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~--~Gv~~~~iD~~~  522 (589)
                      .|  .++++++.++++++.++.++      .++++. .|.    +-|-+.+.+   +.|++.++.  .|++++++-.++
T Consensus       139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~  215 (467)
T TIGR00873       139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF  215 (467)
T ss_pred             CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            22  38999999999999999874      567652 232    335555444   359999874  589999887777

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.36  E-value=1e-11  Score=119.83  Aligned_cols=154  Identities=25%  Similarity=0.303  Sum_probs=107.4

Q ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 007805           15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (589)
Q Consensus        15 v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (589)
                      |++|+++.+    ++ ....+|.++|+.+.+|+++++|||+..    |.|+++...                .++. +.|
T Consensus         2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i   55 (207)
T TIGR00706         2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL   55 (207)
T ss_pred             EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence            566666544    21 335789999999999999999999874    777776532                2333 556


Q ss_pred             HhCC--CcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCC------------h--hh
Q 007805           95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG------------F--GG  146 (589)
Q Consensus        95 ~~~~--kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~------------~--g~  146 (589)
                      ..++  ||+||.++|.|.|+|+.|+++||.+++++++.++..-+.            +|+-+.            .  ..
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~  135 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL  135 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence            6676  999999999999999999999999999999887653332            333210            0  00


Q ss_pred             h----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHH
Q 007805          147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (589)
Q Consensus       147 ~----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~  195 (589)
                      +    ..+                 .|.+...... -++.|+.+++++|++.||||++...+++.+...+
T Consensus       136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            0    011                 1222323233 3468899999999999999999887776655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.36  E-value=1.9e-11  Score=122.51  Aligned_cols=179  Identities=11%  Similarity=0.093  Sum_probs=124.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      +|+|||+|+||.+|+..|.+.|++   |.+|++++++.+...+.                      .......++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence            799999999999999999998864   57999998876653221                      0112233444 557


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      +++|+||+|+|  ++...+++.++.  +.++.+++|...+++++.+........+.+..||..|......+..+..   +
T Consensus        60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~  132 (258)
T PRK06476         60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P  132 (258)
T ss_pred             HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C
Confidence            88999999998  555677777762  4677888888899999999888776667888999877765544444432   1


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcC--CCCc------ccccccHHHHHHHHHHH-HcCCCHHHHHHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGN--CTGF------AVNRAFFPYSQSARLLV-SLGVDVFRIDSAI  522 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d--~~Gf------i~nRi~~~~~~Ea~~l~-~~Gv~~~~iD~~~  522 (589)
                         .+.++++++.+|..+++..+  ..-+      .+|  ++.++.++.... +.|+++++.-+++
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~  193 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL  193 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               25789999999998875422  1111      112  122444555454 5599988877665

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.35  E-value=1.1e-11  Score=126.53  Aligned_cols=202  Identities=11%  Similarity=0.055  Sum_probs=138.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|+|||+|+||.++|..|..+|++|+++++. +++.+.+.           +.|             +...+..+++++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            67999999999999999999999998876554 33433321           112             222232366899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC-------CCee-eEe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLL-EIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~-------~~lv-eiv  459 (589)
                      ||+|+.++|++. ....+++++.+.++++. ++|...++++..+....+...+++...|..|.+.       +..+ -++
T Consensus        60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            999999999542 35566778988888886 5688899999988777766668999999999984       5555 343


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EE-cCCCCcc--cccccHHHHH---HHHHHHHcCCCHHHHHHHH-
Q 007805          460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VV-GNCTGFA--VNRAFFPYSQ---SARLLVSLGVDVFRIDSAI-  522 (589)
Q Consensus       460 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v-~d~~Gfi--~nRi~~~~~~---Ea~~l~~~Gv~~~~iD~~~-  522 (589)
                       .+...+.+..+.+..+++.+|..       ..  .+ .|.=+-+  +.=..-+++.   |++  ++.|++++..-... 
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~  215 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV  215 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence             66677899999999999999988       31  11 1111111  1111222332   555  78899888766654 


Q ss_pred             HhcCCCCcHHHHHHHhchH
Q 007805          523 RSFGLPIGPFQLLDLAGYG  541 (589)
Q Consensus       523 ~~~g~p~Gpf~~~D~~Gld  541 (589)
                      ..+   .|-..++-..|+.
T Consensus       216 ~~~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       216 HEL---KLIVDLIYEGGIT  231 (314)
T ss_pred             HHH---HHHHHHHHHhcHH
Confidence            322   4666666666664

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02858 fructose-bisphosphate aldolase

Probab=99.35  E-value=4.9e-11  Score=142.85  Aligned_cols=190  Identities=17%  Similarity=0.183  Sum_probs=130.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .+++|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|             ....++. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence            358899999999999999999999999999999998876642           222             1123344 668


Q ss_pred             CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV  452 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~--------~~  452 (589)
                      ++||+||.|||++.+++..++.  .+.+.++++.+++..|+ +++.   ++...+...  -.|.+|.+.|        ..
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~  455 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM  455 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence            8999999999977776655543  36667788888775443 3333   333333210  0144443332        33


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----cccccc----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      +.+..++.|   +++.+++++++++.+|++++++...+|-     ++|.++    ...+.|++.+.+. |++++.+-.++
T Consensus       456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            445556666   7889999999999999988876443442     334443    3345699988866 99999987777


Q ss_pred             -HhcC
Q 007805          523 -RSFG  526 (589)
Q Consensus       523 -~~~g  526 (589)
                       .+.|
T Consensus       533 ~~s~g  537 (1378)
T PLN02858        533 SNAGG  537 (1378)
T ss_pred             Hhhcc
Confidence             5544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.31  E-value=3.4e-11  Score=138.47  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=118.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .+++|+|||+|.||.++|..+.++|  ++|++||+++++++.+.           +.|...           ...++. +
T Consensus         2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~   59 (735)
T PRK14806          2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAE   59 (735)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHH
Confidence            3588999999999999999999998  48999999998866642           122110           122333 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC-CCCcEEEecCCCCCC---------
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFSPAH---------  451 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~~p~~---------  451 (589)
                      .++++|+||+|+|  +....++++++.++++++++|++.+|.  ...+.+...+. ...||++.||+..+.         
T Consensus        60 ~~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~  137 (735)
T PRK14806         60 AVSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA  137 (735)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence            5789999999999  556789999999999888887655443  22555655543 356899999975332         


Q ss_pred             ---CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       452 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                         ....+.+++...++++..+.+.++++.+|+.++++
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~  175 (735)
T PRK14806        138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM  175 (735)
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence               23455788888899999999999999999999888

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.31  E-value=3.2e-11  Score=128.51  Aligned_cols=196  Identities=16%  Similarity=0.094  Sum_probs=122.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-----CHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-----TQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~  383 (589)
                      +||+|||+|.||.++|..|++ ||+|++||+++++++...            .|..     ...+... .+++.++++.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~   72 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE   72 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence            579999999999999999887 699999999999988753            2221     0111111 24567777777


Q ss_pred             CCCCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHH-hcccCC------CCcEEEecC
Q 007805          384 EFKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDL--NIV-GEKTSS------QDRIIGAHF  446 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~-~~~~~~------~~r~ig~h~  446 (589)
                      .+++||+||.|||+..        .......+.|.++++++.+++..|+..+-  .++ ...+..      ...|.-.| 
T Consensus        73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~-  151 (425)
T PRK15182         73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY-  151 (425)
T ss_pred             HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEee-
Confidence            7899999999999652        22233346788899988877643332221  111 111111      11122221 


Q ss_pred             CCCCCCC---------CeeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCC-C----Cccccccc---HHHHHHHHHH
Q 007805          447 FSPAHVM---------PLLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNC-T----GFAVNRAF---FPYSQSARLL  508 (589)
Q Consensus       447 ~~p~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~-~----Gfi~nRi~---~~~~~Ea~~l  508 (589)
                       +|....         .+-.++.|  .+++..+.+.++++.+. ..++++.+. .    .++.|-+.   .+++||+..+
T Consensus       152 -~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l  228 (425)
T PRK15182        152 -SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII  228 (425)
T ss_pred             -CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111         11124555  35788899999999986 345555431 1    23334443   5678999988


Q ss_pred             HHc-CCCHHHHHHHH
Q 007805          509 VSL-GVDVFRIDSAI  522 (589)
Q Consensus       509 ~~~-Gv~~~~iD~~~  522 (589)
                      .++ |+++.++=.++
T Consensus       229 ae~~GiD~~~v~~a~  243 (425)
T PRK15182        229 FNRLNIDTEAVLRAA  243 (425)
T ss_pred             HHHhCcCHHHHHHHh
Confidence            877 99998887766

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.30  E-value=5.3e-11  Score=119.22  Aligned_cols=181  Identities=14%  Similarity=0.093  Sum_probs=129.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      +||+|||+|+||++|+..+.++|.    +++++|+++++..                              .....+. +
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~   53 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEE   53 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHH
Confidence            479999999999999999999873    4999998865310                              0112232 4


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE  462 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~~  462 (589)
                      .++++|+||+|+|  +....+++.++.++++++ +|+|..+++..+.+...++...+++...|..|........ ++++.
T Consensus        54 ~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~  130 (260)
T PTZ00431         54 LAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN  130 (260)
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence            5678999999998  777889999999888764 5678899999998888776555677888888876665554 45677


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC-CCCccc-c---cccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          463 RTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV-N---RAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi~-n---Ri~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      .++++..+.+..+++.+|....+-.+ ...+.+ .   --+..++.|++  ..+..|++.++.-++.
T Consensus       131 ~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~  197 (260)
T PTZ00431        131 NVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLV  197 (260)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            78899999999999999998876321 111111 0   11233444554  4556688777766655

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.30  E-value=1.2e-12  Score=130.66  Aligned_cols=171  Identities=16%  Similarity=0.112  Sum_probs=131.6

Q ss_pred             CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 007805           13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (589)
Q Consensus        13 ~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (589)
                      .+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..++.-..... .......+++++ 
T Consensus        65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii-  141 (380)
T KOG1683|consen   65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII-  141 (380)
T ss_pred             cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence            368888887 889999999999999999999999999999999876 6799999998876532211 111122345666 


Q ss_pred             HHHHhCCCcEEEEeCCcccchh--hHHhhhcCEEEEe--CCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCC
Q 007805           92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (589)
Q Consensus        92 ~~l~~~~kp~iaav~G~a~GgG--~~lala~D~~ia~--~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  167 (589)
                      ....+++.|+.+|+||.+--|+  +-++.+|+|++..  ..-..+..+..+++.-+..-.-.+...+|...+-.-+-.+.
T Consensus       142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~  221 (380)
T KOG1683|consen  142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV  221 (380)
T ss_pred             HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence            5688999999999999999998  8899999999988  44444677888774333333344555567666667777888


Q ss_pred             CCCHHHHHHcCCcceecCc
Q 007805          168 SITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~  186 (589)
                      -++..||++-|+++++.|.
T Consensus       222 gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  222 GFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             CccHHHHHhhccchhccch
Confidence            8899999999988887654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=1.8e-10  Score=116.42  Aligned_cols=198  Identities=20%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-----CHHH---HHHHhhcccccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-----TQDK---ANNALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~---~~~~~~~i~~~~  380 (589)
                      .+|+|||+|.+|.++|..++++|++|+++|+|+.+.+...            .|..     +.++   .....+++++++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln------------~G~~~i~e~~~~~~v~~~v~~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN------------RGESYIEEPDLDEVVKEAVESGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh------------CCcceeecCcHHHHHHHHHhcCCceEec
Confidence            7899999999999999999999999999999999988743            2221     1111   111225788999


Q ss_pred             CccCCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHh----cc---cCCCCcEEE
Q 007805          381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVG----EK---TSSQDRIIG  443 (589)
Q Consensus       381 ~~~~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~----~~---~~~~~r~ig  443 (589)
                      |.+.++.||++|+|||.        |+.......+.|.++++++.+++--|++.|-  +++.    +.   +..+..|.-
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            99999999999999997        5566677778899999999988744433332  2222    21   222223322


Q ss_pred             ecCCCCCCCCC---eee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Cccccc---ccHHHHHHHH
Q 007805          444 AHFFSPAHVMP---LLE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNR---AFFPYSQSAR  506 (589)
Q Consensus       444 ~h~~~p~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----Gfi~nR---i~~~~~~Ea~  506 (589)
                      .|  .|-+..|   +.|      ++.|  .+++..+.+..|++.+-+..+.+.+..     ...-|-   +-.+++||-.
T Consensus       158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla  233 (436)
T COG0677         158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA  233 (436)
T ss_pred             ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            22  2221111   122      3333  589999999999999877766654422     111122   2367889977


Q ss_pred             HHHHc-CCCHHH-HHHHH
Q 007805          507 LLVSL-GVDVFR-IDSAI  522 (589)
Q Consensus       507 ~l~~~-Gv~~~~-iD~~~  522 (589)
                      .++++ |++..+ |+.+-
T Consensus       234 li~~~~GIdvwevIeaAn  251 (436)
T COG0677         234 LICNAMGIDVWEVIEAAN  251 (436)
T ss_pred             HHHHHhCCcHHHHHHHhc
Confidence            66655 997755 55554

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.28  E-value=1e-11  Score=124.36  Aligned_cols=170  Identities=18%  Similarity=0.158  Sum_probs=115.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++||+|||+|.||+++|..|+++||+|++|.++++..++.....++  .+++. |..       ....+.+++|+ ++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N--~~yLp-~i~-------lp~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETREN--PKYLP-GIL-------LPPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcC--ccccC-Ccc-------CCcccccccCHHHHHh
Confidence            3689999999999999999999999999999999998885443111  11222 111       12467888898 7788


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH------HH-hcccCCCCcEEE-ecCCCCC---CCCCe
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IV-GEKTSSQDRIIG-AHFFSPA---HVMPL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~------~~-~~~~~~~~r~ig-~h~~~p~---~~~~l  455 (589)
                      +||+|+.+||  ....+++++++.+++++++++++.++++...      ++ .+.++.. ++.. .-|....   .-.|.
T Consensus        71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~-~~~vLSGPs~A~EVa~g~pt  147 (329)
T COG0240          71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN-PIAVLSGPSFAKEVAQGLPT  147 (329)
T ss_pred             cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC-eEEEEECccHHHHHhcCCCc
Confidence            8999999999  6678899999998999999999988876643      32 2223321 1111 1111100   11111


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf  492 (589)
                      ..++.  ..+++..+.++.++..=-.+++...|..|-
T Consensus       148 a~~va--s~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gv  182 (329)
T COG0240         148 AVVVA--SNDQEAAEKVQALFSSPYFRVYTSTDVIGV  182 (329)
T ss_pred             EEEEe--cCCHHHHHHHHHHhCCCcEEEEecCchhhh
Confidence            11222  247888888888888766677777777664

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.28  E-value=5.4e-13  Score=142.37  Aligned_cols=160  Identities=15%  Similarity=0.130  Sum_probs=120.3

Q ss_pred             eEEEEcCCCCcHHHHH--HH----HhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      ||+|||+|.||.+++.  .+    +.+|++|++||++++.++.....++..+.    ....        ..++..++|+ 
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~~--------~~~I~~ttD~~   69 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELGA--------PLKIEATTDRR   69 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcCC--------CeEEEEeCCHH
Confidence            7999999999998666  33    45588999999999998886655543332    1111        1467778887 


Q ss_pred             cCCCCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCC--CCcEEEecCCCCC
Q 007805          383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA  450 (589)
Q Consensus       383 ~~~~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~--~~r~ig~h~~~p~  450 (589)
                      +++++||+||++++          |++.+|..+++++.+.+++++++.+++|...+.+++..+..  | +.+.+||.||+
T Consensus        70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv  148 (423)
T cd05297          70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM  148 (423)
T ss_pred             HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence            78999999999998          45889999999999999999999999999899888877753  6 89999999999


Q ss_pred             CCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 007805          451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP  483 (589)
Q Consensus       451 ~~~-----~lveiv~~~~t~~e~~~~~~~l~~~lG~~~  483 (589)
                      ..+     +..+ ++.-++..........+.+.+|..+
T Consensus       149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence            665     3332 2222223335566667777788643

linked to 3D####ucture

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.27  E-value=4.3e-11  Score=119.63  Aligned_cols=140  Identities=17%  Similarity=0.137  Sum_probs=104.2

Q ss_pred             HHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChH
Q 007805          323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP  400 (589)
Q Consensus       323 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~  400 (589)
                      ||..|.++|  ++|++||++++.++.+           .+.|.++           ...++.+.++++|+||+|+|  +.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVP--VS   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence            688899998  7999999999988776           3344332           11222467899999999999  88


Q ss_pred             HHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCC------------CCCCeeeEecCCCCCH
Q 007805          401 LKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA  466 (589)
Q Consensus       401 ~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~------------~~~~lveiv~~~~t~~  466 (589)
                      ...++++++.++++++++|++.+|.  .++..+....+...+|++.||+..+            ..+..+.++|++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            8999999999999999999877764  3445566666656799999997666            2456778899999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE
Q 007805          467 QVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v  486 (589)
                      +.++.+.++++.+|.+++.+
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEM  156 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE-
T ss_pred             HHHHHHHHHHHHCCCEEEEc
Confidence            99999999999999999987

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=7.1e-11  Score=119.93  Aligned_cols=198  Identities=19%  Similarity=0.276  Sum_probs=135.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      +||+|||.|..|...+.+|+..||+|+.+|+++++++...+..    +..++++++++..+        +|+++|+|+ +
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence            5799999999999999999999999999999999998865432    33344444444322        579999999 6


Q ss_pred             CCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccC--CCCc-E-EEec---
Q 007805          384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGAH---  445 (589)
Q Consensus       384 ~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~--~~~r-~-ig~h---  445 (589)
                      +++++|++|+|||+        |......+.++|.++++..++|+ +-|++|+.   .+.....  .+.+ | +.+.   
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence            79999999999987        55567788889999998876654 45666653   2222111  1111 0 1222   


Q ss_pred             ---------CCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCC-----CCccccccc---HHHHHHHH
Q 007805          446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNC-----TGFAVNRAF---FPYSQSAR  506 (589)
Q Consensus       446 ---------~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~-----~Gfi~nRi~---~~~~~Ea~  506 (589)
                               |++|..+     |+.. . ++++.+.+.++++.+  ...|++..+.     -.+..|-++   .+++||-.
T Consensus       152 LREG~Av~D~~~PdRI-----ViG~-~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia  224 (414)
T COG1004         152 LREGSAVYDFLYPDRI-----VIGV-R-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA  224 (414)
T ss_pred             hcCcchhhhccCCCeE-----EEcc-C-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2455442     3433 2 334667777777665  4555555332     246677776   36889999


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 007805          507 LLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       507 ~l~~~-Gv~~~~iD~~~  522 (589)
                      .+++. |++.++|=..+
T Consensus       225 ~ice~~g~D~~~V~~gI  241 (414)
T COG1004         225 NICEKVGADVKQVAEGI  241 (414)
T ss_pred             HHHHHhCCCHHHHHHHc
Confidence            88877 99999887766

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.25  E-value=3.6e-11  Score=124.84  Aligned_cols=196  Identities=13%  Similarity=0.065  Sum_probs=118.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||++||..|+++|++|++|+++++..+.......+.  .... |.       ....++..++++ +.+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~~   74 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALAG   74 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHcC
Confidence            4899999999999999999999999999999988776643211000  0000 10       001124455566 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC-----HHHHhcccCC--CCcE-EEecCCCCCCC---CCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRI-IGAHFFSPAHV---MPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~~~~~~--~~r~-ig~h~~~p~~~---~~lv  456 (589)
                      +|+||+|+|++.  .+++    .+.+++++++++.++++.     ...+++.+..  ..++ +..-|..+...   .+..
T Consensus        75 aD~Vi~~v~~~~--~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~  148 (328)
T PRK14618         75 ADFAVVAVPSKA--LRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA  148 (328)
T ss_pred             CCEEEEECchHH--HHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence            999999999653  2333    355667777777766654     2333333321  0111 11122111111   0112


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc----------------------cccc---ccHHHHHHHHHHHHc
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNR---AFFPYSQSARLLVSL  511 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf----------------------i~nR---i~~~~~~Ea~~l~~~  511 (589)
                      .++.+  .+++.++.++++++..|.++.+..|.-|.                      ..|-   ++...++|++.+.+.
T Consensus       149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~  226 (328)
T PRK14618        149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVA  226 (328)
T ss_pred             EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence            22322  37888999999999999888765554441                      1122   234445699988866


Q ss_pred             -CCCHHHHHHHH
Q 007805          512 -GVDVFRIDSAI  522 (589)
Q Consensus       512 -Gv~~~~iD~~~  522 (589)
                       |++++.+-.+.
T Consensus       227 ~G~~~~~~~~~~  238 (328)
T PRK14618        227 LGAEEATFYGLS  238 (328)
T ss_pred             hCCCccchhcCc
Confidence             99888776654

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.24  E-value=5.4e-11  Score=116.10  Aligned_cols=146  Identities=22%  Similarity=0.241  Sum_probs=107.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .-+..++.+|.+.|+++..|++|++|||+..++.| ++.+++++.                +.+ +.++..+|||||.++
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~   86 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD   86 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence            34567899999999999999999999999988877 777766652                333 446678999999999


Q ss_pred             CcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCC---------hhhhh-----------hH----
Q 007805          107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQ-----------RL----  150 (589)
Q Consensus       107 G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~---------~g~~~-----------~l----  150 (589)
                      | |.+||+.|+++||.+++.+.+.|+..-+.            +|+-+.         .+..+           .+    
T Consensus        87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l  165 (222)
T cd07018          87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL  165 (222)
T ss_pred             C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence            8 88999999999999999999998875332            222111         01111           00    


Q ss_pred             -------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHH
Q 007805          151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV  192 (589)
Q Consensus       151 -------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~  192 (589)
                                   .|.+..... +-+..|+.+++++|++.||||++...+++.+.
T Consensus       166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                         111222222 33445999999999999999999988777654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.24  E-value=1.6e-10  Score=112.82  Aligned_cols=163  Identities=16%  Similarity=0.110  Sum_probs=109.1

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+||| +|.||+++|..|+++|++|++|++++++.+...+.....   ....| +.        ..+..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence            3799997 899999999999999999999999998876643321110   00011 00        01122333467889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-----------------HHHhcccCCCCcEEEecCCCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA  450 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----------------~~~~~~~~~~~r~ig~h~~~p~  450 (589)
                      +|+||.|+|  .....++++++.+.++. ++|+|.+.++..                 +.++..++...+++...++.+.
T Consensus        69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            999999998  66567888888777654 778887777665                 3344555433677777654333


Q ss_pred             CCC-------CeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 007805          451 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (589)
Q Consensus       451 ~~~-------~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d  488 (589)
                      ...       +....+.|  .++++.+.+.+|.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence            211       11123333  2677899999999999 999988764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.24  E-value=3.5e-10  Score=121.62  Aligned_cols=200  Identities=17%  Similarity=0.194  Sum_probs=128.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      ++||+|||+|.+|..+|..|+++|  ++|+++|+++++++...+..    +..+.+++.+         ..-.+++++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~---------~~~~~l~~t~~   71 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHH---------hhcCCEEEEcC
Confidence            468999999999999999999984  78999999999988753321    0011111111         01124788888


Q ss_pred             c-cCCCCCCEEEEeccCC-------------hHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhccc---------
Q 007805          382 Y-SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT---------  435 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~---------  435 (589)
                      + +++++||++|+|||..             +.......++|.++++++++|+. .|++++.   .+...+         
T Consensus        72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f  150 (473)
T PLN02353         72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF  150 (473)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence            7 5799999999999633             33667888889999999887653 2333322   222111         


Q ss_pred             ---CCCCcEEEec----CCCCCCCCCeeeEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCCCcccccc---
Q 007805          436 ---SSQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA---  497 (589)
Q Consensus       436 ---~~~~r~ig~h----~~~p~~~~~lveiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~-----d~~Gfi~nRi---  497 (589)
                         ..|+++.-..    +.+|+.+     |+.+..  +.+++.+.+.++++.+-+ .++.+.     |-..++.|-.   
T Consensus       151 ~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~  225 (473)
T PLN02353        151 QILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQ  225 (473)
T ss_pred             EEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHH
Confidence               1222221111    1333322     334432  236678999999998753 444442     3334555655   


Q ss_pred             cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          498 FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       498 ~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      -.+++||-..+.+. |+++.++-.++
T Consensus       226 ~Iaf~NEla~lce~~giD~~eV~~~~  251 (473)
T PLN02353        226 RISSVNAMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            36789998888877 99999988887

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.23  E-value=1.1e-10  Score=119.95  Aligned_cols=167  Identities=14%  Similarity=0.112  Sum_probs=109.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||++||..|+.+||+|++|++++.                                     +++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHhc
Confidence            5799999999999999999999999999999853                                     111 44678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCCCHHHHh-------cccCCCCcEEE-ecCCCCC----CCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVG-------EKTSSQDRIIG-AHFFSPA----HVMP  454 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~~~-------~~~~~~~r~ig-~h~~~p~----~~~~  454 (589)
                      +|+||.|+|.  ...+.++.++.++ +++++++++.++++.+....       .... ..+++. ..+..+.    ....
T Consensus        48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-~~~v~~i~gp~~a~ei~~~~~~  124 (308)
T PRK14619         48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFP-NHPVVVLSGPNLSKEIQQGLPA  124 (308)
T ss_pred             CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcC-CCceEEEECCCcHHHHhcCCCe
Confidence            9999999995  4577888888774 67888888877655543211       1111 112211 1111000    0001


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc---cHHHHHHHHHHH
Q 007805          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLLV  509 (589)
Q Consensus       455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi---~~~~~~Ea~~l~  509 (589)
                      .+-+..   .+++..+.++++++..|.++++..|..|                      +..|-.   +...+.|++.+.
T Consensus       125 ~~~~ag---~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~  201 (308)
T PRK14619        125 ATVVAS---RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVG  201 (308)
T ss_pred             EEEEEe---CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            111222   3788999999999999999987777555                      222333   233446999888


Q ss_pred             Hc-CCCHHHH
Q 007805          510 SL-GVDVFRI  518 (589)
Q Consensus       510 ~~-Gv~~~~i  518 (589)
                      +. |++++.+
T Consensus       202 ~~~G~~~~t~  211 (308)
T PRK14619        202 THLGAQTETF  211 (308)
T ss_pred             HHhCCCcccc
Confidence            76 8866554

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.22  E-value=4.2e-10  Score=117.57  Aligned_cols=168  Identities=11%  Similarity=0.074  Sum_probs=106.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CC---HHHHHHHhhcccccCCcc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~  383 (589)
                      ++||+|||+|.||+.+|..|+++|++|++||+++. .+...           +.|. +.   ..+......++..+++.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   69 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA   69 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence            46899999999999999999999999999998653 22211           1111 00   000000012344555667


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEecCCCCCCCCC-------e
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHVMP-------L  455 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h~~~p~~~~~-------l  455 (589)
                      .++++|+||+|++..  ...++++++.++++++++|++.++++.. +.+...++....+.+.+++......+       .
T Consensus        70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~  147 (341)
T PRK08229         70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS  147 (341)
T ss_pred             hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence            788999999999844  3568889999999999988888777764 44555554332333434421111010       0


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf  492 (589)
                      -.+.-+   +.+.++.+.++++..|..+.+.+|..+.
T Consensus       148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~  181 (341)
T PRK08229        148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAV  181 (341)
T ss_pred             CceEec---CCchHHHHHHHHHhcCCCceecchhHHH
Confidence            111212   1245688999999999999988886653

>PLN02712 arogenate dehydrogenase

Probab=99.21  E-value=2.9e-10  Score=127.42  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=106.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ..++|+|||+|.||+++|..|.+.|++|++||++... +.+           .+.|             +...++. +.+
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~G-------------v~~~~d~~e~~  105 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLG-------------VSFFLDPHDLC  105 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcC-------------CEEeCCHHHHh
Confidence            3468999999999999999999999999999998543 221           1111             2223444 323


Q ss_pred             -CCCCEEEEeccCChHHHHHHHHHHH-HhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCCC-----Cee
Q 007805          386 -KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLL  456 (589)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lv  456 (589)
                       .+||+||+|+|  +....+++.++. ++++++++|++.+|.-  +...+...++....|++.||+..+...     ...
T Consensus       106 ~~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~  183 (667)
T PLN02712        106 ERHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR  183 (667)
T ss_pred             hcCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc
Confidence             57999999999  566778888886 6788899988776543  234455555444579999997766521     111


Q ss_pred             eEec-----CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          457 EIVR-----TERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       457 eiv~-----~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      .+..     .+....+.++.+.++++.+|.+++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m  218 (667)
T PLN02712        184 FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM  218 (667)
T ss_pred             EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence            2222     22334566788889999999999988

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.18  E-value=4.5e-11  Score=135.57  Aligned_cols=84  Identities=17%  Similarity=0.251  Sum_probs=76.9

Q ss_pred             CcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHHH
Q 007805          491 GFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLV  564 (589)
Q Consensus       491 Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l  564 (589)
                      ..|+||++.+++|||++++++|+  +|+|||.++ .++|||+   |||+++|.+|+|+++++++.+. .+++++.|+++|
T Consensus       625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L  703 (715)
T PRK11730        625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGL  703 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHH
Confidence            35899999999999999999994  999999999 8999986   9999999999999999999865 578777799999


Q ss_pred             HHHHHcCCCCcccce
Q 007805          565 DLLLKSGRNGNKGFS  579 (589)
Q Consensus       565 ~~~v~~g~~G~~Gfy  579 (589)
                      ++|+++|    ++||
T Consensus       704 ~~~v~~~----~~f~  714 (715)
T PRK11730        704 REMAANG----ESYY  714 (715)
T ss_pred             HHHHHcC----CCCC
Confidence            9999998    7786

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.17  E-value=5.4e-11  Score=134.67  Aligned_cols=84  Identities=19%  Similarity=0.296  Sum_probs=77.1

Q ss_pred             CcccccccHHHHHHHHHHHHcC-C-CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHHH
Q 007805          491 GFAVNRAFFPYSQSARLLVSLG-V-DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLV  564 (589)
Q Consensus       491 Gfi~nRi~~~~~~Ea~~l~~~G-v-~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l  564 (589)
                      .-|+||++.+++||+++|+++| + +++|||.++ .|+|||+   |||+++|.+|+|.+.++++.+. .+++++.|+++|
T Consensus       625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l  703 (714)
T TIGR02437       625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKL  703 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHH
Confidence            3489999999999999999999 4 999999999 9999997   9999999999999999999655 788878899999


Q ss_pred             HHHHHcCCCCcccce
Q 007805          565 DLLLKSGRNGNKGFS  579 (589)
Q Consensus       565 ~~~v~~g~~G~~Gfy  579 (589)
                      ++|+++|    +.||
T Consensus       704 ~~~~~~g----~~f~  714 (714)
T TIGR02437       704 REMAKNG----QSFY  714 (714)
T ss_pred             HHHHHcC----CCCC
Confidence            9999998    6776

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.16  E-value=2.2e-11  Score=112.36  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      ||+|||+|.||.++|..++++|++|++|+++++.++...+.-.        .....+.  ......+.+++|+ +++++|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~--------n~~~~~~--~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ--------NPKYLPG--IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS--------ETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC--------CCCCCCC--cccCcccccccCHHHHhCcc
Confidence            7999999999999999999999999999999987776543211        0000000  0111356778888 678999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      |+||.+||  ....+++++++.+++++++++++.+.++
T Consensus        71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999  5557899999999999999999988887

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.13  E-value=5.5e-10  Score=104.81  Aligned_cols=154  Identities=18%  Similarity=0.163  Sum_probs=105.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      |++++|+|.|+||+++|.+|++.||+|++-.++ +++++.+.+.+                     ...++..++.++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence            578999999999999999999999999999655 44444432211                     12355666668899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC----------------HH-HHhcccCCCCcEEE-ecC--
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIG-AHF--  446 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~----------------~~-~~~~~~~~~~r~ig-~h~--  446 (589)
                      .||+||.+||  ......+++++.+.+. +.|+++.|-.+.                .+ .++..++.. +++. .|-  
T Consensus        60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~  135 (211)
T COG2085          60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP  135 (211)
T ss_pred             cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence            9999999999  7778899999998876 677776554321                11 223333333 3322 121  


Q ss_pred             ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       447 ----~~p~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                          -+-++. .+..-.+.+  .|.++.+.+.++.+.+|..++-++.
T Consensus       136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence                111111 233334444  4788999999999999999998764

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.10  E-value=9.9e-10  Score=102.75  Aligned_cols=145  Identities=25%  Similarity=0.350  Sum_probs=101.2

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        16 ~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      .+|.++.    .+++...+.+.++|+++.+++ ++.|++.=.    |.|+++..                ...++ +.|.
T Consensus         2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~   55 (178)
T cd07021           2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL   55 (178)
T ss_pred             EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence            3455543    367788889999999999876 677777422    12333221                22445 6788


Q ss_pred             hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhh--------hhh------HhhhcC--HHHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG--------TQR------LPRLVG--LSKA  159 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~--------~~~------l~~~~G--~~~a  159 (589)
                      .+++|+|+.|+|.|.++|+.++++||++++++++.|+.+..-    +..|+        +..      +.+.-|  ...+
T Consensus        56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a  131 (178)
T cd07021          56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA  131 (178)
T ss_pred             hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999999999999999999988554    32222        011      222223  3444


Q ss_pred             HHHHHcC-------------CCCCHHHHHHcCCcceecCc-hHHH
Q 007805          160 IEMMLLS-------------KSITSEEGWKLGLIDAVVTS-EELL  190 (589)
Q Consensus       160 ~~l~ltg-------------~~~~a~~A~~~Glv~~vv~~-~~l~  190 (589)
                      ..|+-..             -.++++||++.|++|.+.+. ++|+
T Consensus       132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            4555544             27999999999999999853 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.08  E-value=4.6e-10  Score=98.54  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      -.||+|||+|.+|..++..|.++||+|..+ .++++..+++...+                      ......+..+.++
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~   67 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR   67 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence            468999999999999999999999998754 78877766653211                      1122222226689


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHh--CCCCcEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~  446 (589)
                      ++|+||++||++.  ..++.++|...  ..++++++-.+...+.+-+............+||
T Consensus        68 ~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   68 DADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             C-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             cCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            9999999999875  77888999887  7889988766666666666555445556667775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.07  E-value=9.5e-10  Score=114.51  Aligned_cols=179  Identities=15%  Similarity=0.081  Sum_probs=115.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|.||+++|..|+++| +|++|.++++..+...+.-.+  ......+.       .....+..++|+ +++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a~   75 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEAA   75 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHHH
Confidence            4578999999999999999999999 799999999887665331100  00000010       011235567777 568


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-------HHHhcccCCCCcEEEecCCCCCCC--CCee
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRIIGAHFFSPAHV--MPLL  456 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-------~~~~~~~~~~~r~ig~h~~~p~~~--~~lv  456 (589)
                      +++|+||.|||  .....++++++.++++++++++|.+.++..       +.+.+.++.....+-..|..+...  ....
T Consensus        76 ~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t  153 (341)
T PRK12439         76 NCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAA  153 (341)
T ss_pred             hcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCe
Confidence            99999999999  666889999999999999888887777764       234444432111222223211110  1111


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccccccc
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  498 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~  498 (589)
                      .++-+. .+++..+.+.+++..-+.++....|..|...--.+
T Consensus       154 ~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~al  194 (341)
T PRK12439        154 AAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGAL  194 (341)
T ss_pred             EEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHH
Confidence            122221 26778899999999988888888888875443333

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.05  E-value=5.2e-10  Score=105.68  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--H----HHHHHH--hhcccccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--Q----DKANNA--LKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~----~~~~~~--~~~i~~~~  380 (589)
                      +||+|||+|.+|..+|..|+++||+|+++|+|+++++...            .|...  +    +-....  .+++.+++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~------------~g~~p~~E~~l~~ll~~~~~~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN------------NGELPIYEPGLDELLKENVSAGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH------------TTSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh------------hccccccccchhhhhccccccccchhhh
Confidence            5899999999999999999999999999999999888743            22211  1    111111  25778888


Q ss_pred             Cc-cCCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      +. +++++||++|+|||.        |.....+..++|.++++++.+|+- -|++++
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp  124 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP  124 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence            88 558999999999986        455677888999999999887753 444443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.05  E-value=2.2e-10  Score=96.38  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCC---CeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CCcc
Q 007805          310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS  383 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~  383 (589)
                      ||+|||+|.||.+|+..|.++|   ++|.++ +++++++++..++.                      . ....  +..+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~-~~~~~~~~~~   57 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------G-VQATADDNEE   57 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------T-TEEESEEHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------c-cccccCChHH
Confidence            7999999999999999999999   899955 99999988753311                      1 2222  2337


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      .++++|+||.|||  +....+++.++ +...++.+++|.+.
T Consensus        58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence            7889999999998  66788999999 77778888888764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.04  E-value=2.3e-09  Score=114.83  Aligned_cols=180  Identities=13%  Similarity=0.066  Sum_probs=119.0

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC---CCCCEEEEe
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF---KDVDMVIEA  394 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~---~~aDlVIea  394 (589)
                      ||.+||.+|+++||+|++|||++++.+...+.          .|. .        ..+....++ +.+   +.+|+||.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            99999999999999999999999988775321          010 0        113344455 333   358999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH--hcccC-CCCcEEEecCCCCC---CCCCeeeEecCCCCCHHH
Q 007805          395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTERTSAQV  468 (589)
Q Consensus       395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~~-~~~r~ig~h~~~p~---~~~~lveiv~~~~t~~e~  468 (589)
                      ||....+ .+++.++.+.+.++.||++.+++.+.+..  ...+. ...+|+++.-...+   ..++ .-++.|   ++++
T Consensus        62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~a  136 (459)
T PRK09287         62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKEA  136 (459)
T ss_pred             CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHHH
Confidence            9977655 45568899999999988876655444322  22222 22234443322211   2233 223444   7999


Q ss_pred             HHHHHHHHHHcCCee-------EEEcCC-CCc----ccccccHHH---HHHHHHHHHc--CCCHHHHHHHH
Q 007805          469 ILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVSL--GVDVFRIDSAI  522 (589)
Q Consensus       469 ~~~~~~l~~~lG~~~-------v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~~--Gv~~~~iD~~~  522 (589)
                      ++.++++++.++.++       .++++. .|.    +-|-|.+.+   +.|++.++++  |++++++-.++
T Consensus       137 ~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~  207 (459)
T PRK09287        137 YELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF  207 (459)
T ss_pred             HHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999999999999886       778753 232    335565443   4599999983  89999887776

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.04  E-value=4.6e-10  Score=115.33  Aligned_cols=125  Identities=20%  Similarity=0.324  Sum_probs=92.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||.++|..++..|+ +|+++|++++.++. . .    ++.....      .......++..++|++++++
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-~----ld~~~~~------~~~~~~~~I~~~~d~~~l~~   74 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-A----LDISHSN------VIAGSNSKVIGTNNYEDIAG   74 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-H----HHHHhhh------hccCCCeEEEECCCHHHhCC
Confidence            689999999999999999999996 99999999987532 1 0    1100100      00111135666788889999


Q ss_pred             CCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-cEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 007805          388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (589)
Q Consensus       388 aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h  445 (589)
                      ||+||++.                   +++..+++++.+++.+++++. .|++||.+.+....+....+.| .|++|++
T Consensus        75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            99999955                   667888999999999999764 4556888877777776666654 7888876

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.03  E-value=4.5e-10  Score=114.94  Aligned_cols=121  Identities=19%  Similarity=0.323  Sum_probs=86.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH-HHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT-IEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      |+|||+|.||.++|..++..|+ +|+++|++++.+ ++... +..    ...        ......+++.++|++++++|
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~dl~~----~~~--------~~~~~~~I~~t~d~~~l~dA   67 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKALDISQ----AAP--------ILGSDTKVTGTNDYEDIAGS   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHHHHHH----hhh--------hcCCCeEEEEcCCHHHhCCC
Confidence            6899999999999999998887 999999998754 32221 111    000        11111356666778889999


Q ss_pred             CEEEEec--------------cCChHHHHHHHHHHHHhCCCCcE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 007805          389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  444 (589)
Q Consensus       389 DlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~  444 (589)
                      |+||+++              +++..+++++++++.+++++..+ ++||.+.+....+...... +.|++|+
T Consensus        68 DiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          68 DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             CEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            9999966              67889999999999999977764 4577776666555555443 4567663

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.01  E-value=1.9e-08  Score=100.20  Aligned_cols=152  Identities=18%  Similarity=0.131  Sum_probs=97.2

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccC
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE  397 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe  397 (589)
                      =|.+||.+|+++||+|++||+++++.+....      ..+.+.|             ...+++. +++++||+||.|+|+
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd   91 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF   91 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence            3889999999999999999999876543100      1112223             2334444 778999999999995


Q ss_pred             ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcc----cCCCC---cEEEecCCCCCC-CCCeeeEecC------CC
Q 007805          398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TSSQD---RIIGAHFFSPAH-VMPLLEIVRT------ER  463 (589)
Q Consensus       398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~----~~~~~---r~ig~h~~~p~~-~~~lveiv~~------~~  463 (589)
                      ...+ .+++..+.+.++++++|++ +||+++..+...    +....   .+..+||-.-|- -..-.-++.+      .-
T Consensus        92 ~aaV-~eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~  169 (341)
T TIGR01724        92 GKGT-FSIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEM  169 (341)
T ss_pred             HHHH-HHHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccccc
Confidence            5544 4556778899999998865 455555543332    22222   344455532221 1111113322      23


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEE-cCCCC
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVV-GNCTG  491 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v-~d~~G  491 (589)
                      .++|.++++.++.+..|+.++++ .+..+
T Consensus       170 A~ee~i~~~~el~~~~~~~~~~~pa~l~~  198 (341)
T TIGR01724       170 ATEEQISKCVELAKSTGKKAYVVPADVTS  198 (341)
T ss_pred             CCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence            48999999999999999999998 34333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.00  E-value=1e-09  Score=113.30  Aligned_cols=170  Identities=15%  Similarity=0.035  Sum_probs=104.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCC--------CeEEEEeC-----ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805          310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  376 (589)
                      ||+|||+|.||+++|..++.+|        ++|++|.+     +++..+...+.        .+..+..+.  -.....+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~--------~~n~~ylpg--i~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTT--------HENVKYLPG--IKLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhc--------CCCccccCC--CcCCCCe
Confidence            6999999999999999999999        99999998     43333322111        110000000  0012456


Q ss_pred             cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--H-------HhcccCCCCcEEEecC
Q 007805          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--I-------VGEKTSSQDRIIGAHF  446 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~-------~~~~~~~~~r~ig~h~  446 (589)
                      ++++|+ +++++||+||.|||  ....+.+++++.++++++.+++|.++++..+  .       +.+.+..+--++. -|
T Consensus        71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~ls-GP  147 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLS-GA  147 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEee-Cc
Confidence            778888 67899999999999  6668899999999999999899988887654  1       1122211110011 11


Q ss_pred             CCCC--CCC-CeeeEecCCCCC--HHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805          447 FSPA--HVM-PLLEIVRTERTS--AQVILDLMTVGKIIKKVPVVVGNCTGF  492 (589)
Q Consensus       447 ~~p~--~~~-~lveiv~~~~t~--~e~~~~~~~l~~~lG~~~v~v~d~~Gf  492 (589)
                      ..+.  ... +...++.+...+  .+..+.+++++..=-.+++...|..|-
T Consensus       148 ~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~Gv  198 (342)
T TIGR03376       148 NLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGV  198 (342)
T ss_pred             chHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccc
Confidence            1000  011 111122222111  788888888888666666666777653

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.98  E-value=1.3e-09  Score=112.14  Aligned_cols=125  Identities=18%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      |+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+....   ..         .....+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~---------~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PV---------EGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hh---------cCCCcEEEeCCCHHHHC
Confidence            5799999999999999999999876 99999999887543211111110   00         00113566667788899


Q ss_pred             CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCcE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 007805          387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~  444 (589)
                      +||+||+++              .++..+++++++++.+++++..+ ++||.+.+....+...... +.|++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999986              35668899999999999866533 3455544333333222222 2455553

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.98  E-value=1.3e-09  Score=112.20  Aligned_cols=124  Identities=24%  Similarity=0.337  Sum_probs=90.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHH-HHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..++..| .+|+++|++++.++ +.. .+...    ..        ......+++.++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~   72 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF----ST--------LVGSNINILGTNNYEDIK   72 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhC
Confidence            48999999999999999999988 69999999987754 221 01100    00        000112455567888999


Q ss_pred             CCCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-cEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 007805          387 DVDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (589)
Q Consensus       387 ~aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h  445 (589)
                      +||+||+++  |+++            .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus        73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            999999999  7777            88999999999998776 4556887766666665555554 6888866

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.96  E-value=2.8e-09  Score=110.83  Aligned_cols=169  Identities=16%  Similarity=0.016  Sum_probs=106.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-------CeEEEEeCChHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  376 (589)
                      +||+|||+|.||+++|..++++|       ++|.+|.++++.     .+...+..++.  +++..-.        ....+
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~--~ylp~~~--------Lp~ni   81 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENV--KYLPGIK--------LPDNI   81 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCc--ccCCCCc--------CCCce
Confidence            67999999999999999999997       899999999862     22221110000  0111001        12567


Q ss_pred             cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHH--hCCCCcEEEecCCCCCHHH--------H-hcccCCCCcEEEe
Q 007805          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDLNI--------V-GEKTSSQDRIIGA  444 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~~~~--------~-~~~~~~~~r~ig~  444 (589)
                      .+++|+ +++++||+||.|||  +...+++++++.+  +++++++++|.++++..+.        + .+.++.+--++. 
T Consensus        82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-  158 (365)
T PTZ00345         82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-  158 (365)
T ss_pred             EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-
Confidence            778887 67899999999999  7778999999998  7888888888877765432        1 122221111111 


Q ss_pred             cCCCCC---CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805          445 HFFSPA---HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (589)
Q Consensus       445 h~~~p~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf  492 (589)
                      -|..+.   .-.+...++.+  .+++....+++++..=-.+++...|..|.
T Consensus       159 GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv  207 (365)
T PTZ00345        159 GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV  207 (365)
T ss_pred             CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence            111100   00111112222  37788888888888766777777777663

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.9e-08  Score=92.79  Aligned_cols=184  Identities=14%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  384 (589)
                      ++|+.||+|.||..|+.+|.+.||+|++||+|++..+.+..           .|             ++..+++    +.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence            46999999999999999999999999999999999887532           22             1222222    34


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-------Ceee
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-------PLLE  457 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~-------~lve  457 (589)
                      +...-.|-..||-- ++..+++.++.+.+.++-+|++...+.--+.+...-...+  .|+||++--..+       ...-
T Consensus        57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l  133 (300)
T COG1023          57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL  133 (300)
T ss_pred             cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence            55667888999832 2577899999999999999887655433333322111112  267775432211       1112


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCCccc----ccccHHH---HHHHHHHHHcC---CCHHHHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI  522 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d-~~Gfi~----nRi~~~~---~~Ea~~l~~~G---v~~~~iD~~~  522 (589)
                      ++.|   ++++++.+.++++.+.-   -..+++. ..|-.+    |-|=+.+   +.|.+.++++.   ++.+++-++|
T Consensus       134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW  209 (300)
T COG1023         134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW  209 (300)
T ss_pred             EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            4445   89999999999999765   3355643 445443    7775544   45899999885   3888888888

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=1e-08  Score=106.42  Aligned_cols=174  Identities=16%  Similarity=0.103  Sum_probs=104.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-CC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-KD  387 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~-~~  387 (589)
                      ||+|||+|.||+.+|..|+++|++|++|+++++.++...+...+     ..  .+..   ......+..+++. +.+ .+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-----~~--~~~~---~~~~~~i~~~~~~~~~~~~~   71 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-----LK--YLPT---CHLPDNISVKSAIDEVLSDN   71 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-----cc--cCCC---CcCCCCeEEeCCHHHHHhCC
Confidence            69999999999999999999999999999998876654321000     00  0000   0001234455565 444 58


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCCCCH-------HHHhcccCCCCcEEE-ecCCCC---CCCCCe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL-------NIVGEKTSSQDRIIG-AHFFSP---AHVMPL  455 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~~-------~~~~~~~~~~~r~ig-~h~~~p---~~~~~l  455 (589)
                      +|+||.|||  .....++++++.+ ++++++++++.++++..       +.+...++.. ++.. .-|...   ....+.
T Consensus        72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~~~Gp~~a~~~~~~~~~  148 (326)
T PRK14620         72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAILSGPSFAKEIAEKLPC  148 (326)
T ss_pred             CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEeecCCcHHHHHHcCCCc
Confidence            999999998  5567788999998 88888777766766633       2233333321 2111 111100   000110


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccccccc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  498 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~  498 (589)
                      .-.+.  ..+.+..+.+.+++..-+..+....|..|...-..+
T Consensus       149 ~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~  189 (326)
T PRK14620        149 SIVLA--GQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAAL  189 (326)
T ss_pred             EEEEe--cCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHH
Confidence            01112  235556667777777767777777888776544443

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.79  E-value=1e-07  Score=90.59  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=82.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ||+|||. |.||.-++..|.++|+.|+                                                 +++|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~~   32 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKKA   32 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECCC
Confidence            7999998 9999999999999999986                                                 1478


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-----CeeeEecCCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER  463 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lveiv~~~~  463 (589)
                      |+||+|+|  +....++++++.      .+|++.+|.-.  .+.+.   ..+|+|.||...|...     ..+.+ ..+.
T Consensus        33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~~   98 (197)
T PRK06444         33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-INDI   98 (197)
T ss_pred             CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECCC
Confidence            99999999  655667776654      25666666433  12221   3479999997665332     22333 4667


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEE
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      ++++.++.+.++++  |.+++.+
T Consensus        99 ~~~~~~~~~~~l~~--G~~~~~~  119 (197)
T PRK06444         99 SRDNYLNEINEMFR--GYHFVEM  119 (197)
T ss_pred             CCHHHHHHHHHHHc--CCEEEEe
Confidence            88999999999998  8888876

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.78  E-value=2e-07  Score=95.84  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=97.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +||+|||+|.||+.+|..|+++|++|++|++ ++..+...+           .|. +.....+. .-.....++. +..+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~-~~~~~~~~~~~~~~~   67 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDA-VVPGPVITDPEELTG   67 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeE-EecceeecCHHHccC
Confidence            3799999999999999999999999999999 666655321           110 00000000 0011123444 3458


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEE-EecC-----CCCCCCC---Cee
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHF-----FSPAHVM---PLL  456 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~i-g~h~-----~~p~~~~---~lv  456 (589)
                      ++|+||.|++..  ...++++++.+.++++++|++...++.. +.+...++. .+++ +..+     ..|-.+.   ..-
T Consensus        68 ~~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~  144 (305)
T PRK12921         68 PFDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR  144 (305)
T ss_pred             CCCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence            999999999843  3567788899888888888776667653 345444432 2333 2222     2221100   000


Q ss_pred             eEec-CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 007805          457 EIVR-TERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (589)
Q Consensus       457 eiv~-~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~  490 (589)
                      ..+. .+....+..+.+.+++...|..+....|..
T Consensus       145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~  179 (305)
T PRK12921        145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIR  179 (305)
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHH
Confidence            0111 122334566677788888887666656643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.76  E-value=5.9e-08  Score=99.63  Aligned_cols=113  Identities=18%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+.+|..|+++|++|++++++++..+...+. .  +.  +..|..        ...+..+++.+.++++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g--~~--~~~~~~--------~~~~~~~~~~~~~~~~   67 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-G--LR--LEDGEI--------TVPVLAADDPAELGPQ   67 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-C--Cc--ccCCce--------eecccCCCChhHcCCC
Confidence            379999999999999999999999999999988776654221 0  00  001110        0112234444445899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTS  436 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~  436 (589)
                      |+||.|++..  ....+++++.+.+.++++|++...++.. +.+...++
T Consensus        68 d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~  114 (304)
T PRK06522         68 DLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG  114 (304)
T ss_pred             CEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence            9999999843  3578889999999888877777667653 44444443

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.75  E-value=2.3e-07  Score=93.79  Aligned_cols=190  Identities=13%  Similarity=0.098  Sum_probs=129.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  383 (589)
                      ...||+||+|.||..+|..++++||.|.+|+|++++.+...+..        ..+           ..+..+.++    +
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~--------~~~-----------k~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER--------AKG-----------KNIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC--------ccC-----------CCccccCcHHHHHH
Confidence            45799999999999999999999999999999999988754321        111           133444444    3


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh---cccCCCCcEEEecC-------CCCCCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG---EKTSSQDRIIGAHF-------FSPAHVM  453 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~---~~~~~~~r~ig~h~-------~~p~~~~  453 (589)
                      .++.---|++.|--- ....+++++|.+++.++-||++...+.-.+++.   +.....-.|+|+--       .+.|.  
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--  140 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--  140 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence            456667777777432 223578899999999999999765443333322   22234456777664       22333  


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEE-cCCCCccc----cccc---HHHHHHHHHHHHcC--CCHHH
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVV-GNCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR  517 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~----~--v~v-~d~~Gfi~----nRi~---~~~~~Ea~~l~~~G--v~~~~  517 (589)
                          ++||  .++++.+.+.+++..+..+    |  .++ .+..|-.+    |-|=   +.++.|++.++.+|  ++.++
T Consensus       141 ----iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e  214 (473)
T COG0362         141 ----IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE  214 (473)
T ss_pred             ----cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                4454  4899999999999887542    2  233 56677655    6664   34678999999885  59999


Q ss_pred             HHHHHHhc
Q 007805          518 IDSAIRSF  525 (589)
Q Consensus       518 iD~~~~~~  525 (589)
                      |-.++..+
T Consensus       215 i~~vF~~W  222 (473)
T COG0362         215 IAEVFEEW  222 (473)
T ss_pred             HHHHHHHh
Confidence            98887444

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.75  E-value=2.2e-07  Score=92.16  Aligned_cols=166  Identities=15%  Similarity=0.089  Sum_probs=120.7

Q ss_pred             CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHH
Q 007805          332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (589)
Q Consensus       332 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~  410 (589)
                      ++|++++|++++++...++                      ++ +..+.+. +.+++||+||+||+  +....+++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            6899999998887653221                      11 2233444 55789999999998  667788899998


Q ss_pred             HhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcC-
Q 007805          411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN-  488 (589)
Q Consensus       411 ~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-  488 (589)
                      +.+.++.+|+|.+.+++++.+...++...+++..+|+.|......+..+ .++..+++..+.+..++..+|....+-.+ 
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~  144 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEAL  144 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence            8777788999999999999998888755679999999888776665544 67788899999999999999977755311 


Q ss_pred             CCCccc-ccc---cHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          489 CTGFAV-NRA---FFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       489 ~~Gfi~-nRi---~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ...+.+ .-.   ++.++.|++  ..+..|+++++..+++
T Consensus       145 ~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv  184 (245)
T TIGR00112       145 MDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA  184 (245)
T ss_pred             cchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            111111 111   233444554  5567799999888876

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.75  E-value=7.2e-07  Score=92.01  Aligned_cols=175  Identities=8%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ..+||+|||+|.||+.+|..|+++|++|+++.+++.  +..           .+.|. +....-+.........++.+..
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~   70 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSAEDM   70 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcchhhc
Confidence            446899999999999999999999999999999863  211           11110 0000000000112233444556


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEEEe-cC-----CCCCC---CC-C
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPAH---VM-P  454 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~-h~-----~~p~~---~~-~  454 (589)
                      ..+|+||.||+...  ..+++..+.+.+.++++|++...++... .+...++. ++++.. .+     ..|..   .. .
T Consensus        71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g  147 (313)
T PRK06249         71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYG  147 (313)
T ss_pred             CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCC
Confidence            78999999997432  3578888999998888888777777654 34444443 344332 22     22210   00 0


Q ss_pred             eeeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCCcccccc
Q 007805          455 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (589)
Q Consensus       455 lveiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi  497 (589)
                      -+.+-.....+     .+.++.+.++++..|..+.+..|....+..++
T Consensus       148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl  195 (313)
T PRK06249        148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKL  195 (313)
T ss_pred             cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHh
Confidence            11111111112     46677788889998988777777665444443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.67  E-value=6.2e-08  Score=100.07  Aligned_cols=100  Identities=15%  Similarity=0.039  Sum_probs=78.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++.....                            +....++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            479999999999999999999999999999987542110                            1123344 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (589)
                      ||+|++++|...+.+..+.+++.+.++++++++..+.+..+  ..+.+.+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            99999999999888888888888999999999877766444  34545543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.67  E-value=5.7e-08  Score=99.37  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=68.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||.++|..++..|+ +|+++|++++. .++...  ...    +.+.     ......+++.+++++.+++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a~--d~~----~~~~-----~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKAL--DMY----EASP-----VGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHHH--hhh----hhhh-----ccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 89999998664 332210  000    1110     0111246777888877999


Q ss_pred             CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ||+||.+++.              +..+.+++.+++.++. ++++|+.
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv  116 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVV  116 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            9999999972              4456667777788886 4555443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.66  E-value=6.9e-07  Score=82.79  Aligned_cols=142  Identities=25%  Similarity=0.291  Sum_probs=101.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .+++.+..-|.+.++.++++ .++.|+|.=.    |.|+++..                ...++ +.+...++||++.|+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~   66 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY   66 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence            36778888899999998865 5788887522    22333322                12444 667789999999999


Q ss_pred             ---CcccchhhHHhhhcCEEEEeCCceEeccccccCCCCC----h-h---hhhh------HhhhcC--HHHHHHHHHcCC
Q 007805          107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG----F-G---GTQR------LPRLVG--LSKAIEMMLLSK  167 (589)
Q Consensus       107 ---G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~----~-g---~~~~------l~~~~G--~~~a~~l~ltg~  167 (589)
                         |.|.++|.-++++||.+++.++++++....-.|.-+.    . .   -+..      +.+.-|  ...+..++....
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~  146 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL  146 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence               9999999999999999999999999988775332110    0 0   0111      122233  466778888889


Q ss_pred             CCCHHHHHHcCCcceecCc-hHHH
Q 007805          168 SITSEEGWKLGLIDAVVTS-EELL  190 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~-~~l~  190 (589)
                      .++++||+++|++|.+++. ++|+
T Consensus       147 ~lta~EA~~~G~iD~ia~~~~~ll  170 (172)
T cd07015         147 SLTPEEALKYGVIEVVARDINELL  170 (172)
T ss_pred             CcCHHHHHHcCCceeeeCCHHHHh
Confidence            9999999999999999854 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.57  E-value=1.5e-07  Score=94.58  Aligned_cols=97  Identities=29%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             EEEEcC-CCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       311 I~IIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      |+|||+ |.||.++|..++..|    .+|+++|+++++++.....++......             ...+++.++|+ ++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    799999999988777555544332211             11356677774 88


Q ss_pred             CCCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       385 ~~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +++||+||+              .+.++..+++++.+++.+++ |+++++.
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~  117 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIV  117 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            999999999              66677889999999999998 5555543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK10949 protease 4; Provisional

Probab=98.56  E-value=8.4e-07  Score=98.35  Aligned_cols=162  Identities=20%  Similarity=0.231  Sum_probs=105.2

Q ss_pred             cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805           12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (589)
Q Consensus        12 ~~~v~~i~l~~p----~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (589)
                      .+.|++|.++..    +  .+.++.   +.+.+.|+++..|++||+|||.-..+    |+....             .+.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~  384 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV  384 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence            467999998753    1  234444   56788899999999999999975432    221111             011


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccc------------ccCCCCChhhh------
Q 007805           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT------  147 (589)
Q Consensus        86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~------------~~Gl~p~~g~~------  147 (589)
                      ..+.+ ..++...||||+.+.|.|..||+-++.+||.++|.+.+..+..-+            ++|+-++.-.+      
T Consensus       385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            22333 345677899999999999999999999999999999775443222            23432211100      


Q ss_pred             -----------hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHH
Q 007805          148 -----------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (589)
Q Consensus       148 -----------~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~  195 (589)
                                 ..+                 .|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~  538 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE  538 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence                       000                 122222322 33568999999999999999999765554444333

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.56  E-value=1.3e-06  Score=83.30  Aligned_cols=144  Identities=17%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             cHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCCCCCCEEEEeccC
Q 007805          320 GSGIATAHILNNIYVVLKEVNSEYLLKG-IKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIE  397 (589)
Q Consensus       320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~aDlVIeavpe  397 (589)
                      |+.||..++.+||+|++.|.|.+-.+.. .+++       -.             ..+..++ |.++++.+++.|+-.|=
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~v-------ed-------------AGV~vv~dD~eaa~~~Ei~VLFTPF   92 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRV-------ED-------------AGVEVVSDDAEAAEHGEIHVLFTPF   92 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHH-------Hh-------------cCcEEecCchhhhhcceEEEEeccc
Confidence            7889999999999999999998766553 1211       11             2244444 44889999999999983


Q ss_pred             ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH----HHhcccCCCCcEEEecCCCCCCCCCe-----eeEecCCC-----
Q 007805          398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN----IVGEKTSSQDRIIGAHFFSPAHVMPL-----LEIVRTER-----  463 (589)
Q Consensus       398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~----~~~~~~~~~~r~ig~h~~~p~~~~~l-----veiv~~~~-----  463 (589)
                      -. ..-.+.++|.++++.+++|+ ||-+.++-    .+...+..+.+-+|...+.|.-+ |.     .-++.+..     
T Consensus        93 Gk-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgv-PGtp~h~~yviagr~t~g~e  169 (340)
T COG4007          93 GK-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGV-PGTPQHGHYVIAGRSTEGKE  169 (340)
T ss_pred             ch-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCC-CCCCCCceEEEeccCCCcee
Confidence            21 34477789999999999885 33333322    34445555555566655555421 11     11333333     


Q ss_pred             -CCHHHHHHHHHHHHHcCCeeEEE
Q 007805          464 -TSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       464 -t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                       .++|.++++.++.++.||.++++
T Consensus       170 lATeEQi~r~velaes~Gk~~yv~  193 (340)
T COG4007         170 LATEEQIERCVELAESTGKEVYVL  193 (340)
T ss_pred             eccHHHHHHHHHHHHhcCCceEec
Confidence             37899999999999999999987

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.55  E-value=5.8e-07  Score=83.14  Aligned_cols=132  Identities=18%  Similarity=0.190  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G  107 (589)
                      ++..+.+++.+.|..++.++..+.|+|.=.    |.|+++.                ....++ +.+...++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence            567889999999999998877777777422    2233321                122455 6788899999999999


Q ss_pred             cccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhh------------------hHhhhcC--HHHHHHHHHc
Q 007805          108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMMLL  165 (589)
Q Consensus       108 ~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~G--~~~a~~l~lt  165 (589)
                      .|.++|.-++++||  .|++.++++|.+....-+.   +|...                  .+.+.-|  .....+++-.
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~  144 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER  144 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence            99999999999999  6777777777654332121   11110                  1122223  4555667778


Q ss_pred             CCCCCHHHHHHcCCccee
Q 007805          166 SKSITSEEGWKLGLIDAV  183 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~v  183 (589)
                      +..++|+||+++||||++
T Consensus       145 ~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         145 DTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CccccHHHHHHcCCCCcC
Confidence            888899999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.46  E-value=1.2e-06  Score=83.86  Aligned_cols=135  Identities=20%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      ..++..+.+.+...+..++.++..+-|.+  .+.|      +|+.                ....++ +.|...+.|+++
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   94 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST   94 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence            45788999999999998886654444444  3333      3322                123455 667788899999


Q ss_pred             EeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhh------------------hhHhhhcC--HHHHHH
Q 007805          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE  161 (589)
Q Consensus       104 av~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~~~~G--~~~a~~  161 (589)
                      .+.|.|.+.|..++++++  .|++.+++++.+....-|.   +|-+                  ..+...-|  .....+
T Consensus        95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~  171 (200)
T PRK00277         95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK  171 (200)
T ss_pred             EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999743  4666555555544332111   1111                  11233333  355567


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCc
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ++-.+..++|+||+++||||+|+..
T Consensus       172 ~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        172 DTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HhhCCccccHHHHHHcCCccEEeec
Confidence            7778889999999999999999854

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.44  E-value=4.9e-07  Score=86.57  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=72.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC---hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--  382 (589)
                      .+|+|||+|.||+.+|..|++.|+ +++++|.+   ++.+.+-.      + ..-..|+.........+.++....+.  
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~------~-~~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ------Y-KASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc------C-ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            679999999999999999999999 79999999   65554310      0 00112222222233333333322222  


Q ss_pred             -----------cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 -----------~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                                 +.++++|+||+| .++++.|..++.++....+...+++.
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                       246789999999 68999999999999988877776653

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.42  E-value=1.3e-06  Score=90.43  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||+++.....            ...+             ... .++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence            78999999999999999999999999999998653211            0001             111 234 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+.
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~  255 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK  255 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence            99999999988877776667788889999988765554333  34545443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.41  E-value=5.8e-07  Score=81.09  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|+|||.|..|.+.|..|.++|++|++-.+..+ ..+++.           +.|             +...+-.|+++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence            6899999999999999999999999999998876 444442           222             333333378999


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEe
Q 007805          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILAT  421 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s  421 (589)
                      ||+|+..+|  -+.-.++| ++|.++++++.++.-
T Consensus        61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE
T ss_pred             CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe
Confidence            999999999  44456777 789999999998753

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.40  E-value=7.1e-07  Score=89.88  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||.++|..|...|++|++|++.....+.+.           ..|             .... ++ ++++.
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~   71 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT   71 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence            6899999999999999999999999999987543322221           111             1222 34 67899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEEecCCCCCC----------CCCe
Q 007805          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAHFFSPAH----------VMPL  455 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig~h~~~p~~----------~~~l  455 (589)
                      ||+|+.++|. .+. +.++ .++.+.++++++++- +-+..+.-- ...+ ....++-.-|-.|-+          -.|.
T Consensus        72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~f-~hgfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~  147 (335)
T PRK13403         72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLLF-SHGFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPA  147 (335)
T ss_pred             CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEEE-CCCcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCcee
Confidence            9999999996 444 4555 579999999997753 223322110 0011 111122222222211          1111


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCee---EEE--cC--CCCccccc-ccH----HHHHHHH-HHHHcCCCHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVP---VVV--GN--CTGFAVNR-AFF----PYSQSAR-LLVSLGVDVFR  517 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~---v~v--~d--~~Gfi~nR-i~~----~~~~Ea~-~l~~~Gv~~~~  517 (589)
                      +.-+. ...+-.+.+.+..+.+.+|..-   +-+  ++  ..-.+..+ +++    .++..++ -|++.|.+|+.
T Consensus       148 l~av~-qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~  221 (335)
T PRK13403        148 LVAVH-QDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI  221 (335)
T ss_pred             EEEEE-ECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            11221 1234557788889999999763   222  22  11223333 233    3344455 56678998874

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.37  E-value=2e-06  Score=77.61  Aligned_cols=101  Identities=24%  Similarity=0.312  Sum_probs=67.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +||+|||+ |..|.++|..+...+.  ++.++|++++.++.-...+.........             .......+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence            48999999 9999999999999875  8999999988665543333322211100             112223566899


Q ss_pred             CCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++||+||.+.  |.            +..+.+++..++.++. ++++++..|
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt  118 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT  118 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence            9999999887  32            2334556666778887 555555443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.33  E-value=4.3e-06  Score=85.73  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=74.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||..+|..+...|++|++||++++.....                          .......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999875431110                          000111233 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|...+.+.-+-++....++++++++..+-+  +.-+.+.+.+.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~  241 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD  241 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence            99999999998887777767788889999988755544  33345555554

>PRK07574 formate dehydrogenase; Provisional

Probab=98.31  E-value=1.1e-05  Score=84.64  Aligned_cols=138  Identities=11%  Similarity=-0.004  Sum_probs=89.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|+.||+++...+..           ...             .+....++ +.+++
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QEL-------------GLTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhc-------------CceecCCHHHHhhc
Confidence            689999999999999999999999999999986321110           000             12222345 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecC--CC------CCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHF--FS------PAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~--~~------p~~~~~lv  456 (589)
                      ||+|+.++|...+.+.-+=++....++++++++..+.+-.+  ..+.+.+.. .-+-.++--  ..      |.+..+.+
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv  328 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRN  328 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCe
Confidence            99999999988887665556788889999988765555333  345444432 222233321  12      22445667


Q ss_pred             eEecCCC-CCHHHHH
Q 007805          457 EIVRTER-TSAQVIL  470 (589)
Q Consensus       457 eiv~~~~-t~~e~~~  470 (589)
                      .++|+-. .+.+..+
T Consensus       329 ilTPHiag~T~e~~~  343 (385)
T PRK07574        329 GMTPHISGTTLSAQA  343 (385)
T ss_pred             EECCccccCcHHHHH
Confidence            7777532 3444443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.30  E-value=9.9e-07  Score=91.41  Aligned_cols=93  Identities=17%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||.++|..++ ..|.+|+.||+++.....                           ..+...+++ +.++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence            57999999999999999995 468899999988643211                           001223345 5679


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHH
Q 007805          387 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      +||+|+.++|.....+. ++ .+..+.++++++++..+.+..++
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd  242 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVD  242 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccC
Confidence            99999999997776543 33 45677899999887766665543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.30  E-value=7e-06  Score=83.65  Aligned_cols=135  Identities=10%  Similarity=0.036  Sum_probs=88.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||++...                 .+.            .....++ +.+++
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~------------~~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI------------SSIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc------------ccccCCHHHHHhh
Confidence            78999999999999999888789999999987321                 000            0001234 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCC-CcEEEecCC--CCC---CCCCeeeEe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFF--SPA---HVMPLLEIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~-~r~ig~h~~--~p~---~~~~lveiv  459 (589)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+-.  -..+.+.+... ....++--|  .|.   +..+.+.++
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            9999999998888766655667778999998875554433  34555555432 233333322  222   345677788


Q ss_pred             cC-C-CCCHHHHHHH
Q 007805          460 RT-E-RTSAQVILDL  472 (589)
Q Consensus       460 ~~-~-~t~~e~~~~~  472 (589)
                      |+ . .++++..+.+
T Consensus       254 PHi~g~~t~e~~~~~  268 (303)
T PRK06436        254 PHVAGGMSGEIMQPA  268 (303)
T ss_pred             CccccccCHHHHHHH
Confidence            87 3 3566554443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.27  E-value=2e-06  Score=85.73  Aligned_cols=176  Identities=18%  Similarity=0.139  Sum_probs=105.9

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHHhC--CC-----eEEEEeCChHHHHHHHHHHHHHHH------hhHhcCCCCHHHHHH
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVR------GLVTRGKLTQDKANN  371 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~  371 (589)
                      .+...||+|||+|+||++||..+..+  ++     +|.+|-...+.-.+ .+.+...+.      +++..-.+       
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg~~l-------   89 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPGIKL-------   89 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCCccC-------
Confidence            34457899999999999999988764  22     68888765544332 111111111      12222111       


Q ss_pred             HhhcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-----------HHhcccCCCC
Q 007805          372 ALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-----------IVGEKTSSQD  439 (589)
Q Consensus       372 ~~~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-----------~~~~~~~~~~  439 (589)
                       ..++.+++|+ +++++||++|-++|  .+....++++|..++++++..+|.++++...           .|...++-|-
T Consensus        90 -P~NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~  166 (372)
T KOG2711|consen   90 -PENVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPC  166 (372)
T ss_pred             -CCCeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCc
Confidence             2457788888 88999999999999  6778899999999999999999988876643           1222232222


Q ss_pred             cEEEe-cCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 007805          440 RIIGA-HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (589)
Q Consensus       440 r~ig~-h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G  491 (589)
                      .++.. ..-+-.......|-+-+...+.+.-..+..+++.-..+++++.|..|
T Consensus       167 ~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~  219 (372)
T KOG2711|consen  167 SVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG  219 (372)
T ss_pred             eeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence            21111 11111111122233322222333333577788877778888777665

>PLN03139 formate dehydrogenase; Provisional

Probab=98.26  E-value=1.7e-05  Score=83.24  Aligned_cols=138  Identities=14%  Similarity=0.075  Sum_probs=90.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||..+|..+...|.+|..||+++...+..           .+.             .+....++ +.+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KET-------------GAKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhc-------------CceecCCHHHHHhh
Confidence            689999999999999999999999999999875321111           000             12223355 66789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCC--C------CCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF--S------PAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~--~------p~~~~~lv  456 (589)
                      ||+|+.++|...+.+.-+-+++...++++++++..+-+-.+  +.+.+.+.. .-.-.++--|  .      |.+..+.+
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv  335 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH  335 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence            99999999988887776667788899999988765554333  345454432 2222333322  2      22455677


Q ss_pred             eEecCCC-CCHHHHH
Q 007805          457 EIVRTER-TSAQVIL  470 (589)
Q Consensus       457 eiv~~~~-t~~e~~~  470 (589)
                      .++|+-. ++.+..+
T Consensus       336 ilTPHiag~t~~~~~  350 (386)
T PLN03139        336 AMTPHISGTTIDAQL  350 (386)
T ss_pred             EEcccccccCHHHHH
Confidence            7777543 3444433

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.26  E-value=2.3e-06  Score=87.80  Aligned_cols=99  Identities=24%  Similarity=0.287  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..++..|  ++|+++|+++++++.....+.......   +.          .......+++.++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~----------~~~i~~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS----------PVKIKAGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC----------CeEEEcCCHHHhC
Confidence            48999999999999999999999  589999999988766544333221100   00          0011234557789


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +||+||.++..              +..+.+++..++.++.+ +++++.
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~viv  115 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLV  115 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence            99999998854              33345666677888776 555543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.25  E-value=4.1e-06  Score=85.97  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+-+|..|+++|++|++++++++.++...++  +.+ .....|...      .. ... ..+.+.....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl-~i~~~g~~~------~~-~~~-~~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGL-TLVEQGQAS------LY-AIP-AETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCe-EEeeCCcce------ee-ccC-CCCccccccc
Confidence            479999999999999999999999999999987776654221  000 000011000      00 011 1111334678


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS  436 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~  436 (589)
                      |+||.|+-  ..-..+.++.+.+++.++++|++.-.++... .+...++
T Consensus        72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~  118 (305)
T PRK05708         72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP  118 (305)
T ss_pred             CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence            99999993  3334577888999999999888777776654 4555544

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.24  E-value=1.5e-06  Score=79.69  Aligned_cols=117  Identities=13%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||.+++..+.+.| ++|+++|+++++.+...+.+...       . +          ... ..+. +.++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~~   80 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELLA   80 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhccc
Confidence            68999999999999999999986 79999999998876643322100       0 0          011 2233 4478


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEEecC
Q 007805          387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAHF  446 (589)
Q Consensus       387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig~h~  446 (589)
                      ++|+||.|+|.... .....+.  ...+++++++++.++....+.+.+... ...+++..|+
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~  140 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE  140 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence            99999999987653 1111111  123578888876655433223333322 2334555554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.24  E-value=6.3e-06  Score=77.04  Aligned_cols=135  Identities=21%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G  107 (589)
                      ++.....++...+..++.++..+.|+|.=.    |.|+|+..                ...++ +.|...+.|+++.+.|
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~----------------~~~i~-~~l~~~~~~v~t~~~g   76 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTA----------------GLAIY-DTMQYIKPPVSTICLG   76 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCCCEEEEEEe
Confidence            678889999999999998766566655311    22333221                22444 6677889999999999


Q ss_pred             cccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhh---------------hhhHhhhc--CHHHHHHHHHcCCC
Q 007805          108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG---------------TQRLPRLV--GLSKAIEMMLLSKS  168 (589)
Q Consensus       108 ~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~---------------~~~l~~~~--G~~~a~~l~ltg~~  168 (589)
                      .|.++|.-+++++|  .|++.++++|.+.+...+..-...-               ...+...-  ......+++..+..
T Consensus        77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~  156 (171)
T cd07017          77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY  156 (171)
T ss_pred             EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence            99999999999999  7999999999888766544221000               00112222  33455677778999


Q ss_pred             CCHHHHHHcCCccee
Q 007805          169 ITSEEGWKLGLIDAV  183 (589)
Q Consensus       169 ~~a~~A~~~Glv~~v  183 (589)
                      ++++||+++||||+|
T Consensus       157 lta~EA~e~GiiD~V  171 (171)
T cd07017         157 MSAEEAKEYGLIDKI  171 (171)
T ss_pred             ccHHHHHHcCCCccC
Confidence            999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.24  E-value=5.6e-06  Score=79.62  Aligned_cols=152  Identities=15%  Similarity=0.121  Sum_probs=115.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ++|++||+|.|-.+++..+...|.    ++..+-.+......-          +..            ++.-...++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence            369999999999999999999885    444444422221110          011            122233444577


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE-ecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTER  463 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-v~~~~  463 (589)
                      ++.+|++++++-  +.+...++.++......+.||+|...+..++.+...++.+.|++..+++.|..+.....+ ..+..
T Consensus        59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            889999999993  666777888877766777899999999999999998887889999999999988877774 46778


Q ss_pred             CCHHHHHHHHHHHHHcCCeeE
Q 007805          464 TSAQVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v  484 (589)
                      ...+..+.+.+++...|+..-
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~e  157 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCEE  157 (267)
T ss_pred             cchhhHHHHHHHHHhcCccee
Confidence            888888999999999996543

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.23  E-value=1.9e-05  Score=78.35  Aligned_cols=152  Identities=11%  Similarity=0.013  Sum_probs=105.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~~  385 (589)
                      -.+|||||.|.||.=+|..+.++|+.|+..||+.  -+.+.+++.                       ....+++ + +-
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg-----------------------~~~ft~lhdlce  106 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG-----------------------SAKFTLLHDLCE  106 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc-----------------------ccccccHHHHHh
Confidence            3689999999999999999999999999999986  222222111                       1122233 2 23


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC------C-CCe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------V-MPL  455 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~------~-~~l  455 (589)
                      +..|+|+.|+.  ......+++..-.. ++.+++++..+|.-  +.+.....++..-.++-.|++..|.      . .|+
T Consensus       107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence            67899999995  55555666665554 77889998877753  3445556677667789999976664      1 133


Q ss_pred             eeEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          456 LEIV---RTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       456 veiv---~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      |-+-   ......+|.++.+.+++...|...|.+
T Consensus       185 VydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            3221   122345899999999999999988876

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.22  E-value=8.5e-05  Score=76.04  Aligned_cols=217  Identities=14%  Similarity=0.067  Sum_probs=124.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|+|+|.||+-++..|+++|++|+++-|++. +++..+           .|..-.............+.+.+....+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence            4899999999999999999999988999988875 444322           2211000000000112223333667799


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH-HhcccCCCCcEEEecCCCCCCCCCeeeEec-------
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-------  460 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig~h~~~p~~~~~lveiv~-------  460 (589)
                      |+||.++-  .-...+.++.+.++++++++|++.--++...+ +....+....+.|+-+.......+......       
T Consensus        69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            99999994  44456888999999999998887777766554 444444332344444332222222211111       


Q ss_pred             C--CCCCHHHHHHHHHHHHHcCCeeEEEcCCC------------------------Cccc-c----cccHHHHHHHHHHH
Q 007805          461 T--ERTSAQVILDLMTVGKIIKKVPVVVGNCT------------------------GFAV-N----RAFFPYSQSARLLV  509 (589)
Q Consensus       461 ~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~~------------------------Gfi~-n----Ri~~~~~~Ea~~l~  509 (589)
                      +  ..-.++..+.+.+.++..|....+..|.-                        |.+. |    .++..++.|+....
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~  226 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA  226 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence            1  12233667777777777776665533321                        1111 1    23445556777666


Q ss_pred             Hc-CC--CHHHHHHHH-Hh--cCCCCcHHHHHHHhc
Q 007805          510 SL-GV--DVFRIDSAI-RS--FGLPIGPFQLLDLAG  539 (589)
Q Consensus       510 ~~-Gv--~~~~iD~~~-~~--~g~p~Gpf~~~D~~G  539 (589)
                      .. |+  +.+.+|.++ ..  ...++.|-=+.|...
T Consensus       227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~  262 (307)
T COG1893         227 RAEGVELPEEVVERVLAVIRATDAENYSSMLQDLEK  262 (307)
T ss_pred             HhccCCCCHHHHHHHHHHHHhcccccCchHHHHHHc
Confidence            44 75  666677766 22  222445555555544

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.20  E-value=1.6e-05  Score=81.70  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=104.7

Q ss_pred             cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        14 ~v~~i~l~~p-~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      .|++|.++.+ .  .+.+..-..+.+.+.++.+..|+++++|+|.=.    |.|+....             .....+.+
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l  122 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL  122 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence            5888888655 1  122223346677788889999999999999633    12222111             11122333


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC---------------
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG---------------  155 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G---------------  155 (589)
                       +++..-. ||++.|++.|..||..++++||.++|++.+..|---+..+. |....   +-...|               
T Consensus       123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~---l~~k~Gv~~~~~~ag~~k~~~  196 (317)
T COG0616         123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEE---LLEKLGVEKEVITAGEYKDIL  196 (317)
T ss_pred             -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHH---HHHhcCCceeeeecccccccc
Confidence             3344444 99999999999999999999999999999988765555442 32221   111111               


Q ss_pred             -----------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHH
Q 007805          156 -----------------------------------LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (589)
Q Consensus       156 -----------------------------------~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~  196 (589)
                                                         ......-+.+|+.+++++|++.||||++-..++....+...
T Consensus       197 ~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         197 SPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence                                               12224567799999999999999999998766554444443

>PRK15076 alpha-galactosidase; Provisional

Probab=98.19  E-value=6.5e-06  Score=88.10  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=55.6

Q ss_pred             cceEEEEcCCCCcHHHHH--HHH----hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      |.||+|||+|.||.+.+.  .++    ..|.+|+++|+++++++.+...++..+...   +         ...+++.++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence            368999999999966655  443    246799999999999887655544443322   1         0135777888


Q ss_pred             c-cCCCCCCEEEEecc
Q 007805          382 Y-SEFKDVDMVIEAVI  396 (589)
Q Consensus       382 ~-~~~~~aDlVIeavp  396 (589)
                      + +++++||+||+++-
T Consensus        69 ~~eal~dADfVv~ti~   84 (431)
T PRK15076         69 RREALQGADYVINAIQ   84 (431)
T ss_pred             HHHHhCCCCEEeEeee
Confidence            5 88999999999883

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.19  E-value=1.3e-05  Score=77.11  Aligned_cols=138  Identities=22%  Similarity=0.219  Sum_probs=98.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ..++..+..++...|..++..+..+.|.|.=.    |.|+++..                ...++ +.|..++.|+++.+
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~~I~-d~i~~~~~~v~t~~  100 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA----------------GDAIY-DTIQFIRPDVQTVC  100 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH----------------HHHHH-HHHHhcCCCcEEEE
Confidence            45889999999999999987654444444211    22333221                22455 67888899999999


Q ss_pred             CCcccchhhHHhhhcC--EEEEeCCceEecccccc-CCCCChhhh------------------hhHhhhcC--HHHHHHH
Q 007805          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLVG--LSKAIEM  162 (589)
Q Consensus       106 ~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~-Gl~p~~g~~------------------~~l~~~~G--~~~a~~l  162 (589)
                      .|.|.+.|.-++++||  .|++.++++|.+..... |-  ..|-.                  ..+.+.-|  .....++
T Consensus       101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~  178 (207)
T PRK12553        101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD  178 (207)
T ss_pred             EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999  59999999988876543 21  11211                  11223333  3556677


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      +-.+..++|+||+++||||+|++.
T Consensus       179 ~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        179 TDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HhcCccccHHHHHHcCCccEEcCc
Confidence            778999999999999999999854

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.18  E-value=5.8e-06  Score=84.76  Aligned_cols=98  Identities=23%  Similarity=0.296  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .||+|||+|.+|+++|..++..|.  ++.++|++++.++.....+..... +.            ....+..+.+++.++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~------------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FL------------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cC------------CCCEEEECCCHHHhC
Confidence            489999999999999999998876  799999998765543333322110 00            012455567888899


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      +||+||.+.-  .            +..+.+++.+++.++.+. .+++
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vi  117 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPN-AILL  117 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEE
Confidence            9999998652  2            222344555667777644 4444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.17  E-value=2.7e-05  Score=79.36  Aligned_cols=160  Identities=18%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        12 ~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      .+.|++|.++.+ ..+. ...+.+++...++.+..+   .+|||.-..    .|+.....             ......+
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l  147 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL  147 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence            357999999876 2211 123456666666555533   467776432    12222110             0011223


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh----------------------
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ----------------------  148 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~----------------------  148 (589)
                       .+++...||+++.+++.|..||+.++++||.++|.+.+.++..-+... .|......                      
T Consensus       148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf  225 (330)
T PRK11778        148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF  225 (330)
T ss_pred             -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence             457788999999999999999999999999999999987765444322 12221110                      


Q ss_pred             ---------hHhh-----------hc--CH-HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHH
Q 007805          149 ---------RLPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (589)
Q Consensus       149 ---------~l~~-----------~~--G~-~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~  194 (589)
                               .+..           .+  ++ ....+-+.+|+.+++++|++.||||++...+++...+.
T Consensus       226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~  294 (330)
T PRK11778        226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM  294 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence                     0000           11  11 11234567899999999999999999998777754433

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.13  E-value=1.3e-05  Score=88.20  Aligned_cols=130  Identities=14%  Similarity=0.013  Sum_probs=84.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|+.||+.... +.+           .+.|             +...+++ +.+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 111           0011             2223345 66789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecC--CC-----CCCCCCeee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHF--FS-----PAHVMPLLE  457 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~--~~-----p~~~~~lve  457 (589)
                      ||+|+.++|...+.+.-+=++..+.++++++++..+-+-.  -..+.+.+.. .-...++--  ..     |.+..+.+.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  273 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI  273 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence            9999999998777655444566778999998876555433  3455555442 222233332  22     234445666


Q ss_pred             EecCCC
Q 007805          458 IVRTER  463 (589)
Q Consensus       458 iv~~~~  463 (589)
                      ++|+-.
T Consensus       274 ~TPHia  279 (525)
T TIGR01327       274 ATPHLG  279 (525)
T ss_pred             ECCCcc
Confidence            777643

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.10  E-value=5.6e-06  Score=85.01  Aligned_cols=96  Identities=24%  Similarity=0.338  Sum_probs=65.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ||+|||+|.+|.++|..++..|  .+|.++|+++++.+.....+...       .....       .....+++++++++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-------~~~i~~~d~~~l~~   67 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-------PVRIYAGDYADCKG   67 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-------CeEEeeCCHHHhCC
Confidence            7999999999999999999999  58999999988765321111110       00000       01122456788999


Q ss_pred             CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEE
Q 007805          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  419 (589)
Q Consensus       388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii  419 (589)
                      ||+||.+++.              +..+.+++.++|.++.+.+.++
T Consensus        68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            9999999975              3334556667788877554444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.08  E-value=3.7e-05  Score=73.22  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+...+.+.|..++..+..+.|.|.=.    |.|+++..                ...++ +.|...+.||++.+.
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a----------------g~aI~-d~i~~~~~~V~t~v~   89 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA----------------GFAIF-NMIRFVKPKVFTIGV   89 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH----------------HHHHH-HHHHhCCCCEEEEEE
Confidence            4778899999999988876333344444211    22333321                22455 668889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHcCC
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK  167 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~ltg~  167 (589)
                      |.|.+.|.-++++||-  |++.++++|.+-...-++.....-.               ..+...-|  .....+++-...
T Consensus        90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~  169 (197)
T PRK14512         90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF  169 (197)
T ss_pred             eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence            9999999999999985  8999998886654432221111100               01122223  344556666778


Q ss_pred             CCCHHHHHHcCCcceecCc-hHHH
Q 007805          168 SITSEEGWKLGLIDAVVTS-EELL  190 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~-~~l~  190 (589)
                      .++|+||+++||||+|++. +++.
T Consensus       170 ~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        170 WLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             ccCHHHHHHcCCccEeecCcHHhH
Confidence            8999999999999999964 4443

>PLN02602 lactate dehydrogenase

Probab=98.07  E-value=1e-05  Score=84.03  Aligned_cols=96  Identities=25%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..++..|.  ++.++|++++.++...-.+..... +.  +          ...+....+++.++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~----------~~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P----------RTKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C----------CCEEEeCCCHHHhC
Confidence            599999999999999999998876  799999998776543333332110 00  0          01334445778899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCc
Q 007805          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHC  417 (589)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~  417 (589)
                      +||+||.+.-.              +..+.+++..++.+++++..
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i  149 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI  149 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            99999998521              22344455666777765543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.07  E-value=3.4e-05  Score=79.25  Aligned_cols=128  Identities=16%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|||||+|.+|+.+|..+...|++|++||+ .+...+..                          .......++ +.++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence            6899999999999999999999999999999 43322210                          112223445 5689


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCC-CcEEEecCC--------CCCCCCCe
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF--------SPAHVMPL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~-~r~ig~h~~--------~p~~~~~l  455 (589)
                      .||+|+..+|...+.+.=+=++....++++++++..+-+  +.-..+.+.+... -+-.++--|        .|.+..+.
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pn  276 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPN  276 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCC
Confidence            999999999988886555556677789999977543333  3334455554432 122233222        23345566


Q ss_pred             eeEecCC
Q 007805          456 LEIVRTE  462 (589)
Q Consensus       456 veiv~~~  462 (589)
                      |.++|+-
T Consensus       277 V~~TPHi  283 (324)
T COG0111         277 VILTPHI  283 (324)
T ss_pred             eEECCcc
Confidence            6777753

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.05  E-value=8.6e-06  Score=83.31  Aligned_cols=98  Identities=23%  Similarity=0.323  Sum_probs=68.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      |+|||+|.+|+++|..++..|  .+++++|+++++++.....+.......   .          ...+..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence            689999999999999999988  589999999988765444433322110   0          0133444567899999


Q ss_pred             CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       389 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      |+||.++..              +..+.+++..++.+++ |+++++..
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~  114 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV  114 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence            999998852              3334556667788888 55555433

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.04  E-value=7.8e-05  Score=71.07  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=97.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      ..++.++..++...+-.++.++..+-|.+  .+.|      +|+..                ...++ +.+...+.||..
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~T   93 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS----------------GLAIY-DTMQFVKPDVHT   93 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence            34899999999999999986544444443  3433      33211                23555 678899999999


Q ss_pred             EeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhh-h-----------------hhHhhhcC--HHHHHH
Q 007805          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-T-----------------QRLPRLVG--LSKAIE  161 (589)
Q Consensus       104 av~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~-~-----------------~~l~~~~G--~~~a~~  161 (589)
                      .+-|.|.+.|.-|++++|  -|++.++++|.+-...-|..  .|- +                 ..+...-|  .....+
T Consensus        94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~  171 (200)
T CHL00028         94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE  171 (200)
T ss_pred             EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999999  69999999998877654421  121 1                 11222223  344566


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCc
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ++-....++|+||+++||||+|+.+
T Consensus       172 ~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        172 DMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HhhcCccCCHHHHHHcCCCcEEeec
Confidence            7777888999999999999999854

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.03  E-value=2.6e-05  Score=85.92  Aligned_cols=129  Identities=14%  Similarity=0.086  Sum_probs=84.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||++... +..           ...|             +... ++ +.+++
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999986431 111           0111             1222 34 66799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecCC--C-----CCCCCCeee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF--S-----PAHVMPLLE  457 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~--~-----p~~~~~lve  457 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+-+-.  -..+.+.+.. .-.-.++.-|  .     |.+..+.+.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            9999999998777655554677888999998876555433  3345555432 2222333322  2     334446666


Q ss_pred             EecCCC
Q 007805          458 IVRTER  463 (589)
Q Consensus       458 iv~~~~  463 (589)
                      ++|+-.
T Consensus       275 lTPHia  280 (526)
T PRK13581        275 VTPHLG  280 (526)
T ss_pred             EcCccc
Confidence            777643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.03  E-value=2e-05  Score=71.91  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      |+|+|+|.||.-+|..|.+.|++|+++++++ .++...+           .|. +.....+..........+. +..+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPDGDETVQPPIVISAPSADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecccceecccccccCcchhccCCC
Confidence            7899999999999999999999999999998 6555211           110 0000000000000011111 245789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSS  437 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~  437 (589)
                      |+||.|+.  ..-..+++..+.+++.+++.|++.-.++... .+.+..+.
T Consensus        69 D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~  116 (151)
T PF02558_consen   69 DLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR  116 (151)
T ss_dssp             SEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred             cEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence            99999995  3334578888999999998887777777754 44444433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.03  E-value=3.1e-06  Score=79.70  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=71.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.+|..+|..+...|.+|+.||++........           .             ... ...++ +.++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~-~~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGV-EYVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTE-EESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccc-eeeehhhhcch
Confidence            7899999999999999999999999999999987644210           0             011 22344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+-  .-+.+.+.+.
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            999999999766554444456677899999887665553  3345555554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.02  E-value=2.9e-05  Score=78.67  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..|...|.+|+++++++++.+.+.           +.|. .         .+. ..++ +.+++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence            6899999999999999999999999999999987654431           1111 0         000 1122 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||.++|..+     +-++..+.+++++++++.+|
T Consensus       210 aDiVint~P~~i-----i~~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALV-----LTADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHH-----hCHHHHhcCCCCeEEEEeCc
Confidence            999999998432     11334455677877776555

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.01  E-value=9.3e-06  Score=76.79  Aligned_cols=136  Identities=18%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ++.++...+.+.|..++.++..+-  |.|.+.      |+|+..                ...++ +.|..++.|++..+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~~~~~~v~t~~   81 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIRSSKAPVTTVV   81 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHHHSSSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHHhcCCCeEEEE
Confidence            889999999999888853332222  223443      344322                23555 77889999999999


Q ss_pred             CCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhc--CHHHHHHHHHcC
Q 007805          106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLV--GLSKAIEMMLLS  166 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~--G~~~a~~l~ltg  166 (589)
                      .|.|.+.|.-++++||.  |++.+++.|.+-+...+......-.               ..+....  ......+++-..
T Consensus        82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~  161 (182)
T PF00574_consen   82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRD  161 (182)
T ss_dssp             EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSST
T ss_pred             eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCC
Confidence            99999999999999999  8999999999988865543211110               0112222  334445666667


Q ss_pred             CCCCHHHHHHcCCcceecCc
Q 007805          167 KSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       167 ~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ..++|+||+++||||+|+..
T Consensus       162 ~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  162 TWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             EEEEHHHHHHHTSSSEEESS
T ss_pred             ccccHHHHHHcCCCCEeccC
Confidence            77899999999999999753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PLN02928 oxidoreductase family protein

Probab=98.01  E-value=3.2e-05  Score=80.58  Aligned_cols=150  Identities=11%  Similarity=0.035  Sum_probs=88.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|.+|++||++........  ..      .....     ............++ +.+++
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~------~~~~~-----~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL------IPNGD-----VDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc------ccccc-----ccccccccCcccCHHHHHhh
Confidence            6899999999999999999999999999999743211100  00      00000     00000000012244 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCC-CcEEEecCC--------CCCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFF--------SPAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~-~r~ig~h~~--------~p~~~~~lv  456 (589)
                      ||+|+.++|-..+.+.-+-++....++++++|+..+-+-.  -+.+.+.+... -...++--|        +|.+..+.+
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv  306 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV  306 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence            9999999998877655555667788999998876655533  34455554422 222333332        222344666


Q ss_pred             eEecCCC-CCHHHHHH
Q 007805          457 EIVRTER-TSAQVILD  471 (589)
Q Consensus       457 eiv~~~~-t~~e~~~~  471 (589)
                      .++|+-. .+++..+.
T Consensus       307 iiTPHia~~t~~~~~~  322 (347)
T PLN02928        307 IITPHVAGVTEYSYRS  322 (347)
T ss_pred             EECCcCCCChHHHHHH
Confidence            6777543 24443333

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.00  E-value=0.00017  Score=71.26  Aligned_cols=138  Identities=16%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -.++++-.+...+.++.+++. .+-+|-|.=.++++. |.+-.+          .-..+...+.+ ..+...+.|+|++|
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~----------~G~~~~ia~~~-~~~s~~~VP~IsVI  143 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE----------RGQGEAIARNL-MEMSDLKVPIIAII  143 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            568899999999999888765 344555543333332 332110          01122233444 45678899999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.|.|||......||++++.+++.|+.      +.|.++.+..+...--...+.+.+    .+++.++.+.|+||+|+|
T Consensus       144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~  213 (256)
T PRK12319        144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP  213 (256)
T ss_pred             eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence            9999999888888999999999988763      224444333333221223333333    779999999999999996


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      +
T Consensus       214 e  214 (256)
T PRK12319        214 E  214 (256)
T ss_pred             C
Confidence            4

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.97  E-value=2.1e-05  Score=80.94  Aligned_cols=97  Identities=24%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.++|..++..|.  ++.++|++++.++.....++...... . .           -.+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence            589999999999999999999987  89999999887655433333221100 0 0           1222 45668899


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      +||+||.+.-  .            +..+.+++..++.++.+ +++++
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vi  119 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFL  119 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            9999998763  2            23344555666666665 44444

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.94  E-value=0.00012  Score=69.52  Aligned_cols=138  Identities=20%  Similarity=0.161  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+...+...|..++.++..+-|.+.=.    |.|+|+.                ....++ +.|...+.|+...+-
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~   92 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI   92 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence            3677888889999988886654444444211    2233332                123455 667778888888889


Q ss_pred             CcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHcCC
Q 007805          107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK  167 (589)
Q Consensus       107 G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~ltg~  167 (589)
                      |.|.+.|.-+++++|  .|++.++++|.+.+..-|......-.               ..+.+.-|  .....+++-.+.
T Consensus        93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~  172 (191)
T TIGR00493        93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF  172 (191)
T ss_pred             EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence            999999999998766  69999999998866543321111100               11233333  355667778889


Q ss_pred             CCCHHHHHHcCCcceecC
Q 007805          168 SITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~  185 (589)
                      .++|+||+++||||+|+.
T Consensus       173 ~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       173 FMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             cCcHHHHHHcCCccEEec
Confidence            999999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=2.1e-05  Score=79.15  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|+|||.| .||.+||..|.++|++|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            689999996 9999999999999999999987643221                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|++....+...+       +++++++++.+
T Consensus       203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence            999999998554433332       78999988765

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.90  E-value=3.1e-05  Score=79.53  Aligned_cols=107  Identities=22%  Similarity=0.226  Sum_probs=68.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      +||+|+|+ |..|..+|..++..|+  +|+++|+++  ++++.....+.   +.+...+.         ..++..+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence            48999998 9999999999999987  599999964  33332211111   11111110         01355566777


Q ss_pred             CCCCCCEEEEecc--CC-----h-------HHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          384 EFKDVDMVIEAVI--ES-----V-------PLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       384 ~~~~aDlVIeavp--e~-----~-------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      ++++||+||.|+.  .+     .       .+.+++...|.++++ +++++..++..++
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~  126 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV  126 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence            8999999999984  11     1       345566666777764 5666666665554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.90  E-value=0.00044  Score=69.94  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -.++++-.+...+.++.++.. .+-+|-|--++++++ |.+-.+.          .......+.+ ..+.....|+|++|
T Consensus       133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV  199 (322)
T CHL00198        133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI  199 (322)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            568899999999999988765 344555543334443 4322110          0112222333 44678999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.|.|||.-....||++++.+++.|+.      +.|.++++..+...   .+|.+ +...-.++|++.+++|+||+|+|
T Consensus       200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~---~~a~~-aA~~~~ita~dL~~~giiD~ii~  269 (322)
T CHL00198        200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDS---KKSLD-AAEALKITSEDLKVLGIIDEIIP  269 (322)
T ss_pred             eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcch---hhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence            9999888865444699999999998873      33555555444332   23322 34456899999999999999996

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.84  E-value=4.6e-05  Score=69.37  Aligned_cols=98  Identities=21%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +++.|+|.|..|.++|..|...|.+|+++|++|-++-+|.                        ++.....+-.++++.+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~------------------------~dGf~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA------------------------MDGFEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH------------------------HTT-EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh------------------------hcCcEecCHHHHHhhC
Confidence            6799999999999999999999999999999997655431                        1223333222778999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC---CCHHHHhcc
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK  434 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~~  434 (589)
                      |++|-++.....+..+-    .+.+++++|+++.++.   +.+..+...
T Consensus        80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence            99999886544333333    3458899999866653   444454443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.83  E-value=0.0001  Score=75.79  Aligned_cols=99  Identities=15%  Similarity=0.079  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.+|..+|..+...|.+|..||+.....+               .+             .. ..++ +.++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence            7899999999999999999888999999998632100               00             11 1234 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+.+.+.+.
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~  247 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD  247 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999987776555556677789999988755544  33345555554

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.82  E-value=0.00066  Score=68.69  Aligned_cols=137  Identities=15%  Similarity=0.099  Sum_probs=88.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -+++++-.+...+.++.++.- .+-+|-|-=++++++ |.+..+..          ..+...+.+ ..+....+|+|++|
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV  196 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV  196 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            578899999999999988764 344555543333332 43322110          112222333 45778899999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.|.|||......||++++.+++.|+.      +.|.++.+..+...--...+.+    -..+++.++++.|+||+|+|
T Consensus       197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~II~  266 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDSIIP  266 (316)
T ss_pred             ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeEecc
Confidence            9999777775555699999999988763      2344444433332211222222    26778999999999999996

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.81  E-value=0.00051  Score=67.12  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEE
Q 007805           23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (589)
Q Consensus        23 p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~i  102 (589)
                      |-.+.++.+..+++.++++....+..+ .++|..      .|+++..                ..++. +.+..++.|++
T Consensus        67 Pi~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~  122 (285)
T PF01972_consen   67 PIYRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVT  122 (285)
T ss_pred             ccceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEE
Confidence            334678999999999999998776655 334432      2333321                11333 66788999999


Q ss_pred             EEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChh
Q 007805          103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (589)
Q Consensus       103 aav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g  145 (589)
                      +.|+..|+.+|.-++|+||-+++++.+.+|.-+..+|-.|..+
T Consensus       123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s  165 (285)
T PF01972_consen  123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS  165 (285)
T ss_pred             EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence            9999999999999999999999999999999999999988644

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.80  E-value=0.00016  Score=74.64  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|||||.|.||..+|..+. ..|.+|..||+........            ..+             ... .++ +.++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence            78999999999999999987 6788999999864221100            000             112 244 5679


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      .||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+.+.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999988876655556677889999988754434  33345555554

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.80  E-value=0.00086  Score=69.55  Aligned_cols=138  Identities=16%  Similarity=0.099  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      .+++++-.+...+.++.++.. .+=+|-|-=+++++ .|.+-.+.          .......+.+ ..+....+|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            468899999999999988765 34445443333322 33332221          0112222334 45788999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.+.+||......||++++.+++.|+.      +-|.++++..+...--...|.+    .-.++|.++++.|+||+|+|
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~  336 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP  336 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence            9999666654445789999999987663      2355555555544333333444    33899999999999999996


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      +
T Consensus       337 E  337 (431)
T PLN03230        337 E  337 (431)
T ss_pred             C
Confidence            3

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.79  E-value=6.9e-05  Score=75.75  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..|...++  ++.++|++++..+--...+.....            ....-..+....++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence            489999999999999999987754  899999995543321111111100            000002233334478999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+|+++.  |.            +..+.+++-+++.++++ +.++...|
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt  118 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT  118 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence            999999987  54            33455566667777776 45444333

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.78  E-value=5.9e-05  Score=77.12  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ||+|||+|.+|+++|..++..|.  ++.++|++++.++.-...+...... ....          --.+. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~-~~~~----------~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL-TYST----------NTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc-CCCC----------CEEEE-ECCHHHhCC
Confidence            69999999999999999998886  8999999987654432222211100 0000          00222 456799999


Q ss_pred             CCEEEEec
Q 007805          388 VDMVIEAV  395 (589)
Q Consensus       388 aDlVIeav  395 (589)
                      ||+||.+.
T Consensus        69 aDivvita   76 (307)
T cd05290          69 ADIIVITA   76 (307)
T ss_pred             CCEEEECC
Confidence            99999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.77  E-value=0.00034  Score=67.43  Aligned_cols=138  Identities=15%  Similarity=0.150  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEE--EEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      ..++..+...+...|..++..+.-+-|.  |.+.|+...+                      ...++ +.+...+.||..
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t  117 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT  117 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence            3577888888888777776433222222  2343332111                      22455 678889999999


Q ss_pred             EeCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHH
Q 007805          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMML  164 (589)
Q Consensus       104 av~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~l  164 (589)
                      .+-|.|.+.|.-|++++|.  |++.+++++.+-...-|......-.               ..+.+.-|  .....+++-
T Consensus       118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~  197 (221)
T PRK14514        118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD  197 (221)
T ss_pred             EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            9999999999999999996  8999999988766543321111100               01222334  345556777


Q ss_pred             cCCCCCHHHHHHcCCcceecCc
Q 007805          165 LSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ....++|+||+++||||+|+..
T Consensus       198 rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        198 RDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             cCccCCHHHHHHcCCccEEeec
Confidence            7888999999999999999853

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.76  E-value=0.00036  Score=66.29  Aligned_cols=138  Identities=17%  Similarity=0.155  Sum_probs=95.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .++.++..++...|..++.++..+-|.+  -+.|      +|+..                ....+ +.+...+.||...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence            4899999999999999986543344443  3333      33221                22455 6788899999999


Q ss_pred             eCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHc
Q 007805          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL  165 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~lt  165 (589)
                      +-|.|.+.|.-|++++|-  |++.+++++.+-...-|..-...-.               ..+.+.-|  .....+++-.
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r  169 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR  169 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            999999999999999985  8888999887766543321100000               01222333  2445567777


Q ss_pred             CCCCCHHHHHHcCCcceecCch
Q 007805          166 SKSITSEEGWKLGLIDAVVTSE  187 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~~  187 (589)
                      ...++|+||+++||||+|++..
T Consensus       170 d~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        170 DFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             CcCCCHHHHHHcCCCcEEeccC
Confidence            7889999999999999998653

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.75  E-value=0.00014  Score=73.28  Aligned_cols=81  Identities=23%  Similarity=0.197  Sum_probs=54.9

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      |...||||||+|.||..++..+.+.  +++|. +||+++++.+...+.                      ++.....+++
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~   61 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPL   61 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCH
Confidence            3457899999999999999999863  78876 889998876543211                      0111223444


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHH
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~  410 (589)
                       +.+.++|+|++|+|.+.  ..++..+..
T Consensus        62 eell~~~D~Vvi~tp~~~--h~e~~~~aL   88 (271)
T PRK13302         62 DQLATHADIVVEAAPASV--LRAIVEPVL   88 (271)
T ss_pred             HHHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence             44678999999999554  344444433

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.73  E-value=0.0016  Score=66.03  Aligned_cols=138  Identities=18%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -+++++-.+...+.++.++.- .+-+|-|.=++++++ |.+-.+          .-..+.....+ ..+.....|+|++|
T Consensus       130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI  196 (319)
T PRK05724        130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV  196 (319)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            478899999999999888764 455565544444433 433221          00112222444 55789999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.|.|||.-....||++++.+++.|+       .+++-|.+..|-+-  ..++.+..- ...+++.++++.|+||+|+|
T Consensus       197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~  266 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP  266 (319)
T ss_pred             eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence            999988777555569999999988776       34333444444332  123333333 56689999999999999996


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      .
T Consensus       267 E  267 (319)
T PRK05724        267 E  267 (319)
T ss_pred             C
Confidence            3

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.72  E-value=0.00014  Score=73.06  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|||+|.||..++..+.+.  +++ +.++|+++++.+...+.          .             .....+++ +.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence            5899999999999999999876  455 55899998876653220          0             11233455 44


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEE
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  419 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii  419 (589)
                      +.++|+|++|+|  .....++..++.+. ..+.++
T Consensus        59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv   90 (265)
T PRK13304         59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII   90 (265)
T ss_pred             hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence            588999999998  44445555555442 344444

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.72  E-value=2.8e-05  Score=81.58  Aligned_cols=98  Identities=11%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||..+|..+...|++|.+||+.....+                +            ... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence            6899999999999999999999999999997533110                0            001 1234 55789


Q ss_pred             CCEEEEeccCChH---HHHHHH-HHHHHhCCCCcEEEecCCCCCH--HHHhccc
Q 007805          388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~  435 (589)
                      ||+|+.++|-..+   -...++ ++....++++++++..+-+-.+  ..+.+.+
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL  221 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL  221 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence            9999999996542   122333 4566778999988755544333  3454444

>PRK05442 malate dehydrogenase; Provisional

Probab=97.71  E-value=7.5e-05  Score=76.93  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  377 (589)
                      ..||+|||+ |.+|+++|..++..|.       ++.++|++++  +++.-.-.+.....              .......
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~   69 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV   69 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence            469999998 9999999999988764       7999999653  22221111111110              0001112


Q ss_pred             c-cCCccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          378 G-VLDYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       378 ~-~~~~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      . +.+++++++||+||.+.-  .            +..+.+++..+|.++.+++++++..|.
T Consensus        70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            2 355689999999998762  2            223455666778888877877765553

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.71  E-value=0.00022  Score=73.38  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.+|..+|..+...|.+|+.||+....  .            ...                ...++ +.++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~----------------~~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CRE----------------GYTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------ccc----------------ccCCHHHHHHh
Confidence            68999999999999999998889999999975321  0            000                01234 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+.+.+.+.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999987776555556677789999988755544  33445555554

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.70  E-value=0.0019  Score=71.27  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -++++.-++...+.++.++.. .+-+|-|-=++++++ |.+..+.          .......+.+ ..+....+|+|++|
T Consensus       221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~----------Gq~~aIArnl-~amasl~VP~ISVV  287 (762)
T PLN03229        221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNL-RTMFGLKVPIVSIV  287 (762)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH----------hHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            477888899999999888754 344455533333332 3322221          0112222334 45778999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      -|.|.|||......||++++.+++.|+.      +-|.++++..+...--...    +...-.++|++.+++|+||+|+|
T Consensus       288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~e----AAe~lkiTa~dL~~lGiiD~IIp  357 (762)
T PLN03229        288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPK----AAEKLRITAQELCRLQIADGIIP  357 (762)
T ss_pred             eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHH----HHHHcCCCHHHHHhCCCCeeecc
Confidence            9999888877777799999999987653      2355554444433222222    34456899999999999999997


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      .
T Consensus       358 E  358 (762)
T PLN03229        358 E  358 (762)
T ss_pred             C
Confidence            3

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.69  E-value=0.00014  Score=74.27  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.+|..++..+...|.+|+++|+++++.+.+..           .|. .          .....++ +.+++
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~----------~~~~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S----------PFHLSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e----------eecHHHHHHHhCC
Confidence            68999999999999999999999999999999876554311           110 0          0001122 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +|+||.++|...     +-++..+.++++.+|++.++.
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence            999999998321     224445567788888766553

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.69  E-value=5.3e-05  Score=80.70  Aligned_cols=100  Identities=15%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.+|..+|..+...|.+|+.||+.+...                .            .......++ +.++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence            789999999999999999999999999999863210                0            011223345 66799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+-.  -+.+.+.+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            9999999998777655554667778999998875544433  344555543

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.67  E-value=6.4e-05  Score=68.97  Aligned_cols=102  Identities=27%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCC---------CCChh-----hh
Q 007805           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT  147 (589)
Q Consensus        94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl---------~p~~g-----~~  147 (589)
                      ..+..|||+|.++|.|..+++-|+.+||-+++.+.+.++..-+.            +|+         ....+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35789999999999999999999999999999999877655443            232         11111     00


Q ss_pred             ----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHH
Q 007805          148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (589)
Q Consensus       148 ----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~  196 (589)
                          ..+                 .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence                001                 1111112 22336799999999999999999998887776655543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.67  E-value=0.00044  Score=66.29  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            679999999999999999999999999999998876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.67  E-value=0.0001  Score=75.85  Aligned_cols=102  Identities=17%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      -||+|||+ |.+|+++|..+...|.       +++++|+++.  .++.-...+.+....              .......
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i   69 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP--------------LLAGVVA   69 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccc--------------ccCCcEE
Confidence            57999998 9999999999998885       7999999752  232211111111000              0011112


Q ss_pred             -cCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          379 -VLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       379 -~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                       ..+++++++||+||.+.  |.            +..+.+++..++.++.+++++++..|.
T Consensus        70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence             35568999999999876  21            234556677778888886777765553

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.66  E-value=0.00064  Score=64.67  Aligned_cols=137  Identities=17%  Similarity=0.232  Sum_probs=96.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      -.++.++-..+...|..++.++.-+-  +-|.+.|      +|+..                ...++ +.|...+-||..
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~----------------GlaIy-d~m~~~~~~V~T   90 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA----------------GLAIY-DTMRYIKAPVST   90 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence            45888899999888888876433222  2234433      33221                23556 678899999999


Q ss_pred             EeCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh-----------------hHhhhcC--HHHHHHH
Q 007805          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVG--LSKAIEM  162 (589)
Q Consensus       104 av~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~~~~G--~~~a~~l  162 (589)
                      .+.|.|.+.|.-|++++|-  |++.++|++-+....-|..  +..+.                 .+.+.-|  .....++
T Consensus        91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~  168 (201)
T PRK14513         91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD  168 (201)
T ss_pred             EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            9999999999999999996  8999999988766654431  11111                 1122233  3445566


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCch
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSE  187 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~  187 (589)
                      +-....++|+||+++||||+|+++.
T Consensus       169 ~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        169 MERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             hccCcccCHHHHHHcCCCcEEeccC
Confidence            7777889999999999999998653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.66  E-value=0.00017  Score=74.34  Aligned_cols=97  Identities=11%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.+|..+|..+...|.+|+.||+..... .                             .. ..++ +.++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence            689999999999999999998899999999863210 0                             00 1133 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+-+-.  -+.+.+.+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998887665555667788999998875554433  345555554

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.66  E-value=0.00032  Score=74.72  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhC-------CC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  377 (589)
                      .-||+|||+ |.+|.++|..++..       |+  +++++|++++.++.-.-.++.....+              +..+.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~  165 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS  165 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence            368999999 99999999999988       65  89999999988765433333222111              11233


Q ss_pred             -ccCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          378 -GVLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       378 -~~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                       .+.+++++++||+||.+.  |.            +..+.+++..+|.++..++++++..+
T Consensus       166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs  226 (444)
T PLN00112        166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG  226 (444)
T ss_pred             EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence             245669999999999876  22            23345555566777566777766554

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.60  E-value=0.0032  Score=63.52  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        13 ~~v~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      +.-..|.-|++.  .-+++...-+.+.++++.+... .+-+|.|.-.|+     +-+++   ..  .....+.+.. ..+
T Consensus       120 G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi--~sL~~~ak~~-~a~  187 (292)
T PRK05654        120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GL--LSLMQMAKTS-AAL  187 (292)
T ss_pred             CEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hh--hHHHhHHHHH-HHH
Confidence            333444555664  4899999999999999998765 466777765443     22221   00  0001111111 222


Q ss_pred             HHHHHhCCCcEEEEeCCcccchhhH-HhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805           91 VNLIEDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (589)
Q Consensus        91 ~~~l~~~~kp~iaav~G~a~GgG~~-lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  169 (589)
                       .++.....|.|+++-|.|+||+.. .++.+|+++|.++|.+++.-.+           .+...+|..    +  .-+.-
T Consensus       188 -~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~----l--pe~~~  249 (292)
T PRK05654        188 -KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK----L--PEGFQ  249 (292)
T ss_pred             -HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh----h--hhhhc
Confidence             345667899999999999999764 5778999999999877763221           111111111    0  11123


Q ss_pred             CHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       170 ~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      +++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus       250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~  284 (292)
T PRK05654        250 RAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP  284 (292)
T ss_pred             CHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence            67777889999999999999988888877665443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.60  E-value=0.00025  Score=74.48  Aligned_cols=185  Identities=12%  Similarity=0.074  Sum_probs=107.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEE------EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      ++|+|||.|.+|.+-|..+...|++|+      .+|.+.+.-+++.           +.|             +...+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence            689999999999999999999999998      4444444433331           112             2222222


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC----------CC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV  452 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~  452 (589)
                      ++++.||+|+..+|+. . ...++.++.+++++++++.-+. +..+....-..+....++-+-|-.|-          .-
T Consensus        93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            7789999999999966 3 7788899999999999885322 22222111111111223333332221          11


Q ss_pred             CCeeeEec-CCCCCHHHHHHHHHHHHHcCCe---eEEE--c-C-CCCccccc-ccHHHH---HHHH--HHHHcCCCHHHH
Q 007805          453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVV--G-N-CTGFAVNR-AFFPYS---QSAR--LLVSLGVDVFRI  518 (589)
Q Consensus       453 ~~lveiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v--~-d-~~Gfi~nR-i~~~~~---~Ea~--~l~~~Gv~~~~i  518 (589)
                      .|...-|. -...+-.+.+.+..+...+|..   ++..  . + ..-....| +++..+   .++.  .++++|++|++.
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            12222222 1344566788899999999976   3322  1 1 11222233 333333   2332  677889988876


Q ss_pred             HH
Q 007805          519 DS  520 (589)
Q Consensus       519 D~  520 (589)
                      -.
T Consensus       250 ~k  251 (487)
T PRK05225        250 EK  251 (487)
T ss_pred             HH
Confidence            43

>PRK04148 hypothetical protein; Provisional

Probab=97.59  E-value=0.0013  Score=58.04  Aligned_cols=96  Identities=17%  Similarity=0.131  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|.+||+| -|.++|..|++.|++|+.+|++++..+.+.+.           + .+     ...+. -+..+.+.-++|
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dD-lf~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDD-LFNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECc-CCCCCHHHHhcC
Confidence            579999999 89999999999999999999999987776331           1 00     00000 012233556899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      |+|...-|  +.-.+.-+.+|++.+.-+.+|..-+.-
T Consensus        79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            99999887  444556667788888888887654443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.57  E-value=6e-05  Score=78.84  Aligned_cols=98  Identities=13%  Similarity=0.053  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.||+.+|..+...|.+|.+||+....  .               +           ... ...++ +.+++
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~-~~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEG-DFRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------ccc-ccCCHHHHHhh
Confidence            68999999999999999999999999999964221  0               0           000 11244 55789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      ||+|+..+|-..+    ...-+=++....++++++++..+-+-.  -+.+.+.+
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL  221 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL  221 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence            9999999985442    222222456677899998875554433  33454444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.56  E-value=0.00021  Score=73.11  Aligned_cols=98  Identities=17%  Similarity=0.283  Sum_probs=62.4

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-c-CC--c
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y  382 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  382 (589)
                      ||+|||+ |.+|+++|..++..++  ++.++|+++ ....+..         +....        ....+.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchH
Confidence            6999999 9999999999998876  899999987 2111100         11110        0012333 2 22  5


Q ss_pred             cCCCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          383 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       383 ~~~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      +++++||+||.+.--              +..+.+++..+|.++. |+++++..|...
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv  119 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV  119 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence            899999999987632              3345556666677775 566665444333

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.56  E-value=0.0005  Score=67.81  Aligned_cols=198  Identities=19%  Similarity=0.242  Sum_probs=115.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHH----HHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      |.||+-||+|..|++-...++..  ..+|+++|.+..++......    ++..+++.++         ...-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence            56899999999999877666543  46899999999887664321    1111111111         111134566778


Q ss_pred             c-cCCCCCCEEEEeccC-------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEe
Q 007805          382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGA  444 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~  444 (589)
                      . .+++++|+|+.+|..             |+......-+.|.+....+.|++ -.|++|+.   .+...+.+...  |+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence            7 679999999999843             44455566667888887887765 45666654   23333433322  33


Q ss_pred             cC------------------CCCCCCCCeeeEecCCCCCH--HHHHHHHHHHHHcC-CeeEEE-----cCCCCccccccc
Q 007805          445 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVV-----GNCTGFAVNRAF  498 (589)
Q Consensus       445 h~------------------~~p~~~~~lveiv~~~~t~~--e~~~~~~~l~~~lG-~~~v~v-----~d~~Gfi~nRi~  498 (589)
                      ||                  +||-.+     ++.|..|.+  .+++.+..+++.+- ..-+.+     .+.....+|-++
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl  223 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL  223 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence            33                  455443     677776654  34555555555432 222222     233344455544


Q ss_pred             HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 007805          499 FP---YSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       499 ~~---~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .-   -+|..-.+.|. |.+.+++-.++
T Consensus       224 aqrissins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  224 AQRISSINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence            32   23333344444 88888887776

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.55  E-value=0.00019  Score=73.93  Aligned_cols=92  Identities=17%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.||..++..+.. . ..+|++|+|++++.+...++++.       .|.           .+....+. +++
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av  187 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV  187 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence            679999999999999986654 4 46899999999987775443221       110           12334455 578


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+||.|.|...    .++..  +.++++++|...++
T Consensus       188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~  220 (314)
T PRK06141        188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN  220 (314)
T ss_pred             hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence            89999998887542    22221  45678886655444

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.55  E-value=0.00057  Score=71.68  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEE--eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  377 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-  377 (589)
                      -||+|||+ |.+|.++|..++..|.       .++++  |++++.++.-.-.+......              .+..+. 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence            68999999 9999999999998875       24455  88887765533333322110              011233 


Q ss_pred             ccCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          378 GVLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       378 ~~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      .+.+++++++||+||.+.  |.            +..+.+++...|.++.+++++++..|
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs  170 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG  170 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence            235568999999999865  22            23345566667788787888776554

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00018  Score=72.63  Aligned_cols=72  Identities=19%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++ ++                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence            6899999 99999999999999999999995 6542 11                                     3357


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      .||+||.|++....+...       .+++++++++.+..
T Consensus       201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin  232 (296)
T PRK14188        201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN  232 (296)
T ss_pred             cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence            899999999854433222       27899998876543

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.0034  Score=63.17  Aligned_cols=191  Identities=15%  Similarity=0.112  Sum_probs=120.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  383 (589)
                      ...|+.||++.||..++...+.+|+.|.+|+|+.++.+..+++-.        +|           ..+....++    .
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~   66 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS   66 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence            467999999999999999999999999999999999887644311        11           012223333    2


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC-CCCHH--HHhcccCCCCcEEEecCC---CCCCCCCeee
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLN--IVGEKTSSQDRIIGAHFF---SPAHVMPLLE  457 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~~~--~~~~~~~~~~r~ig~h~~---~p~~~~~lve  457 (589)
                      .++.--.||.-|-.-. ....++++|.+++.++-||++... .++-+  ...+.....--|+|+--.   ..+..+|.  
T Consensus        67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS--  143 (487)
T KOG2653|consen   67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS--  143 (487)
T ss_pred             hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence            3456667776663211 144678899999999888886432 23322  222222333346665541   11122211  


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe-----e--EEEcC-CCCccc----cccc---HHHHHHHHHHHHc--CCCHHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS  520 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~-----~--v~v~d-~~Gfi~----nRi~---~~~~~Ea~~l~~~--Gv~~~~iD~  520 (589)
                      ++||  .++++...++.+++.+..+     |  ..+++ ..|-++    |-|=   ..++.||+.++..  |++-.+|-.
T Consensus       144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~  221 (487)
T KOG2653|consen  144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE  221 (487)
T ss_pred             cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            4554  4788888888888776432     2  34544 445444    6663   4678899999977  568888777


Q ss_pred             HH
Q 007805          521 AI  522 (589)
Q Consensus       521 ~~  522 (589)
                      ++
T Consensus       222 vF  223 (487)
T KOG2653|consen  222 VF  223 (487)
T ss_pred             HH
Confidence            76

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.51  E-value=0.0042  Score=62.37  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=99.9

Q ss_pred             EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 007805           17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (589)
Q Consensus        17 ~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (589)
                      .|.-+++.  .-+++....+.+.++++.+... .+-+|.++..|++     -+++-.     .....+.+.. ..+ .++
T Consensus       123 ~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak~~-~~~-~~~  189 (285)
T TIGR00515       123 VVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAKTS-AAL-AKM  189 (285)
T ss_pred             EEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHHHH-HHH-HHH
Confidence            34444553  4799999999999999998755 4667777655443     111100     0011111111 222 346


Q ss_pred             HhCCCcEEEEeCCcccchhhH-HhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHH
Q 007805           95 EDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE  173 (589)
Q Consensus        95 ~~~~kp~iaav~G~a~GgG~~-lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~  173 (589)
                      .....|.|+++-|+|.||+.. .++.+|+++|.++|.+++.-.+           .+...+|..      +.-+.-+|+-
T Consensus       190 ~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~------lpe~~q~ae~  252 (285)
T TIGR00515       190 SERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK------LPEGFQTSEF  252 (285)
T ss_pred             HcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc------cchhcCCHHH
Confidence            667899999999999999754 6679999999999888763322           111112210      1111235666


Q ss_pred             HHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          174 GWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      +.+.|+||.||++.++.+...++...+..
T Consensus       253 ~~~~G~vD~iv~~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       253 LLEHGAIDMIVHRPEMKKTLASLLAKLQN  281 (285)
T ss_pred             HHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence            88899999999999998887777765543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.50  E-value=0.0002  Score=73.57  Aligned_cols=102  Identities=14%  Similarity=0.058  Sum_probs=72.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +++||||.|.+|..+|+.+.-.|.+|..||+++. -+.. +           .            ....+.+ + +.++.
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~-----------~------------~~~~y~~-l~ell~~  200 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-K-----------E------------LGARYVD-LDELLAE  200 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-h-----------h------------cCceecc-HHHHHHh
Confidence            7899999999999999999977889999999875 1110 0           0            1123333 4 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+..+|-..+...-+=++..+.++++++++..+-+-.  -..+.+.+.
T Consensus       201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         201 SDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK  251 (324)
T ss_pred             CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998888666666778888999988754333333  334444443

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.48  E-value=0.00068  Score=63.41  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             eEEEEcCCCCcHHHH--HHHHhC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       310 kI~IIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      ||+|||+|..-.+.-  ..+...    +-+++++|+|+++++....-.+..    .+.-..+        -++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence            799999999876643  223322    338999999999988764433333    2221111        246778888 


Q ss_pred             cCCCCCCEEEEec
Q 007805          383 SEFKDVDMVIEAV  395 (589)
Q Consensus       383 ~~~~~aDlVIeav  395 (589)
                      +++++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            8899999999766

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.48  E-value=0.00042  Score=73.37  Aligned_cols=86  Identities=19%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+..           .|.             ......+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence            68999999999999999999999999999999988776522           221             001111456789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecC
Q 007805          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT  423 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t  423 (589)
                      |+||+|+....     ++. .....++++.+++..+
T Consensus       259 DVVI~atG~~~-----~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNKD-----IITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcCCCCcEEEEeC
Confidence            99999986322     233 3456788888876444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.48  E-value=0.00053  Score=70.07  Aligned_cols=97  Identities=20%  Similarity=0.336  Sum_probs=61.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-C-C--
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D--  381 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--  381 (589)
                      .||+|||+ |.+|+++|..++..|.  +++++|++  .+ .+..     ++  +..+.        ..-.+... . +  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a-~g~a-----lD--L~~~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT-PGVA-----AD--LSHIN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc-ceee-----hH--hHhCC--------CcceEEEecCCCch
Confidence            38999999 9999999999998885  89999998  21 1110     00  11110        00133432 2 2  


Q ss_pred             ccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          382 YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       382 ~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++++++||+||.+.  |.            +..+.+++...|.++. |+++++..|.
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtN  118 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISN  118 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence            58999999999876  32            3334555666677775 5666654443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.43  E-value=0.00017  Score=74.30  Aligned_cols=101  Identities=16%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      .||+|||+ |.+|.++|..++..|.       +++++|++++.  ++.-.-.+.....              .....+..
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence            58999999 9999999999998886       79999996432  2211111110000              00011122


Q ss_pred             -cCCccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          379 -VLDYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       379 -~~~~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                       +.+++++++||+||.+.-  .            +..+.+++..+|.++.+++++++..|
T Consensus        69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence             455689999999998762  2            23345666677888886677666554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.43  E-value=0.013  Score=58.32  Aligned_cols=139  Identities=15%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCc
Q 007805           25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (589)
                      .-++....-+.+..+++.+.+|    ..+-+|.|.-.|+     +-+++-..    . ...+.+.. ..+ ..+... .|
T Consensus        72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~i~-~~~-~~ls~~-vP  138 (274)
T TIGR03133        72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAEIM-RAI-LDARAA-VP  138 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHHHH-HHH-HHHhCC-CC
Confidence            3688888889999999988752    1234666654333     33322100    0 00111111 122 224444 99


Q ss_pred             EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH--HHHHHHHHcCCCCCHHHHHH
Q 007805          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK  176 (589)
Q Consensus       101 ~iaav~G~--a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~--~~a~~l~ltg~~~~a~~A~~  176 (589)
                      +|+++-|.  |+||+..++..||++|+++++++++.-.           .......|.  -...+--|.-+.+.++....
T Consensus       139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~  207 (274)
T TIGR03133       139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL  207 (274)
T ss_pred             EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence            99999999  8999999999999999999887775211           111111221  11122223334455666778


Q ss_pred             cCCcceecCch
Q 007805          177 LGLIDAVVTSE  187 (589)
Q Consensus       177 ~Glv~~vv~~~  187 (589)
                      .|++|.+++++
T Consensus       208 sG~~D~~v~dd  218 (274)
T TIGR03133       208 SGDADVLVEDD  218 (274)
T ss_pred             cccceEEeCCH
Confidence            99999999764

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.42  E-value=0.00036  Score=71.81  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+          |.           .....++. +.+.
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  237 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN  237 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence            68999999999999999998865 68999999998765532211          10           00001122 4567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhC-CCCcEEEecC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~t  423 (589)
                      ++|+||.|++....  ..++..+.... ..+.++++.+
T Consensus       238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence            89999999985443  33344433222 2455666554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02306 hydroxypyruvate reductase

Probab=97.42  E-value=0.00032  Score=73.88  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|||||.|.+|..+|..+. ..|.+|+.||+.+.. .+.........   ....+...        .......++ +.+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~---l~~~~~~~--------~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccc---cccccccc--------ccccccCCHHHHH
Confidence            68999999999999999985 669999999987642 11100000000   00000000        011123455 667


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (589)
                      +.||+|+.++|-..+.+.-+=++..+.++++++++..+-+-  .-..+.+.+.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK  287 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999999777765555566778899999887555443  3344555543

>PLN00106 malate dehydrogenase

Probab=97.39  E-value=0.00019  Score=73.80  Aligned_cols=97  Identities=18%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCC-
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLD-  381 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~-  381 (589)
                      .||+|||+ |.+|+.+|..++..+.  ++.++|+++ ....+. .+.        ..  .     . .-.+.   ..++ 
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~--------~~--~-----~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVS--------HI--N-----T-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhh--------hC--C-----c-CceEEEEeCCCCH
Confidence            59999999 9999999999997775  899999987 111010 000        00  0     0 00222   2223 


Q ss_pred             ccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          382 YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       382 ~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++++++||+||.+.-  .            +..+.+++.+.+.++. ++++++..|.
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSN  136 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISN  136 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            378999999997652  2            3345556666777777 5555543333

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.39  E-value=0.0002  Score=64.17  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      -++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+        ....+          .....+++ +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence            47899999999999999999999986 999999999877653322        00000          01122233 456


Q ss_pred             CCCCEEEEeccCCh
Q 007805          386 KDVDMVIEAVIESV  399 (589)
Q Consensus       386 ~~aDlVIeavpe~~  399 (589)
                      .++|+||.|+|-..
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999997543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.39  E-value=0.00045  Score=72.85  Aligned_cols=96  Identities=24%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ...+..++++++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a  251 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG  251 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence            6899999999999999999999999999999997654431           1121             111111456789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCCC---CCHHHHhc
Q 007805          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTST---IDLNIVGE  433 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~~~~~~~  433 (589)
                      |+||+++.. .    .++. +....++++++++..+..   +....+.+
T Consensus       252 DVVItaTG~-~----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~  295 (406)
T TIGR00936       252 DIFITATGN-K----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE  295 (406)
T ss_pred             CEEEECCCC-H----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence            999998863 2    3333 355678899888754442   34445544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.38  E-value=0.00046  Score=71.42  Aligned_cols=94  Identities=10%  Similarity=-0.009  Sum_probs=64.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .++|+|||+|.||...+..+..  ...+|.+||+++++.+...+++++       .|           -.+...++. ++
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~ea  189 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREA  189 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHH
Confidence            3679999999999997766654  345899999999998775443321       11           012334555 77


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++||+||.|+|..-.+    +.  .+.+++++.|.+..|.
T Consensus       190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence            89999999999864322    21  2346888887766554

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.38  E-value=0.00076  Score=76.83  Aligned_cols=94  Identities=9%  Similarity=0.053  Sum_probs=76.4

Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCC-CCcEEEecCCCCCC------------CCCe
Q 007805          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL  455 (589)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~~p~~------------~~~l  455 (589)
                      ||+|+|  +....++++++.++++++++|++.+|+-  .+..+...++. ..+|+|.||+....            .+..
T Consensus         1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            689999  8888999999999999999998877753  34555555443 35799999966552            4456


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      +.++|.+.++++.++.+.++++.+|.+++.+
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~  109 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAM  109 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            6788999999999999999999999999988

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.36  E-value=0.0004  Score=69.46  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||. |.||.+||..|.++|+.|++|.....                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            68999998 99999999999999999999942211                                      22 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +||+||.|++..-.+..+       .+++++++++.+.
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgi  231 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGM  231 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEecc
Confidence            899999999844433332       3789999887653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.36  E-value=0.00057  Score=63.99  Aligned_cols=95  Identities=21%  Similarity=0.295  Sum_probs=59.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-----
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-----  380 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-----  380 (589)
                      ||.|||+|-||+.++..|+..|+ +++++|.+.   +.+.+-.     ...  -.-|+-..+.....+.++....     
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~-----~~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-----YFL--SQIGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc-----ccH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            58999999999999999999998 599999886   3332210     000  0112212222222222221111     


Q ss_pred             -------Cc-cCCCCCCEEEEeccCChHHHHHHHHHHHHh
Q 007805          381 -------DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA  412 (589)
Q Consensus       381 -------~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~  412 (589)
                             +. +.++++|+||+| .++++.+..+.......
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                   11 347899999999 56888887777776665

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.34  E-value=0.0012  Score=64.55  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  384 (589)
                      ++|.|||+|.+|.++|..|.+.|++|+++|.+++..++....   .+...+-.|               -.++.    ++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g---------------d~t~~~~L~~a   62 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG---------------DATDEDVLEEA   62 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe---------------cCCCHHHHHhc
Confidence            479999999999999999999999999999999988773220   000000001               11121    22


Q ss_pred             -CCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecC
Q 007805          385 -FKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNT  423 (589)
Q Consensus       385 -~~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~t  423 (589)
                       +.++|.+|-++.+|.  ...++..+... +....+|+-..
T Consensus        63 gi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          63 GIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             CCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEec
Confidence             789999999998655  34555555533 55556666433

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.34  E-value=0.00052  Score=72.87  Aligned_cols=86  Identities=22%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ... .++ +.+++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v-~~l~eal~~  267 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRV-MTMEEAAEL  267 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEe-cCHHHHHhC
Confidence            68999999999999999999999999999999887544311           12             111 112 45678


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||.|+.. .    .++. +....++++++++....
T Consensus       268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence            9999999842 2    2343 45667889988865544

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.34  E-value=0.00022  Score=72.72  Aligned_cols=97  Identities=28%  Similarity=0.325  Sum_probs=62.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805          313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (589)
Q Consensus       313 IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (589)
                      |||+|.+|+++|..++..+.  ++.++|++++.++.-...+.........            -..++ ..+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~------------~~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT------------PKKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC------------CeEEe-cCCHHHHCCCCE
Confidence            79999999999999998876  7999999887655433333222100000            01222 355689999999


Q ss_pred             EEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       391 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||.+.-.              +..+.+++..++.++. ++++++..|
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs  113 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT  113 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence            9987632              2334555666677765 555554333

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN02494 adenosylhomocysteinase

Probab=97.33  E-value=0.0021  Score=68.50  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence            6899999999999999999999999999999987654431           1111             111 12 45678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||++....-    .+..+..+.++++++++..+.
T Consensus       310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCC
Confidence            999999765322    233555667899998875554

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.32  E-value=0.0031  Score=59.33  Aligned_cols=136  Identities=21%  Similarity=0.260  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ++..+...+...+-.++.++..+-|.|  -+.|+...+|                      ...+ +.+...+.||...+
T Consensus        36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~~ik~~V~ti~   92 (200)
T COG0740          36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQFIKPPVSTIC   92 (200)
T ss_pred             echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHHhcCCCeEEEE
Confidence            444455666666666665544444444  3444333333                      2556 67889999999999


Q ss_pred             CCcccchhhHHhhhcCEE--EEeCCceEeccccccCCCCChhhhh-----------------hHhhhcCH--HHHHHHHH
Q 007805          106 EGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVGL--SKAIEMML  164 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~--ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~~~~G~--~~a~~l~l  164 (589)
                      -|.|...|.-|++++|..  ++.++|++-+-... |.+-|.. +-                 .+...-|.  ..-...+-
T Consensus        93 ~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~d  170 (200)
T COG0740          93 MGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTD  170 (200)
T ss_pred             ecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence            999999999999999885  77777776654443 2221111 10                 11111122  22234444


Q ss_pred             cCCCCCHHHHHHcCCcceecCchH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEE  188 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~  188 (589)
                      ....++|+||+++||||+|....+
T Consensus       171 rd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         171 RDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             ccccCCHHHHHHcCCcceeccccc
Confidence            667799999999999999986543

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.32  E-value=0.00075  Score=69.31  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CccceEEEEcC-CCCcHHHHHHHHhCC--CeEEEEeCC
Q 007805          306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN  340 (589)
Q Consensus       306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G--~~V~~~d~~  340 (589)
                      ..|+||+|||+ |.+|+.+|..++..+  .+++++|++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            46789999999 999999999999665  589999993

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.31  E-value=0.0044  Score=69.13  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 007805           12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (589)
Q Consensus        12 ~~~v~~i~l~~-p--~---~N~l~----------~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~   75 (589)
                      ++.+.+|-++. +  +   .+.+.          .-.+.++.++++.+..|+.|++|||.-.+   +.|.++..+.    
T Consensus        41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----  113 (584)
T TIGR00705        41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----  113 (584)
T ss_pred             CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence            56788888873 3  1   23221          23578999999999999999999997542   1233322211    


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEec
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL  133 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~  133 (589)
                               ...+.+ ..+....|||||..++.+ -+|+-|+.+||-+++.+.+.+++
T Consensus       114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence                     112333 346678899999888765 78999999999999999887754

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.30  E-value=0.0017  Score=69.66  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +||+|||+|.. +..+...+++.     +-+|+++|+++++++....    ...+..++...+        -++..++|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~----l~~~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE----AVKILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH----HHHHHHHhhCCC--------eEEEEECCH
Confidence            48999999875 33455555543     3589999999999877332    222233322111        257788888


Q ss_pred             -cCCCCCCEEEEec
Q 007805          383 -SEFKDVDMVIEAV  395 (589)
Q Consensus       383 -~~~~~aDlVIeav  395 (589)
                       +++++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence             8999999999766

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.27  E-value=0.0014  Score=66.89  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ..=++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+.           +           .  ...+..+.
T Consensus       160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~-----------~-----------~--~~~d~~~~  214 (336)
T KOG0069|consen  160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEY-----------Y-----------A--EFVDIEEL  214 (336)
T ss_pred             ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHh-----------c-----------c--cccCHHHH
Confidence            34579999999999999999999999 55555 5554443332110           0           0  01122266


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhccc
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  435 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~  435 (589)
                      +.++|+|+.|.|-..+...-+=+++...++++++|+...-+-.+.  ++.+.+
T Consensus       215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL  267 (336)
T KOG0069|consen  215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL  267 (336)
T ss_pred             HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence            899999999999888877777788999999999887666554433  344443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.26  E-value=0.00047  Score=71.92  Aligned_cols=77  Identities=27%  Similarity=0.252  Sum_probs=55.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~  383 (589)
                      |++|.|||+|.+|+.+|..|+++| .+|++-||++++++++.....         +++...       .+.+.+.  + +
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~-------~vD~~d~~al~~   64 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEAL-------QVDAADVDALVA   64 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeE-------EecccChHHHHH
Confidence            578999999999999999999999 899999999999888644221         111100       0111111  1 5


Q ss_pred             CCCCCCEEEEeccCChH
Q 007805          384 EFKDVDMVIEAVIESVP  400 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~  400 (589)
                      .+++.|+||.|+|....
T Consensus        65 li~~~d~VIn~~p~~~~   81 (389)
T COG1748          65 LIKDFDLVINAAPPFVD   81 (389)
T ss_pred             HHhcCCEEEEeCCchhh
Confidence            57888999999995443

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.25  E-value=0.0019  Score=69.07  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .||+|||+|.- ...+...+++.     +-+|+++|+++++++....-.+    +..+....+        -++..++|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence            48999999874 44555555543     3589999999999887433222    222322111        247788888


Q ss_pred             -cCCCCCCEEEEec
Q 007805          383 -SEFKDVDMVIEAV  395 (589)
Q Consensus       383 -~~~~~aDlVIeav  395 (589)
                       +++++||+||.++
T Consensus        69 ~~Al~gADfVi~~i   82 (425)
T cd05197          69 EDAIIDADFVINQF   82 (425)
T ss_pred             HHHhCCCCEEEEee
Confidence             8899999999766

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.23  E-value=0.0014  Score=63.56  Aligned_cols=104  Identities=25%  Similarity=0.338  Sum_probs=69.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ...||.|||.|..|.+.|..++.+|.  ++.++|.++++++-..=.+        +.|..     --...++....|+..
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s~-----f~~~~~V~~~~Dy~~   85 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGSA-----FLSTPNVVASKDYSV   85 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------ccccc-----cccCCceEecCcccc
Confidence            36799999999999999999998886  8999999998766532111        11110     011245667778888


Q ss_pred             CCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       385 ~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      -+++++||...--              +.++.+.++.++.++ +|++++...+.
T Consensus        86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSN  138 (332)
T KOG1495|consen   86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSN  138 (332)
T ss_pred             cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecC
Confidence            8999999987633              233333444444444 56776654443

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.23  E-value=0.0071  Score=58.28  Aligned_cols=143  Identities=19%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .++.++-+.+...+-.++.++..+  -+-|-+.|+...+|-=+..             .......+ +.+...+-||...
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv  113 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI  113 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence            455568999988888887554323  2333555655555511100             01123556 6788888999999


Q ss_pred             eCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh------------------hHhhhcC--HHHHHHH
Q 007805          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM  162 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~G--~~~a~~l  162 (589)
                      +-|.|.+.+.-|++++|-  |++.+++++-+....-|..   |.+.                  .+...-|  ...-.++
T Consensus       114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d  190 (222)
T PRK12552        114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD  190 (222)
T ss_pred             EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999995  8999999988766654431   2111                  1122222  2334455


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      +-....++|+||+++||||+|+.+
T Consensus       191 ~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        191 TDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             hcCCCcCCHHHHHHcCCCcEEecc
Confidence            556677999999999999999854

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.21  E-value=0.00069  Score=72.37  Aligned_cols=87  Identities=21%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ... .++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence            68999999999999999999999999999999876543211           11             111 122 55789


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~  425 (589)
                      +|+||.++. .    +.++ .+..+.++++++++..+..
T Consensus       310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCEEEECCC-c----ccccCHHHHhccCCCcEEEEcCCC
Confidence            999999974 2    2334 3555668899988654443

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.21  E-value=0.027  Score=55.12  Aligned_cols=157  Identities=15%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~-~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      .++.+--..+...+... +++..+-+|.|-=. +.|-.|..-++..-      .....+.. ..+ ....+.+.|+|+.|
T Consensus        44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE~~G~------~~a~A~l~-~a~-a~a~~~~vP~IsvI  114 (238)
T TIGR03134        44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREELLGI------NQALAHLA-KAL-ALARLAGHPVIGLI  114 (238)
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHHHHHH------HHHHHHHH-HHH-HHhhcCCCCEEEEE
Confidence            68877888888888875 55566656666433 22433433222110      11111111 222 22445669999999


Q ss_pred             CCcccchhh-HHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcC--CCCCHHHHHHcCCcce
Q 007805          106 EGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLIDA  182 (589)
Q Consensus       106 ~G~a~GgG~-~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg--~~~~a~~A~~~Glv~~  182 (589)
                      -|.++|||+ .+.+.+|.++|.+++.+       +.++.-+++..+-+-.  ..+.++.-+=  ...+.+.+.++|+||+
T Consensus       115 ~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~  185 (238)
T TIGR03134       115 YGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHA  185 (238)
T ss_pred             eCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccE
Confidence            999998886 45556888877766655       4555555555454433  3344443332  2457778999999999


Q ss_pred             ecCchHHHHHHHHHHHHHH
Q 007805          183 VVTSEELLKVSRLWALDIA  201 (589)
Q Consensus       183 vv~~~~l~~~a~~~a~~la  201 (589)
                      |+++.+-..-+.+++.-++
T Consensus       186 vi~~~~~~~~~~~~~~~~~  204 (238)
T TIGR03134       186 LLDVADADAPAAQLAAVLA  204 (238)
T ss_pred             EeCCCCcccHHHHHHHHHH
Confidence            9976553222244444433

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.20  E-value=0.0054  Score=60.82  Aligned_cols=182  Identities=16%  Similarity=0.111  Sum_probs=104.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      -++|+|||.|.-|.+=|..|..+|.+|++--+.... -++|           .+.|             +...+-.++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence            369999999999999999999999998866554333 3332           2222             33333338899


Q ss_pred             CCCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC----------CCCCe
Q 007805          387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HVMPL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~~~l  455 (589)
                      .||+|+.-+|+..  -.++++ +|.+.++.+..+.- +.++.+..-.-..+....++-.-|-.|-          .-.|.
T Consensus        74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~  150 (338)
T COG0059          74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGF-AHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA  150 (338)
T ss_pred             cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEe-ccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence            9999999999554  457777 89999999987642 2233322110000111112222222221          11122


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCe---eEEE--cC--CCCccccc-c----cHHHHHHHH-HHHHcCCCHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKV---PVVV--GN--CTGFAVNR-A----FFPYSQSAR-LLVSLGVDVFR  517 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d--~~Gfi~nR-i----~~~~~~Ea~-~l~~~Gv~~~~  517 (589)
                      +.-+. ...+-.+.+.+..+.+.+|..   ++-.  ++  ..-.+..+ +    +..++.-++ -|+|.|.+|+-
T Consensus       151 LiAV~-qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~  224 (338)
T COG0059         151 LIAVH-QDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL  224 (338)
T ss_pred             EEEEE-eCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            22222 223556788889999999843   2222  11  12223333 2    334455555 55688998874

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.19  E-value=0.0011  Score=68.35  Aligned_cols=100  Identities=18%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhccccc
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGV  379 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~  379 (589)
                      ||+|||+ |.+|+++|..++..|.       +++++|++++. ...+..              ++-.+.. .....+..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~--------------~Dl~d~~~~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV--------------MELMDCAFPLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE--------------eehhcccchhcCceecc
Confidence            6999999 9999999999998654       59999996543 111100              0000010 011223333


Q ss_pred             -CCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          380 -LDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       380 -~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                       .+++++++||+||.+.  |.            +..+.+++..+|.++.+++++++..|
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             3368899999999866  22            22234556666777776777776555

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.18  E-value=0.0019  Score=65.83  Aligned_cols=155  Identities=14%  Similarity=0.032  Sum_probs=86.5

Q ss_pred             CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCCCCCCEEEEeccC
Q 007805          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE  397 (589)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe  397 (589)
                      ||+.+|..|+++|++|++++++ +..+...           +.|. +...........+..+++++.+..+|+||.|++.
T Consensus         2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs   69 (293)
T TIGR00745         2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA   69 (293)
T ss_pred             chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence            7999999999999999999997 4444321           1121 0000000000022344555557789999999974


Q ss_pred             ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEEEecCCCCC-CCCCe-ee--------EecCCCCCH
Q 007805          398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPA-HVMPL-LE--------IVRTERTSA  466 (589)
Q Consensus       398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h~~~p~-~~~~l-ve--------iv~~~~t~~  466 (589)
                      .  -..++++.+.+++.++++|++...++... .+...++. .+++......+. ...+. ++        +-..+. +.
T Consensus        70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~  145 (293)
T TIGR00745        70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-EN  145 (293)
T ss_pred             h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-ch
Confidence            3  35677889999999999888777776543 34444432 233332211111 11111 11        111111 22


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCC
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNC  489 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~  489 (589)
                      +..+.+.+++...|..+....|.
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~di  168 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGDI  168 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecchH
Confidence            55667777777777665554443

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.18  E-value=0.024  Score=56.82  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++....-+.+.++++.+... .+-+|+++..|+     +-+++-.     .....+.+.. ..+.+....-..|.|++
T Consensus       146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~-----~sL~qmak~s-aa~~~~~~~~~vP~Isv  213 (296)
T CHL00174        146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGS-----LSLMQMAKIS-SALYDYQSNKKLFYISI  213 (296)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccc-----hhhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence            4889999999999999998765 355777765443     3322200     0011111111 11212122567999999


Q ss_pred             eCCcccchhhHH-hhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCccee
Q 007805          105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV  183 (589)
Q Consensus       105 v~G~a~GgG~~l-ala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~v  183 (589)
                      +.|+|.||+... ++.||++|+.+++.+++.-.+           .....+|..      +.-..=+|+-.++.|+||.+
T Consensus       214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~------lpe~fq~ae~l~~~G~vD~i  276 (296)
T CHL00174        214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT------VPEGSQAAEYLFDKGLFDLI  276 (296)
T ss_pred             EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc------CCcccccHHHHHhCcCceEE
Confidence            999999999865 777999999888876653221           000111100      01111257778899999999


Q ss_pred             cCchHHHHHHHHHHH
Q 007805          184 VTSEELLKVSRLWAL  198 (589)
Q Consensus       184 v~~~~l~~~a~~~a~  198 (589)
                      |+..++.+...++..
T Consensus       277 V~r~~lr~~l~~ll~  291 (296)
T CHL00174        277 VPRNLLKGVLSELFQ  291 (296)
T ss_pred             EcHHHHHHHHHHHHH
Confidence            999998877666554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.17  E-value=0.0012  Score=68.51  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+      +           -.+...++. +++
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~  190 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI  190 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            679999999999998877753 454 89999999998877654433111      1           012334554 568


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++|+||.|+|..-    .++.   ..+++++.|.+..|.
T Consensus       191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence            99999999998553    3333   456888888766553

>PRK10949 protease 4; Provisional

Probab=97.16  E-value=0.0045  Score=69.10  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccc
Q 007805           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG  111 (589)
Q Consensus        32 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~G  111 (589)
                      .+.++.++++.+..|+.|++|||.-.+..   |.....+             +...+.+ ..++...||+||. ...+.-
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s  157 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ  157 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence            45689999999999999999999764321   2211111             1112333 4467788999985 555557


Q ss_pred             hhhHHhhhcCEEEEeCCceEec
Q 007805          112 GGLELAMGCHARIAAPKTQLGL  133 (589)
Q Consensus       112 gG~~lala~D~~ia~~~a~~~~  133 (589)
                      +++-||.+||-+++.+.+.+++
T Consensus       158 ~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        158 GQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             hhhhhhhhCCEEEECCCceEEE
Confidence            8999999999999998876654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.15  E-value=0.001  Score=64.33  Aligned_cols=104  Identities=21%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc------
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG------  378 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~------  378 (589)
                      .+|+|||+|-+|+.+|..|+..|. +++++|.+.   +.+.+-   .  ....  .-|.-..+.....+..+..      
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---~--~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~  101 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ---Q--YFIS--QIGMPKVEALKENLLEINPFVEIEA  101 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccccc---E--eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence            579999999999999999999998 599999882   222210   0  0000  0111111111111111111      


Q ss_pred             -----c-CCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          379 -----V-LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       379 -----~-~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                           + .+. +.++++|+||+|+ ++...+..+............|..
T Consensus       102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~  149 (212)
T PRK08644        102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA  149 (212)
T ss_pred             EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence                 0 011 3467899999995 577777777766665533333433

>cd00704 MDH Malate dehydrogenase

Probab=97.14  E-value=0.00047  Score=71.05  Aligned_cols=100  Identities=17%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-  378 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-  378 (589)
                      ||+|||+ |.+|+.+|..++..|.       +++++|+++  +.++.-...+.....              ........ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence            7999999 9999999999998664       599999987  432211111110000              00011122 


Q ss_pred             cCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          379 VLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       379 ~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ..+++++++||+||.+.  |.            +..+.+++..+|.++++++++++..|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            34458899999999765  22            33445666677888876666665544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.10  E-value=0.0027  Score=55.62  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 007805          310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (589)
                      ||+|||+ |.+|..++..+... +++++.+ +++.+..+.+..          ..+.+...      ...... .+++ .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~   63 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E   63 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence            5899995 89999999999885 7887766 654322222110          00101000      000011 1112 2


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      .++|+||.|+|.+..  .++...+...+.+++++++.++.+..
T Consensus        64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccC
Confidence            589999999996653  34444455567889999998887664

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.09  E-value=0.0029  Score=67.56  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=49.6

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHhC-----CCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       309 ~kI~IIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      .||+|||+|..-+ .+...+++.     +-+|+++|++ +++++....-.+.    ..+....+        -.+..++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence            4899999998633 445555542     3589999999 7887664332222    22221111        24677888


Q ss_pred             c-cCCCCCCEEEEec
Q 007805          382 Y-SEFKDVDMVIEAV  395 (589)
Q Consensus       382 ~-~~~~~aDlVIeav  395 (589)
                      . +++++||+||.++
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            8 8899999999776

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.08  E-value=0.0022  Score=60.79  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=59.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhC--CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      +|++||+|.+|..+...+...  .+ -|.+||++.+++..+.+..                      . ....+++ +.+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~   58 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI   58 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence            799999999999999876643  24 4789999999877653311                      1 1122555 456


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++.|+|+||..  .+..+++..++.+. .-++||.|..
T Consensus        59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SVG   93 (255)
T COG1712          59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSVG   93 (255)
T ss_pred             hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEech
Confidence            99999999996  55455555554432 3466666543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.04  E-value=0.0017  Score=66.54  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.+|...+..+.. .+. +|.+|++++++.+...++++.       .+ +          .+. .++. +++
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av  186 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP  186 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence            679999999999999999875 564 799999999987775443321       01 0          111 2344 578


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++|+||.|+|..-.+    +..   .++|++.|....+.
T Consensus       187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence            9999999999855433    322   35788877665554

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.04  E-value=0.0023  Score=59.36  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+.                                     +.+++
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            78999999998 88899999999999999998853322                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      ||+||.|++..--+..+       .++++.++++.+..-.+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999743222222       34567777776655443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.02  E-value=0.0017  Score=67.31  Aligned_cols=92  Identities=13%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-hCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++++|||+|.+|...+..++ ..+. +|++|+|++++.+...+++...+      | +          .+...++. +++
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence            67999999999999999987 4664 79999999998877654432111      1 0          12234455 568


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++||+||.|+|....+    +.  .+.+++++.+....
T Consensus       193 ~~aDiVvtaT~s~~p~----i~--~~~l~~g~~i~~vg  224 (326)
T TIGR02992       193 SGADIIVTTTPSETPI----LH--AEWLEPGQHVTAMG  224 (326)
T ss_pred             ccCCEEEEecCCCCcE----ec--HHHcCCCcEEEeeC
Confidence            8999999999754322    21  12356777665433

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.99  E-value=0.0015  Score=67.43  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCC-------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhccccc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGV  379 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~  379 (589)
                      -||+|+|+ |.+|+.++..|+..+       .+|+++|+++.. +.+..            -.++-.+.. .....+...
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g------------~~~Dl~d~~~~~~~~~~~~   69 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEG------------VVMELQDCAFPLLKSVVAT   69 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccc------------eeeehhhccccccCCceec
Confidence            47999999 999999999998854       489999997531 11100            000100000 001233334


Q ss_pred             CCc-cCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          380 LDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       380 ~~~-~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      .++ +++++||+||.+.  |.            +..+.+++..++.++++++++++..|.
T Consensus        70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            554 8899999999765  21            122335666678888777777665443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.97  E-value=0.0012  Score=70.78  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||..++..|...| .+|+++++++++.+...+.+        ....++            . .+. +.+.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~--------g~~~i~------------~-~~l~~~l~  239 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL--------GGEAVK------------F-EDLEEYLA  239 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc--------CCeEee------------H-HHHHHHHh
Confidence            68999999999999999999999 68999999988765432211        000011            1 122 5567


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++|+||.|++.... +..+.++.....-+...++++.+
T Consensus       240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla  277 (417)
T TIGR01035       240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIA  277 (417)
T ss_pred             hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence            89999999864332 33344444322111234555554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.95  E-value=0.0016  Score=69.98  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||..++..+...|. +|+++++++++.+...+.+          |. +         .+.. .+. +.+.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~-~~~~~~l~  241 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-E---------AIPL-DELPEALA  241 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-c---------EeeH-HHHHHHhc
Confidence            689999999999999999999997 8999999998765532211          10 0         0001 122 4567


Q ss_pred             CCCEEEEeccCCh-HHHHHHHHHHHHhC-CCCcEEEecC
Q 007805          387 DVDMVIEAVIESV-PLKQKIFSELEKAC-PPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~~-~~k~~v~~~l~~~~-~~~~ii~s~t  423 (589)
                      ++|+||.|++... -+..+.++.....- ..+.++++.+
T Consensus       242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence            8999999997533 23344444432211 2345666554

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.93  E-value=0.0064  Score=62.15  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      -||+|||+|.||..++..+.++ +++++ ++|+++ +.+..             ..+             ...+.+. +.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~   57 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH   57 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence            5899999999999999988776 78877 579985 32211             001             1112233 44


Q ss_pred             CCCCCEEEEeccCChH
Q 007805          385 FKDVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~  400 (589)
                      +.++|+|++|.|....
T Consensus        58 l~~iDVViIctPs~th   73 (324)
T TIGR01921        58 LDDVDVLILCMGSATD   73 (324)
T ss_pred             ccCCCEEEEcCCCccC
Confidence            5789999999986554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.92  E-value=0.0015  Score=66.13  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|.|||+|-+|++++..|+..|. +|+++||++++.+...+.+....      ..          ..+....+. +.++
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            689999999999999999999998 79999999988776544332110      00          001111222 3567


Q ss_pred             CCCEEEEecc
Q 007805          387 DVDMVIEAVI  396 (589)
Q Consensus       387 ~aDlVIeavp  396 (589)
                      ++|+||.|+|
T Consensus       192 ~aDiVInaTp  201 (284)
T PRK12549        192 AADGLVHATP  201 (284)
T ss_pred             CCCEEEECCc
Confidence            8899998887

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=96.92  E-value=0.082  Score=53.40  Aligned_cols=96  Identities=19%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCc
Q 007805           25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (589)
                      .-++.......+..+++.+.++.    .+-+|.|.-.|+     +-+++-..    . ...+.+. +..+ ..+... .|
T Consensus        81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~i-~~~~-~~ls~~-VP  147 (301)
T PRK07189         81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAEI-MRAI-VDLRAA-VP  147 (301)
T ss_pred             CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHHH-HHHH-HHHhCC-CC
Confidence            47899999999999999887664    255666654333     23322100    0 0001111 1222 224444 99


Q ss_pred             EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEec
Q 007805          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL  133 (589)
Q Consensus       101 ~iaav~G~--a~GgG~~lala~D~~ia~~~a~~~~  133 (589)
                      +|+++.|.  |+||+...+.+||++|+++++++++
T Consensus       148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            99999999  9999999999999999999887775

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.017  Score=60.50  Aligned_cols=147  Identities=22%  Similarity=0.275  Sum_probs=102.0

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (589)
Q Consensus        12 ~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (589)
                      +..|..+.++.    .+++...+.+.+.++.++++.. -++||. -+++.                     +.+...+..
T Consensus        25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG---------------------l~~sm~~iv   78 (436)
T COG1030          25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG---------------------LLDSMRQIV   78 (436)
T ss_pred             CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc---------------------hHHHHHHHH
Confidence            34577777754    5999999999999999997753 344442 22110                     111223455


Q ss_pred             HHHHHhCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeccccccCC---CCChh-hhhh------HhhhcC--
Q 007805           91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV---IPGFG-GTQR------LPRLVG--  155 (589)
Q Consensus        91 ~~~l~~~~kp~iaav---~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl---~p~~g-~~~~------l~~~~G--  155 (589)
                       +.+.+.+.|++..|   .+.|..+|.-++++||+..+++.+.++-...-.+-   .+... ....      +.+.-|  
T Consensus        79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence             77999999988888   34699999999999999999999998875553332   11111 1111      122222  


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      ...|.+++.....++++||++.|++|-+..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~  187 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIAR  187 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence            356788999999999999999999998753

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.88  E-value=0.0027  Score=65.91  Aligned_cols=74  Identities=16%  Similarity=0.127  Sum_probs=53.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+...+++++.+      | +          .+...+++ +++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al  195 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV  195 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence            679999999999999888875 45 489999999998887654433211      1 0          12334555 667


Q ss_pred             CCCCEEEEeccCCh
Q 007805          386 KDVDMVIEAVIESV  399 (589)
Q Consensus       386 ~~aDlVIeavpe~~  399 (589)
                      +++|+||.|+|...
T Consensus       196 ~~aDiVi~aT~s~~  209 (330)
T PRK08291        196 AGADIIVTTTPSEE  209 (330)
T ss_pred             ccCCEEEEeeCCCC
Confidence            88999999987543

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.86  E-value=0.004  Score=61.42  Aligned_cols=86  Identities=15%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC---Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      +||+|||+|.||..++..+.+.+   ++ +.++++++++.+...                         +.....++++.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence            68999999999999999987642   44 446788876544421                         11234455643


Q ss_pred             --CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       385 --~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                        ....|+|+||..  .+..++.-..+... ..+.++.|.
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~Sv   94 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICSA   94 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEECh
Confidence              478999999997  55555555544432 234444443

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.85  E-value=0.0025  Score=64.28  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|+|+|.+|.+++..++..|++|+++++++++.+...+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            67999999999999999999999999999999887766433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.83  E-value=0.0015  Score=57.23  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             eEEEEc-CCCCcHHHHHHHHhCC-Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCC
Q 007805          310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF  385 (589)
Q Consensus       310 kI~IIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  385 (589)
                      ||+||| .|.+|..+...|.++- ++ +.++.++.+.-.....    ...  ...+          ...+...+ +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence            799999 8999999999999863 35 4456666522111100    000  0000          01222222 34667


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      +++|+||.|+|  .....++..++   ++.++.|+++++.+...
T Consensus        65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~  103 (121)
T PF01118_consen   65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD  103 (121)
T ss_dssp             TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred             hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence            99999999998  44455655554   45778888998876554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.77  E-value=0.004  Score=63.87  Aligned_cols=94  Identities=12%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .+.++|||+|.++......+..- + -+|.+|+++++..++...++++.+       .          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence            46799999999999999888753 3 389999999999888655443221       1          124455665 78


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +++||+|+.|+|.+..+..      .+.+++++.|....+
T Consensus       193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~aiGa  226 (330)
T COG2423         193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAIGA  226 (330)
T ss_pred             hhcCCEEEEecCCCCCeec------HhhcCCCcEEEecCC
Confidence            9999999999986553211      134667877765444

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.76  E-value=0.0033  Score=63.16  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|. +|.++|..|...|..|++++.....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999987543221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|++-.     .++..  +.+++++++++..+.
T Consensus       202 ADIVIsAvg~p-----~~i~~--~~vk~gavVIDvGi~  232 (286)
T PRK14175        202 ADVIVSAVGKP-----GLVTK--DVVKEGAVIIDVGNT  232 (286)
T ss_pred             CCEEEECCCCC-----cccCH--HHcCCCcEEEEcCCC
Confidence            99999999732     22222  357888988876653

>PRK06046 alanine dehydrogenase; Validated

Probab=96.76  E-value=0.0038  Score=64.72  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.+|...+..+... +. .|.+||+++++.+...+++.+.+      +           -.+...++. +.+
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l  192 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC  192 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence            6899999999999999888743 44 78899999998887655432110      1           012334455 445


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      + +|+|+.|+|..-.+    +.  .+.+++++.|.+..|.
T Consensus       193 ~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        193 D-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGAD  225 (326)
T ss_pred             h-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence            5 99999999854322    21  1246788877665553

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.76  E-value=0.0035  Score=57.71  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      +||+|||+ |..|+.|+.-..++||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999997 999999999999999999999999998754

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.75  E-value=0.0067  Score=53.36  Aligned_cols=102  Identities=19%  Similarity=0.155  Sum_probs=59.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|+|+ |.||+.|+..+.+ .++++. .+|++++....  +.+.    .....+          ...+..++++ +.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence            37999999 9999999999998 688854 67887621110  0000    000000          0124445666 55


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      ++.+|+||+...  ++...+.++...+   .+..+++.|+++.-+++
T Consensus        65 ~~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~  106 (124)
T PF01113_consen   65 LEEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQI  106 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred             cccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence            677999999883  5544455454444   36667788888875544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.75  E-value=0.0034  Score=59.89  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            67999996 999999999999999999999999887766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.75  E-value=0.0039  Score=63.69  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .++++|||+|.+|...+..+..- .+ +|.+|++++++.+...++++..+      |           -.+...++. ++
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea  179 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA  179 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence            36799999999999988877753 33 89999999999887655443211      1           123445555 77


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++||+|+.|++..-.+    +.  .+.++|++.|....|.
T Consensus       180 v~~aDIV~taT~s~~P~----~~--~~~l~pg~hV~aiGs~  214 (301)
T PRK06407        180 LRDADTITSITNSDTPI----FN--RKYLGDEYHVNLAGSN  214 (301)
T ss_pred             HhcCCEEEEecCCCCcE----ec--HHHcCCCceEEecCCC
Confidence            89999999999754432    21  1246678777655543

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.73  E-value=0.051  Score=59.58  Aligned_cols=165  Identities=12%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.=|+|.  .-++++...+...++++.+++. .+-+|.|.-.++ |..|.+-..          ....+...+++ .++.
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~~  385 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAYS  385 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence            3445664  3679999999999999988764 456666654433 555544221          01112222444 5678


Q ss_pred             hCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHh-hhcC----HHHHHHHH---
Q 007805           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVG----LSKAIEMM---  163 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-~~~G----~~~a~~l~---  163 (589)
                      ....|.|+.|-|.|+|||..-+.    .+|+++|.++++++       ++++-++...+- +.+-    ...+....   
T Consensus       386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~  458 (512)
T TIGR01117       386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKIAE  458 (512)
T ss_pred             hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence            89999999999999888654433    28999888887665       443333333222 2111    11111111   


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      ..-+..++..+.+.|+||.|+++.+......++.+.+..
T Consensus       459 ~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       459 YREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES  497 (512)
T ss_pred             HHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence            122345888999999999999999988777776665443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN00203 glutamyl-tRNA reductase

Probab=96.73  E-value=0.0032  Score=68.88  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      -++|+|||+|.||..++..|...|. +|+++++++++.+...+.+.         + ..        -.....++. +.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g-~~--------i~~~~~~dl~~al  327 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------D-VE--------IIYKPLDEMLACA  327 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------C-Cc--------eEeecHhhHHHHH
Confidence            3689999999999999999999997 79999999988766432110         1 00        001111233 567


Q ss_pred             CCCCEEEEeccC-ChHHHHHHHHHHH
Q 007805          386 KDVDMVIEAVIE-SVPLKQKIFSELE  410 (589)
Q Consensus       386 ~~aDlVIeavpe-~~~~k~~v~~~l~  410 (589)
                      .++|+||.|++. .+-+..+.++++.
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEALP  353 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence            899999999854 2334555655554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.73  E-value=0.0099  Score=51.65  Aligned_cols=77  Identities=23%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ||+|||+|.+|......+...  +++|+ ++|+++++.+...+.                       -.+...+|+ +.+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence            799999999999999888876  45654 889999887764221                       123345555 344


Q ss_pred             C--CCCEEEEeccCChHHHHHHHHHHHH
Q 007805          386 K--DVDMVIEAVIESVPLKQKIFSELEK  411 (589)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~  411 (589)
                      +  +.|+|++|+|...  -.++..+..+
T Consensus        59 ~~~~~D~V~I~tp~~~--h~~~~~~~l~   84 (120)
T PF01408_consen   59 ADEDVDAVIIATPPSS--HAEIAKKALE   84 (120)
T ss_dssp             HHTTESEEEEESSGGG--HHHHHHHHHH
T ss_pred             HhhcCCEEEEecCCcc--hHHHHHHHHH
Confidence            3  7899999998544  3355444433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.72  E-value=0.039  Score=55.77  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  385 (589)
                      -|||+||+|.||+.|+..... .|++|. +-|++.+...++..+....-...++....+.-..+-..+.+..++|.+.+ 
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            579999999999999988775 599876 55888887777644321111011111111111111112455666666443 


Q ss_pred             --CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC-----CCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE
Q 007805          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI  458 (589)
Q Consensus       386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-----~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei  458 (589)
                        ...|+||+++--...--+-.+   .......-++.-|.-     +..+...+...       |            +..
T Consensus        98 ~~~~IdvIIdATG~p~vGA~~~l---~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------G------------viy  155 (438)
T COG4091          98 ANDLIDVIIDATGVPEVGAKIAL---EAILHGKHLVMMNVEADVTIGPILKQQADAA-------G------------VIY  155 (438)
T ss_pred             cCCcceEEEEcCCCcchhhHhHH---HHHhcCCeEEEEEeeeceeecHHHHHHHhhc-------C------------eEE
Confidence              456899998731111111222   223334445544432     22222222211       1            123


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      ..+....|..+-.+.+|.+++|..++.++
T Consensus       156 S~~~GDeP~~~mEL~efa~a~G~evv~aG  184 (438)
T COG4091         156 SGGAGDEPSSCMELYEFASALGFEVVSAG  184 (438)
T ss_pred             eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence            33445567778888899999999999985

>PRK05086 malate dehydrogenase; Provisional

Probab=96.69  E-value=0.0047  Score=63.49  Aligned_cols=95  Identities=18%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc--cCC-
Q 007805          309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD-  381 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-  381 (589)
                      +||+|||+ |.+|.++|..+..   .+++++++|+++.....+..         +....        ....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD---------l~~~~--------~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD---------LSHIP--------TAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh---------hhcCC--------CCceEEEeCCCCH
Confidence            58999999 9999999998855   24689999998542100000         00000        0011222  345 


Q ss_pred             ccCCCCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          382 YSEFKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       382 ~~~~~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      .++++++|+||.|.-.  ++            .+.+++.+.+.++. ++++++.
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv  116 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI  116 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            3788999999998843  21            24445556667664 5555543

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.66  E-value=0.0039  Score=62.32  Aligned_cols=94  Identities=18%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|+|+ |.||..++..+.+. +++++ ++|++++.....            ..            ..+...+++ +.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            58999998 99999999888764 67765 588887653321            00            012234555 44


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      ++++|+||++.|  ++.-.++....   +..+.-++..|++.+.++.
T Consensus        58 l~~~DvVid~t~--p~~~~~~~~~a---l~~G~~vvigttG~s~~~~   99 (257)
T PRK00048         58 LADADVLIDFTT--PEATLENLEFA---LEHGKPLVIGTTGFTEEQL   99 (257)
T ss_pred             ccCCCEEEECCC--HHHHHHHHHHH---HHcCCCEEEECCCCCHHHH
Confidence            568999999987  33333443333   3334434444666665544

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.65  E-value=0.0042  Score=65.48  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -.+|.|||+|.+|...+..+...|.+|+++|+++++++.+......    .+.....+.             .++ +.++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~-------------~~l~~~l~  229 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNA-------------YEIEDAVK  229 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCH-------------HHHHHHHc
Confidence            3679999999999999999999999999999999876654221100    000000000             112 4567


Q ss_pred             CCCEEEEecc--CChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++|+||.|++  .... ..-+.++....++++.+|++.+
T Consensus       230 ~aDvVI~a~~~~g~~~-p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       230 RADLLIGAVLIPGAKA-PKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cCCEEEEccccCCCCC-CcCcCHHHHhcCCCCCEEEEEe
Confidence            8999999973  2110 0011233334567888776543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.65  E-value=0.0044  Score=62.76  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|.|+|+|-+|.+++..|+..| .+|++++|+.++.+...+.+..       .+            .+....+. +.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            67999999999999999999999 6999999999887665433210       00            01111122 5567


Q ss_pred             CCCEEEEeccCCh
Q 007805          387 DVDMVIEAVIESV  399 (589)
Q Consensus       387 ~aDlVIeavpe~~  399 (589)
                      ++|+||-|+|-..
T Consensus       185 ~~DivInaTp~g~  197 (278)
T PRK00258        185 DFDLIINATSAGM  197 (278)
T ss_pred             cCCEEEECCcCCC
Confidence            8999999998433

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.62  E-value=0.014  Score=68.44  Aligned_cols=121  Identities=15%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhCCHH-----HHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhC-CCe
Q 007805          260 YSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIY  333 (589)
Q Consensus       260 ~~~l~~E~~~~~~~~~s~~-----~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~-G~~  333 (589)
                      ++.|......+..+....+     ..+..+.|..+.+-+..-...........+++|+|||+|.||...|..|++. +++
T Consensus       516 ~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~  595 (1042)
T PLN02819        516 KEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTIS  595 (1042)
T ss_pred             HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCcc
Confidence            4444444444444443221     2345555554444332111111122334578999999999999999999875 334


Q ss_pred             -------------EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc----cCCCCCCEEEEec
Q 007805          334 -------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEAV  395 (589)
Q Consensus       334 -------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~~~~aDlVIeav  395 (589)
                                   |++.|++++.++.+.+.+.         + +         ..+.. .+|.    +.++++|+||.|+
T Consensus       596 ~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsal  656 (1042)
T PLN02819        596 YYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-A---------EAVQLDVSDSESLLKYVSQVDVVISLL  656 (1042)
T ss_pred             ccccccccccccEEEEECCCHHHHHHHHHhcC---------C-C---------ceEEeecCCHHHHHHhhcCCCEEEECC
Confidence                         9999999888766433110         0 0         00111 2232    3357899999999


Q ss_pred             cCCh
Q 007805          396 IESV  399 (589)
Q Consensus       396 pe~~  399 (589)
                      |...
T Consensus       657 P~~~  660 (1042)
T PLN02819        657 PASC  660 (1042)
T ss_pred             Cchh
Confidence            9654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.62  E-value=0.025  Score=54.33  Aligned_cols=126  Identities=20%  Similarity=0.257  Sum_probs=75.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---CccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~  384 (589)
                      ++|.|||+|.+|...+..|.+.|.+|++++++.. .+..           +.+.+.            +.+..   ..+.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~~   67 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGK------------IRWKQKEFEPSD   67 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCC------------EEEEecCCChhh
Confidence            6899999999999999999999999999987532 1221           122222            11111   1245


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE  462 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~  462 (589)
                      +.++|+||.|+. +.++...+...    +..+. ++.+....+.               ..|..|.  ..+++..-+.+.
T Consensus        68 l~~adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~  126 (202)
T PRK06718         68 IVDAFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAES---------------GNVVFPSALHRGKLTISVSTD  126 (202)
T ss_pred             cCCceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECC
Confidence            789999998875 55555555433    33333 3333221111               1222332  344556666777


Q ss_pred             CCCHHHHHHHHHHHHH
Q 007805          463 RTSAQVILDLMTVGKI  478 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~  478 (589)
                      +.+|.....+++-++.
T Consensus       127 G~sP~la~~lr~~ie~  142 (202)
T PRK06718        127 GASPKLAKKIRDELEA  142 (202)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            7788777777766654

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.016  Score=61.09  Aligned_cols=76  Identities=20%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             cceEEEEcCCCCcHHHH-HHHHh-----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      ..||+|||+|.-+.+-- ..+..     .+.++.++|+++++++.    +.....++++.-..+        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecC
Confidence            35899999999876643 22222     24589999999999873    233333444433222        34777888


Q ss_pred             c-cCCCCCCEEEEec
Q 007805          382 Y-SEFKDVDMVIEAV  395 (589)
Q Consensus       382 ~-~~~~~aDlVIeav  395 (589)
                      . +++++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            8 8899999999776

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.57  E-value=0.012  Score=56.64  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|.+|..-+..|++.|.+|++++.+.. .+..           +.+.|.+.         .+.-.-..+.+.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~   69 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG   69 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence            5899999999999999999999999999987654 1111           12223221         0000111245789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCC--CCCCCeeeEecCCCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS  465 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p--~~~~~lveiv~~~~t~  465 (589)
                      +|+||.|.. +.++...++....    ...+++.+.+....               ..|..|  ...++++.-+.+.+.+
T Consensus        70 ~~lVi~at~-d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s  129 (205)
T TIGR01470        70 AFLVIAATD-DEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA  129 (205)
T ss_pred             cEEEEECCC-CHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence            999998854 5555555554433    33344433322111               122233  2344555566777778


Q ss_pred             HHHHHHHHHHHHHc
Q 007805          466 AQVILDLMTVGKII  479 (589)
Q Consensus       466 ~e~~~~~~~l~~~l  479 (589)
                      |.....+++-++.+
T Consensus       130 P~la~~lr~~ie~~  143 (205)
T TIGR01470       130 PVLARLLRERIETL  143 (205)
T ss_pred             cHHHHHHHHHHHHh
Confidence            87777776666543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.57  E-value=0.004  Score=67.88  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++++|+|+|.||.+++..|+..|++|+++++++++.+...+.+        .....+             ..+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence            5799999999999999999999999999999988766542211        000011             1122335789


Q ss_pred             CEEEEeccCCh
Q 007805          389 DMVIEAVIESV  399 (589)
Q Consensus       389 DlVIeavpe~~  399 (589)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998654

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.53  E-value=0.0077  Score=61.92  Aligned_cols=94  Identities=12%  Similarity=0.106  Sum_probs=64.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .++++|||+|.++...+..+... . -+|.+|++++++.++..+.++.       .+           -.+...++. ++
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  189 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEV  189 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHH
Confidence            36899999999999998887653 2 3899999999998875443221       11           123334555 77


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++||+|+.|++..-.+    +.  .+.+++++.|....|.
T Consensus       190 v~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        190 AHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             hcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCCC
Confidence            89999999998754432    21  1346788887665554

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.39  E-value=0.013  Score=58.43  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=53.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  382 (589)
                      -+||++||+|.+-.+.-......  |..|..+|+++++.+.+.+-+...+.  +.             .++++. .|.  
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~  185 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLD  185 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGG
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhc
Confidence            36999999999976654443333  45789999999998887543221110  11             222221 121  


Q ss_pred             --cCCCCCCEEEEecc--CChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 --SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 --~~~~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                        ..+++.|+|+.|.-  .+.+-|.+++..|.++++++++|+.
T Consensus       186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence              34688999999873  2334799999999999999998863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.38  E-value=0.0052  Score=57.70  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             EEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       311 I~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      |.|+|+ |.+|..++..|.+.|++|++..|++++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence            789997 999999999999999999999999987654

...

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.37  E-value=0.014  Score=60.69  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .++++|||+|..+...+..+.. .. -+|++|++++++.+...+++..       .+           -.+...++. ++
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  190 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA  190 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence            3679999999999888766654 23 3899999999998876554331       11           023345556 77


Q ss_pred             CCCCCEEEEeccCC---hHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIES---VPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~---~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +++||+|+-|++..   +-++.       +.+++++.|....|.
T Consensus       191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs~  227 (346)
T PRK07589        191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGGD  227 (346)
T ss_pred             HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCCC
Confidence            89999999999743   21222       346888887665553

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.36  E-value=0.0035  Score=64.51  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++++|||+|..+..-+..++. .+. +|.+|++++++.++..++++.       .+           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence            579999999999998887765 444 899999999988876554331       01           124455666 779


Q ss_pred             CCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ++||+|+.|+|..-  .+    +.  .+.+++++.|.+..+.
T Consensus       191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence            99999999997544  22    11  1357788887766554

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.36  E-value=0.11  Score=53.30  Aligned_cols=41  Identities=24%  Similarity=0.153  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence            68999999966554444444479999999999999888643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.34  E-value=0.0095  Score=62.69  Aligned_cols=41  Identities=27%  Similarity=0.239  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|||+|-||...|.+|+.+| ..|++.+|+.++.....+
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~  220 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK  220 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            68999999999999999999999 489999999998876533

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.33  E-value=0.008  Score=60.91  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            579999999999999999999997 79999999988766533

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.26  E-value=0.0079  Score=60.33  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|.|||.|.. |.++|..|.+.|..|+++.....                                      ++ +.++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence            68999999877 99999999999999998764322                                      22 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +||+||.|++.     ..++..  +.+++++++++...
T Consensus       201 ~ADIVV~avG~-----~~~i~~--~~ik~gavVIDVGi  231 (285)
T PRK14189        201 QADIVVAAVGK-----RNVLTA--DMVKPGATVIDVGM  231 (285)
T ss_pred             hCCEEEEcCCC-----cCccCH--HHcCCCCEEEEccc
Confidence            99999999982     233332  67899999887553

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.22  E-value=0.013  Score=61.80  Aligned_cols=97  Identities=16%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh-C-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL-N-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~-~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .++++|||+|.++......++. . .+ +|.+|++++++.+...+++...+.     +.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence            4789999999999999988876 3 23 899999999998876544332110     10          014445566 7


Q ss_pred             CCCCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCcEEEe
Q 007805          384 EFKDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ++++||+|+-|++..-  ..+..++.  .+.+++++.|..
T Consensus       220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~  257 (379)
T PRK06199        220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM  257 (379)
T ss_pred             HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence            7899999999985321  00111221  134667776654

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.21  E-value=0.11  Score=51.01  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             cccc-CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhc---ccCC-CCcEEEecCCCCC
Q 007805          376 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSS-QDRIIGAHFFSPA  450 (589)
Q Consensus       376 i~~~-~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~-~~r~ig~h~~~p~  450 (589)
                      +..+ +|.++++++|++|.-+|.-- ....+.+++.+++++++|| +||-+++...+..   .+++ .-.+..+||-.-|
T Consensus       129 vkVtsDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP  206 (342)
T PRK00961        129 LKVTTDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP  206 (342)
T ss_pred             ceEecCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            4444 45599999999999998432 1247888999999999987 4555555544333   3332 2245556664322


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCccc
Q 007805          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAV  494 (589)
Q Consensus       451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~  494 (589)
                      .. +.=..+.-...++|.++++.++.+..|+.++++ .+..+-|.
T Consensus       207 gt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~  250 (342)
T PRK00961        207 EM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVC  250 (342)
T ss_pred             CC-CCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhh
Confidence            21 111122334568999999999999999999998 44443333

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.20  E-value=0.032  Score=48.14  Aligned_cols=94  Identities=21%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCCCCCC
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKDVD  389 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~aD  389 (589)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+...     .+-.|..+ +....           ...+++|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~-----~~i~gd~~~~~~l~-----------~a~i~~a~   64 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV-----EVIYGDATDPEVLE-----------RAGIEKAD   64 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS-----EEEES-TTSHHHHH-----------HTTGGCES
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc-----ccccccchhhhHHh-----------hcCccccC
Confidence            579999999999999999977799999999999877533110     00011111 10000           02367899


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          390 MVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      .||.+.+++. ....+...+.+..+.-.+++-
T Consensus        65 ~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   65 AVVILTDDDE-ENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHHHTTTSEEEEE
T ss_pred             EEEEccCCHH-HHHHHHHHHHHHCCCCeEEEE
Confidence            9999987553 333443444444544455543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.17  E-value=0.015  Score=55.95  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .||.|||+|-+|+.+|..|+..|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            579999999999999999999998 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.15  E-value=0.011  Score=59.40  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  385 (589)
                      .||+|||+|.||..++..+.+. +.++. +++++.. .+...+.        ..             ..+..+++++.+ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence            5899999999999999998876 56654 3343322 1111000        00             013345555443 


Q ss_pred             CCCCEEEEeccCC
Q 007805          386 KDVDMVIEAVIES  398 (589)
Q Consensus       386 ~~aDlVIeavpe~  398 (589)
                      .+.|+|++|.|..
T Consensus        60 ~~~DvVve~t~~~   72 (265)
T PRK13303         60 QRPDLVVECAGHA   72 (265)
T ss_pred             cCCCEEEECCCHH
Confidence            5689999999843

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=96.12  E-value=0.055  Score=54.55  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++||||.|.+|+-+|.++..-|..|+.||. .+.....+             .             .+...+-.|.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence            6899999999999999999999999999985 34332221             1             1222222367889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+|-.=+|-.++.++-+-.+....++++.-|+..+-+
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG  238 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG  238 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence            99999999988887776666667778888776544434

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.11  E-value=0.012  Score=63.84  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            379999999999999999999999999999999987764

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.10  E-value=0.029  Score=60.39  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      .++|.|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4689999999999999999999999999999887644

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.05  E-value=0.22  Score=48.96  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             cccc-CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCC-CCcEEEecCCCCC
Q 007805          376 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-QDRIIGAHFFSPA  450 (589)
Q Consensus       376 i~~~-~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~-~~r~ig~h~~~p~  450 (589)
                      +..+ +|.++++++|++|.-+|.-- ....+.+++.+++++++||+ ||-+++..   .+.+.+++ .-.+..+||-.-|
T Consensus       127 vkVtsDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP  204 (340)
T TIGR01723       127 LKVTTDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP  204 (340)
T ss_pred             ceEecCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence            4444 45599999999999998532 12478889999999999874 55555544   33333432 2345566764333


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCC
Q 007805          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG  491 (589)
Q Consensus       451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~G  491 (589)
                      ..-.-+-++ ....++|.++++.++.+..|+.++++ .+..+
T Consensus       205 gt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~PA~Lvs  245 (340)
T TIGR01723       205 EMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMPANLLG  245 (340)
T ss_pred             CCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence            221222233 34568999999999999999999998 34333

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.01  E-value=0.018  Score=59.81  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      ++|.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            579999999999999999999998 899999975

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.96  E-value=0.027  Score=45.94  Aligned_cols=32  Identities=34%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEEEEeC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV  339 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d~  339 (589)
                      -++++|+|.|.+|.+++..+... +.+|.+||+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            36899999999999999999998 678999986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.95  E-value=0.018  Score=57.41  Aligned_cols=98  Identities=22%  Similarity=0.286  Sum_probs=66.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -.||.|||.|..|.--|+...--|-+|++.|+|.+++.+....         -.+++.        -+.+...++ +.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------f~~rv~--------~~~st~~~iee~v~  230 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------FGGRVH--------TLYSTPSNIEEAVK  230 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------hCceeE--------EEEcCHHHHHHHhh
Confidence            3689999999999999998887889999999999988774221         111100        011111223 6789


Q ss_pred             CCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      .+|+||-+|  |-.. .-+-+.++..+.++|+.+|++..
T Consensus       231 ~aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         231 KADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             hccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEEE
Confidence            999999877  3211 11234567777889999887643

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.94  E-value=0.011  Score=63.16  Aligned_cols=69  Identities=19%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|.|||+|-||..++..|+..|. ++++++|+.++.+...+.+.        .+.            ....+++ +.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~~------------~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NAS------------AHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CCe------------EecHHHHHHHhc
Confidence            679999999999999999999996 79999999887655422111        010            1111222 5678


Q ss_pred             CCCEEEEeccC
Q 007805          387 DVDMVIEAVIE  397 (589)
Q Consensus       387 ~aDlVIeavpe  397 (589)
                      ++|+||-|++.
T Consensus       242 ~aDiVI~aT~a  252 (414)
T PRK13940        242 KADIIIAAVNV  252 (414)
T ss_pred             cCCEEEECcCC
Confidence            89999999863

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.93  E-value=0.026  Score=58.74  Aligned_cols=106  Identities=14%  Similarity=0.042  Sum_probs=57.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~  384 (589)
                      .||+|+|+|.||..++..+... +++|+ +.|.+++..+...++..  ++.   .+... .... -.-..+....++ +.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G--~~~---~~~~~-~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKG--YPL---YVADP-EREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcC--CCc---cccCc-cccccccCCceEEcCChhHh
Confidence            5899999999999999988764 56766 45666544443222100  000   00000 0000 000123334444 44


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +.++|+||+|.|....  .+...   .+++.++.++++++.
T Consensus        76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence            5789999999985443  33333   334445666666653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.92  E-value=0.023  Score=57.42  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|. .|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999997433221                                     22478


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||-|++-..     .+.  .+.+++++++++..
T Consensus       203 aDIvI~AtG~~~-----~v~--~~~lk~gavViDvg  231 (283)
T PRK14192        203 ADIIVGAVGKPE-----LIK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             CCEEEEccCCCC-----cCC--HHHcCCCCEEEEEE
Confidence            999999995222     111  13478888887543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.87  E-value=0.055  Score=49.70  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      ++|.|||.|.+|...+..|.+.|++|++++.+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            68999999999999999999999999999643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.87  E-value=0.036  Score=60.45  Aligned_cols=42  Identities=24%  Similarity=0.104  Sum_probs=37.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      -.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            378999999999999999988899999999999999888643

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.86  E-value=0.0088  Score=63.61  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC-C-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCC
Q 007805          311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEF  385 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~  385 (589)
                      |.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..+.+        ....+..       ..+...+.  + +.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~   65 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL   65 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence            789999999999999999986 4 8999999999987753321        1111100       00111111  2 457


Q ss_pred             CCCCEEEEeccC
Q 007805          386 KDVDMVIEAVIE  397 (589)
Q Consensus       386 ~~aDlVIeavpe  397 (589)
                      +++|+||.|+|.
T Consensus        66 ~~~dvVin~~gp   77 (386)
T PF03435_consen   66 RGCDVVINCAGP   77 (386)
T ss_dssp             TTSSEEEE-SSG
T ss_pred             hcCCEEEECCcc
Confidence            899999999974

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.84  E-value=0.054  Score=58.87  Aligned_cols=96  Identities=22%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~  385 (589)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.++++.+...+....   ..+-.|..+            -...+  ..+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~------------~~~~L~~~~~  295 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGT------------DQELLEEEGI  295 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCC------------CHHHHHhcCC
Confidence            5889999999999999999999999999999999987765331100   000011100            00011  346


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      +++|.||.+.+++..  .-+...+...+.+..+++
T Consensus       296 ~~a~~vi~~~~~~~~--n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        296 DEADAFIALTNDDEA--NILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             ccCCEEEECCCCcHH--HHHHHHHHHHhCCCeEEE
Confidence            899999988886532  122223334445555555

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.83  E-value=0.12  Score=56.66  Aligned_cols=145  Identities=21%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCC--CchhhhhccCCCcccccchhHHHHHHHH
Q 007805           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNL   93 (589)
Q Consensus        18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (589)
                      +.-+.+.  ..+++......+.++++.+..+ .+-.|.|.-     |.|+  ++++-...     ...+.... ..+ ..
T Consensus        61 v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~  127 (493)
T PF01039_consen   61 VIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-AR  127 (493)
T ss_dssp             EEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HH
T ss_pred             EEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HH
Confidence            3334443  4789999999999999998866 345555543     3344  33332110     01111212 222 33


Q ss_pred             HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (589)
Q Consensus        94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~  172 (589)
                      +.. ..|+|+++.|.|.|||..++..||++|+.++ +.+++.           |.         . ..+ ..+|+.++.+
T Consensus       128 ~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP---------~-vv~-~~~Ge~~~~~  184 (493)
T PF01039_consen  128 LSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GP---------R-VVE-SATGEEVDSE  184 (493)
T ss_dssp             HHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------TH---------H-HHH-HHHSSCTSHH
T ss_pred             Hhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cc---------c-ccc-cccCccccch
Confidence            555 9999999999999999999999999999987 776532           11         1 111 3457888877


Q ss_pred             HH-------HHcCCcceecCch-HHHHHHHHHHH
Q 007805          173 EG-------WKLGLIDAVVTSE-ELLKVSRLWAL  198 (589)
Q Consensus       173 ~A-------~~~Glv~~vv~~~-~l~~~a~~~a~  198 (589)
                      +.       ...|.+|.+++++ +..+.++++..
T Consensus       185 ~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls  218 (493)
T PF01039_consen  185 ELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS  218 (493)
T ss_dssp             HHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence            64       4679999999765 33344444443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.79  E-value=0.047  Score=61.45  Aligned_cols=97  Identities=20%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (589)
                      .+|.|+|.|.+|..++..|.++|++|+++|.|+++++.+.+.     ...+-.|..+..            +.+  ..++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQL------------ELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCH------------HHHHhcCCc
Confidence            589999999999999999999999999999999998875321     000001111100            001  2368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||.||.+++++.. ...+...+.+..++-.|++-..
T Consensus       464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARAR  499 (601)
T ss_pred             cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeC
Confidence            99999999986543 3344444555555555665433

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.75  E-value=0.022  Score=56.06  Aligned_cols=84  Identities=21%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             HHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805           93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (589)
Q Consensus        93 ~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~  172 (589)
                      .+.+++.|+||.|=|---+||.--..-+|.+++.+.++|+.      +.|.++++..|.--   .+|.+. -..-.++|+
T Consensus       183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita~  252 (317)
T COG0825         183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITAH  252 (317)
T ss_pred             HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCHH
Confidence            48899999999999988777766666789999999999983      56777777665443   333332 334579999


Q ss_pred             HHHHcCCcceecCc
Q 007805          173 EGWKLGLIDAVVTS  186 (589)
Q Consensus       173 ~A~~~Glv~~vv~~  186 (589)
                      +.+++|+||.|+|.
T Consensus       253 dLk~lgiID~II~E  266 (317)
T COG0825         253 DLKELGIIDGIIPE  266 (317)
T ss_pred             HHHhCCCcceeccC
Confidence            99999999999974

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.70  E-value=0.021  Score=57.29  Aligned_cols=101  Identities=21%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHh-CCCeEE-EEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      .||+|+| +|.||..++..+.+ .+++++ ++|++ ++...+-..       ...  +...        ..+..+++++.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~-------~~~--~~~~--------~gv~~~~d~~~   64 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG-------ELA--GIGK--------VGVPVTDDLEA   64 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH-------Hhc--CcCc--------CCceeeCCHHH
Confidence            4899999 69999999999886 477765 57843 332111000       000  0000        01334556644


Q ss_pred             C-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      + .++|+||++.|  ++.-.+...   ..+..+.-+++.|++...++.
T Consensus        65 l~~~~DvVIdfT~--p~~~~~~~~---~al~~g~~vVigttg~~~e~~  107 (266)
T TIGR00036        65 VETDPDVLIDFTT--PEGVLNHLK---FALEHGVRLVVGTTGFSEEDK  107 (266)
T ss_pred             hcCCCCEEEECCC--hHHHHHHHH---HHHHCCCCEEEECCCCCHHHH
Confidence            3 46899999997  433333333   334444444444446665543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.67  E-value=0.035  Score=60.34  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHH-Hh-hHhcC--------CCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV-RG-LVTRG--------KLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~-~~-~~~~g--------~~~~~~~~~~~~~i~~  378 (589)
                      .||.|+|+|.+|...+..+...|..|+++|+++++++.+.. +.... .- ..+.|        .++.+..+.....   
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~---  240 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL---  240 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH---
Confidence            78999999999999999999999999999999998777543 11000 00 00000        0111111111000   


Q ss_pred             cCCccCCCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          379 VLDYSEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       379 ~~~~~~~~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                        ..+.++++|+||.|+  |.... -+-+.++..+.++++.+|++.+.
T Consensus       241 --~~e~~~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       241 --FAAQAKEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             --HHHHhCCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEeee
Confidence              014578899999998  22211 01134455667888888876543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.66  E-value=0.064  Score=52.43  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCe---EEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~---V~~~d~~  340 (589)
                      ++|.|+|+|.+|.++|..|...|..   |+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5899999999999999999999974   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.66  E-value=0.03  Score=62.62  Aligned_cols=95  Identities=13%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (589)
                      .+|-|+|+|.+|..+|..|.+.|++|+++|.|+++.+.+.+.     ...+-.|..+..            +.+  ..++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence            689999999999999999999999999999999988776321     000011111100            001  2367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +||.|+.+++++.+.. .+...+....+.-.|++-
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR  514 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence            9999999998766533 233334444443345543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.64  E-value=0.04  Score=49.42  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|+|- ...|..+|..|.+.|..|+..+.+...++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999999986532222                                     34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.-..-++.       +.+++++++++....
T Consensus        72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~~  102 (140)
T cd05212          72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSPT  102 (140)
T ss_pred             CCEEEEecCCCCccCH-------HHcCCCCEEEEcCCC
Confidence            9999999974433333       347899998865443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.59  E-value=0.38  Score=52.83  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-+++....+.+.++++.+.++. +-+|.|.-.|+     +.+++-..    . ...+.+.+ ..  .....-..|.|++
T Consensus        95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~----~-l~~~~~~~-~~--~~~~s~~iP~Isv  160 (512)
T TIGR01117        95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD----A-LKGYGDIF-YR--NTIASGVVPQISA  160 (512)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch----h-hhhHHHHH-HH--HHHHcCCCcEEEE
Confidence            47899999999999999987664 44566653332     22221000    0 00111111 11  1123345899999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCCc-eEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-----H--H
Q 007805          105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-----W--K  176 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-----~--~  176 (589)
                      +.|.|.||+......||++|+.+++ .+++           +|...+..           .+|+.+++++.     +  .
T Consensus       161 v~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~-----------~~Ge~v~~e~lGGa~~h~~~  218 (512)
T TIGR01117       161 IMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKT-----------VTGEEVTAEQLGGAMAHNSV  218 (512)
T ss_pred             EecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHh-----------hcCcccchhhcchHHHhccc
Confidence            9999999998887899999999864 3443           11111111           34555555544     3  5


Q ss_pred             cCCcceecCch-HHHHHHHHHHHHHH
Q 007805          177 LGLIDAVVTSE-ELLKVSRLWALDIA  201 (589)
Q Consensus       177 ~Glv~~vv~~~-~l~~~a~~~a~~la  201 (589)
                      -|.+|.+++++ +..+.++++..-+-
T Consensus       219 sGv~d~~~~de~ea~~~~r~~ls~lp  244 (512)
T TIGR01117       219 SGVAHFIAEDDDDCIMLIRRLLSFLP  244 (512)
T ss_pred             cceeEEecCChHHHHHHHHHHHHhCC
Confidence            79999998554 55666666665553

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.56  E-value=0.025  Score=58.77  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .||.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            579999999999999999999999 899999874

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.52  E-value=0.038  Score=47.96  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             ceEEEEc----CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ++|+|||    -+.+|.-+...|.++|++|+.++...+.+                             ..+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58889999999999999999998764321                             12344555543


Q ss_pred             C-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      . ...|+++.++|  .+...++++++... ..+.++.
T Consensus        52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~   85 (116)
T PF13380_consen   52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL   85 (116)
T ss_dssp             CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred             CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence            4 78999999998  66677888887765 3444443

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.48  E-value=0.068  Score=54.16  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc---
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---  383 (589)
                      -||+|||+|.+|......+.+. +.++. ++|+++++......         .+.|.            -...++++   
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi------------~~~~~~ie~LL   63 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGV------------ATSAEGIDGLL   63 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCC------------CcccCCHHHHH
Confidence            5799999999999977777754 56665 78998875322111         11121            01112221   


Q ss_pred             ---CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC---------CHHHHhcccCCCCcEEEecC-----
Q 007805          384 ---EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---------DLNIVGEKTSSQDRIIGAHF-----  446 (589)
Q Consensus       384 ---~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~---------~~~~~~~~~~~~~r~ig~h~-----  446 (589)
                         ...+.|+|++|+|....  .+....   ..+.++.++++++..         ..+++.   ..+..-+...|     
T Consensus        64 ~~~~~~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA~~~PlvVP~VN~~~~~---~~~~~~iia~p~~ati  135 (302)
T PRK08300         64 AMPEFDDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPAAIGPYCVPAVNLDEHL---DAPNVNMVTCGGQATI  135 (302)
T ss_pred             hCcCCCCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCccccCCcccCcCCHHHHh---cccCCCEEECccHHHH
Confidence               23678999999984432  233333   345677788877643         222332   11211233333     


Q ss_pred             -----CCCCCCCCeeeEec-------CCCC---CHHHHHHHHHHHHHcC-----CeeEEE
Q 007805          447 -----FSPAHVMPLLEIVR-------TERT---SAQVILDLMTVGKIIK-----KVPVVV  486 (589)
Q Consensus       447 -----~~p~~~~~lveiv~-------~~~t---~~e~~~~~~~l~~~lG-----~~~v~v  486 (589)
                           ..|.....+.||+.       ++.|   =+|..+.....++.+|     |.++++
T Consensus       136 ~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~~~~~~~~g~~~~kai~~~  195 (302)
T PRK08300        136 PIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTSRAIEKVGGAARGKAIIIL  195 (302)
T ss_pred             HHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHHHHHHHhcCcccceEEEEe
Confidence                 34444456777773       2332   2566666666676654     566666

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.46  E-value=0.055  Score=50.92  Aligned_cols=88  Identities=14%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CC----
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD----  381 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----  381 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++|.+.-..-.             ..+.+.          -+.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~----------hs~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR----------HEKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc----------cccccccchhhH
Confidence            78999996 555999999999999999999876432211             000000          0001  12    


Q ss_pred             c-cCCCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      + +.++.||+||.|++-.-- ++.       +.+++++++++.....
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~  159 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK  159 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence            2 567999999999973221 233       3578999998766543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.44  E-value=0.033  Score=51.12  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+ ..|.+++..|.++|..|++.+.....++                                     +.++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            789999976 6899999999999999999987643322                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.-.--++       .+.+++++++++....
T Consensus        80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred             ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence            999999996322222       2357899998876554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.43  E-value=0.24  Score=49.73  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=37.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ..|+|+|+|..|.+.++....+|. +++.+|+|+++.+++.+
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            469999999999999999998886 89999999999988743

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.43  E-value=0.043  Score=57.28  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (589)
                      |.||+|||+ |.+|..++..+.++ +++++.+-.+.+..+...+    .... + .+..          .. ..++.  .
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~~~-~-~~~~----------~~-~~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VHPH-L-RGLV----------DL-VLEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hCcc-c-cccc----------Cc-eeecCCHH
Confidence            468999997 99999999999886 6776554333222111111    0000 0 0000          00 11112  2


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      ...++|+|+.|+|....  .++..++   ...++.|+++++....+
T Consensus        65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence            35689999999996543  3443443   34678889999877663

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.32  E-value=0.043  Score=55.26  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=37.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~  350 (589)
                      ++|.|+|+|-++.+++..|++.|. +|++++|+.++.++..+.
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            789999999999999999999995 899999999998776443

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.32  E-value=0.54  Score=52.14  Aligned_cols=151  Identities=17%  Similarity=0.144  Sum_probs=87.1

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      +.-|.+.  .-+++....+.+.++++.+.+. .+-+|.|.-.|+.+-.+ ....+.      ....+.+.+ ... ..+.
T Consensus       133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~------~~~~~g~if-~~~-~~ls  202 (569)
T PLN02820        133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFP------DRDHFGRIF-YNQ-ARMS  202 (569)
T ss_pred             EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccc------hHhHHHHHH-HHH-HHHh
Confidence            3334453  4899999999999999998765 35566665443332111 000000      000111111 111 2244


Q ss_pred             hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG  174 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A  174 (589)
                      ....|.|++|-|.|.|||......||++|++++ +.+.+           +         |+... + ..+|+.+++++.
T Consensus       203 ~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------a---------GP~vV-~-~~~Ge~v~~eeL  260 (569)
T PLN02820        203 SAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------A---------GPPLV-K-AATGEEVSAEDL  260 (569)
T ss_pred             CCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------c---------CHHHH-H-hhcCcccCHHHh
Confidence            567999999999999999999999999999864 54443           1         11111 1 134555665554


Q ss_pred             -----H--HcCCcceecCch-HHHHHHHHHHHHH
Q 007805          175 -----W--KLGLIDAVVTSE-ELLKVSRLWALDI  200 (589)
Q Consensus       175 -----~--~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (589)
                           +  .-|.+|.+++++ +..+.++++..-+
T Consensus       261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L  294 (569)
T PLN02820        261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL  294 (569)
T ss_pred             CCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence                 2  368888888665 2333444444333

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=95.30  E-value=0.018  Score=61.12  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      +||.++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL   40 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL   40 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            479999999999855 778888999999999988866664

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.29  E-value=0.026  Score=45.27  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      ||.|||+|..|.-+|..++..|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987755

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.28  E-value=0.039  Score=46.74  Aligned_cols=72  Identities=19%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Cc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~~~  386 (589)
                      ++|.|||.|.+|..=+..|++.|.+|+++..+.+..+                +            .++... .+ +.+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~   59 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD   59 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence            6899999999999999999999999999998861111                1            111111 11 5588


Q ss_pred             CCCEEEEeccCChHHHHHHHHHH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSEL  409 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l  409 (589)
                      ++|+||.|.. +..+.+.+....
T Consensus        60 ~~~lV~~at~-d~~~n~~i~~~a   81 (103)
T PF13241_consen   60 GADLVFAATD-DPELNEAIYADA   81 (103)
T ss_dssp             TESEEEE-SS--HHHHHHHHHHH
T ss_pred             hheEEEecCC-CHHHHHHHHHHH
Confidence            9999997764 566555555543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.04  Score=55.28  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=53.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-|. .|.++|..|.+.|..|+++......++                                     +.++.
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            6899999877 899999999999999999986432211                                     34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|+.- +    .++.  .+.+++++++++..
T Consensus       203 ADIvi~avG~-p----~~v~--~~~vk~gavVIDvG  231 (285)
T PRK10792        203 ADLLVVAVGK-P----GFIP--GEWIKPGAIVIDVG  231 (285)
T ss_pred             CCEEEEcCCC-c----cccc--HHHcCCCcEEEEcc
Confidence            9999999941 1    1222  15688999988754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.061  Score=58.99  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          294 KVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       294 ~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +.|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus         3 ~~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438          3 RPPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             cccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            45566566653 3457899999999999999999999999999997653

>PLN03075 nicotianamine synthase; Provisional

Probab=95.22  E-value=0.16  Score=51.31  Aligned_cols=128  Identities=15%  Similarity=0.083  Sum_probs=77.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  382 (589)
                      .++|+.||+|..|-+-...++..  +-.++.+|++++.++.+++.+...      .| +.        .++++. .|.  
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L~--------~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-LS--------KRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-cc--------CCcEEEECchhh
Confidence            47899999999776554444333  347999999999999886543210      11 00        223332 111  


Q ss_pred             --cCCCCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcc-----cCCCCcEEEecCCCCC
Q 007805          383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK-----TSSQDRIIGAHFFSPA  450 (589)
Q Consensus       383 --~~~~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~-----~~~~~r~ig~h~~~p~  450 (589)
                        ....+.|+|+..+-=  +..-|.++++.+.+.++|+.+++.-+..-.-.-+-..     ...-+.....||.+++
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v  265 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEV  265 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCc
Confidence              235688999988521  2256789999999999999988754432111111111     1122346667887764

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.16  E-value=0.056  Score=54.26  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-| ..|.++|..|.+.|..|+++......+.                                     +.++.
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            689999998 8899999999999999999865432221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.-.-     ++.  .+.+++++++++...
T Consensus       201 ADIvV~AvG~p~-----~i~--~~~vk~GavVIDvGi  230 (285)
T PRK14191        201 ADIVCVGVGKPD-----LIK--ASMVKKGAVVVDIGI  230 (285)
T ss_pred             CCEEEEecCCCC-----cCC--HHHcCCCcEEEEeec
Confidence            999999996222     222  235689998876543

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.15  E-value=0.44  Score=45.88  Aligned_cols=130  Identities=23%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|..|..=+..|++.|-+|+++..+. +.+..           +.+.+.+..         +.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence            689999999999999999999999999998775 22222           233333221         111122255667


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCCCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~~t~  465 (589)
                      +++||.|++ |.++.+.++....++    .+++ |...           .|..   ..|+.|.  ...++..-+.+.+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence            999999986 666666666654443    3332 2211           1111   2333333  344566667777777


Q ss_pred             HHHHHHHHHHHHH
Q 007805          466 AQVILDLMTVGKI  478 (589)
Q Consensus       466 ~e~~~~~~~l~~~  478 (589)
                      |-....+++-++.
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            7776666665554

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.10  E-value=0.086  Score=51.70  Aligned_cols=160  Identities=13%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-------------c
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M  375 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~  375 (589)
                      ||.|||+|-.|+.++..|+..|+ +++++|.+.=........   .+-..-.-|+-..+.+...+.             +
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQ---flf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQ---FLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccc---cCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            58999999999999999999998 788888764221111000   000000011111111111111             1


Q ss_pred             ccccCCc--cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE-ecCCCCCHHHHhcccCCCCcEEEecCCCCCCC
Q 007805          376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV  452 (589)
Q Consensus       376 i~~~~~~--~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~  452 (589)
                      +....+.  +-+++.|+||.|+- +.+. +..+.+..-..  +..++ +.+.+..- ...-..+........++..+...
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~  152 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN  152 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence            1100111  34688999999984 4443 34444433222  23333 33333221 11111121112233344444445


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHH
Q 007805          453 MPLLEIVRTERTSAQVILDLMTVGK  477 (589)
Q Consensus       453 ~~lveiv~~~~t~~e~~~~~~~l~~  477 (589)
                      .|...+-..|.+.+..+++++.++.
T Consensus       153 ~p~Cti~~~P~~~~hci~~a~~~~~  177 (234)
T cd01484         153 FPMCTIASMPRLPEHCIEWARMLQW  177 (234)
T ss_pred             CCccccCCCCCCchHHHHHHHHHHh
Confidence            5667777788888888999988875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.08  E-value=0.018  Score=61.74  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999999999999999999999875

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.06  E-value=0.12  Score=58.55  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=61.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~  385 (589)
                      -++|-|+|.|.+|..+|..|.+.|++++++|.|+++++.+.+.     ...+-.|..+..            +-+  ..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCC
Confidence            3689999999999999999999999999999999998876321     000011111100            001  246


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ++||+||.++.++. ....+...+..+.++-.|++
T Consensus       463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence            79999999996443 33344444444444444554

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.97  E-value=0.05  Score=49.02  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      ||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999773

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.91  E-value=0.18  Score=48.86  Aligned_cols=127  Identities=21%  Similarity=0.176  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---CccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~  384 (589)
                      ++|.|||.|.++..=+..|++.|.+|+++..+-. .+..           +.+.|.+            ++..   +.+.
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~d   82 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKEF   82 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChHH
Confidence            5899999999999989999999999999965532 1111           1223322            2211   1245


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE  462 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~  462 (589)
                      +.++++||.|+. |.++-+.+..    .++...+++.+......               ..|+.|.  ...+++.-+.+.
T Consensus        83 l~g~~LViaATd-D~~vN~~I~~----~a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~  142 (223)
T PRK05562         83 IKDKHLIVIATD-DEKLNNKIRK----HCDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK  142 (223)
T ss_pred             hCCCcEEEECCC-CHHHHHHHHH----HHHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence            789999999974 6655555444    34443334333221111               1233332  334555566666


Q ss_pred             CCCHHHHHHHHHHHHH
Q 007805          463 RTSAQVILDLMTVGKI  478 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~  478 (589)
                      +.+|.....++.-++.
T Consensus       143 G~sP~lar~lR~~ie~  158 (223)
T PRK05562        143 GGSPKTSVFIGEKVKN  158 (223)
T ss_pred             CcCcHHHHHHHHHHHH
Confidence            7777766666655443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.90  E-value=0.098  Score=54.80  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      +|.|+|+|.||.-.+..+...|. +|++.|+++++++.+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            79999999999998877777785 78888999999998744

>PRK06153 hypothetical protein; Provisional

Probab=94.81  E-value=0.052  Score=56.59  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            479999999999999999999998 89999876

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.79  E-value=0.085  Score=53.22  Aligned_cols=89  Identities=18%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-CC-
Q 007805          310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-  385 (589)
                      ||+|||+|.||...+..+.+ .++++. ++|+++++......         .+.|            .-...++++ .+ 
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~   61 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA   61 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence            79999999999988777664 466765 67998876332111         1112            111223332 22 


Q ss_pred             -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                       .+.|+|++|+|.....  ++.   ...+..++.+++.++
T Consensus        62 ~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekP   96 (285)
T TIGR03215        62 NPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTP   96 (285)
T ss_pred             CCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCc
Confidence             4689999999965542  222   223445666666654

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=94.78  E-value=0.1  Score=44.35  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---
Q 007805          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---  382 (589)
                      .+|.-||+|+  +.++..+++  .|.+|+.+|.+++.++.+.++...       .+.         ..++++ ..|.   
T Consensus         3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~   64 (112)
T PF12847_consen    3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGL---------SDRITFVQGDAEFD   64 (112)
T ss_dssp             CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTT---------TTTEEEEESCCHGG
T ss_pred             CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCC---------CCCeEEEECccccC
Confidence            5789999998  445555565  899999999999999998765411       110         022222 1122   


Q ss_pred             -cCCCCCCEEEEec-----cCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 -SEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 -~~~~~aDlVIeav-----pe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                       +.....|+|+..-     .-..+..+.+++++.+.++|+.+++-
T Consensus        65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence             3446789999866     11224567888999999999876653

...

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.76  E-value=0.038  Score=56.23  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~  342 (589)
                      +++.|+|+|-+|.+++..|+..|.. |++++|+++
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5789999999999999999999986 999999973

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.75  E-value=0.056  Score=54.73  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|+|+|-.+++++..|++.|. +|+++||++++.+...+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence            679999999999999999999997 79999999988776533

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.74  E-value=0.056  Score=54.16  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|++++.....++                                     +.++.
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------------------------------~~~~~  202 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------------------------------SIVRQ  202 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 66699999999999999999884422221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.     +..++.  .+.+++++++++....
T Consensus       203 ADIvIsAvG-----k~~~i~--~~~ik~gavVIDvGin  233 (284)
T PRK14177        203 ADIIVGAVG-----KPEFIK--ADWISEGAVLLDAGYN  233 (284)
T ss_pred             CCEEEEeCC-----CcCccC--HHHcCCCCEEEEecCc
Confidence            999999996     223333  3568899999876543

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.1  Score=52.29  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+ ..|.++|..+...|..|+.+..+...+.                                     +.+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence            689999988 7899999999999999999987654332                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++-.--++.       +.+++++++++....
T Consensus       196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~  226 (279)
T PRK14178        196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN  226 (279)
T ss_pred             CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence            9999999972211222       236899999876543

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.52  E-value=0.077  Score=57.10  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--------C--Ce-EEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--------N--IY-VVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--------G--~~-V~~~d~~~~~  343 (589)
                      -+|+|||+|.||..++..+.++        |  ++ +.++|+++++
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~   49 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK   49 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence            5799999999999999877553        3  34 3467888665

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.44  E-value=0.077  Score=56.04  Aligned_cols=100  Identities=14%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--  382 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--  382 (589)
                      .++||+|||+ |..|.-+...|..+ +++|+.+..+.+.-+..    ...... +..+.            .....+.  
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~-l~~~~------------~~~~~~~~~   99 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPH-LITQD------------LPNLVAVKD   99 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcc-ccCcc------------ccceecCCH
Confidence            4569999997 99999999999998 77999887754332111    000000 00010            0001111  


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      +.++++|+||.|+|..  .-.++...    +..++.|+++++....+
T Consensus       100 ~~~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl~  140 (381)
T PLN02968        100 ADFSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRLR  140 (381)
T ss_pred             HHhcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhccC
Confidence            3358899999999843  33344444    34568888998866544

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=94.43  E-value=0.12  Score=52.71  Aligned_cols=87  Identities=22%  Similarity=0.218  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +++.|.|.|-.|.++|..+...|.+|++++++|-+.-+|                        .++......-.++++.+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence            568889999999999999999999999999998764332                        23344444444778899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      |++|.|.-..-.+..+-    ...+++++|+ .|..
T Consensus       266 DifiT~TGnkdVi~~eh----~~~MkDgaIl-~N~G  296 (420)
T COG0499         266 DIFVTATGNKDVIRKEH----FEKMKDGAIL-ANAG  296 (420)
T ss_pred             CEEEEccCCcCccCHHH----HHhccCCeEE-eccc
Confidence            99999986544333333    3346777776 4554

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.39  E-value=0.13  Score=51.66  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|++++.....++                                     +.++.
T Consensus       159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~  201 (284)
T PRK14190        159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ  201 (284)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence            68999995 67799999999999999999875432221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.-.-     ++.  .+.+++++++++...
T Consensus       202 ADIvI~AvG~p~-----~i~--~~~ik~gavVIDvGi  231 (284)
T PRK14190        202 ADILIVAVGKPK-----LIT--ADMVKEGAVVIDVGV  231 (284)
T ss_pred             CCEEEEecCCCC-----cCC--HHHcCCCCEEEEeec
Confidence            999999996222     222  235789999887553

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.34  Score=52.58  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      ++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            689999999999999999999999999999985

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=94.38  E-value=0.077  Score=52.72  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             HHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHH
Q 007805          277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV  355 (589)
Q Consensus       277 ~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~  355 (589)
                      |-.-+++..+++.-...-            .=+++.|||-+.+ |.+||..|.+.++.|+++......+.          
T Consensus       137 PCTp~gi~~ll~~~~i~l------------~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~----------  194 (283)
T COG0190         137 PCTPAGIMTLLEEYGIDL------------RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA----------  194 (283)
T ss_pred             CCCHHHHHHHHHHhCCCC------------CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH----------
Confidence            444556666665554321            1167999998665 99999999999999999985432211          


Q ss_pred             HhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          356 RGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       356 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                                                 +.++.||+||.|+--     ..++.  .+.+++++++++....
T Consensus       195 ---------------------------~~~k~ADIvv~AvG~-----p~~i~--~d~vk~gavVIDVGin  230 (283)
T COG0190         195 ---------------------------SITKNADIVVVAVGK-----PHFIK--ADMVKPGAVVIDVGIN  230 (283)
T ss_pred             ---------------------------HHhhhCCEEEEecCC-----ccccc--cccccCCCEEEecCCc
Confidence                                       336889999999951     12222  4567889988876543

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.36  E-value=0.13  Score=50.30  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            579999999999999999999998 788887653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.35  E-value=0.1  Score=54.55  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc-c
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~  383 (589)
                      .||+|||+ |.+|..++..|.++ +++++ +++.+.+.-+..    ...+      +.+..     . ....+. .+. +
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEVH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHhC------ccccc-----c-CCceeecCCHHH
Confidence            37999998 99999999999977 66877 556554321111    1000      00000     0 000111 122 2


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      .++++|+||.|+|...  -.++..++.   ..++.|+++++....+
T Consensus        65 ~~~~~DvVf~alP~~~--s~~~~~~~~---~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        65 IAEDADVVFLALPHGV--SAELAPELL---AAGVKVIDLSADFRLK  105 (346)
T ss_pred             hhcCCCEEEECCCchH--HHHHHHHHH---hCCCEEEeCChhhhcC
Confidence            3358999999999554  334444443   4578888998876554

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.30  E-value=0.081  Score=53.03  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.++|..|+++......+.                                     +.++.
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~-------------------------------------~~~k~  201 (282)
T PRK14180        159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  201 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence            68999996 66799999999999999999875322111                                     33688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.     +..++.  .+.+++++++++...
T Consensus       202 ADIvIsAvG-----kp~~i~--~~~vk~gavVIDvGi  231 (282)
T PRK14180        202 ADILIVAVG-----KPNFIT--ADMVKEGAVVIDVGI  231 (282)
T ss_pred             cCEEEEccC-----CcCcCC--HHHcCCCcEEEEecc
Confidence            999999997     223333  246889999987653

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.29  E-value=0.12  Score=51.88  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+. .|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  207 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD  207 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence            6899999877 899999999999999999985422111                                     33688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.- +    .++.  .+.+++++++++..+.
T Consensus       208 ADIvv~AvG~-p----~~i~--~~~vk~gavVIDvGin  238 (287)
T PRK14176        208 ADILVVATGV-K----HLIK--ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             CCEEEEccCC-c----cccC--HHHcCCCcEEEEeccc
Confidence            9999998741 1    2221  2368899999876543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.22  E-value=0.11  Score=50.30  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      ++|+|.|+|++|..+|..|.+.|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            689999999999999999999988 566789887

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.17  E-value=0.16  Score=52.74  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             ccceEEEEcCCCCc-HHHHHHHHhCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          307 GVRKVAVIGGGLMG-SGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG-~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .+.||||||+|.++ ...+..+.+.+.   -|-++|+++++++...+..                      +.-...+++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~   59 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDL   59 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCH
Confidence            45789999999554 557777777652   4668899999877653321                      111345555


Q ss_pred             -cCCC--CCCEEEEeccCChHH
Q 007805          383 -SEFK--DVDMVIEAVIESVPL  401 (589)
Q Consensus       383 -~~~~--~aDlVIeavpe~~~~  401 (589)
                       +.++  +.|+|++|+|.+...
T Consensus        60 ~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673          60 EELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             HHHhcCCCCCEEEEcCCChhhH
Confidence             3343  379999999976654

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.16  E-value=0.089  Score=52.88  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++......++                                     +.+++
T Consensus       156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~-------------------------------------~~~~~  198 (287)
T PRK14173        156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLP-------------------------------------AVTRR  198 (287)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 66799999999999999998874322111                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.-     ..++.  .+.+++++++++....
T Consensus       199 ADIvIsAvGk-----p~~i~--~~~vk~GavVIDVGin  229 (287)
T PRK14173        199 ADVLVVAVGR-----PHLIT--PEMVRPGAVVVDVGIN  229 (287)
T ss_pred             CCEEEEecCC-----cCccC--HHHcCCCCEEEEccCc
Confidence            9999999962     22332  3468899999876543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.14  E-value=0.2  Score=53.00  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .+|.|||+|-.|+.++..|+..|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            469999999999999999999998 79999987

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.08  E-value=0.11  Score=54.61  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-.|+.++..|+..|+ +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 788998874

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=94.07  E-value=0.83  Score=44.88  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=103.4

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (589)
Q Consensus        15 v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (589)
                      ++...++-. -.-++..-.=+.+.++++.+-.+ .+.+|+++.+|+     +-.+|-.-     ...++.+.. ..+ .+
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMakts-aAl-~~  190 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAKTS-AAL-KR  190 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHHHH-HHH-HH
Confidence            455555444 24677888888899999888765 478888887653     22222000     001111111 333 55


Q ss_pred             HHhCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805           94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (589)
Q Consensus        94 l~~~~kp~iaav~G~a~GgG~-~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~  172 (589)
                      +.....|.|+.+..+..||=. .+++..|+.||-++|.+||.-.++=       -|.....++..          .=+++
T Consensus       191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aE  253 (294)
T COG0777         191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAE  253 (294)
T ss_pred             HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHH
Confidence            788899999999999998864 7999999999999988877543310       11111111111          22567


Q ss_pred             HHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       173 ~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      -.++.|+||.||+..++......+...+...+
T Consensus       254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~  285 (294)
T COG0777         254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQP  285 (294)
T ss_pred             HHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence            78899999999999998877776666655444

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=93.98  E-value=0.93  Score=46.28  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      .+|+|+|+|-+|.+-.+.....|- .++.+|+++++++.+++
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            469999999999999999888886 78999999999998743

>PRK06270 homoserine dehydrogenase; Provisional

Probab=93.97  E-value=0.14  Score=53.31  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN  330 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~  330 (589)
                      -+|+|+|+|+||..++..+.+.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999998765

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.96  E-value=0.26  Score=51.23  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh
Q 007805          309 RKVAVIGGGLMGSGIATAHIL  329 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~  329 (589)
                      -+|+|+|+|++|++++..+.+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            479999999999999998876

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.90  E-value=0.12  Score=54.52  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            479999999999999999999997 89999987

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=93.87  E-value=0.17  Score=49.41  Aligned_cols=32  Identities=28%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEE-EEeC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVV-LKEV  339 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~-~~d~  339 (589)
                      -++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3789999999999999999999999988 7777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.85  E-value=0.31  Score=49.79  Aligned_cols=146  Identities=21%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      .+|||+|+ |..|.-+...|.+..+.   +.++-...+.=++..+        +.... +         .-.....+...
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence            58999997 99999999999997553   3444333222111000        00000 0         00111133355


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee---eEecC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT  461 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv---eiv~~  461 (589)
                      .+++|+|+-|.+.+..  +++..++.   +.+++++||+|....+.=        --+-....||-+....-   -|+.+
T Consensus        64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~D--------VPLVVPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPD--------VPLVVPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCC--------CCEecCCcCHHHHHhhhhCCCEEEC
Confidence            6799999999985543  45555543   467999999998665421        11122222222111111   24544


Q ss_pred             CCC-CHHHHHHHHHHHHHcCCeeEE
Q 007805          462 ERT-SAQVILDLMTVGKIIKKVPVV  485 (589)
Q Consensus       462 ~~t-~~e~~~~~~~l~~~lG~~~v~  485 (589)
                      +++ ....+-.+.+|.+..|-.-++
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~  155 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVV  155 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEE
Confidence            444 455566777888877744443

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.85  E-value=0.14  Score=49.96  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT   47 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence            57999996 9999999999999999999999998765543

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.36  Score=47.90  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            68999996 9999999999999999999999998766554

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.81  E-value=0.16  Score=51.36  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.++|..|+++......++                                     +.++.
T Consensus       159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  201 (297)
T PRK14186        159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLA-------------------------------------SITRE  201 (297)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 66799999999999999998864322111                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.- +    .++.  .+.+++++++++....
T Consensus       202 ADIvIsAvGk-p----~~i~--~~~ik~gavVIDvGin  232 (297)
T PRK14186        202 ADILVAAAGR-P----NLIG--AEMVKPGAVVVDVGIH  232 (297)
T ss_pred             CCEEEEccCC-c----CccC--HHHcCCCCEEEEeccc
Confidence            9999999972 2    2222  3468899999876543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.79  E-value=0.15  Score=50.93  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            579999999999999999999995 899999774

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.73  E-value=0.25  Score=48.44  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|+|+|-+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            579999999999999999999998 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.73  E-value=0.16  Score=50.92  Aligned_cols=71  Identities=21%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.++|..|+++......+.                                     +.+++
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~-------------------------------------~~~~~  201 (278)
T PRK14172        159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLK-------------------------------------EVCKK  201 (278)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 66799999999999999999974422111                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|+.-.     .++.  .+.+++++++++..
T Consensus       202 ADIvIsAvGkp-----~~i~--~~~ik~gavVIDvG  230 (278)
T PRK14172        202 ADILVVAIGRP-----KFID--EEYVKEGAIVIDVG  230 (278)
T ss_pred             CCEEEEcCCCc-----CccC--HHHcCCCcEEEEee
Confidence            99999999622     2222  24588999988753

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.73  E-value=0.17  Score=50.75  Aligned_cols=72  Identities=22%  Similarity=0.285  Sum_probs=52.5

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+ ..|.++|..|.++|..|+++......+.                                     +.++.
T Consensus       158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~  200 (281)
T PRK14183        158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK  200 (281)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            689999987 7799999999999999998763321111                                     34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.     +..++.  .+.+++++++++...
T Consensus       201 ADIvV~AvG-----kp~~i~--~~~vk~gavvIDvGi  230 (281)
T PRK14183        201 ADIVIVGVG-----KPNLIT--EDMVKEGAIVIDIGI  230 (281)
T ss_pred             CCEEEEecC-----cccccC--HHHcCCCcEEEEeec
Confidence            999999996     222322  246789999887543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=93.72  E-value=0.18  Score=50.98  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++......++                                     +.+++
T Consensus       168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~-------------------------------------~~~~~  210 (299)
T PLN02516        168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPE-------------------------------------SIVRE  210 (299)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999999974322111                                     34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.-..     ++.  .+.+++++++++...
T Consensus       211 ADIvv~AvGk~~-----~i~--~~~vk~gavVIDvGi  240 (299)
T PLN02516        211 ADIVIAAAGQAM-----MIK--GDWIKPGAAVIDVGT  240 (299)
T ss_pred             CCEEEEcCCCcC-----ccC--HHHcCCCCEEEEeec
Confidence            999999996322     222  245789999886543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.69  E-value=0.12  Score=53.88  Aligned_cols=143  Identities=18%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeE---EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~  383 (589)
                      .||+|||+ |..|.-+...|.++||++   ....++.+.-+..    .      . .+           ..+...+ +..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l----~------~-~g-----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL----S------F-KG-----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee----e------e-CC-----------ceeEEeeCCHH
Confidence            58999997 999999999999988854   5554443221110    0      0 01           0111111 113


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe--eeEecC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT  461 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l--veiv~~  461 (589)
                      .++++|+||+|+|  ...-+++..++   +..+++|+++++....+. .    .|   .++.-.|+..+...  -.++..
T Consensus        60 ~~~~vDvVf~A~g--~g~s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan  126 (334)
T PRK14874         60 DFSGVDIALFSAG--GSVSKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN  126 (334)
T ss_pred             HHcCCCEEEECCC--hHHHHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence            3578999999998  43444555544   345778888887654432 0    11   23333332222110  026666


Q ss_pred             CCCCHHHHH-HHHHHHHHcCCeeEEE
Q 007805          462 ERTSAQVIL-DLMTVGKIIKKVPVVV  486 (589)
Q Consensus       462 ~~t~~e~~~-~~~~l~~~lG~~~v~v  486 (589)
                      +.+....+. .+..|.+..+-..+++
T Consensus       127 p~C~~t~~~l~l~pL~~~~~i~~i~v  152 (334)
T PRK14874        127 PNCSTIQMVVALKPLHDAAGIKRVVV  152 (334)
T ss_pred             ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence            666555444 4555666666544444

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.68  E-value=0.15  Score=51.73  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~  342 (589)
                      +++.|||+|-.+++++..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            579999999999999999999887 8999999965

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.64  E-value=0.2  Score=50.32  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.++|..|+++......++                                     +.+++
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~-------------------------------------~~~~~  200 (284)
T PRK14170        158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLP-------------------------------------QVAKE  200 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999998864322111                                     34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+.-     ..++.  .+.+++++++++...+
T Consensus       201 ADIvI~AvG~-----~~~i~--~~~vk~GavVIDvGin  231 (284)
T PRK14170        201 ADILVVATGL-----AKFVK--KDYIKPGAIVIDVGMD  231 (284)
T ss_pred             CCEEEEecCC-----cCccC--HHHcCCCCEEEEccCc
Confidence            9999999962     22222  2468899999876543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=93.62  E-value=0.65  Score=45.10  Aligned_cols=100  Identities=16%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHh-hHhcCCCCHHHHHHHhhcccc-cCCc----
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG-LVTRGKLTQDKANNALKMLKG-VLDY----  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~-~~~~----  382 (589)
                      .+|-++|+|.  +.-|..|+..|++|+.+|.++..++.+..+.  .+.. ....|...   . ..-.+++. ..|.    
T Consensus        39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~--~l~~~~~~~~~~~---~-~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFAEN--GLTPQTRQSGEFE---H-YQAGEITIYCGDFFALT  110 (218)
T ss_pred             CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHHHc--CCCcccccccccc---c-cccCceEEEECcccCCC
Confidence            4899999998  5677788999999999999999998753210  0000 00000000   0 00012221 1222    


Q ss_pred             -cCCCCCCEEEE-----eccCChHHHHHHHHHHHHhCCCCcE
Q 007805          383 -SEFKDVDMVIE-----AVIESVPLKQKIFSELEKACPPHCI  418 (589)
Q Consensus       383 -~~~~~aDlVIe-----avpe~~~~k~~v~~~l~~~~~~~~i  418 (589)
                       +.....|+|++     ++|  ++....+++.+...++|+..
T Consensus       111 ~~~~~~fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG~  150 (218)
T PRK13255        111 AADLADVDAVYDRAALIALP--EEMRERYVQQLAALLPAGCR  150 (218)
T ss_pred             cccCCCeeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCCe
Confidence             11234578884     444  67788899999999999853

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.62  E-value=0.17  Score=50.30  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             CccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH
Q 007805          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  353 (589)
Q Consensus       306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~  353 (589)
                      +..+++.|-|+ +-+|..+|..|+++|++|+++.|+.++++...+++++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            45678999997 8899999999999999999999999999987766553

>PLN00016 RNA-binding protein; Provisional

Probab=93.59  E-value=0.15  Score=54.02  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             ccceEEEE----cC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       307 ~~~kI~II----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      .+++|.|+    |+ |.+|..++..|++.||+|++.+++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            45789999    75 999999999999999999999998765

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.58  E-value=0.13  Score=51.82  Aligned_cols=39  Identities=21%  Similarity=0.021  Sum_probs=34.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|-.+.+++..|++.|. +|++++|++++.+..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            479999999999999999999997 699999999877654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.55  E-value=0.18  Score=46.79  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             ccceEEEEcCCCCcHHHHHH-HH-hCCCeEE-EEeCChHHHH
Q 007805          307 GVRKVAVIGGGLMGSGIATA-HI-LNNIYVV-LKEVNSEYLL  345 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~  345 (589)
                      .+-+|.|||+|++|.+++.. +. +.|++++ ++|.+++.+-
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG  124 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG  124 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhC
Confidence            46789999999999999964 33 5677654 8899998643

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.52  E-value=0.18  Score=50.56  Aligned_cols=72  Identities=17%  Similarity=0.292  Sum_probs=52.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++......++                                     +.+++
T Consensus       157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~-------------------------------------~~~~~  199 (282)
T PRK14169        157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLK-------------------------------------QLTKE  199 (282)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999998864322111                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.-     ..++.  .+.+++++++++...
T Consensus       200 ADIvI~AvG~-----p~~i~--~~~vk~GavVIDvGi  229 (282)
T PRK14169        200 ADILVVAVGV-----PHFIG--ADAVKPGAVVIDVGI  229 (282)
T ss_pred             CCEEEEccCC-----cCccC--HHHcCCCcEEEEeec
Confidence            9999999962     22322  246889999887553

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.49  E-value=0.032  Score=56.25  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      ||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            68999999999999999999998 78888854

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK05868 hypothetical protein; Validated

Probab=93.46  E-value=0.057  Score=57.10  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      |++|.|||+|.-|.+.|..|+++|++|+++|+.++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            578999999999999999999999999999988653

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.46  E-value=0.12  Score=53.35  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      ||.|+|+ |.+|+.++..|.++||+|++.+|+++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            7999996 9999999999999999999999997643

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.45  E-value=0.19  Score=50.45  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++......++                                     +.++.
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~-------------------------------------~~~~~  200 (282)
T PRK14166        158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  200 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999998875432221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|+.-     ..++.  .+.+++++++++..
T Consensus       201 ADIvIsAvGk-----p~~i~--~~~vk~GavVIDvG  229 (282)
T PRK14166        201 ADLIIVAAGC-----VNLLR--SDMVKEGVIVVDVG  229 (282)
T ss_pred             CCEEEEcCCC-----cCccC--HHHcCCCCEEEEec
Confidence            9999999962     22322  24688999998754

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=93.43  E-value=0.82  Score=44.25  Aligned_cols=103  Identities=16%  Similarity=0.037  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC---
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE---  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---  384 (589)
                      .+|-++|+|.  +.-|..|+++|++|+.+|.++..++.+.++...... ....+...   .. .-.++++ ..|...   
T Consensus        36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~-~~~~~~~~---~~-~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT-VTQQGEFT---RY-RAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc-eeccccce---ee-ecCceEEEEccCCCCCc
Confidence            4899999998  577788899999999999999998875221000000 00000000   00 0011221 222211   


Q ss_pred             --CCCCCEEEEec---cCChHHHHHHHHHHHHhCCCCcE
Q 007805          385 --FKDVDMVIEAV---IESVPLKQKIFSELEKACPPHCI  418 (589)
Q Consensus       385 --~~~aDlVIeav---pe~~~~k~~v~~~l~~~~~~~~i  418 (589)
                        ...-|.|+++.   .=.++....+++.+...++|+..
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence              12347777642   11256677889999999999864

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=93.43  E-value=0.068  Score=57.28  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +|.|||+|.+|.++|..|+++|++|+++|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999754

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.42  E-value=0.48  Score=51.98  Aligned_cols=166  Identities=17%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.=|+|..  -+++++-.+...+.++.++.. ++-.|.|.-. +.|..|-+-.          .....+...+++ .++.
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~  364 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA  364 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence            34456643  379999999999999999874 5666766533 3354444322          112234444666 7789


Q ss_pred             hCCCcEEEEeCCcccchhhHHhhhc----CEEEEeCCceEeccccccCCCCChhhhhhHhhhc-------C--HHH-HHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIE  161 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala~----D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~-------G--~~~-a~~  161 (589)
                      +++.|+|..|-|.++|||..-....    |+++|.++++++       .+++-++...+-+.-       |  ... ..+
T Consensus       365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~  437 (493)
T PF01039_consen  365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE  437 (493)
T ss_dssp             HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred             cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence            9999999999999999887544444    788777776665       544444443332211       1  000 011


Q ss_pred             HH-H-cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc
Q 007805          162 MM-L-LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (589)
Q Consensus       162 l~-l-tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (589)
                      .+ - .-+..++..+.+.|++|.|+++.+...........+.++
T Consensus       438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~  481 (493)
T PF01039_consen  438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK  481 (493)
T ss_dssp             HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence            11 1 112258899999999999999999877666666554444

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK07877 hypothetical protein; Provisional

Probab=93.36  E-value=0.15  Score=58.06  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~  341 (589)
                      .+|+|||+| .|+.+|..|+..|.  +++++|.+.
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            579999999 89999999999995  888988763

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.32  E-value=0.18  Score=49.97  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .||.|||+|-.|+.++..|+..|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999997 788888763

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.31  E-value=0.22  Score=50.15  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.+.|..|+++......+.                                     +.++.
T Consensus       160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~-------------------------------------~~~~~  202 (288)
T PRK14171        160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLS-------------------------------------SITSK  202 (288)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999998874321111                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|+.-.     .++.  .+.+++++++++..
T Consensus       203 ADIvV~AvGkp-----~~i~--~~~vk~GavVIDvG  231 (288)
T PRK14171        203 ADIVVAAIGSP-----LKLT--AEYFNPESIVIDVG  231 (288)
T ss_pred             CCEEEEccCCC-----CccC--HHHcCCCCEEEEee
Confidence            99999999622     2222  24688999988654

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.27  E-value=0.22  Score=49.09  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-----------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-  376 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-  376 (589)
                      .||.|||+|-.|+.++..|++.|           .+++++|.+.=........   .+. ...-|+-..+.....+..+ 
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ---lf~-~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ---AFY-PADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc---cCC-hhHCCcHHHHHHHHHHHhcc
Confidence            57999999999999999999864           2889999764221111100   000 0112222222222222211 


Q ss_pred             ----cccCC----ccCCCCCCEEEEeccCChHHHHHHHHHHHH
Q 007805          377 ----KGVLD----YSEFKDVDMVIEAVIESVPLKQKIFSELEK  411 (589)
Q Consensus       377 ----~~~~~----~~~~~~aDlVIeavpe~~~~k~~v~~~l~~  411 (589)
                          .....    .+.+.++|+||.|+- +...+..+.+....
T Consensus        88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~  129 (244)
T TIGR03736        88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG  129 (244)
T ss_pred             CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                11110    123567899999994 66666666666544

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.26  E-value=0.13  Score=56.21  Aligned_cols=39  Identities=28%  Similarity=0.270  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      .-..++|.|+|+|..|.++|..|.+.|++|+++|+++..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            345578999999999999999999999999999987543

>PRK07236 hypothetical protein; Provisional

Probab=93.18  E-value=0.087  Score=55.96  Aligned_cols=37  Identities=24%  Similarity=0.075  Sum_probs=33.8

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |+..+|.|||+|.-|.+.|..|++.|++|+++|+.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4557899999999999999999999999999998864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.16  E-value=0.17  Score=50.04  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~  342 (589)
                      .||.|+|+|-+|+.+|..|+..|. +++++|.+.-
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            579999999999999999999997 7888887643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.14  E-value=0.055  Score=59.87  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            579999999999999999999998 78888864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.13  E-value=0.27  Score=49.79  Aligned_cols=72  Identities=15%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHh----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      ++|.|||- ...|.++|..|.+    .|..|+....+...++                                     +
T Consensus       160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~-------------------------------------~  202 (295)
T PRK14174        160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIP-------------------------------------S  202 (295)
T ss_pred             CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHH-------------------------------------H
Confidence            68999996 5669999999987    6889998886654332                                     3


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      .++.||+||-|++-.     .++.  .+.+++++++++...
T Consensus       203 ~~~~ADIvI~Avg~~-----~li~--~~~vk~GavVIDVgi  236 (295)
T PRK14174        203 YTRQADILIAAIGKA-----RFIT--ADMVKPGAVVIDVGI  236 (295)
T ss_pred             HHHhCCEEEEecCcc-----CccC--HHHcCCCCEEEEeec
Confidence            367899999999632     2222  234689999887553

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=93.11  E-value=0.18  Score=51.36  Aligned_cols=40  Identities=28%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      ..++|+|-|+ |.+|+.|...|+++||.|...-|+++..+.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~   45 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK   45 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh
Confidence            4578999997 999999999999999999999999887433

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.10  E-value=0.081  Score=41.06  Aligned_cols=30  Identities=27%  Similarity=0.290  Sum_probs=27.0

Q ss_pred             EEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       313 IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |||+|.-|.+.|..|++.|++|+++|.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998743

...

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=93.09  E-value=1.6  Score=48.41  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=98.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -+++.+-.+...+.++.++.- ++-+|-|.-. +.|..|.+-+.          .-..+...+++ .++.....|.|++|
T Consensus       380 g~l~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~G~~~~~a~l~-~A~a~~~VP~isvi  446 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQR-GIPLLFLQNI-TGFMVGSRSEA----------SGIAKAGAKMV-MAVACAKVPKITII  446 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHhc-CCCEEEEEEC-CCCCCCHHHHH----------hhHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            468888888889988888753 5666666433 33666654332          11233344555 67889999999999


Q ss_pred             CCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-c------------CHHHHH-HH--HHc
Q 007805          106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V------------GLSKAI-EM--MLL  165 (589)
Q Consensus       106 ~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~------------G~~~a~-~l--~lt  165 (589)
                      =|.|+|+|..-+.    ..|++++.+++       .+|.++.-++...+.+. +            -...+. +.  -..
T Consensus       447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (569)
T PLN02820        447 VGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY  519 (569)
T ss_pred             ECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence            9999998765443    55676666555       45566655555544331 1            111111 11  112


Q ss_pred             CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      -+..++-.|-+.|+||.|++|.+.........+....
T Consensus       520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~  556 (569)
T PLN02820        520 EREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALN  556 (569)
T ss_pred             HHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhc
Confidence            2355778889999999999998877665555544433

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.04  E-value=0.26  Score=49.43  Aligned_cols=72  Identities=13%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||- ...|.++|..|.++|..|+++......++                                     +.++.
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~-------------------------------------~~~~~  200 (282)
T PRK14182        158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLA-------------------------------------GEVGR  200 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence            68999996 56699999999999999998864322111                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.|+.- +    .++.  .+.+++++++++...
T Consensus       201 ADIvI~AvGk-~----~~i~--~~~ik~gaiVIDvGi  230 (282)
T PRK14182        201 ADILVAAIGK-A----ELVK--GAWVKEGAVVIDVGM  230 (282)
T ss_pred             CCEEEEecCC-c----CccC--HHHcCCCCEEEEeec
Confidence            9999999962 2    2222  246889999887543

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.03  E-value=1.3  Score=45.41  Aligned_cols=45  Identities=20%  Similarity=0.202  Sum_probs=37.1

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .-+++.|.|+ +-+|..+|..|++.|++|++.++++++.+++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l   58 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI   58 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3467778886 77899999999999999999999998877665443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.99  E-value=1.3  Score=43.07  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .++|.|.|+ |.+|..++..|+++|++|++++++++..+..
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            468999996 9999999999999999999999998766543

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=92.96  E-value=0.37  Score=51.53  Aligned_cols=163  Identities=13%  Similarity=0.071  Sum_probs=79.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc------cc
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK  377 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------i~  377 (589)
                      ||.|||+|-+|+.++..|+..|+      +++++|.+.=.......   +.+-..-.-|+-..+.+...+..      +.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnR---QfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNR---QFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCc---CccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999999998      89999976432111100   00000001111111111111111      11


Q ss_pred             ccC--------C---ccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 007805          378 GVL--------D---YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (589)
Q Consensus       378 ~~~--------~---~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~  446 (589)
                      ...        +   .+-+++.|+||.|+- +++.+..+-+....+-  -.+|-+.+.+..-. ..-..+.....-....
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G~-v~v~iP~~te~y~~~~  153 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKGN-TQVVIPHLTESYSSSR  153 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEecccceeE-EEEEeCCCCCCccCCC
Confidence            100        0   122577899999984 4554443333322221  12333433332111 1111111001111122


Q ss_pred             CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc
Q 007805          447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKII  479 (589)
Q Consensus       447 ~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l  479 (589)
                      ..+....|...+-..|...+..+++++.+++.+
T Consensus       154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l  186 (435)
T cd01490         154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL  186 (435)
T ss_pred             CCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence            223334566667777888888999999987764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=92.93  E-value=0.25  Score=42.96  Aligned_cols=52  Identities=8%  Similarity=0.028  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHH-h-hhccCCC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVP  296 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~-~-r~~~~~~  296 (589)
                      ..+.+.++++...++.+.++.|...-..++..+|+.|||++-+= | +.|+|.|
T Consensus        49 ~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p  102 (118)
T PF13766_consen   49 KVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP  102 (118)
T ss_dssp             HHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence            35567888999999999999999999999999999999999874 3 5566655

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.90  E-value=0.27  Score=49.42  Aligned_cols=72  Identities=18%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ++|.|||- +..|.++|..|.+  ++..|+++......++                                     +.+
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~-------------------------------------~~~  201 (284)
T PRK14193        159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLA-------------------------------------AHT  201 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHH-------------------------------------HHH
Confidence            68999996 6779999999998  6889998875422111                                     346


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +.||+||.|+.-.     .++.  .+++++++++++...
T Consensus       202 k~ADIvV~AvGkp-----~~i~--~~~ik~GavVIDvGi  233 (284)
T PRK14193        202 RRADIIVAAAGVA-----HLVT--ADMVKPGAAVLDVGV  233 (284)
T ss_pred             HhCCEEEEecCCc-----CccC--HHHcCCCCEEEEccc
Confidence            7899999999622     2222  246889999887553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	589
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		7e-70
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		9e-70
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		4e-69
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-59
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		8e-38
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		1e-35
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		2e-30
3had_A	308	Biochemical Characterization And Structure Determin		8e-30
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		1e-29
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		2e-29
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		2e-29
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		2e-29
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		2e-29
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		3e-29
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		4e-29
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-29
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		5e-29
2hdh_A	293	Biochemical Characterization And Structure Determin		4e-22
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		6e-22
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-17
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-15
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		3e-15
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		3e-15
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-15
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		7e-15
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		7e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		7e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		8e-15
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-14
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		4e-14
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		6e-14
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		7e-14
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-12
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		5e-12
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		3e-11
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		7e-11
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		9e-11
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-10
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		1e-10
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		2e-10
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		2e-10
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-10
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-10
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		2e-09
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-09
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		3e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		5e-09
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		5e-09
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		8e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		1e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-08
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-08
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		7e-08
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-07
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		1e-07
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-07
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		2e-07
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		5e-07
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		6e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		1e-06
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-06
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		4e-06
4hc8_A	255	Crystal Structure Of Probable Enoyl-Coa Hydratase E		6e-06
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		6e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		7e-06
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		8e-06
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		9e-06
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-05
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		1e-05
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-05
1wz8_A	264	Crystal Structure Of Probable Enoyl-Coa Dehydratase		3e-05
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-05
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		5e-05
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		5e-05
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		8e-05
3r6h_A	233	Crystal Structure Of An Enoyl-Coa Hydratase (Echa3)		1e-04
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-04
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		2e-04
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		2e-04
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-04
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		3e-04
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		3e-04
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		4e-04
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		4e-04
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		5e-04
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-04
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		7e-04
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		7e-04

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/584 (56%), Positives = 423/584 (72%), Gaps = 9/584 (1%)
Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                 NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLF 582
           VA AT+ +F + F +R+++S ++ L+ +  R G    KGF +L+
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF-YLY 588

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  261 bits (667), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 184/583 (31%), Positives = 285/583 (48%), Gaps = 41/583 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGNK 576
                   T        P R    S  SPL D+L ++GR G K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQK 593

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  261 bits (667), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 184/583 (31%), Positives = 285/583 (48%), Gaps = 41/583 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 16  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 72
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 73  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 127
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 128 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 187
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 188 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 237
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 238 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 297
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 298 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 356
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 357 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 415
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 416 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 475
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 476 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 535
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGNK 576
                   T        P R    S  SPL D+L ++GR G K
Sbjct: 536 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQK 578

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  258 bits (660), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 183/583 (31%), Positives = 284/583 (48%), Gaps = 41/583 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
            +TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 AVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGNK 576
                   T        P R    S  SPL D+L ++GR G K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQK 593

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/547 (28%), Positives = 259/547 (47%), Gaps = 16/547 (2%)
Query: 49  VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-DVSVELVVNLIEDCKKPIXXXXXX 107
           VK ++++     F  G DI  F +     D  L+  ++    + +  ED   P       
Sbjct: 53  VKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAING 112
Query: 108 XXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167
                     +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K
Sbjct: 113 IALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGK 172
Query: 168 SITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              +E+  K+  +DAVVT++       +L+K +    LD  A+R+P +  L    KL ++
Sbjct: 173 ENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL----KLNAI 228
Query: 221 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSR 280
            +           A +  PN P     +  I++    G    +  EA  F +L     S 
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASN 288
Query: 281 GLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340
            L+ +F   +   K   V D   K   V++ AV+G G+MG GIA         +++K++N
Sbjct: 289 CLIGLFLNDQELKKKAKVYDKIAKD--VKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 346
Query: 341 SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400
              + +G+      + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  
Sbjct: 347 EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 401 LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR 460
           +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 461 TERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDS 520
            E++S   +   +              +C GF VNR  FPY      LVS GVD  RID 
Sbjct: 467 GEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDK 526
Query: 521 AIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGNKGF 578
            +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G K  
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNG 586
Query: 579 SFLFVFS 585
              + + 
Sbjct: 587 KGFYAYE 593

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  155 bits (391), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/273 (36%), Positives = 144/273 (52%), Gaps = 4/273 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L               
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIRS-FGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P YS++ R L         ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 545 ATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGNK 576
            T   F+  + +R F   LV   L+  GR G K
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKK 277

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 145/312 (46%), Gaps = 16/312 (5%)
Query: 279 SRGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVV 335
           ++ L + FFA+++ +K    +    K    + V  V V+G G MG GIA +     I VV
Sbjct: 5   AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
Query: 336 LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 395
             E + + L    K I   +    +R    Q+   +A   L+      E   VD+V+EAV
Sbjct: 65  AVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAV 122
Query: 396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 455
            E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182
Query: 456 LEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDV 515
           LE++ +  +S   I  +M+             NC GF  NR   PY      L+  G   
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 242
Query: 516 FRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLV 564
             +D  +  FG  +GPF++ DLAG  V          T        P R    S  SPL 
Sbjct: 243 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 302
Query: 565 DLLLKSGRNGNK 576
           D+L ++GR G K
Sbjct: 303 DMLCEAGRFGQK 314

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 7/272 (2%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VA+IGGG MG  +A    L  I   L   N +   + ++ + A  +          +
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIE 113
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           K N  LK+     D+ +  + D+++E+VIE + LK+++F+ LE  C   CI  TNTS++D
Sbjct: 114 KINANLKITS---DFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           LN +         ++G HFF+PA+V+ L+EI+    TS+Q I                  
Sbjct: 171 LNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG 230
Query: 488 NCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 546
           NC  F  NR    Y  QS +L+   G    +ID  I +FG  +GP  + D+ G+ V    
Sbjct: 231 NCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKL 290
Query: 547 SKEFDKAFPDRSFQSPLVDLLLKSGRNGNKGF 578
            KE          +  +   L + GR  NKGF
Sbjct: 291 KKE--NGLEPNPIEKEMWR-LKRYGRKTNKGF 319

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT+++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA+++++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+++++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 8/240 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  +M L+E+V+T  TS + +  L+        
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAG 539
                 +  GF VNR   PY  ++ RL          ID+A++   G P+GPF+LLD  G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT ++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 125/282 (44%), Gaps = 37/282 (13%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            D +A+ TL + P NA +  +   + +  ++    D+++ +V+ G G  FS G DI  F 
Sbjct: 13  EDHIAVATLNHAPANAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFT 72
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
            V  A   + +  +  ++    +E C KP+                  CH R A    +L
Sbjct: 73  SVTEAKQATELAQLG-QVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPELTLG+IPGF GTQRLPR VG +KA E  L S  IT  E  K GL++ V   E  L 
Sbjct: 132 GLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLD 191
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVI 251
            +   A  IA +               S + AR VL+L  LQ  K++             
Sbjct: 192 DTLKVAKQIAGK---------------SPATARAVLEL--LQTTKSSHY----------- 223
Query: 252 EEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293
                   Y GV +EA++F E+   +  R  V  F  +R  S
Sbjct: 224 --------YEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS 257

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF V+R   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 G 539
           G
Sbjct: 254 G 254

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 25  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIAT 79
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 80  STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTR 139
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 140 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 199
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAG 539
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G
Sbjct: 200 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVG 243

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 58  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 112
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 113 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTR 172
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 173 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 232
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAG 539
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G
Sbjct: 233 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVG 276

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 13/203 (6%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I L  P  +NAL   + A + D   +  +  ++ AIV+TG+   F+ G DI     
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEM-- 76
Query: 73  VHGAGDVSLMPDVSVELVV----NLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
                 V+L P  + E  +    + +   +KPI                M C   IAA  
Sbjct: 77  ------VTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT 130
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL+  +V + +
Sbjct: 131 ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD 190
Query: 189 LLKVSRLWALDIAARRKPWIRSL 211
           LL  +   A  IA   +P  R++
Sbjct: 191 LLDEALAVAQRIARMSRPAGRAV 213

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   + 
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK 74
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             A  ++   D   +L   L +   KP+                + C   +A    + GL
Sbjct: 75  DLAATLN---DTRPQLWARL-QAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGL 130
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V  S+  L+  
Sbjct: 131 PEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLE-- 188
Query: 194 RLWALDIA---ARRKP 206
             +AL +A   AR  P
Sbjct: 189 --YALQLASKMARHSP 202

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 71
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 72  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 129 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 188
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 189 EARATATTIS 198

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 70
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 71  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 127
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 187
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 188 EARATATTIS 197

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 91
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 92  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 148
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 149 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 208
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 209 EARATATTIS 218

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLT 365
           G+  V V+G G++GS IA     +   V   ++N++ L    K  E    GL     K  
Sbjct: 3   GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFE----GLAAVYEKEV 58
Query: 366 QDKANNALKMLKGVLDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
              A+ A +   G + YS+      KD D+VIEAV ES+ LK+ I+++L +  P   I A
Sbjct: 59  AGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118
Query: 421 TNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXX 479
           TN+ST +  ++VG  T   D+ +  HF +   V    E++ T +T  +V   ++      
Sbjct: 119 TNSSTLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAI 177
Query: 480 XXX-XXXXXNCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLD 536
                       G+ +N    P    +A LLV    D   ID   R   G P GPF++ D
Sbjct: 178 GMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFD 237
Query: 537 LAG 539
           + G
Sbjct: 238 IVG 240

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 74  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 125 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 185 VETLVEEAIQCAEKIANNSK 204

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 12  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 71
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 72  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 122
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 123 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 182
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 183 VETLVEEAIQCAEKIANNSK 202

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 15  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 74
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 75  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 125
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 126 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 185
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 186 VETLVEEAIQCAEKIANNSK 205

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI    K 
Sbjct: 15  VGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK- 73
Query: 74  HGAGDVSLMPDVSVEL-VVNLIEDC------KKPIXXXXXXXXXXXXXXXXMGCHARIAA 126
                     D  + L  +N   D       K P+                + C   +A+
Sbjct: 74  ----------DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVAS 123
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
              + G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+ 
Sbjct: 124 SAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP 183
Query: 187 EELLK 191
           E L++
Sbjct: 184 ELLME 188

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGV ++TL  P  +NA+   ++  L    +E     +V+A++LTG G  FS G D+  F
Sbjct: 7   QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF 66
Query: 71  QKVHGAGDVSLMPDVSVEL-----VVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                 GD    PD    L     VV  +   +KP+                +    R+A
Sbjct: 67  ------GDRK--PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLA 118
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A         + +G++P  G +  LPRLVGL+KA E++LLS  +++EE   LGL+  VV 
Sbjct: 119 AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVP 178
Query: 186 SEELLKVSRLWALDIA 201
           +E+L++ +   A ++A
Sbjct: 179 AEKLMEEALSLAKELA 194

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 41  EEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCK 98
           EEA +R     ++LTG G + F  G D+   ++  G  +  +   VS +      +E   
Sbjct: 50  EEANTR----VVILTGAGEKAFCAGADL---KERAGXNEEQVRHAVSXIRTTXEXVEQLP 102
Query: 99  KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158
           +P+                + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +
Sbjct: 103 QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 162
Query: 159 AIEMMLLSKSITSEEGWKLGLIDAVV 184
           A E++   + I+++E  + GL++ VV
Sbjct: 163 AKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   
Sbjct: 40  NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEM 99
Query: 71  QKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           Q      ++S     S + + +   +   KKP+                M C    A  K
Sbjct: 100 Q------NLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEK 153
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            Q   PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E 
Sbjct: 154 AQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVET 213
Query: 189 LLKVSRLWALDIAARRK 205
           L++ +   A  IA+  K
Sbjct: 214 LVEEAIQCAEKIASNSK 230

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 114/258 (44%), Gaps = 28/258 (10%)
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KV VIG GL G GIA A I +   VVL++V+        K +EA  R  +    L++ + 
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSE-------KALEA-AREQIPEELLSKIEF 64
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
              L+ +K         D D+V EAV E +  K ++  E+E+    +  L +NTS I ++
Sbjct: 65  TTTLEKVK---------DCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNC 489
            + E+  S  R +G H+ +P HV PL+EIV +  T ++ +  +                C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 490 TGFA-VNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQLLDLAGYGVAA 544
            G + VNR        A   +  GV    +D   +   GL     GP   LD  G  VA 
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAY 230
Query: 545 ATSKEFDKAFPDRSFQSP 562
             S    K F D  F+ P
Sbjct: 231 YASLYLYKRFGDEKFKPP 248

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 9/204 (4%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P V NA     V  + D F +A    ++  I+LTG GG+ F  G D    
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGD---- 75
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QKV G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 76  QKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +  T++E  ++GL++ VV  E
Sbjct: 136 NAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLE 195
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
           +L + +  WA +I  +    IR L
Sbjct: 196 QLEEETVKWAQEILEKSPTAIRFL 219

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
Query: 10  VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+  
Sbjct: 29  VADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPE 88
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
            + ++ A +      V +E  ++ +    KP                 +    R++    
Sbjct: 89  LRTLN-APEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNV 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++
Sbjct: 147 KFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDV 206
Query: 190 LKVSRLWA 197
              +  WA
Sbjct: 207 YDSAVAWA 214

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  ++        L+   
Sbjct: 38  NALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDAT--EGLVHSQ 93
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
           +   V + I+ C+ P+                   H R+A       LPE + G+  G G
Sbjct: 94  TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGG 153
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           G+ RLPRL+G+++  +MML  +  ++ EG
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEG 182

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 8   MEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           ++V  +G     +IN P   NA+  P  A L   F E    +     VL GNGG F  G 
Sbjct: 10  VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGA 69
Query: 66  DINVF-----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
           D+  F       VH  G   + P   +           KP+                + C
Sbjct: 70  DLKAFGTAEANAVHRTGPGPMGPSRMM---------LSKPVIAAVSGYAVAGGLELALWC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             R+A      G+     GV    GGT RLPRL+G S+A++M+L  +++ ++E   +GL 
Sbjct: 121 DLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLA 180
Query: 181 DAVV 184
           + VV
Sbjct: 181 NRVV 184

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 118 MGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R    +  ++GLPE++LGV+ G GGTQRL RL+G S+A++  +  ++IT +E  +
Sbjct: 121 LACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEALE 180
Query: 177 LGLIDAVVTSEELLKVSRLWALDIA 201
           +GL++ V    E  + +R +A  +A
Sbjct: 181 IGLVNRVFPQAETRERTREYARKLA 205

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 4/194 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA +TL  P  +NAL     A L+D   E + R  V+A+VL G G  F  G D++  
Sbjct: 24  TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEI 83
Query: 71  QKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
                + D + + D +     VV  + +C  P+                +    R+A P 
Sbjct: 84  IGATLSXDTARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS 143
Query: 129 TQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           T+       +G+  G  G    LPR+VGL  A  ++ L  ++ + E  ++GLI  +    
Sbjct: 144 TRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXLGDTVRAPEAERIGLISELTEEG 203
Query: 188 ELLKVSRLWALDIA 201
              + +R  A  +A
Sbjct: 204 RADEAARTLARRLA 217

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD 84
           N+L+  ++  L    +   S   V+ I++     G F  G D+    K+  +    + P 
Sbjct: 34  NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS---EVGPF 90
Query: 85  VS-VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
           VS +  V+N I +   P                 + C  R+AA   ++GL E  L +IPG
Sbjct: 91  VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 150
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
            GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   +    +   ALD+A
Sbjct: 151 GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLA 208

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 25  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 85  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 144
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 145 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 204
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 205 VPLADLEKETVRWCREM 221

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 209 VPLADLEKETVRWCREM 225

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 4/196 (2%)
Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M+A R  + V  DG  +I  +N P   NAL+  +V+     ++E    D ++A +LTG G
Sbjct: 5   MSAARELL-VERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG 63
Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXM 118
             +  G D++    V       L P  ++   + L     KP+                 
Sbjct: 64  SAYCVGGDLSDGWMVRDGSAPPLDP-ATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQ 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  G
Sbjct: 123 QTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182
Query: 179 LIDAVVTSEELLKVSR 194
           L+  VV +   L  +R
Sbjct: 183 LVGHVVPAGTALDKAR 198

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF- 70
           D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F  G D+  F 
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFV 74
Query: 71  -----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                    G G  ++ P              +KPI                + C   +A
Sbjct: 75  SGEAVLSERGLGFTNVPP--------------RKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
               + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+ +V 
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVD 180
Query: 186 SEELLKVSRLWALDIAAR 203
             + L      AL++AA+
Sbjct: 181 DGQALDT----ALELAAK 194

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 35  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 90
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 91  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 199
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  +R  A  I    +  +R+L    HR D
Sbjct: 200 LGAARAVAASIVGNNQNAVRALLTSYHRID 229

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           +A++TL  P  +NA+A  ++   K    + +  +DV+A+V+TG G  F  G D      +
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 74  HGAGDVSLMPDV---SVELVVNLIEDCKK---PIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G ++  P +   S+EL+  +I   ++   P+                + C  R+A+ 
Sbjct: 94  PHIGGLT-QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 128 KTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                   +  G+     G +  LPR +G S+A ++ML  + + ++E  ++GL+   V S
Sbjct: 153 DAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS 212
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRT 214
           E LL+        IA   +P I    RT
Sbjct: 213 ESLLEECYAIGERIAGFSRPGIELTKRT 240

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 2/194 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V        +A   D+V  I+LTG G + F  
Sbjct: 28  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCA 87
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                  C   
Sbjct: 88  GGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLT 147
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G     R+VG  KA E+  L +   +++    GL++ V
Sbjct: 148 IAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTV 207
Query: 184 VTSEELLKVSRLWA 197
           V   +L K +  W 
Sbjct: 208 VPLADLEKETVRWC 221

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 6   VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V  E    GVAIIT      +NA    + AG     + A +   ++ IVLTG G  F  G
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90
Query: 65  FDINVFQKVHG-------AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXX 117
             +       G       A D +L  D+  E   + +   +KP+                
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLA-DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQA 149
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE  +L
Sbjct: 150 LMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQL 209
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKP 206
           GL+  VVT E+L+  +  +A DIA    P
Sbjct: 210 GLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 14/220 (6%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGD---- 76
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QK  G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 77  QKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E
Sbjct: 137 NAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLE 196
Query: 188 ELLKVSRLWALDIAARRKPWIRSLH-----RTDKLGSLSE 222
           ++   +  W  +I       +R L       TD L  L +
Sbjct: 197 KVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQ 236

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 18  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 73
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 74  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 182
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  ++  A  I    +  +R+L    HR D
Sbjct: 183 LGAAQAVAASIVGNNQNAVRALLASYHRID 212

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +  + +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML  +++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 4/196 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+  
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA 73
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
            +   A      PD S   V     + + P+                +    RI A + +
Sbjct: 74  AETFAA---PRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L
Sbjct: 131 YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVL 190
Query: 191 KVSRLWALDIAARRKP 206
             +   A DIA    P
Sbjct: 191 GAALRMAHDIATNVAP 206

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN--VF 70
           GV  +TL  P  +N+    + A L +  ++    D ++ ++LTG G  F  G D+N    
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNV 83
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                A D+ +  +     +V  +    KP+                +G    IAA   +
Sbjct: 84  DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 143
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +    LG+IP  GGT  LPR+ G ++A+ + LL   +++E+  + G+I  VV  E L 
Sbjct: 144 FVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLA 203
Query: 191 KVSRLWALDIAAR 203
             ++  A  +A +
Sbjct: 204 DTAQQLARHLATQ 216

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 8   MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           + V +DG  +   ++ P  +NA+  P++  L     +A + + V+A++LTG G  F  G 
Sbjct: 8   ISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGG 67
Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
           D+                  +   VV  I    KP+                + C   +A
Sbjct: 68  DLTGGDTA--------GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           AP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+I  + +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITS 179
Query: 186 SEELLKV 192
           ++E   V
Sbjct: 180 ADEYESV 186

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            D V  +TL  P   NAL+  + +       +A + DDV  +++TG    F  G D+   
Sbjct: 16  TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL 75
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                 GD + +PD+S +       D  KP+                + C   IA+   +
Sbjct: 76  ------GDTTELPDISPKW-----PDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++P +G + RLP+ VG+  A  M L    +++++  + GL+  VV  ++LL
Sbjct: 125 FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLL 184
Query: 191 KVSRLWALDIAARRKPWIRSL----HRTDKL 217
             +R  A  I    +  +R+L    HR D L
Sbjct: 185 TAARRVAASIVGNNQKAVRALLDSYHRIDAL 215

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G  FS
Sbjct: 32  PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 91
Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
            G D+    +  G  D       +   V+  I +   P+                  C  
Sbjct: 92  SGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDI 150
Query: 123 RIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +A+ K+    P + +G+    PG    + +PR V    A+EM+   + I+++E    GL
Sbjct: 151 AVASDKSSFATPGVNVGLFCSTPGVALARAVPRKV----ALEMLFTGEPISAQEALLHGL 206
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWI 208
           +  VV   EL + +   A  IA+  +P +
Sbjct: 207 LSKVVPEAELQEETMRIARKIASLSRPVV 235

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E+G+DGV  + L +P +N++   +   L D +        V+A+++ G G  FS 
Sbjct: 19  PSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSS 78
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G   ++  +  G   G + +M +   +LV N+I +C  P+                +   
Sbjct: 79  GGSFDLIDETIGDYQGRIRIMREAR-DLVHNMI-NCDTPVVSAIRGPAVGAGLVVALLAD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    +L      LGV  G       P LVG++KA   +L  +++  EE  ++GL+ 
Sbjct: 137 ISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVS 196
Query: 182 AVVTSEELLKVS 193
             V  +++L  +
Sbjct: 197 LCVDDDDVLSTA 208

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 4/213 (1%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS 
Sbjct: 13  PSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSS 72
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G    +  +  G   G + +M +   +LV+NL+ +  KP+                +   
Sbjct: 73  GGSFELIDETIGDYEGRIRIMREAR-DLVLNLV-NLDKPVVSAIRGPAVGAGLVVALLAD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A+   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+ 
Sbjct: 131 ISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVS 190
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
             V  +E+L  +   A ++A   +  IR   R+
Sbjct: 191 TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRS 223

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL  P  +NA    + A +    ++A +  +V+ +V+TG G  F  G D++   + 
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE 72
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
              GDV       +   ++ +E   KP+                + C  R+ + K     
Sbjct: 73  MDHGDVLRSRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
             + +G++P  G    LPRLVG +KA+E+ +L + +T
Sbjct: 130 AFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 6/204 (2%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG--GFDINVF 70
           G+A I +  P   NA     V  L D F  A   + +  ++LTG G    G   F     
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           Q V G G   D    P ++V  +  LI    K +                + C   IAA 
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV  +
Sbjct: 139 NAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVD 198
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
            L +    WA +I ++    IR L
Sbjct: 199 RLEEEGIQWAKEILSKSPLAIRCL 222

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 5/205 (2%)
Query: 14  GVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G  +I  +N P   NAL+  ++  + + ++   +  D++  +LTG GG F  G D+    
Sbjct: 28  GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAAT 87
Query: 72  KVHGAGDVSLMPDVSVELVVNLIED--CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           K    GD           +  L++    KKP+                 G   R+AA   
Sbjct: 88  K-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++GL+  VV   + 
Sbjct: 147 KFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206
Query: 190 LKVSRLWALDIAARRKPWIRSLHRT 214
           L  +   A  IAA     ++++ RT
Sbjct: 207 LTKALEIAEIIAANGPLAVQAILRT 231

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           VA+IT+  P   NA+   +   + D  EEA    +V A+V+TG G + F  G D+     
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKAISR 84
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V+   D  KP                 +     IA
Sbjct: 85  GENLYHAEH--------PEWGFAGYVHHFID--KPTIAAVNGTALGGGSELALASDLVIA 134
Query: 126 APKTQLGLPELTLGVIPGFGG----TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
                 GLPE+  G+I G GG     ++LPR V    A+E++L  + +T+ +  + GLI+
Sbjct: 135 CESASFGLPEVKRGLIAGAGGVFRIVEQLPRKV----ALELVLTGEPMTASDALRWGLIN 190
Query: 182 AVV 184
            VV
Sbjct: 191 EVV 193

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA+  P  A L   F E  +  +    VL G+ G F  G D+       G     L P  
Sbjct: 33  NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGN---ELHPHG 89
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
              +  + +    KP+                + C  R+      LG+     GV    G
Sbjct: 90  PGPMGPSRLR-LSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDG 148
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205
           GT RLPRL+G S+A++++L  + + + E   +GL++ VV   +  + +   A +IAA  +
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQ 208
Query: 206 PWIRS 210
             +R+
Sbjct: 209 QCVRA 213

>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+I+  +  VNAL       L    + A  RDDV A+V+TGNG  FSGGFD+    K
Sbjct: 13  DSIAVISXDDGKVNALGPAXQQALNAAIDNA-DRDDVGALVITGNGRVFSGGFDL----K 67
Query: 73  VHGAGDVSLMPDV---SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +  +G+V    D      EL   L+   K  +                 G H R+AA   
Sbjct: 68  ILTSGEVQPAIDXLRGGFELAYRLLSYPKPVVXACTGHAIAXGAFLLSCGDH-RVAAHAY 126
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            +   E+ +G    +   +     +  S   +   L+K+   E     G ID +   E +
Sbjct: 127 NIQANEVAIGXTIPYAALEIXKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVV 186
Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
           +  +   A + A   +      H   KL S ++A   ++
Sbjct: 187 VSRAEEAAREFAGLNQ----HAHAATKLRSRADALTAIR 221

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVF-- 70
           GVA++   NPPVN+L++  +  L    E+  +    + ++LT +  G FS G D+     
Sbjct: 14  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG 73
Query: 71  -QKVHGAGDVSLMPDVSVELV-VNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA-- 126
               H AG    + ++ + L   NL+      +                + C  RI A  
Sbjct: 74  RSPAHYAGYWKAVQELWLRLYQSNLV------LVSAINGACPAGGCLVALTCDYRILADN 127
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+  +GL E  LG+I  F     L   +G   A   + L       E  ++G++D VV  
Sbjct: 128 PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE 187
Query: 187 EEL 189
           E++
Sbjct: 188 EQV 190

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 6/203 (2%)
Query: 7   TMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ +  DG  ++  +N P   NA    ++  L     E  +  D++A VL G G  F+ G
Sbjct: 10  TLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69
Query: 65  FDI-NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+ +V  ++ G    SL P+  +           KP+                +     
Sbjct: 70  LDLASVAAEIQGG--ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIV 127
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G++  +
Sbjct: 128 IADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEI 187
Query: 184 VTSEELLKVSRLWALDIAARRKP 206
           V   E +  +   A  I AR+ P
Sbjct: 188 VPVGEHVDTAIAIAQTI-ARQAP 209

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   ++     GD+ L+  V
Sbjct: 29  NALSAELVEALIDGVD-AAHREQVPLLVFAGAGRNFSAGFDFTDYE-TQSEGDL-LLRMV 85
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +E+++  +                         C  R   P+    +P L  G++ G  
Sbjct: 86  RIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLG-- 143
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            T+R   +VG  +A+ ++  +++  ++E  ++G +
Sbjct: 144 -TRRFRDIVGADQALSILGSARAFDADEARRIGFV 177

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)
Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           VT+++ +D  V  +TL  P  +NA    +         +A     V  ++LTG+G  FS 
Sbjct: 6   VTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSA 65
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D+   Q      + S         ++  +    KP+                      
Sbjct: 66  GTDLAEMQARITDPNFS-EGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLA 124
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
             +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL+  +
Sbjct: 125 FMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRI 184
Query: 184 VTSEELLKVSRLWALDIAAR 203
            + EELL  +R  A  +AA+
Sbjct: 185 CSPEELLPEARRHAEILAAK 204

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 11/157 (7%)
Query: 45  SRD-DVKAIVLTGNGGRFSGGFDI-----NVFQ-KVHGAGDVS-LMPDV--SVELVVNLI 94
           SRD D +A+V++G G  F+ G D+     ++ Q K      +S  + D+    +   N+I
Sbjct: 71  SRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVI 130
Query: 95  EDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154
           E C KP+                  C  R  A      + E+ +G+    G  QRLP+++
Sbjct: 131 ERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVI 190
Query: 155 GLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           G    + E+   ++ + ++E    GL+  V   +E++
Sbjct: 191 GNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVM 227

>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 4/200 (2%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +       GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS 
Sbjct: 10  PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 69
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G    + +++  + +  L        +V    +  +P+                +     
Sbjct: 70  GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +    T+L    L LGV  G       P LVG++KA   +LL++ +T EE  +LGL+   
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALA 189
Query: 184 VTSEELLKVSRLWALDIAAR 203
           V  E++ +     AL++A R
Sbjct: 190 VEDEKVYEK----ALEVAER 205

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +L
Sbjct: 121 LACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRL 180
Query: 178 GLIDAVVTSEELLK 191
           GLI  +  +++ L+
Sbjct: 181 GLIQEICENKQELQ 194

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           EV ++GV  +TL   P + L+   +A L D    A   D V  +V+ G G  F  G D+ 
Sbjct: 11  EVLSEGVLTLTLGRAPAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLK 70
Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIE----------DCKKPIXXXXXXXXXXXXXXXXM 118
              + H A      PD     V +L E           C KP                  
Sbjct: 71  EIGR-HRAD-----PDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWK 176
            C    A+P  +  LP +  G   GF  T  +   R++G     E  L   +  ++    
Sbjct: 125 ACDLAYASPAARFCLPGVQNG---GFXTTPAVAVSRVIGRRAVTEXALTGATYDADWALA 181
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
            GLI+ ++    L       A  +AAR +  +R
Sbjct: 182 AGLINRILPEAALATHVADLAGALAARNQAPLR 214

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 369
           V ++G G++G   A         V L ++  + +   ++ I   ++ L   G L      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 370 NNALKMLKGVLDYSEFKDVDMVI-EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428
              L ++ G  +  E  +  M I E V E + LK+KIF++L+       IL+++TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 429 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV---RTERTSAQVILDLMTXXXXXXXXXXX 485
           + +        + I AH  +P + +PL+E+V    T  T+      LM            
Sbjct: 126 SKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMK--KIGQCPMRV 183
Query: 486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-----IGPFQLLDLAGY 540
                GF +NR  +     A  LV  G+        + S GL      IGP + + L   
Sbjct: 184 QKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNAE 243
Query: 541 GVAAATSK 548
           G+ +   +
Sbjct: 244 GMLSYCDR 251

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 22/244 (9%)
Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E  +D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS 
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D N  +++  + D+    D  ++L   ++ +  KP                 +    R
Sbjct: 61  GGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL-NVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           + A      +PEL  G+    G    L    G S   E++   +S+ +       L++ V
Sbjct: 120 LMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178
Query: 184 VTSEELLKVSRLWALDIA------------ARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
           V S  LL  +   A  +A            A  KP+I  L +T       +A + +  A 
Sbjct: 179 VESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT------RDASKAVHKAA 232
Query: 232 LQAK 235
            QA+
Sbjct: 233 FQAR 236

>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 7/217 (3%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGFD+ V  
Sbjct: 12  DDAIGVIRMDDGKVNVLGPTMQQALNEAID-AADRDNVGALVIAGNHRVFSGGFDLKVLT 70
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
                  + ++     EL   L+   K  +                 G H R+AA    +
Sbjct: 71  SGEAKPAIDMLRG-GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDH-RVAAHAYNV 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
              E+ +G+   +   + L   +  S   +   L+K+   E     G ID +   E +L 
Sbjct: 129 QANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLS 188
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
            +   A + A   +      H   KL + +EA + ++
Sbjct: 189 RAEEAAREFAGLNQ----QAHNATKLRARAEALKAIR 221

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 12/176 (6%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   +V  L     +A      +AIVLTG G  F  G D++      G    +  PD 
Sbjct: 43  NALNSQLVEELTQAIRKAGD-GSARAIVLTGQGTAFCAGADLS------GDAFAADYPDR 95
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +EL    ++    P+                M C  R+ AP      P    G+     
Sbjct: 96  LIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNW 154
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
             +RL  LVG  +A  M+L ++ +T+E     G+ + + T    L  ++ WA +IA
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIA 206

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A ITL  P   NA    ++  L   +  A   ++VK I+L  NG  FS G D+    
Sbjct: 31  DSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDL---- 86
Query: 72  KVHGAGDVSLMPDVSVELVVN-----------LIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
              G G+V     +S+E ++               +  KP                   C
Sbjct: 87  --RGGGEVP--EKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPC 142
Query: 121 HARIAAPKTQLGLPELTLGV--IPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              +A+       P   +G+  +   G T  L    G  KA E++   +++T+EE  + G
Sbjct: 143 DLILASDDALFSDPVALMGIGGVEYHGHTWEL----GPRKAKEILFTGRALTAEEAERTG 198
Query: 179 LIDAVVTSEELLKVSRLWALDIA 201
           +++ VV  +EL   +R  A  IA
Sbjct: 199 MVNRVVARDELDAQTRELAEQIA 221

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 118 MGCHARIAAPKTQ-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R A+ +   LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   +
Sbjct: 123 LACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAER 182
Query: 177 LGLIDAVVTSEEL 189
            G ++  V   EL
Sbjct: 183 YGWVNRAVPDAEL 195

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG F  G D++   + 
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLS---EA 77
Query: 74  HGAGDVSLMPDVSVE------LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G  S   D++VE       ++  I + + P+                  C   +A P
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           ++   L E  +GV P       LP+L   + A    L  +   +    ++GLI   + +E
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPKLSARAAA-RYYLTGEKFDARRAEEIGLI--TMAAE 194
Query: 188 EL 189
           +L
Sbjct: 195 DL 196

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-- 83
           NA+       L + F++ +   D +A+V++G G  F+ G D+     +  A D+   P  
Sbjct: 26  NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDL-----MDMASDILQPPGD 80
Query: 84  DVS------------VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
           DV+             +    +IE C KP+                  C  R        
Sbjct: 81  DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFF 140
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEE-L 189
            + E+ +G+    G  QRLP+++G    + E+   ++ + ++E    GL+  V   ++ +
Sbjct: 141 QVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVM 200
Query: 190 LKVSRLWALDIAAR 203
           L  +   A DI+++
Sbjct: 201 LNAAFALAADISSK 214

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+      L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65  FDINVFQKVHGAG-DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+   ++V   G + +    +S+  + + +    KP                 + C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E+ +G +        L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VXDEEARLGYTEVKIGFVAALVSVI-LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
Query: 184 VTSEELLKVSRLWALDIA 201
               + L+ ++  A ++A
Sbjct: 179 APPGKALEEAKALAEEVA 196

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Query: 45  SRDDVKAIVLTGNGGR--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIX 102
           +R +++ I+L    G   FS G DI+   ++   G   L  D  +  +  +I+   KPI 
Sbjct: 44  NRPEIRCIILRAPSGSKVFSAGHDIH---ELPSGGRDPLSYDDPLRQITRMIQKFPKPII 100
Query: 103 XXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
                          M     IAA  +   +  + LGV     G   L R  G     E+
Sbjct: 101 SMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL 160
Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +  +  IT++    +G+++ VV  EEL
Sbjct: 161 IFTASPITAQRALAVGILNHVVEVEEL 187

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK--VHGAGDVSLMP 83
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F K   +     SL  
Sbjct: 46  NALNTEVIKEIVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEM 104
Query: 84  DVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
             +++  VN     KKPI                  C    A  K     P  T G  P 
Sbjct: 105 VDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD 164
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
              +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 165 GCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINV 69
           G  G+A++   NPPVN+L++  +       E+  +   ++ ++LT    G FS G D+  
Sbjct: 12  GEAGIAVMKFKNPPVNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLME 71
Query: 70  F---QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA 126
                  H A     + ++ + L ++ +      +                + C  RI A
Sbjct: 72  MYGRNPAHYAEYWKAVQELWLRLYLSNL-----TLISAINGASPAGGCLMALTCDYRIMA 126
Query: 127 --PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
              K  +GL E  LG++  F         +G   A   + L       E  K+GL+D VV
Sbjct: 127 DNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGTLFPPAEALKVGLVDEVV 186
Query: 185 TSEELLKVSR 194
             +++   +R
Sbjct: 187 PEDQVHSKAR 196

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 11/202 (5%)
Query: 10  VGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFD 66
           +G  G   +  +N P  +NAL +  +  +  + ++     +   I++ G GG+ F  G D
Sbjct: 10  LGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGD 69
Query: 67  INVFQKVHGAGDVSLMPDVSVE--LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARI 124
           I V  +   A    + P    E   + N +  C+KP                 +    R+
Sbjct: 70  IRVISEAEKAKQ-KIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRV 128
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           A  K     PE  +G+ P  GG   LPRL G      + L    +   + ++ G+    V
Sbjct: 129 ATEKCLFAXPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFV 187
Query: 185 TSEELLKVSRLWALDIAARRKP 206
            SE+L  +      D+ A + P
Sbjct: 188 DSEKLAXLEE----DLLALKSP 205

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VSLM 82
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F + H   D    SL 
Sbjct: 27  NALNTEVIKEMVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVR-HLRNDRNTASLE 84
Query: 83  PDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
              +++  VN     KKPI                  C    A  K     P  T G  P
Sbjct: 85  MVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSP 144
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
               +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 145 DGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 202

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA    ++  ++ + + A +  +V+ IVL  NG  FS G D+   Q +    +   + D 
Sbjct: 26  NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDS 85
Query: 86  SVELVVNL---IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            V  + NL   I    KP                   C   IA+   +    E+ LG+IP
Sbjct: 86  LV--LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP 143
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSI-TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
               +  + R +G  +A +M+ +S  +  +   + L L+   V  + LL+ +  +A  I+
Sbjct: 144 AV-ISPYVVRAIG-ERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQIS 201

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  +
Sbjct: 16  EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY 75
Query: 71  QKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            +   AG   L   +  E       L+    KP                 + C   I A 
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           +   GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   
Sbjct: 136 EATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLA 195
Query: 188 ELLKVS 193
           +L +V+
Sbjct: 196 QLREVT 201

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINVF 70
           GV ++TL  P  +N+L   +V  + ++     + D V+A++LTG G R   +GG  + ++
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 71  Q--KVHGAGDVSLMPDVSVELVVNL-IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              K  GA       D   E  +N  I    KP                    + R+   
Sbjct: 78  HSAKADGAEARRFWFD---EYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTD 134
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
            T++ +PE+ +G IP  GGT  L R  G    +   L     +  +   +G  D  V  +
Sbjct: 135 TTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHD 193
Query: 188 ELLKVSR 194
           ++ + +R
Sbjct: 194 KIDEFTR 200

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 5/194 (2%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS-GGFDINVFQK 72
           GVA I L NPPVN +   ++  L+           V+ IV +     F     D+ + +K
Sbjct: 18  GVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEK 77
Query: 73  VHGAGDV--SLMPDVSV-ELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +    ++  S   DV+V + V  LI    +                         AA +T
Sbjct: 78  MDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET 137
Query: 130 Q-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
             LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + ++E
Sbjct: 138 AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE 197
Query: 189 LLKVSRLWALDIAA 202
           L +     A +IAA
Sbjct: 198 LDEYVDRVARNIAA 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	589
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	1e-128
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-121
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	9e-76
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	5e-23
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	6e-72
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	8e-65
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	3e-64
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	7e-64
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	3e-63
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	4e-63
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	8e-63
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	8e-63
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	4e-61
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	5e-61
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	1e-60
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-60
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	9e-60
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-59
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-59
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	2e-59
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	2e-59
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	4e-59
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	4e-59
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	4e-59
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	4e-59
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	7e-59
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	9e-59
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-58
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-58
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-58
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	5e-58
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	7e-58
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	7e-58
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	7e-58
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	8e-58
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-57
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	4e-57
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	5e-57
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-56
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-56
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	8e-56
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-55
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-55
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	2e-55
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	2e-55
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-55
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	3e-55
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	3e-55
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	3e-55
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	9e-55
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	1e-54
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	2e-54
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	3e-54
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-53
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	2e-53
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-53
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	3e-53
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	4e-53
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	4e-53
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	5e-53
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	8e-53
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-51
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	6e-51
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	9e-51
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	3e-50
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	6e-50
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-49
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	5e-49
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	4e-48
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	6e-48
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	4e-46
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	5e-46
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-09
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	4e-44
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	1e-43
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-42
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	7e-22
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	4e-06
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	1e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  715 bits (1849), Expect = 0.0
 Identities = 350/582 (60%), Positives = 442/582 (75%), Gaps = 4/582 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
               +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GR
Sbjct: 4   RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
           FSGGFDI+ F ++             S++++ +L+E  +KP VAA++GLALGGGLELAM 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239
           IDAVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           NM     CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           D GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            +G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KK PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNG---NKGF 578
           +GVA AT+ +F + F +R+++S ++ L+ +  R G    KGF
Sbjct: 544 FGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  674 bits (1742), Expect = 0.0
 Identities = 173/589 (29%), Positives = 281/589 (47%), Gaps = 13/589 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
                +T+     G+  +        VN      +  L+   +   +   VK ++++   
Sbjct: 3   YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             F  G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ 
Sbjct: 63  DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 234
             +DAVVT+++L   +        +    +           KL ++ +           A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242

Query: 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294
            +  PN P     +  I++    G    +  EA  F +L     S  L+ +F   +   K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302

Query: 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354
              V D     + V++ AV+G G+MG GIA         +++K++N   + +G+      
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360

Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
           + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E    
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
              ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   + 
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480

Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQL 534
             K + K P+VV +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL 540

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNG---NKGF 578
           +D+ G            + FPDR        +D L ++ R G    KGF
Sbjct: 541 MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGF 589

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  659 bits (1702), Expect = 0.0
 Identities = 195/583 (33%), Positives = 303/583 (51%), Gaps = 30/583 (5%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
             +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F  
Sbjct: 29  HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
                     P +++  +V+ I+  +KP++AA++G+ALGGGLELA+GCH RIA  K ++G
Sbjct: 89  --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV   + ++ 
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199

Query: 193 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
           +  +A  I  +     R       + SL     V   A  + +K  P +   + C+  I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257

Query: 253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 309
             + H    G+ +E K+F  L     ++ L + FFA+++ +K    +         + V 
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
            V V+G G MG GIA +     I VV  E + + L    K I   +    +R       +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
             A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495

Query: 490 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 549
            GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V     K 
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKG 555

Query: 550 FDKAFPD-----------RSFQSPLVDLLLKSGRNG---NKGF 578
                P             S  SPL D+L ++GR G    KG+
Sbjct: 556 QGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGW 598

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  383 bits (986), Expect = e-128
 Identities = 105/319 (32%), Positives = 152/319 (47%), Gaps = 19/319 (5%)

Query: 277 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 333
             ++ L + FFA+++ +K    +         + V  V V+G G MG GIA +     I 
Sbjct: 3   GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62

Query: 334 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393
           VV  E + + L    K I   +    +R       +  A   L+      E   VD+V+E
Sbjct: 63  VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120

Query: 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 453
           AV E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180

Query: 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 513
            LLE++ +  +S   I  +M++ K I K+ VVVGNC GF  NR   PY      L+  G 
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240

Query: 514 DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-----------RSFQSP 562
               +D  +  FG  +GPF++ DLAG  V     K      P             S  SP
Sbjct: 241 KPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSP 300

Query: 563 LVDLLLKSGRNG---NKGF 578
           L D+L ++GR G    KG+
Sbjct: 301 LGDMLCEAGRFGQKTGKGW 319

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  364 bits (937), Expect = e-121
 Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 18/313 (5%)

Query: 275 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 329
           +      +        + +   ++          +   V  VA+IGGG MG  +A    L
Sbjct: 16  LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75

Query: 330 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389
             I   L   N +   + ++ + A      +  +L   +       LK   D+ +  + D
Sbjct: 76  AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132

Query: 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 449
           +++E+VIE + LK+++F+ LE  C   CI  TNTS++DLN +         ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192

Query: 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 508
           A+V+ L+EI+    TS+Q I       + IKK+PV+VGNC  F  NR    Y  QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252

Query: 509 VSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLL 568
              G    +ID  I +FG  +GP  + D+ G+ V     KE           +P+   + 
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEP------NPIEKEMW 306

Query: 569 KSGRNG---NKGF 578
           +  R G   NKGF
Sbjct: 307 RLKRYGRKTNKGF 319

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  248 bits (634), Expect = 9e-76
 Identities = 102/278 (36%), Positives = 146/278 (52%), Gaps = 7/278 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L  +     K PV   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   PY   A   +   V     ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244

Query: 546 TSKEFDKAFP-DRSFQ-SPLVDLLLKSGRNGNK---GF 578
            +     AF  +R F  S +   L+  GR G K   G 
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGV 282

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  101 bits (254), Expect = 5e-23
 Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 13/207 (6%)

Query: 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 436
            GV D+   ++  + +EA +       K+  + +       +L   T       +  + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338

Query: 437 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 496
               +I            ++ I              +   +   K  + + +  G  + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392

Query: 497 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
                   A   +  GV     ID+A+R     P GP       G+       +     +
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHY 452

Query: 555 PDRSFQ-SPLV--DLLLKSGRNGNKGF 578
            +  ++   L+    LL+SG    +G 
Sbjct: 453 GEERYRPCSLLRQRALLESGYES-EGH 478

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  232 bits (593), Expect = 6e-72
 Identities = 92/288 (31%), Positives = 139/288 (48%), Gaps = 13/288 (4%)

Query: 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 362
           K   V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 363 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               K   +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
           I A+NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLL 535
            + K PV   +  GF VNR   PY   A  L   G      ID+A++   G P+GPF+LL
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250

Query: 536 DLAGYGVAAATSKE-FDKAFPDRSFQ-SPLVDLLLKSGRNGNK---GF 578
           D  G            +    +   Q SP ++ L+   + G K   GF
Sbjct: 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGF 298

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  211 bits (541), Expect = 8e-65
 Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+ TL + P NA++  ++  + +  ++    D+++ +V+ G G  FS G DI  F  
Sbjct: 14  DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
           V  A   + +  +        +E C KP++AA+ G ALGGGLE AM CH R A    +LG
Sbjct: 74  VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPELTLG+IPGF GTQRLPR VG +KA EMML S  IT  E  K GL++ V   E  L  
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192

Query: 193 SRLWALDIAAR 203
           +   A  IA +
Sbjct: 193 TLKVAKQIAGK 203

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  209 bits (535), Expect = 3e-64
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VT    +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGF
Sbjct: 7   VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           D+ V      +G+     D+      +   +    KP+V A  G A+  G  L      R
Sbjct: 65  DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA    +   E+ +G+   +   + L   +  S   +   L+K+   E     G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180

Query: 184 VTSEELLKVSRLWALDIAAR 203
              E +L  +   A + A  
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  210 bits (537), Expect = 7e-64
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
             GVA I L NPPVN +   ++  L+           V+ IV +      F    D+ + 
Sbjct: 16  EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           +K+    +++      V +   V  LI    +  +  + G A GGG E         AA 
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 128 -KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
               LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195

Query: 187 EELLKVSRLWALDIAAR 203
           +EL +     A +IAA 
Sbjct: 196 DELDEYVDRVARNIAAL 212

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  208 bits (531), Expect = 3e-63
 Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
           DG+A I L     N+  +          ++     D+K +++  +  + FS G DIN  +
Sbjct: 17  DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
                   +       E  ++ I    +  +A +EG  +GGGLE+A+ C  R    +  +
Sbjct: 77  SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           +GLPE++LGV+ G GGTQRL RL+G S+A++M +  ++IT +E  ++GL++ V    E  
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194

Query: 191 KVSRLWALDIAAR 203
           + +R +A  +A  
Sbjct: 195 ERTREYARKLANS 207

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  208 bits (532), Expect = 4e-63
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 5/196 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +  V   T   PP+N +   +V  L    EE       + ++        F    D+   
Sbjct: 15  DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
            +   A            L  +   +       +A + G A G G E  + C  R A+  
Sbjct: 75  PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
              LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   + G ++  V   
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193

Query: 188 ELLKVSRLWALDIAAR 203
           EL +     A  ++  
Sbjct: 194 ELDEFVAGIAARMSGF 209

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  206 bits (527), Expect = 8e-63
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 2   AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            + RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +   
Sbjct: 1   GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60

Query: 61  -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+         H AG    + ++        +      +V+A+ G    GG  +
Sbjct: 61  VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ C  RI A  P+  +GL E  LG+I  F     L   +G   A   + L       E 
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175

Query: 175 WKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            ++G++D VV  E++   +        A 
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  207 bits (529), Expect = 8e-63
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+   +
Sbjct: 31  DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
            +  A +      V +E  ++ +    KP VAAV G ALG GL LA+    R++    + 
Sbjct: 91  TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++  
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208

Query: 192 VSRLWALDIAAR 203
            +  WA      
Sbjct: 209 SAVAWARRYLEC 220

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  203 bits (519), Expect = 4e-61
 Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 30/288 (10%)

Query: 299 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 358
           +D         KV VIG GLMG GIA A I +   VVL++V+ + L    + I   +   
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
                         L  ++      + KD D+V+EAV E +  K ++  E+E+    +  
Sbjct: 59  --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
           L +NTS I ++ + E+  S  R +G H+ +P HVMPL+EIV +  T ++ +  +    + 
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQL 534
           + K  VV        VNR        A  ++  GV    +D   +   GL     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK---GF 578
           LD  G  VA   S    K F D  F+    +   +K G  G K   G 
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGI 268

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  202 bits (516), Expect = 5e-61
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  I L  P   NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  +
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A +  +        V + I+ C+ P++AA++G  +GGGLELA   H R+A      
Sbjct: 82  ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LPE + G+  G GG+ RLPRL+G+++  +MML  +  ++ EG   G    ++ +     
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199

Query: 192 VSRLWALDIAAR 203
            +      +A  
Sbjct: 200 KALELGNRVAQN 211

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  200 bits (512), Expect = 2e-60
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    ++++     V  I+L      N+L++ ++  L++   +     + + ++LTG G 
Sbjct: 5   LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G D+     +     V     +     + ++E   +P++AA+ G+ALGGG EL++
Sbjct: 65  KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
            C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
           L++ VV    L + +   A  IA+ 
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  199 bits (508), Expect = 9e-60
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 4/195 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +   AG   L   +  E        +    KP +A V G   GGG    + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196

Query: 189 LLKVSRLWALDIAAR 203
           L +V+   A ++  +
Sbjct: 197 LREVTIELARNLLEK 211

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  197 bits (503), Expect = 1e-59
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 19/205 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           V+  + +DGVA +TL N  VNA++  ++       ++A    D   +++TG  G  SGG+
Sbjct: 8   VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
           D+ V              + ++ LV         +     PI+ A  G A+  G  L + 
Sbjct: 65  DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115

Query: 120 CHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              RI       +GL E+ +G+     G +     +  S     ++ ++    E     G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
            +D VV+ EEL   +   A  +   
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  198 bits (505), Expect = 1e-59
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI   
Sbjct: 12  EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K     D   +  ++     + +   K P++AAV GLALGGG ELA+ C   +A+   +
Sbjct: 72  AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187

Query: 191 KVSRLWALDIAAR 203
           + +   A  +A +
Sbjct: 188 EETMRLAGRLAEQ 200

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  197 bits (504), Expect = 2e-59
 Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +       GV +I L  P   NAL   + A + D   +  +  ++ AIV+TG+  
Sbjct: 6   TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +          + ++    + +   +KPIVAAV G ALGGG ELAM 
Sbjct: 66  AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  +V + +LL  +   A  IA  
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  198 bits (505), Expect = 2e-59
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    + +E  +  V IITL  P   NAL   ++  +     E     D+ AI++TG+  
Sbjct: 22  MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +      +             +   + P +AAV G ALGGG ELAM 
Sbjct: 81  AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV +++LL  +R  A  I+  
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  198 bits (505), Expect = 4e-59
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+VA V G ++GGG  L M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   +L K +  W  ++   
Sbjct: 209 VPLADLEKETVRWCREMLQN 228

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  197 bits (503), Expect = 4e-59
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                + +   +  V +I L  P   NA    ++  L     E  +  D++A VL G G 
Sbjct: 6   SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+         G  SL P+  +           KP++ AV G  L  G+ELA+ 
Sbjct: 65  LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  +V   E +  +   A  IA 
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  197 bits (503), Expect = 4e-59
 Identities = 49/198 (24%), Positives = 93/198 (46%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS G 
Sbjct: 15  LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              +  +  G  +  +        +V  + +  KP+V+A+ G A+G GL +A+     +A
Sbjct: 75  SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+   V 
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194

Query: 186 SEELLKVSRLWALDIAAR 203
            +E+L  +   A ++A  
Sbjct: 195 DDEVLPTATRLAENLAQG 212

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  196 bits (500), Expect = 4e-59
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +GV  IT+ +    N  +  IV GL+  F         K ++LTG G  FS G       
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +           +V V  +  LI DC+ PI+AA++G + GGGL L +     + + ++  
Sbjct: 71  R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
               +  G  P    +  L   +G   A EM+   ++   +E  + G+   VV+ +++L 
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183

Query: 192 VSRLWALDIAAR 203
            ++     IA  
Sbjct: 184 YAQQLGQKIAKS 195

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  196 bits (500), Expect = 7e-59
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             +P + ++   D V  +TL  P   NAL+  + +       +A + DDV  +++TG   
Sbjct: 6   ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+                   +  +     D  KP++ A+ G A+ GGLELA+ 
Sbjct: 65  VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IA+   +       +G++P +G + RLP+ VG+  A  M L    +++++  + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  ++LL  +R  A  I   
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  196 bits (500), Expect = 9e-59
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            AA  + +E  +  V I+T+  P   NAL+  +V+     ++E    D ++A +LTG G 
Sbjct: 6   SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            +  G D++    V   G    +   ++   + L     KP++AAV G  LGGG E+   
Sbjct: 65  AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
              R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV +   L  +R  A  I  
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  195 bits (497), Expect = 2e-58
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
              FS G DI+        G   L  D  +  +  +I+   KPI++ VEG   GG  E+ 
Sbjct: 59  SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           M     IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           G+++ VV  EEL   +   A  I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  194 bits (495), Expect = 3e-58
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS G D N  
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++  + D+    D  ++ +   + +  KP +AAV+G A+G G + A+    R+ A    
Sbjct: 68  KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +PEL  G+    G    L    G S   E++   +S+ +       L++ VV S  LL
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185

Query: 191 KVSRLWALDIAAR 203
             +   A  +A+ 
Sbjct: 186 DAAITQAHVMASY 198

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  194 bits (496), Expect = 3e-58
 Identities = 73/193 (37%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q                    + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189

Query: 191 KVSRLWALDIAAR 203
           + +   A  IA  
Sbjct: 190 EEAIQCAEKIANN 202

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  194 bits (495), Expect = 5e-58
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +       GV  IT       NA+   +  GL   + +  + + V+A++L G GG
Sbjct: 7   ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+ 
Sbjct: 66  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +    T+L    L LGV  G       P LVG++KA   +LL++ +T EE  +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  E++ + +   A  +A  
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  194 bits (495), Expect = 7e-58
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
               G      +P ++V  +  LI    KP++A V+G A+GGG  L + C   IAA    
Sbjct: 81  GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E++ 
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199

Query: 191 KVSRLWALDIAAR 203
             +  W  +I   
Sbjct: 200 DETVQWCKEIMKH 212

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  193 bits (494), Expect = 7e-58
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 6/208 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
           M+   V  E+  +    ITL  P   N L   +   L +      +   + +I+L     
Sbjct: 1   MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
             FS G  +              + +V   L   V  I    K  VA + G A GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179

Query: 177 LGLIDAVV-TSEELLKVSRLWALDIAAR 203
           LGLI  +    +EL +  + +   ++  
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  193 bits (494), Expect = 7e-58
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           N G+ ++ +      N+L+  ++  L    +   S   V+ I++       F  G D+  
Sbjct: 19  NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             K+  + +V          V+N I +   P +AA++GLALGGGLELA+ C  R+AA   
Sbjct: 79  RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   + 
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196

Query: 190 LKVSRLWALDIAAR 203
              +   ALD+A  
Sbjct: 197 GDAAYRKALDLARE 210

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  193 bits (493), Expect = 8e-58
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       N+L   ++  ++     A + DD K ++L+  G  F  G D   F
Sbjct: 13  DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +            ++  +   VN     KKPI+ AV G A+G G  +   C    A  K
Sbjct: 72  IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    T   P+++G + A EM+L  + +T++E    GL+  V     
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 192 FTQEVMVRIKELASC 206

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  193 bits (493), Expect = 1e-57
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 4/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +   +   GV  + +  P   NAL   +   +    +EA    DV+ +VL G   
Sbjct: 2   SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+  F       +      V   +++       KP++ AV+G+A+G G+ + + 
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
                A       +P ++LG+ P  G +Q L +  G  KA E++  +K   +E   + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ +V  E+    ++  A  + A 
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  192 bits (489), Expect = 4e-57
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + V  I L  P   NAL   +V  L     +A      +AIVLTG G  F  G D++   
Sbjct: 29  EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                 D        +  +   ++    P+V A+ G A+G GL+LAM C  R+ AP    
Sbjct: 88  FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
             P    G+       +RL  LVG  +A  M+L ++ +T+E     G+ + + T  +   
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200

Query: 192 VSRLWALDIAAR 203
               WA +IA  
Sbjct: 201 ----WAAEIARL 208

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  191 bits (488), Expect = 5e-57
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                      PD S   V     + + P++AAV G A+G G+ LA+    RI A + + 
Sbjct: 75  ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L 
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191

Query: 192 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 234
            +   A DIA    P      + L    ++  +S A    +      
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  191 bits (487), Expect = 1e-56
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 5/204 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           + P   +E       I+T+  P   NAL+  ++  + + ++   +  D++  +LTG GG 
Sbjct: 18  SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
           F  G D+    K    GD           +  L      KKP++AAVEG A+ GG E+  
Sbjct: 77  FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
           G   R+AA   + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195

Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
           L+  VV   + L  +   A  IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  190 bits (485), Expect = 1e-56
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               RVT E     + +I L      NA    ++A L     E    ++ +  VL  +G 
Sbjct: 9   SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+        A      PD  V+    +     KP+V AV+G     G+EL + 
Sbjct: 68  HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +AA  T+    E+  G+ P  G T R PR  G + A+  +L      ++E  ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV   E L  +  +A  IA 
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  188 bits (480), Expect = 8e-56
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
           AP    E     V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + 
Sbjct: 8   APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+    +          P+      V       KP +AAV G ALGGG ELA+  
Sbjct: 67  FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +A  + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + VV +  +L  +   A  I  
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  189 bits (481), Expect = 1e-55
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D   F
Sbjct: 31  DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            K       +   ++   +   VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    +   P+++G + A EM++  + +T+ E    GL+  V  +  
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 210 FTQEVMIQIKELASY 224

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  187 bits (478), Expect = 1e-55
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 2/192 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + V  +TL  P   NA    +         +A     V  ++LTG+G  FS G D+   Q
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQ 73

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                             ++  +    KP++ AV GL +G G  +         +   +L
Sbjct: 74  A-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL 132

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
             P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL+  + + EELL 
Sbjct: 133 KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLP 192

Query: 192 VSRLWALDIAAR 203
            +R  A  +AA+
Sbjct: 193 EARRHAEILAAK 204

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  187 bits (478), Expect = 2e-55
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +  + IITL  P   N++   +  GL   ++  T     +A V+TG G  FS G D    
Sbjct: 35  DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++    D+          +V  +  C+ P+VAAV G A+G G  L         A    
Sbjct: 95  KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           L  P + +G++   GG    P  + L  A E  L    I+++   +LGL + V   ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212

Query: 191 KVSRLWALDIAA 202
             +   A  I  
Sbjct: 213 AEAIACAKKILE 224

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  188 bits (480), Expect = 2e-55
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 17/219 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
            +  R+  E     V  I +     INP     +  +V  +            T+     
Sbjct: 29  GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
            +VL  +   F+ G D+ +F ++   GD + + D +   V  +         +   +A V
Sbjct: 88  HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147

Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165
           +G ALGGG E A+ CH  IA     +GLPE+   + PG G    + + +    A ++ML 
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207

Query: 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204
               ++E+   +GL+D VV   + +          + R 
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  187 bits (476), Expect = 2e-55
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 7/193 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
                  TL  P   NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   +
Sbjct: 14  RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +       +  M  +  E+++  +       +A   G   G G++L   C  R   P+  
Sbjct: 73  ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P L  G++    GT+R   +VG  +A+ ++  +++  ++E  ++G +       +  
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWP 187

Query: 191 KVSRLWALDIAAR 203
            +    A    A 
Sbjct: 188 ALIDAAAEAATAL 200

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  186 bits (476), Expect = 3e-55
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
             P V +E   D + IIT+  P   N++   +   L D  +   +   +   +LTG GG 
Sbjct: 13  TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+  F      G+      V    +        KP++AAVEG AL GG ELA+  
Sbjct: 72  FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +AA  +  G+PE+  G++ G GG  RLP  +  + A+E+ L   ++++E    LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +      L  +   A  I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  187 bits (478), Expect = 3e-55
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V ++     +A++TL  P   NA+A  ++   K    + +  +DV+A+V+TG G  F  G
Sbjct: 25  VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84

Query: 65  FDIN-----VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            D                 ++L     ++ V+  +    +P++AA+ G A+GGGL LA+ 
Sbjct: 85  ADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALA 144

Query: 120 CHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
           C  R+A+         +  G+     G +  LPR +G S+A ++ML  + + ++E  ++G
Sbjct: 145 CDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIG 204

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
           L+   V SE LL+        IA  
Sbjct: 205 LVSRKVASESLLEECYAIGERIAGF 229

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  186 bits (474), Expect = 3e-55
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G D+   +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66

Query: 72  KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +V   G           + + + +    KP VAAV G A+ GG  LA+ C   +   + +
Sbjct: 67  RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           LG  E+ +G +     +  L R VG   A +++L  + + + E   LGL++ +    + L
Sbjct: 127 LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKAL 185

Query: 191 KVSRLWALDIAAR 203
           + ++  A ++A  
Sbjct: 186 EEAKALAEEVAKN 198

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  185 bits (473), Expect = 9e-55
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 8/198 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
            G+A I +  P   NA     V  L D F  A   + +  ++LTG G        F  G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           D +V  +  G  D    P ++V  +  LI    K ++A V G A+GGG  L + C   IA
Sbjct: 78  DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A     G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV 
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196

Query: 186 SEELLKVSRLWALDIAAR 203
            + L +    WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  185 bits (471), Expect = 1e-54
 Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 4/200 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +      +G+  + +                  D F + +   D + ++LTG+G  +   
Sbjct: 25  LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            D      V    +         +++ N + D + P+++AV G AL    E  +     +
Sbjct: 85  IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142

Query: 125 AAPKTQL-GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+  T    +P L  G++PG G     P  +GL +    +   + +T+++ ++L ++  V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202

Query: 184 VTSEELLKVSRLWALDIAAR 203
           +   +L++ +   A  +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  184 bits (470), Expect = 2e-54
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF +   
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
               G   V     ++      +++ I   K+P++AA+ G+A GGGL +++     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189

Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  184 bits (470), Expect = 3e-54
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 10/210 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +  EV +   A ITL  P   NAL+  ++  L+  + EA + D V  +V+TG G 
Sbjct: 8   DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66

Query: 60  RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
            F  G D+    +            +     + +          KP++ AV G+  G G+
Sbjct: 67  AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML--LSKSITSE 172
           +        IA+ +     P +++G++ G     R+ R++  S A+ M L    + ++++
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             ++LGLI  +V  + LL+ +   A  + +
Sbjct: 186 RAYELGLISEIVEHDRLLERAHEIADIVNS 215

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  182 bits (463), Expect = 2e-53
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P V +E     V  + L  P   NA+  P  A L   F E  +  +    VL G+ G F
Sbjct: 10  QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G  ++       +           KP++AA+ G A+ GG+ELA+ C 
Sbjct: 69  CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            R+      LG+     GV    GGT RLPRL+G S+A++++L  + + + E   +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            VV   +  + +   A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  181 bits (462), Expect = 2e-53
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 4/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA +TL  P   NA    + A +    ++A +  +V+ +V+TG G  F  G D++  
Sbjct: 10  KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                  D   +       ++  +   +KP+VAAV G A G G+ LA+ C  R+ + K  
Sbjct: 70  T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                + +G++P  G    LPRLVG +KA+E+ +L + +T+EE   LGL   V+   +  
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186

Query: 191 KVSRLWALDIAAR 203
           +  + +A  ++A 
Sbjct: 187 EEVKQFAERLSAM 199

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  181 bits (462), Expect = 2e-53
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           ++   +  EV ++GV  +TL   P + L+  ++A L D    A   D V  +V+ G G  
Sbjct: 3   LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           F  G D+    +     D        +      ++  +  C KP +A VEG+A   GL+L
Sbjct: 63  FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C    A+P  +  LP +  G          + R++G     EM L   +  ++    
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALA 181

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            GLI+ ++    L       A  +AAR
Sbjct: 182 AGLINRILPEAALATHVADLAGALAAR 208

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  181 bits (461), Expect = 3e-53
 Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  V +E   D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F
Sbjct: 6   ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+  F    G   +S        +        +KPI+AAVEG AL GG EL + C 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            +V   + L  +   A  I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  181 bits (462), Expect = 4e-53
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA +TL  P   NAL     A L+D   E + R  V+A+VL G G  F  G D++   
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               + D + + D +     VV  + +C  P++AA+ G+A G G  LA+    R+A P T
Sbjct: 85  GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144

Query: 130 QLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           +       +G+  G  G    LPR+VGL  A  +++L  ++ + E  ++GLI  +     
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204

Query: 189 LLKVSRLWALDIAA 202
             + +R  A  +A 
Sbjct: 205 ADEAARTLARRLAD 218

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  180 bits (460), Expect = 4e-53
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 9/196 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GV ++T+                L   F +     + K ++LTG G  F    D   F
Sbjct: 23  DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
                 G      ++  E   ++N +   + P++AAV G  +    E+ +     +AA  
Sbjct: 83  N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137

Query: 129 TQLG-LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
                 P    G++PG G     P ++G ++    +L  + + +      G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197

Query: 188 ELLKVSRLWALDIAAR 203
           ELL  +   A  IA +
Sbjct: 198 ELLPRAWELARGIAEK 213

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  182 bits (463), Expect = 5e-53
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 11/234 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V  E    GVAIIT       NA    + AG     + A +   ++ IVLTG G 
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
            F  G  +       G          +       E   + +   +KP++AA+ G  +G G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           L  A+ C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 223
             +LGL+  VVT E+L+  +  +A DIA    P     I+     D    + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  177 bits (450), Expect = 1e-51
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +++E  +  V  I L  P   NA+  P++  L     +A + + V+A++LTG G 
Sbjct: 3   GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+        A         +   VV  I    KP++A V G A+G G  LA+ 
Sbjct: 62  AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AAP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           I  + +++E   V       ++  
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  175 bits (447), Expect = 6e-51
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +  +V +D +A ITL  P   NA    ++  L   +  A   +DV  IVL  NG 
Sbjct: 17  RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+     V     +  +        +       +  KP +AAV+G  + GGL L
Sbjct: 76  HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   IAA       P + + +  G          +G  KA E++   +++T+EE  +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQ 193

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            G+++ VV  + L   +R  A +IA  
Sbjct: 194 TGMVNRVVPRDRLDAETRALAGEIAKM 220

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  175 bits (446), Expect = 9e-51
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F 
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ + 
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
               P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V      
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212

Query: 190 LKVSRLWALDIAAR 203
            K         A  
Sbjct: 213 QKEVWTRLKAFAKL 226

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  173 bits (441), Expect = 3e-50
 Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 4/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   +  E+  D V ++T+      NA    ++  ++ + + A +  +V+ IVL  NG 
Sbjct: 1   MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            FS G D+   Q +    +   + D + +  ++  I    KP +A V+G A GGG  LA 
Sbjct: 60  HFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAA 119

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
            C   IA+   +    E+ LG+IP    +  + R +G   A  + + ++   +   + L 
Sbjct: 120 ACDIAIASTSARFCFSEVKLGLIPA-VISPYVVRAIGERAAKMLFMSAEVFDATRAYSLN 178

Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
           L+   V  + LL+ +  +A  I+ 
Sbjct: 179 LVQHCVPDDTLLEFTLKYASQISN 202

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  178 bits (452), Expect = 6e-50
 Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
           +    V +E   DGVA +T+      NA     V  ++   + A     V+  +L G   
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222

Query: 58  ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
                 G R FS G ++    +               +    V  +              
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
            +KP VAAV+G A+GGG +L +     +A+      LP    G+IPG     RL R  G 
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGP 341

Query: 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             + +++L  + I ++E     L+D VV  +EL          +  
Sbjct: 342 RVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  174 bits (442), Expect = 1e-49
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
           +D    +    P V NA     V  L    + A    DV  ++LTGNG         F  
Sbjct: 64  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123

Query: 64  GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D  +  +              DV+    + +  V  LI    K ++  V G A GGG 
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183

Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+ +  +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
             ++G ++AV    EL  V   WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  170 bits (434), Expect = 5e-49
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 12/203 (5%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+    
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71

Query: 72  KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
                     +  ++  L            +IE C KP++AA+ G  +GGG++L   C  
Sbjct: 72  SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 181
           R         + E+ +G+    G  QRLP+++G  S   E+   ++ + ++E    GL+ 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191

Query: 182 AVV-TSEELLKVSRLWALDIAAR 203
            V    + +L  +   A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  168 bits (428), Expect = 4e-48
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+ P +  +    GV  +TL  P   NAL+  ++A L + F      + V+A+VL  +G 
Sbjct: 22  MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+   +          +     +++   I+    P++A V G+A   G +L   
Sbjct: 82  AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A    +  +  + +G+     G   L R VG   A EM++  + +++++   LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ VV  + L          I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  167 bits (426), Expect = 6e-48
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               +++  +      II LINP   NAL       L +  E A    DV   ++  +G 
Sbjct: 6   RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
            FS G D     K  G        + S  +         V +      K ++  + G A+
Sbjct: 65  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124

Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           G    L   C    +   K  L  P   LG+I   G T  LP   G +   E ++ +K  
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184

Query: 170 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 203
             +   + G I                KV       +   
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  163 bits (414), Expect = 4e-46
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            + PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G 
Sbjct: 29  ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+    +  G  D       +   V+  I +   P++A V GLA   G +L   
Sbjct: 89  VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A+ K+    P + +G+     G   L R V    A+EM+   + I+++E    GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV   EL + +   A  IA+ 
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  169 bits (430), Expect = 5e-46
 Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 30/320 (9%)

Query: 12  NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
           N  VA + +               +N+  + +   L D  +       +V+ +VLT    
Sbjct: 28  NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87

Query: 60  R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           R F  G +I +          +     + +   + +         +AAV G   GGG EL
Sbjct: 88  RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147

Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIPGFGGTQRL--PRLVGLSKAIEMMLLSKSITS 171
           A+ C          + + LPE+  LGV+PG GG  R+   R V   +A     + + +  
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207

Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 224
           E      L+D VV   +  +  +  AL++AA+       +   +  + RTD+   L+   
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267

Query: 225 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281
               + +  R+          +  A +D I     +       +E       +  +    
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327

Query: 282 LVHVFFAQRATSKVPNVTDI 301
              VF  +     +      
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 90  VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
            +  I+   + + A +E G    G   ELA                 +  + L E+  G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426

Query: 141 IPGFGGTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 183
            P      RL  R    ++ ++ +   + ++I   E  +LGL+ A 
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  157 bits (398), Expect = 4e-44
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    + +      V  IT   P   N +   ++        +      V  +VL G   
Sbjct: 4   VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D     +    G         +  +   ++      ++ V G    GGL     
Sbjct: 62  VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA       L EL  G+ P       L R +G  KA  M L++K I+ +E  + GL
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPA-CVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           IDA     ++L   R   L +  
Sbjct: 181 IDAFDAESDVL--LRKHLLRLRR 201

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  158 bits (400), Expect = 1e-43
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 32/219 (14%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D VA IT   P   NA+       L    E A    DV  I+++G G  F  GFD++ + 
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102

Query: 72  KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
           +   +       + +V                                  +  C KP V 
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162

Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
            + G  + GG ++A+     IAA   ++G P + +  +P  G        +G  +A  ++
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL 219

Query: 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
                IT  +  + GL        +L   +      IAA
Sbjct: 220 FTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  152 bits (386), Expect = 2e-42
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +         G   VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG
Sbjct: 8   LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66

Query: 60  RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++             +  + + E+  ++  I + + P++AA++G    GG  L
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   +A P++   L E  +GV P       LP+L     A    L  +   +    +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           +GLI      E+L         D+  
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 1   MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
            A   V  +         V ++TL      NAL + +V  +  +         +  +VL 
Sbjct: 34  FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93

Query: 56  GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
           G+G + F  G D+        A    +          E  ++ L+    KP++   +G+ 
Sbjct: 94  GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           +GGGL L  G   ++    +++ +PE+T+G+ P  GG+  L R+ G    + + L +  +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212

Query: 170 TSEEGWKLGLIDAVVTSEEL 189
            + +   +GL D  +  ++ 
Sbjct: 213 NAADACYVGLADHYLNRDDK 232

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           AA  V +        +ITL  P   NAL + ++  +  + ++     +   I++ G GG+
Sbjct: 4   AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 61  -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G DI V  +   A           E ++N  +  C+KP VA + G+ +GGG+ L++
Sbjct: 63  AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R+A  K    +PE  +G+ P  GG   LPRL G      + L    +   + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181

Query: 179 LIDAVVTSEEL 189
           +    V SE+L
Sbjct: 182 IATHFVDSEKL 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 88/603 (14%), Positives = 189/603 (31%), Gaps = 147/603 (24%)

Query: 36  LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
           ++D  +   S++++  I+++ +   G      F         + QK     +V L  +  
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92

Query: 87  VELVVNLIEDCKKPIVAAVEGLA----LGGGLELAMGCHARIAAPKTQL--GLPELTLG- 139
             L+  +  + ++P +     +     L    ++    +     P  +L   L EL    
Sbjct: 93  F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 140 --VIPGFGGTQRLPRLVGLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEEL 189
             +I G  G+       G  K   A+++  LS  +  +      W  L   +   + E +
Sbjct: 152 NVLIDGVLGS-------G--KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPETV 198

Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249
           L+   L  L          RS H ++    +   +  L+  RL   K       ++ CL 
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCLL 248

Query: 250 VIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRGV 308
           V+            ++ AK +      + + + L+        T++   VTD  L     
Sbjct: 249 VLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAATT 286

Query: 309 RKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR-- 361
             +++      L    + +     L+     L +EV +    + +  I  ++R  +    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWD 345

Query: 362 --GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               +  DK    ++    VL+ +E++     + +     S  +   +            
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL----------S 393

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVRTERTSAQV---ILDL 472
           ++  +    D+ +V  K      ++          +P   LE+         +   I+D 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRA---FFPY----------SQSARLLVSLGVDVFR-I 518
                I K                    F+ +           +   L   + +D FR +
Sbjct: 453 Y---NIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFL 503

Query: 519 DSAIRSFGLPIGPFQ-----LLDLAGYGVAAATSKEF---DKAFPDRSFQSPLVDLLLKS 570
           +  IR               L  L  Y       K +   +    +R   + ++D L K 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNA-ILDFLPKI 555

Query: 571 GRN 573
             N
Sbjct: 556 EEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 97/289 (33%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
            +  ++ +      +  +    P  N L +     L           +V           
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259

Query: 59  GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
                 F+++   K+       L+      V   ++        +      L       L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP----GFG-----GTQRLPRL--VG---LSKAIEM 162
                 +    + Q  LP   L   P            G         V    L+  IE 
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 163 ML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA--------- 202
            L  L  +   +   +L +    A + +  L   S +W        + +           
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 203 -RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 249
            + K    S+       S+           L+ K    N    H++ +D
Sbjct: 419 KQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 476 GKIIKKVPVVVGNCTGFAVNRA--FFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGP 531
           G    + P +  +     +N     F     A  LV +GV     ID+AI+     P GP
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGNK 576
           F+L    G    A   +E  K F  + F+ +  +            
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAG 105

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 56/202 (27%)

Query: 15  VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
           V +  +   I                     A  +D+ +AI++  +  GGR     +I  
Sbjct: 10  VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
                                V  I+  K P++  V      A   G  +A+G H    A
Sbjct: 60  ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVG----------------LSKAIEMMLLSKSIT 170
           P T +G     LG        +  P +                   + A E +    S+T
Sbjct: 99  PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158

Query: 171 SEEGWKLGLIDAVVTS-EELLK 191
            EE  K G+I+ V     ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	589
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.91
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.87
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.83
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.82
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.81
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.8
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.78
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.78
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.75
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.73
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.73
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.7
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.7
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.7
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.7
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.68
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.68
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.68
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.67
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.67
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.64
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.63
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.62
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.59
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.59
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.59
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.58
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.58
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.57
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.55
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.55
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.55
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.53
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.53
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.53
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.52
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.52
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.51
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.51
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.5
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.49
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.49
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.48
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.48
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.47
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.47
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.47
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.46
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.45
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.45
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.44
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.44
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.44
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.44
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.43
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.43
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.41
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.38
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.38
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.37
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.35
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.34
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.33
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.32
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.31
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.3
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.3
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.26
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.26
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.24
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.21
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.21
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.2
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.19
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.18
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.17
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.17
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.14
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.13
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.1
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.69
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.07
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.07
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.06
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.01
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.99
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.96
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.9
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.89
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.88
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.86
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.81
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.8
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.78
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.78
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.77
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.77
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.76
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.75
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.75
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.74
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.74
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.74
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.74
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.72
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.69
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.69
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.68
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.65
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.64
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.6
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.58
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.57
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.55
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.54
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.53
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.52
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.5
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.49
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.48
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.47
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.46
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.46
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.45
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.45
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.44
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.44
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.43
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.42
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.42
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.41
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.41
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.41
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.39
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.38
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.37
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.37
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.36
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.34
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.33
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.32
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.31
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.27
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.27
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.26
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.25
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.24
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.22
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.21
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.2
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.2
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.18
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.18
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.16
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.12
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.11
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.11
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.09
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.07
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.07
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.05
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.05
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.0
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.96
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.95
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.95
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.94
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.93
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.93
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.87
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.87
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.82
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.82
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.82
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.75
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.73
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.72
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.7
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.67
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.65
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.63
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.58
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.58
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.57
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.55
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.55
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.54
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.53
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.52
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.49
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.49
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.46
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.46
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.43
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.42
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.41
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.4
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.39
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.38
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.37
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.33
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.33
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.32
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.3
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.3
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.29
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.27
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.27
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.27
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.26
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.26
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.24
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.24
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.24
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.23
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.23
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.23
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.23
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.22
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.21
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.21
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.21
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.17
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.14
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.09
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.08
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.06
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.03
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.0
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.97
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.96
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.95
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.94
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.93
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.93
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.92
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.9
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.9
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.89
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.88
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.86
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.84
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.81
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.8
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.78
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.76
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.76
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.68
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.67
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.66
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.64
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.64
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.63
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.62
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.62
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.61
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.57
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.53
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.5
4had_A	350	Probable oxidoreductase protein; structural genomi	96.44
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.44
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.42
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.41
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.41
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.37
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.37
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.35
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.32
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.28
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.26
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.23
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.21
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.17
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.17
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.17
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.15
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.1
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.1
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.09
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.08
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.06
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.06
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.02
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.95
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	95.94
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.91
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.87
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.86
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.86
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.86
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.82
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.82
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.81
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.81
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.74
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.74
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	95.73
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.72
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.7
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	95.68
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.68
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.66
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.65
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.64
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.63
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.51
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.5
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.47
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.46
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.46
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.43
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.42
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.28
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.18
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.14
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.13
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.1
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.08
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.04
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.02
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.02
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.98
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.93
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.9
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	94.9
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.79
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.75
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	94.74
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.72
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	94.7
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.68
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.65
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.64
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.62
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.57
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.5
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.42
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	94.38
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.36
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.35
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.32
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.3
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	94.29
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.29
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	94.28
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.27
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.24
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.21
1lnq_A	336	MTHK channels, potassium channel related protein;	94.19
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.16
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.13
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.12
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.1
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	94.07
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.03
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	93.99
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.99
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.99
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.93
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	93.85
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.83
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	93.82
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.81
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	93.79
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.74
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.7
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	93.63
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.59
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.59
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.53
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	93.51
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.46
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	93.4
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	93.4
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	93.37
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.29
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	93.28
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.22
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.1
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.09
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.08
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	93.05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	92.98
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	92.98
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.93
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	92.81
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.8
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.73
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.72
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	92.72
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.71
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	92.7
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.64
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.6
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.59
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.56
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.54
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.51
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.5

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=4.1e-112  Score=950.39  Aligned_cols=564  Identities=35%  Similarity=0.538  Sum_probs=505.9

Q ss_pred             EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHH
Q 007805            8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (589)
Q Consensus         8 ~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (589)
                      +++ +|+|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||+|+.||+|+|++++......       ....
T Consensus        25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-------~~~~   96 (742)
T 3zwc_A           25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-------LALG   96 (742)
T ss_dssp             EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-------SHHH
T ss_pred             EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-------HHHH
Confidence            445 78999999999999999999999999999999999999999999999999999999988653221       1234


Q ss_pred             HHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCC
Q 007805           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (589)
Q Consensus        88 ~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  167 (589)
                      .++ ++|.++||||||+|||+|+|||++|+|+||||||+++++|++||+++|++|++|++++|||++|..+|++|++||+
T Consensus        97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~  175 (742)
T 3zwc_A           97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK  175 (742)
T ss_dssp             HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence            566 7799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007805          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC  247 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  247 (589)
                      +++|+||+++||||+|+|++. .++|.++|++++++++...+..++...  ............+...+++.+++|||.++
T Consensus       176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~~~~A~~~~  252 (742)
T 3zwc_A          176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPVP--SLPNMDSVFAEAIAKVRKQYPGVLAPETC  252 (742)
T ss_dssp             CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCCC--CCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhccccc--ccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence            999999999999999998875 578999999999998876554433322  11122233444555667888899999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCC---CCCCCCCccceEEEEcCCCCcHHHH
Q 007805          248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT---DIGLKPRGVRKVAVIGGGLMGSGIA  324 (589)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~---~~~~~~~~~~kI~IIG~G~mG~~iA  324 (589)
                      +++++.+...+++++++.|.+.|.+++.|+++++++++|+++|++++.++..   ..+.+++.|+||+|||+|+||++||
T Consensus       253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA  332 (742)
T 3zwc_A          253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA  332 (742)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765421   2345678899999999999999999


Q ss_pred             HHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChHHHHH
Q 007805          325 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK  404 (589)
Q Consensus       325 ~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~~k~~  404 (589)
                      ..++++|++|+++|++++.++++.+.+...+.+.+.++..+..  .....+++.+++++.+++||+|||||||++++|++
T Consensus       333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~  410 (742)
T 3zwc_A          333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK  410 (742)
T ss_dssp             HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred             HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence            9999999999999999999999999999988887776554322  22346778888999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 007805          405 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       405 v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v  484 (589)
                      +|++|++++++++|++||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.++.+.+||+||
T Consensus       411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC-------
Q 007805          485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-------  557 (589)
Q Consensus       485 ~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~-------  557 (589)
                      +++|.||||+||++.++++||++++++|+++++||.++.++|||||||+++|++|||+.+++.+.++..+++.       
T Consensus       491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~  570 (742)
T 3zwc_A          491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVR  570 (742)
T ss_dssp             ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTT
T ss_pred             ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhh
Confidence            9999999999999999999999999999999999999988999999999999999999999999987654431       


Q ss_pred             ----CCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          558 ----SFQSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       558 ----~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                          +.+++++++|+++|++|+   +|||+|+.++
T Consensus       571 ~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~  605 (742)
T 3zwc_A          571 KRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPL  605 (742)
T ss_dssp             EETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTT
T ss_pred             hcccccccHHHHHHHHCCCccccCCCeeEECCCCC
Confidence                125679999999999999   9999998653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-105  Score=899.92  Aligned_cols=575  Identities=59%  Similarity=0.938  Sum_probs=493.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCC--
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~--   77 (589)
                      |+++.+.++..+++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......  
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            55667889833789999999999889999999999999999999999999999999 76 999999999885422110  


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ....+....+.++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|||++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~  161 (725)
T 2wtb_A           83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT  161 (725)
T ss_dssp             CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence            0112222233444 568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC-hh--hhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR-KP--WIRSLHRTDKLGSLSEAREVLKLARLQA  234 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|+++++.+ |.  +.+. .  .+.+........+..++.+.
T Consensus       162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~-~--~~~~~~~~~~~~~~~a~~~~  238 (725)
T 2wtb_A          162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSK-T--DKLPPLGEAREILTFAKAQT  238 (725)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGC-C--TTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhh-c--cccCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999872 22  2210 0  01112222333555566655


Q ss_pred             H-HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEE
Q 007805          235 K-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAV  313 (589)
Q Consensus       235 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~I  313 (589)
                      + ++++ ||||..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++..+.+.+++.|+||+|
T Consensus       239 ~~~~~g-~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~V  317 (725)
T 2wtb_A          239 LKRAPN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAI  317 (725)
T ss_dssp             HHHCTT-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEE
T ss_pred             HHhccC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEE
Confidence            4 4555 9999999999999999999999999999999999999999999999999999998762211335567899999


Q ss_pred             EcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEE
Q 007805          314 IGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE  393 (589)
Q Consensus       314 IG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIe  393 (589)
                      ||+|+||++||..++++|++|++||++++.++++.+.+++.+++++++|.+++.+.+..+++++.+++++++++||+|||
T Consensus       318 IGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIe  397 (725)
T 2wtb_A          318 IGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIE  397 (725)
T ss_dssp             ECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEE
T ss_pred             EcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEE
Confidence            99999999999999999999999999999999998889999999999999888777778889999999988999999999


Q ss_pred             eccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHH
Q 007805          394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLM  473 (589)
Q Consensus       394 avpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~  473 (589)
                      ||||+.++|+++++++.+++++++||+||||++++++++..+.++++++|+|||+|++.++++|+++++.|++++++.+.
T Consensus       398 aVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~  477 (725)
T 2wtb_A          398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLL  477 (725)
T ss_dssp             CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHh
Q 007805          474 TVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKA  553 (589)
Q Consensus       474 ~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~  553 (589)
                      ++++.+|++|++++|.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.
T Consensus       478 ~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~  557 (725)
T 2wtb_A          478 DVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIEN  557 (725)
T ss_dssp             HHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCCC-CCchHHHHHHHHcCCCCc---ccceeeC
Q 007805          554 FPDR-SFQSPLVDLLLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       554 ~~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y~  582 (589)
                      ++++ +.| +++++|+++|++|+   +|||+|+
T Consensus       558 ~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~  589 (725)
T 2wtb_A          558 FSERTYKS-MIIPLMQEDKRAGEATRKGFYLYD  589 (725)
T ss_dssp             SGGGCCCC-THHHHHHTTC--------------
T ss_pred             cCCccCCh-HHHHHHHHCCCceecCCceeEeCC
Confidence            9886 556 99999999999999   9999995

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=4.2e-105  Score=899.66  Aligned_cols=572  Identities=30%  Similarity=0.508  Sum_probs=512.8

Q ss_pred             CcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCC--c
Q 007805            4 PRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--D   78 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p--~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~--~   78 (589)
                      +++.++..+++|++||||||  +.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......  .
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~   84 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAE   84 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHH
Confidence            56888833789999999999  479999999999999999999999999999999 76 999999999986532111  1


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+....+.++ +++.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|++|++++|||++|..+
T Consensus        85 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~  163 (715)
T 1wdk_A           85 LIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (715)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence            111223344566 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc--ChhhhhhhhccC--CCCChHHHHH-HHHHHHH-
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR--RKPWIRSLHRTD--KLGSLSEARE-VLKLARL-  232 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~-  232 (589)
                      |++|++||++++|+||+++||||+|||++++++++.++|+++++.  |....+   +..  +...-..... .+..++. 
T Consensus       164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~k~~  240 (715)
T 1wdk_A          164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR---QPKLEKLKLNAIEQMMAFETAKGF  240 (715)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH---GGGGSCCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc---ccccCccccCchhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987  421111   000  1000011111 2444444 


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEE
Q 007805          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA  312 (589)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~  312 (589)
                      ..|+++++||||..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++.+. + +++.++||+
T Consensus       241 ~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~  318 (715)
T 1wdk_A          241 VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAA  318 (715)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEE
T ss_pred             HHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEE
Confidence            35689999999999999999999999999999999999999999999999999999999998764322 2 456789999


Q ss_pred             EEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEE
Q 007805          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVI  392 (589)
Q Consensus       313 IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI  392 (589)
                      |||+|+||++||..++++|++|++||+++++++.+...+++.+++++++|.+++.+.+..+++++.+++++++++||+||
T Consensus       319 VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVI  398 (715)
T 1wdk_A          319 VLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVV  398 (715)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEE
T ss_pred             EECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEE
Confidence            99999999999999999999999999999999999899999999999999999888888888999999998899999999


Q ss_pred             EeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHH
Q 007805          393 EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL  472 (589)
Q Consensus       393 eavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~  472 (589)
                      |||||+.++|+++++++.+++++++||+||||+++++++++.+.++++|+|+|||+|++.++++|+++++.|++++++.+
T Consensus       399 eaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~  478 (715)
T 1wdk_A          399 EAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATT  478 (715)
T ss_dssp             ECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHH
Q 007805          473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDK  552 (589)
Q Consensus       473 ~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~  552 (589)
                      .++++.+|++|++++|.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++++.+++
T Consensus       479 ~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~  558 (715)
T 1wdk_A          479 VAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAE  558 (715)
T ss_dssp             HHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             hCCCCCCch--HHHHHHHHcCCCCc---ccceeeC
Q 007805          553 AFPDRSFQS--PLVDLLLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       553 ~~~~~~~~~--~~l~~~v~~g~~G~---~Gfy~y~  582 (589)
                      .+++++.|+  +++++||++|++|+   +|||+|+
T Consensus       559 ~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          559 GFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             HCHHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred             hcCCccCCChHHHHHHHHhCchhhhcCCcEEEecc
Confidence            988776677  89999999999999   9999996

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=2.2e-56  Score=473.52  Aligned_cols=273  Identities=32%  Similarity=0.516  Sum_probs=258.0

Q ss_pred             CCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       304 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      ++++|+||+|||+|+||++||..++++|++|++||++++   ++.+.+++.+++++++|.++.++.+..+++++++++++
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence            457889999999999999999999999999999999998   45667888899999999999988888999999999998


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~  463 (589)
                      ++++||+|||||||++++|+++|++|.+++++++||+||||+++++++++.+++|++|+|+|||+|++.++++||+++..
T Consensus       127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~  206 (460)
T 3k6j_A          127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSH  206 (460)
T ss_dssp             GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSS
T ss_pred             HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHH-HcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHH
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV  542 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~-~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~  542 (589)
                      |++++++.+.++++.+||+|++++|.|||++||++.++++||+.++ ++|+++++||++++++|+|||||+++|++|||+
T Consensus       207 Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~~G~pmGPf~l~D~vGlD~  286 (460)
T 3k6j_A          207 TSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDV  286 (460)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTBSSCHHHHHHHHCTHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCHHHHHHHhchHH
Confidence            9999999999999999999999999999999999999999999999 779999999999988999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805          543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       543 ~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~  585 (589)
                      .+++.+.+    .  ..+++++++||++|++|+   +|||+|+.++
T Consensus       287 ~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~  326 (460)
T 3k6j_A          287 MEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKT  326 (460)
T ss_dssp             HHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTT
T ss_pred             HHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCC
Confidence            99998876    1  235689999999999999   9999998764

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-56  Score=440.76  Aligned_cols=250  Identities=28%  Similarity=0.373  Sum_probs=229.6

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      |.+|+ +|+|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......  ......
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~~   78 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPD--YEAHLR   78 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCC--HHHHTH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchh--hHHHHH
Confidence            67888 8899999999995 7999999999999999999999999999999999999999999987653221  222333


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ..+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|||++|..+|++|++
T Consensus        79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll  157 (254)
T 3hrx_A           79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL  157 (254)
T ss_dssp             HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence            445566 7799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|+||+++||||+|||++++++++.+++++|++.||.+++                                   
T Consensus       158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  202 (254)
T 3hrx_A          158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYA-----------------------------------  202 (254)
T ss_dssp             HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------------
T ss_pred             cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999986543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                       .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       203 -~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          203 -LTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             -HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence             45788999999999999999999999999999999999999999998863

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=8.2e-56  Score=443.73  Aligned_cols=254  Identities=25%  Similarity=0.326  Sum_probs=225.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (589)
                      +.|.+++ ++||++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........   .
T Consensus        15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   93 (274)
T 4fzw_C           15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG   93 (274)
T ss_dssp             -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred             ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence            6799999 8999999999996 699999999999999999999999999999999999999999998764322211   1


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ..+.+..+.++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  172 (274)
T 4fzw_C           94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA  172 (274)
T ss_dssp             HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence            11222344555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++++++.++|+++++.||.+++                              
T Consensus       173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  222 (274)
T 4fzw_C          173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLG------------------------------  222 (274)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       223 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          223 ------LIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             ------HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             ------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence                  55788999999999999999999999999999999999999999998863

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.5e-55  Score=438.29  Aligned_cols=250  Identities=30%  Similarity=0.454  Sum_probs=229.3

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 007805            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus         5 ~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      .+.+++ +++|++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......   ..+.
T Consensus         6 ~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~---~~~~   81 (258)
T 4fzw_A            6 ELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLA---ATLN   81 (258)
T ss_dssp             EEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHH---HHHT
T ss_pred             cEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhh---hHHH
Confidence            588999 8999999999996 6999999999999999999999999999999999999999999988643211   1112


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~  163 (589)
                      .....++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ll  160 (258)
T 4fzw_A           82 DTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMV  160 (258)
T ss_dssp             CSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHH
Confidence            2234556 679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (589)
                      +||++++|+||+++||||+|||++++++++.+++++|++.||.+++                                  
T Consensus       161 ltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------------  206 (258)
T 4fzw_A          161 LSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQ----------------------------------  206 (258)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred             HcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999986554                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                        .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       207 --~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          207 --AAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             --HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence              55788999999999999999999999999999999999999999998853

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=4.1e-54  Score=463.22  Aligned_cols=279  Identities=35%  Similarity=0.511  Sum_probs=265.6

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +.++||+|||+|+||++||..++++|++|++||+++++++++.+++.+.+.+++++|.++..+.+..+++++.+++++++
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999888899999999999889


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      ++||+||+||||+.++|+++++++.+++++++||+||||+++++.++..+.++++++|+|||+|++.++++|++++..|+
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts  162 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA  162 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~  543 (589)
                      +++++.+.++++.+|+++++++|.|||++||++.++++||+.++++|. ++++||+++ .++|||||||+++|++|||+.
T Consensus       163 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~  242 (483)
T 3mog_A          163 AEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVN  242 (483)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999987 899999999 689999999999999999999


Q ss_pred             HHHHHHHHHhC-CCC-CCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          544 AATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       544 ~~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      +++++.+++.+ +++ +.|++++++|+++|++|+   +|||+|+.+
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~  288 (483)
T 3mog_A          243 FAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAE  288 (483)
T ss_dssp             HHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSC
T ss_pred             HHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCC
Confidence            99999999886 343 448899999999999999   999999753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=9e-55  Score=441.21  Aligned_cols=240  Identities=23%  Similarity=0.364  Sum_probs=226.6

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHHhhcccccCCc-cC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~  384 (589)
                      .++||+|||+|+||++||..++.+|++|++||++++.++++.+++++.+.++.++|.++.. ..+..+++++.++++ ++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4789999999999999999999999999999999999999999999999999999988644 456677899999999 67


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t  464 (589)
                      +++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHh
Q 007805          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (589)
Q Consensus       465 ~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~  538 (589)
                      ++++++.+.++++.+|++|+++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+|   ||||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 899999999999999999999999997 999999999 788886   8999999999


Q ss_pred             chHHHHHH
Q 007805          539 GYGVAAAT  546 (589)
Q Consensus       539 Gld~~~~~  546 (589)
                      |+|+...+
T Consensus       245 G~~~~~~~  252 (319)
T 3ado_A          245 AEGMLSYC  252 (319)
T ss_dssp             TTSHHHHH
T ss_pred             CccHHHHH
Confidence            99876544

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=2e-54  Score=431.22  Aligned_cols=255  Identities=38%  Similarity=0.620  Sum_probs=230.7

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      ++++.+++ +++|++|+||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL   83 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred             ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence            47899999 89999999999966999999999999999999999999999999999999999999998653221111122


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l  162 (261)
T 3pea_A           84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM  162 (261)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            23334455 67999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                 
T Consensus       163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  209 (261)
T 3pea_A          163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATAR---------------------------------  209 (261)
T ss_dssp             HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986543                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                         .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       210 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~  259 (261)
T 3pea_A          210 ---AVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS  259 (261)
T ss_dssp             ---HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred             ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence               55788888888889999999999999999999999999999999998853

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=2.8e-54  Score=431.13  Aligned_cols=256  Identities=27%  Similarity=0.466  Sum_probs=232.0

Q ss_pred             CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~-~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |+|+.+.++ . +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus         5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~   82 (265)
T 3kqf_A            5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN-EE   82 (265)
T ss_dssp             --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC-HH
T ss_pred             ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC-HH
Confidence            678899999 7 8999999999996 6999999999999999999999999999999999 8999999999986532 11


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ....+....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  161 (265)
T 3kqf_A           83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  161 (265)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            1222233344566 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++++++.++|++|++.||.+++                            
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  213 (265)
T 3kqf_A          162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVR----------------------------  213 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                              .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       214 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3kqf_A          214 --------LAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK  263 (265)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                    56788999888999999999999999999999999999999999998853

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=6e-54  Score=428.81  Aligned_cols=257  Identities=21%  Similarity=0.310  Sum_probs=230.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|+.|.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence            8999999999 8999999999996 6999999999999999999999999999999999999999999998653222111


Q ss_pred             --cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        80 --~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                        .........++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~  157 (268)
T 3i47_A           80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER  157 (268)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence              11122334555 67999999999999999999999999999999999999999999999999999987 899999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  209 (268)
T 3i47_A          158 AAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVK----------------------------  209 (268)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986554                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~-~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                              .+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       210 --------~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  261 (268)
T 3i47_A          210 --------NSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE  261 (268)
T ss_dssp             --------HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred             --------HHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                    5578888888888877 68999999999999999999999999999998644

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.4e-54  Score=427.72  Aligned_cols=254  Identities=32%  Similarity=0.450  Sum_probs=231.5

Q ss_pred             CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~-v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+++.+.+++ +++ |++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   83 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ-   83 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence            7788899999 566 9999999997 69999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        .+......++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (263)
T 3moy_A           84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK  160 (263)
T ss_dssp             --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence              1112233455 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  211 (263)
T 3moy_A          161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGR-----------------------------  211 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986544                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                             .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       212 -------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          212 -------AVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             -------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence                   56788999888999999999999999999999999999999999998863

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=8.9e-54  Score=429.14  Aligned_cols=254  Identities=30%  Similarity=0.491  Sum_probs=229.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+++.+.+++ +++|++|+||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......  
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--   98 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD--   98 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence            7788899999 7899999999996 69999999999999999999999999999999999999999999986532111  


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      ......... + .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        99 ~~~~~~~~~-~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 AFTADFFAT-W-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             HHHHTTTGG-G-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHH-H-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            001111112 4 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------  226 (278)
T 3h81_A          177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAAR------------------------------  226 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986544                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       227 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  276 (278)
T 3h81_A          227 ------MAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT  276 (278)
T ss_dssp             ------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                  56788999888999999999999999999999999999999999998863

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.9e-54  Score=431.09  Aligned_cols=255  Identities=24%  Similarity=0.386  Sum_probs=229.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+++.|.+++ +++|++|+||||+ .|+||.+|+++|.++++++  |+++|+|||||.|++||+|+|++++...... ..
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~   88 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDAT-EG   88 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCHH-HH
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccChh-hH
Confidence            6678899999 8999999999996 7999999999999999999  5799999999999999999999987642111 11


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .......+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  167 (275)
T 3hin_A           89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM  167 (275)
T ss_dssp             HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence            11223344566 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~------------------------------  217 (275)
T 3hin_A          168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNF------------------------------  217 (275)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                            .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++..
T Consensus       218 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  268 (275)
T 3hin_A          218 ------AVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE  268 (275)
T ss_dssp             ------HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                  457788888888999999999999999999999999999999999998744

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=6.6e-53  Score=421.12  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=219.1

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhh---hccC
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG   75 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~---~~~~   75 (589)
                      || ++.+.++. +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.   ....
T Consensus         1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T 3fdu_A            1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN   79 (266)
T ss_dssp             -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence            65 57899999 8999999999996 79999999999999999999999999999999999999999999987   3222


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ..  .........++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  156 (266)
T 3fdu_A           80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG  156 (266)
T ss_dssp             CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence            11  12233445666 7799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++|++||++++|+||+++||||+|||  ++.+++.++|++|++.||.+++                          
T Consensus       157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~--------------------------  208 (266)
T 3fdu_A          157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLK--------------------------  208 (266)
T ss_dssp             HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999  8999999999999999987654                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                .+|++++... .+++++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       209 ----------~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~  258 (266)
T 3fdu_A          209 ----------QTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ  258 (266)
T ss_dssp             ----------HHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred             ----------HHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                      3456666554 4588999999999999999999999999999999998765

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.6e-53  Score=424.92  Aligned_cols=257  Identities=21%  Similarity=0.304  Sum_probs=229.7

Q ss_pred             CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~~~~--~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |+++ |.+++ +  ++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~   99 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE   99 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence            6655 88998 7  899999999996 69999999999999999999999999999999999999999999986521111


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ....+....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|..
T Consensus       100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~  177 (286)
T 3myb_A          100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK  177 (286)
T ss_dssp             HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence            1122233344566 67999999999999999999999999999999999999999999999999 788999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  229 (286)
T 3myb_A          178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA----------------------------  229 (286)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN  297 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~  297 (589)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.+.
T Consensus       230 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g~  281 (286)
T 3myb_A          230 --------MGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHTP  281 (286)
T ss_dssp             --------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCC
Confidence                    4577888888889999999999999999999999999999999999987553

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.1e-53  Score=425.06  Aligned_cols=256  Identities=24%  Similarity=0.333  Sum_probs=228.3

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ |+.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|+.||+|+|++++........
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   83 (265)
T 3swx_A            5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA   83 (265)
T ss_dssp             --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred             CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence            54 67899999 8999999999996 699999999999999999999999999999999999999999999875432211


Q ss_pred             ccccchhHHHHHHHHH-HhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l-~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ..+.....+.+ +++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        84 -~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  161 (265)
T 3swx_A           84 -SLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG  161 (265)
T ss_dssp             -CCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence             11111122334 457 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  213 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQ----------------------------  213 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986544                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       214 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3swx_A          214 --------ATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV  263 (265)
T ss_dssp             --------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                    45778888888889999999999999999999999999999999998753

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.2e-52  Score=422.64  Aligned_cols=255  Identities=25%  Similarity=0.361  Sum_probs=231.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc--
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--   79 (589)
                      ++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........  
T Consensus        16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   94 (279)
T 3g64_A           16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR   94 (279)
T ss_dssp             CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence            56799999 7999999999996 7999999999999999999999999999999999999999999998754332211  


Q ss_pred             -cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCC-CChhhhhhHhhhcCHH
Q 007805           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PGFGGTQRLPRLVGLS  157 (589)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~-p~~g~~~~l~~~~G~~  157 (589)
                       ..+....+.++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..
T Consensus        95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence             11222334555 67999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  225 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHA----------------------------  225 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986544                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                              .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       226 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  275 (279)
T 3g64_A          226 --------QTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQ  275 (279)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                    45788888888899999999999999999999999999999999998864

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=8.8e-53  Score=417.90  Aligned_cols=246  Identities=23%  Similarity=0.323  Sum_probs=225.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...       .+
T Consensus         6 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~~   77 (255)
T 3p5m_A            6 NGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------GA   77 (255)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------HH
T ss_pred             ceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------HH
Confidence            4689999 8999999999996 6999999999999999999999999999999999999999999987521       22


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ....+.++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l  156 (255)
T 3p5m_A           78 ADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRM  156 (255)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            33344566 77999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                 
T Consensus       157 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  203 (255)
T 3p5m_A          157 AMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFG---------------------------------  203 (255)
T ss_dssp             HHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986544                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                         .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       204 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  252 (255)
T 3p5m_A          204 ---WTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNF  252 (255)
T ss_dssp             ---HHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               5578888888889999999999999999999999999999999998875

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=3.3e-53  Score=422.91  Aligned_cols=256  Identities=21%  Similarity=0.305  Sum_probs=224.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCC-cCCCCchhhhh--c-cC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG   75 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F-~aG~Dl~~~~~--~-~~   75 (589)
                      ||++.|.+++ +++|++|+|||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|+.| |+|+|++++..  . ..
T Consensus         1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred             CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence            8999999999 899999999999 58999999999999999999999999999999999999 99999999875  2 11


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ......+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG  158 (263)
T ss_dssp             SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence            111122233344566 7799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecC-chHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (589)
                      ..+|++|++||++++|+||+++||||+||| ++++.+++.++|++|++.||.+++                         
T Consensus       159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  213 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIA-------------------------  213 (263)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            999999999999999999999999999999 999999999999999999986554                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                 .+|++++.....+++++++.|.+.+..++.|+|++|++++|++++++.+
T Consensus       214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~  262 (263)
T 3lke_A          214 -----------ATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH  262 (263)
T ss_dssp             -----------HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred             -----------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence                       4577888877778999999999999999999999999999999998764

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-52  Score=424.07  Aligned_cols=255  Identities=24%  Similarity=0.347  Sum_probs=224.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc----
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD----   78 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~----   78 (589)
                      ..+.++. +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........    
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            4678888 8999999999996 799999999999999999999999999999999999999999998865432211    


Q ss_pred             --ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCC-hhhhhhHhhhcC
Q 007805           79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVG  155 (589)
Q Consensus        79 --~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~-~g~~~~l~~~~G  155 (589)
                        ...+....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++++|
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG  181 (290)
T 3sll_A          103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG  181 (290)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence              111223344556 6799999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                          
T Consensus       182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  235 (290)
T 3sll_A          182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE--------------------------  235 (290)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999986554                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHHHHhHHHHHHHhhhccCCC
Q 007805          236 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~-~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                .+|++++.... .+++++++.|...+..++ .|+|++|++++|++||+|++.+
T Consensus       236 ----------~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g  288 (290)
T 3sll_A          236 ----------LTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRD  288 (290)
T ss_dssp             ----------HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCS
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                      55788888888 899999999999999999 9999999999999999988643

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.3e-53  Score=420.89  Aligned_cols=251  Identities=24%  Similarity=0.297  Sum_probs=190.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      +..+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (256)
T 3qmj_A            5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE   83 (256)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred             cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence            45788999 8999999999996 699999999999999999999999999999999999999999999865432222223


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      .....+.++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  162 (256)
T 3qmj_A           84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW  162 (256)
T ss_dssp             CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            334455666 7799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM--------------------------------  210 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999986544                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                          .+|++++.....+++++++.|...+..++.|+|++|++++|++||+
T Consensus       211 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          211 ----AVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             ----HHHHHHHCC-------------------------------------
T ss_pred             ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence                5577888888888999999999999999999999999999999985

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=2.3e-52  Score=417.46  Aligned_cols=253  Identities=26%  Similarity=0.380  Sum_probs=221.7

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ ++++.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++ ...  ... 
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~~~-   79 (265)
T 3rsi_A            5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--MVR-   79 (265)
T ss_dssp             ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred             CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--ccc-
Confidence            44 57899999 7999999999996 79999999999999999999999999999999999999999998 221  111 


Q ss_pred             ccccchhHHH-HHHHHH-H--hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhc
Q 007805           79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (589)
Q Consensus        79 ~~~~~~~~~~-~~~~~l-~--~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~  154 (589)
                      ...+...... ++ ..+ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 3rsi_A           80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI  158 (265)
T ss_dssp             -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred             hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence            1122222334 55 668 8  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (589)
Q Consensus       155 G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (589)
                      |..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                         
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  213 (265)
T 3rsi_A          159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVR-------------------------  213 (265)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999986544                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                 .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3rsi_A          214 -----------NAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT  263 (265)
T ss_dssp             -----------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred             -----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                       55788888888899999999999999999999999999999999998753

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.2e-52  Score=420.64  Aligned_cols=257  Identities=24%  Similarity=0.321  Sum_probs=229.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC---C
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A   76 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---~   76 (589)
                      |+ +.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T 1nzy_A            1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence            65 5788998 7899999999996 799999999999999999999999999999999999999999998754210   0


Q ss_pred             Ccc-cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ... ..+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (269)
T 1nzy_A           79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG  157 (269)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence            000 11222234555 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                          
T Consensus       158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  211 (269)
T 1nzy_A          158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV--------------------------  211 (269)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999886543                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       212 ----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~  262 (269)
T 1nzy_A          212 ----------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence                      456788888888899999999999999999999999999999999988654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=2.5e-52  Score=449.45  Aligned_cols=307  Identities=34%  Similarity=0.513  Sum_probs=267.2

Q ss_pred             CCHHHHhHHHHHHHhhhccCCCCC--CC-CCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          275 MLDTSRGLVHVFFAQRATSKVPNV--TD-IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       275 ~s~~~~~~i~af~~~r~~~~~~~~--~~-~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .|++++++++.|+.+|..+|.++.  +. .+.+++.+++|+|||+|.||++||..++++|++|++||++++.++.+.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            389999999999999999885431  11 133456789999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          352 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      ++.+...+++|.+++.+.+...  ...+++++.+++||+||+||||+.++|+++++++.+++++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKPK--LRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC--EEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH--hhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            8777777766643321111111  22366777889999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHc
Q 007805          432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL  511 (589)
Q Consensus       432 ~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~  511 (589)
                      +..+.++++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++++++++.|||++||++.++++|+++++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHH---HhCC-------CC-CCchHHHHHHHHcCCCCc---cc
Q 007805          512 GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFD---KAFP-------DR-SFQSPLVDLLLKSGRNGN---KG  577 (589)
Q Consensus       512 Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~---~~~~-------~~-~~~~~~l~~~v~~g~~G~---~G  577 (589)
                      |+++++||.+++++|+|+|||+++|.+|||+.+++++.+.   +.++       +. +.+++++++||++|++|+   +|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999999882   2211       11 123689999999999999   99


Q ss_pred             ceeeCC
Q 007805          578 FSFLFV  583 (589)
Q Consensus       578 fy~y~~  583 (589)
                      ||+|+.
T Consensus       319 fy~y~~  324 (463)
T 1zcj_A          319 WYQYDK  324 (463)
T ss_dssp             SEEESS
T ss_pred             eccCCC
Confidence            999964

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.3e-52  Score=415.79  Aligned_cols=252  Identities=25%  Similarity=0.387  Sum_probs=228.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.++. +++|++|+||||+.|++|.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++.. .. .....
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~-~~~~~   84 (265)
T 2ppy_A            8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-AD-PRFKT   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SC-HHHHH
T ss_pred             CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cc-hhHHH
Confidence            45788998 789999999999779999999999999999999999999999999 9999999999998754 11 11111


Q ss_pred             cchhH-HHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCc-eEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        82 ~~~~~-~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      +.... ++++ .++.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..+|
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  163 (265)
T 2ppy_A           85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA  163 (265)
T ss_dssp             HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence            22233 4566 67999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++                              
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  213 (265)
T 2ppy_A          164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVS------------------------------  213 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       214 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  262 (265)
T 2ppy_A          214 ------NIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW  262 (265)
T ss_dssp             ------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                  5577888888889999999999999999999999999999999998875

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=3.5e-53  Score=423.14  Aligned_cols=253  Identities=23%  Similarity=0.330  Sum_probs=228.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   84 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD   84 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSC
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHH
Confidence            46789999 8999999999996 699999999999999999999999999999999999999999999865432221111


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      +..  +.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        85 ~~~--~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  161 (265)
T 3qxz_A           85 FSA--SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE  161 (265)
T ss_dssp             CCS--CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred             HHH--HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            211  3444 5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      |++||++++|+||+++||||+|||++++++++.++|++|++. ||.+++                               
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~-------------------------------  210 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAA-------------------------------  210 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHH-------------------------------
Confidence            999999999999999999999999999999999999999999 886543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~--l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                           .+|++++.....+++++  ++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       211 -----~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~  262 (265)
T 3qxz_A          211 -----LTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA  262 (265)
T ss_dssp             -----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred             -----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence                 45677888777788888  999999999999999999999999999998864

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3e-52  Score=415.09  Aligned_cols=250  Identities=26%  Similarity=0.370  Sum_probs=222.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......   ..+
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~   78 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDH---GDV   78 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CH---HHH
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccch---hHH
Confidence            6789999 7899999999995 8999999999999999999999999999999999999999999987542211   111


Q ss_pred             ch-hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        83 ~~-~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      .. ..++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11 134556 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      +++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++                                
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  205 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIG--------------------------------  205 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999876543                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                          .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       206 ----~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  254 (257)
T 2ej5_A          206 ----LIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF  254 (257)
T ss_dssp             ----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence                4577888888889999999999999999999999999999999998875

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=3.4e-52  Score=414.91  Aligned_cols=253  Identities=30%  Similarity=0.466  Sum_probs=226.6

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      |+ +..+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--   77 (258)
T 2pbp_A            1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI--   77 (258)
T ss_dssp             ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred             CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence            55 46788888 7899999999996 7999999999999999999999999999999999999999999987542210  


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+.... +.+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  155 (258)
T 2pbp_A           78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR  155 (258)
T ss_dssp             HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence            01111112 445 6689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  206 (258)
T 2pbp_A          156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALR-----------------------------  206 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999876543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       207 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  255 (258)
T 2pbp_A          207 -------LIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF  255 (258)
T ss_dssp             -------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence                   4577888888889999999999999999999999999999999998775

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.5e-52  Score=422.25  Aligned_cols=251  Identities=25%  Similarity=0.330  Sum_probs=223.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC----CC
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG   77 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~----~~   77 (589)
                      |+.+.+++ +++|++||||||+.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.....    ..
T Consensus         8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A            8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            78899999 89999999999999999999999999999999999999999999998 68999999998863210    00


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeC-CceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                      .........+.++ .++.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|.
T Consensus        87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  165 (287)
T 3gkb_A           87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR  165 (287)
T ss_dssp             TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence            1112223344566 679999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                           
T Consensus       166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~---------------------------  218 (287)
T 3gkb_A          166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIE---------------------------  218 (287)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHH---------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999987654                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh--ccC
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA--TSK  294 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~--~~~  294 (589)
                               .+|++++..   ...++++.|...+..++.|+|++|++++|++||+  |++
T Consensus       219 ---------~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f  266 (287)
T 3gkb_A          219 ---------AAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAG  266 (287)
T ss_dssp             ---------HHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHH
T ss_pred             ---------HHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCch
Confidence                     345566543   3468899999999999999999999999999988  543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=2.2e-52  Score=423.07  Aligned_cols=273  Identities=28%  Similarity=0.394  Sum_probs=254.5

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcC-CCCHHHHHHHhhcccccCCc-c
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      +.++||+|||+|.||++||..++++|++|++||+++++++++.+.+.+.+.+++++| .++..+.+....+++.++++ +
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            357899999999999999999999999999999999999999999999999999888 78877777778888888898 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~  463 (589)
                      .+++||+||+|+|++.+.++.+++++.+++++++|++||||++++++++..+.++.+++|+|||+|++.++++|++++..
T Consensus        82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~  161 (283)
T 4e12_A           82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTK  161 (283)
T ss_dssp             HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTT
T ss_pred             HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCC
Confidence            68999999999999999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhch
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY  540 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gl  540 (589)
                      |++++++.++++++.+|++++++ ++.|||++||++.++++||++++++|+ ++++||+++ .++|+|+|||+++|++||
T Consensus       162 t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gl  241 (283)
T 4e12_A          162 TDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGL  241 (283)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccH
Confidence            99999999999999999999999 899999999999999999999999986 999999999 799999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCC-CCchHHHHHHHHcCCCCc---ccceee
Q 007805          541 GVAAATSKEFDKAFPDR-SFQSPLVDLLLKSGRNGN---KGFSFL  581 (589)
Q Consensus       541 d~~~~~~~~l~~~~~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y  581 (589)
                      |++++++++   ..++. +.|++++++||++|++|+   +|||+|
T Consensus       242 d~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          242 TTAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            999999983   22222 237889999999999999   999999

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=2.8e-52  Score=414.19  Aligned_cols=249  Identities=28%  Similarity=0.444  Sum_probs=226.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+ +.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   82 (256)
T 3trr_A            5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE   82 (256)
T ss_dssp             CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred             CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence            54 5799999 8999999999996 7999999999999999999999999999999999999999999998753221111


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .   ..  . + ..+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        83 ~---~~--~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           83 R---GL--G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             T---EE--T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             h---hh--h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            1   11  1 2 234 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVA------------------------------  204 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       205 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          205 ------ATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             ------HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                  55788999988999999999999999999999999999999999998864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.4e-52  Score=422.02  Aligned_cols=256  Identities=31%  Similarity=0.376  Sum_probs=236.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .-+||+|||+|+||++||..++ +|++|++||+++++++++.+.+                 .+..+++++.+++++.++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l-----------------~~~~~~~i~~~~~~~~~~   72 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI-----------------PEELLSKIEFTTTLEKVK   72 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS-----------------CGGGGGGEEEESSCTTGG
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH-----------------HHHHhCCeEEeCCHHHHc
Confidence            3478999999999999999999 9999999999999988875530                 123346788888886799


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~  466 (589)
                      +||+||||+||+.++|+.+|.++.+.  +++|++||||++++++++..+.++.|++|+|||+|++.++++|+++++.|++
T Consensus        73 ~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~  150 (293)
T 1zej_A           73 DCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDS  150 (293)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCH
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCH
Confidence            99999999999999999999999877  8999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCC---cHHHHHHHhchHH
Q 007805          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQLLDLAGYGV  542 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~  542 (589)
                      ++++.+.++++.+|++|++++|.  |++||++.++++||+.++++|+++++||.++ .++|+|+   |||+++|++|||+
T Consensus       151 ~~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~  228 (293)
T 1zej_A          151 KTVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDV  228 (293)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHH
Confidence            99999999999999999999987  9999999999999999999999999999999 7999999   9999999999999


Q ss_pred             HHHHHHHHHHhCCC-CCCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805          543 AAATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGN---KGFSFLFVF  584 (589)
Q Consensus       543 ~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~  584 (589)
                      ++++++.+++.+++ ++.|++++++||++|++|+   +|||+|+++
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~~  274 (293)
T 1zej_A          229 AYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPK  274 (293)
T ss_dssp             HHHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCTT
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCcc
Confidence            99999999999887 4558899999999999999   999999764

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.4e-52  Score=421.41  Aligned_cols=252  Identities=21%  Similarity=0.304  Sum_probs=221.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-------
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-------   75 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-------   75 (589)
                      +.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....       
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            5799999 7999999999996 799999999999999999999999999999999999999999998865332       


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      ......+. ..+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|
T Consensus        90 ~~~~~~~~-~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG  166 (274)
T 3tlf_A           90 LSTYDQWE-APQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP  166 (274)
T ss_dssp             TCSGGGGS-CCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred             hhHHHHHH-HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence            11111111 222344 568899999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHcCC--CCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (589)
Q Consensus       156 ~~~a~~l~ltg~--~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (589)
                      ..+|++|++||+  +++|+||+++||||+|||++++++++.++|++|++.||.+++                        
T Consensus       167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------  222 (274)
T 3tlf_A          167 RSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVR------------------------  222 (274)
T ss_dssp             HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------
Confidence            999999999999  999999999999999999999999999999999999986544                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                  .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       223 ------------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  272 (274)
T 3tlf_A          223 ------------GTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ  272 (274)
T ss_dssp             ------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                        55788888888899999999999999999999999999999999998753

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=5.7e-52  Score=429.26  Aligned_cols=292  Identities=19%  Similarity=0.264  Sum_probs=231.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC--c
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--~   78 (589)
                      ++.|.+++ +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++.......  .
T Consensus         8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~   86 (353)
T 4hdt_A            8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE   86 (353)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence            57899999 8999999999996 7999999999999999999999999999999998 6999999999986532221  1


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+....+.++ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~  164 (353)
T 4hdt_A           87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL  164 (353)
T ss_dssp             HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred             HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence            122223334555 6799999999999999999999999999999999999999999999999999999999999999 69


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh-------------hhhccCCCCChHHHHH
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR-------------SLHRTDKLGSLSEARE  225 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~-------------~~~~~~~~~~~~~~~~  225 (589)
                      |++|++||++++|+||+++||||+|||++++.+.+++++.+..........             .+.+.-....+....+
T Consensus       165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~  244 (353)
T 4hdt_A          165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIA  244 (353)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999999999999988764322110000             0000000111111111


Q ss_pred             HHH-----HHHHHHHH-hCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHHHHhHHHHHH--HhhhccCCC
Q 007805          226 VLK-----LARLQAKK-TAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATSKVP  296 (589)
Q Consensus       226 ~~~-----~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~~s~~~~~~i~af~--~~r~~~~~~  296 (589)
                      .++     .+....++ ......+...+|+.++++... +++++++.|.+.+..++.|+|++|+++||+  +||+|++.|
T Consensus       245 ~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p  324 (353)
T 4hdt_A          245 ALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP  324 (353)
T ss_dssp             HHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred             HHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence            111     11122222 334445788899999998875 799999999999999999999999999999  999999876


Q ss_pred             C
Q 007805          297 N  297 (589)
Q Consensus       297 ~  297 (589)
                      .
T Consensus       325 ~  325 (353)
T 4hdt_A          325 A  325 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=3.9e-52  Score=415.18  Aligned_cols=253  Identities=21%  Similarity=0.276  Sum_probs=227.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g-~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |+|+.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+ +|+||||| .| ++||+|+|++++.......
T Consensus         1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T 1ef8_A            1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh
Confidence            8899999999 7899999999996 79999999999999999999999 99999999 98 8999999999875432111


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       . ......++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        79 -~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  155 (261)
T 1ef8_A           79 -L-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -T-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -H-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence             1 1222345666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  207 (261)
T 1ef8_A          156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999876543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~--~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|++++.....+++++++.|.+.+.  .++.|+|++|++++|++||+|++
T Consensus       208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~  258 (261)
T 1ef8_A          208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence                    45677888777888999999999999  99999999999999999998875

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=4.4e-53  Score=428.32  Aligned_cols=256  Identities=25%  Similarity=0.333  Sum_probs=184.0

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhh---ccCCC
Q 007805            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG   77 (589)
Q Consensus         3 ~~~~~~~~~~~-~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~---~~~~~   77 (589)
                      ++.|.+++ ++ +|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..   .....
T Consensus        28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            47799999 77 99999999996 699999999999999999999999999999999999999999998864   11110


Q ss_pred             ----cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh
Q 007805           78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (589)
Q Consensus        78 ----~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~  153 (589)
                          ....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  185 (298)
T 3qre_A          107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL  185 (298)
T ss_dssp             --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence                1111111122334 56889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHHHHHHHHHHHH
Q 007805          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (589)
Q Consensus       154 ~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (589)
                      +|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++. ||.+++                       
T Consensus       186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~-----------------------  242 (298)
T 3qre_A          186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMA-----------------------  242 (298)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHH-----------------------
T ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHH-----------------------
Confidence            99999999999999999999999999999999999999999999999998 876543                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                   .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.+
T Consensus       243 -------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~  293 (298)
T 3qre_A          243 -------------VIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPS  293 (298)
T ss_dssp             -------------HHHHHHHGGGGC---------------------------------------
T ss_pred             -------------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                         557889988888999999999999999999999999999999999998754

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.9e-52  Score=417.67  Aligned_cols=253  Identities=21%  Similarity=0.339  Sum_probs=225.7

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ...+.++. +++|++|+||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++...........
T Consensus        32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~  110 (287)
T 2vx2_A           32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAE  110 (287)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHH
T ss_pred             CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHH
Confidence            35788998 7899999999996 699999999999999999999999999999999999999999998754221111111


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      +.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..+|++
T Consensus       111 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~  188 (287)
T 2vx2_A          111 VFQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE  188 (287)
T ss_dssp             HHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHH
Confidence            222334555 678999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------------  236 (287)
T 2vx2_A          189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS--------------------------------  236 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999886543                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                          .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       237 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f  285 (287)
T 2vx2_A          237 ----LGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW  285 (287)
T ss_dssp             ----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                4567888888888999999999999999999999999999999998875

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=6.1e-52  Score=414.24  Aligned_cols=253  Identities=23%  Similarity=0.241  Sum_probs=225.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhc-c-CCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~-~-~~~~~~   80 (589)
                      ++.+.+++++++|++|+||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++ +... . ......
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~   87 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL   87 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence            466888874578999999999999999999999999999999999999999999999999999999 7542 1 101011


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            1222344556 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +|++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++                               
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  215 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH-------------------------------  215 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999876543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                           .+|++++.+... ++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       216 -----~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  263 (264)
T 1wz8_A          216 -----HTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  263 (264)
T ss_dssp             -----HHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence                 446777777777 899999999999999999999999999999998764

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-51  Score=411.51  Aligned_cols=253  Identities=18%  Similarity=0.179  Sum_probs=217.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-CCc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~   78 (589)
                      |+++.+.+++ +++|++||||||+ +|++|.+|+.+|.+++++++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence            6788899999 8999999999996 6999999999999999999986 6999999999999999999999876421 111


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ..........++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~  159 (267)
T 3hp0_A           82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK  159 (267)
T ss_dssp             SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence            223344455666 779999999999999999999999999999999999999999999999999875 778999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||+.+  +.+.+++++|++.||.+++                             
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~-----------------------------  208 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIA-----------------------------  208 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999998654  3478999999999986554                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                             .+|++++... ..++++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       209 -------~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~  258 (267)
T 3hp0_A          209 -------HYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED  258 (267)
T ss_dssp             -------HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred             -------HHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence                   4466676653 3467788899999999999999999999999999999765

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=2.1e-51  Score=413.19  Aligned_cols=255  Identities=20%  Similarity=0.310  Sum_probs=227.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---c
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---D   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~   78 (589)
                      |+++.+++++++|++|+||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   .
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            6788999855789999999996 79999999999999999999999999999999999999999999886431110   0


Q ss_pred             -c------cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHh
Q 007805           79 -V------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP  151 (589)
Q Consensus        79 -~------~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~  151 (589)
                       .      ..+....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~  160 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             hhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHH
Confidence             0      01112233455 678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCH-HHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHH
Q 007805          152 RLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL  229 (589)
Q Consensus       152 ~~~G~-~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (589)
                      +++|. .+|++|++||++++|+||+++||||+|||+ +++.+++.++|++|++.||.+++                    
T Consensus       161 r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~--------------------  220 (275)
T 1dci_A          161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ--------------------  220 (275)
T ss_dssp             GTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH--------------------
T ss_pred             HHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHH--------------------
Confidence            99999 999999999999999999999999999999 99999999999999999986544                    


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh---hhccC
Q 007805          230 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSK  294 (589)
Q Consensus       230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~---r~~~~  294 (589)
                                      .+|++++.+...+++++++.|...+..++.|+|++|++++|++|   |+|++
T Consensus       221 ----------------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f  272 (275)
T 1dci_A          221 ----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             ----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             ----------------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                            45778888888889999999999999999999999999999999   88775

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=3.7e-52  Score=415.96  Aligned_cols=253  Identities=27%  Similarity=0.412  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      ++.+.+++ +++|++|+||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++......... 
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~-   85 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHP-   85 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCT-
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhH-
Confidence            46799999 8999999999995 7999999999999999999999999999999999 599999999998754322211 


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .........+ . ..++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        86 ~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  163 (267)
T 3r9t_A           86 DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAM  163 (267)
T ss_dssp             TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHH
T ss_pred             HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHH
Confidence            1011100112 1 2489999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +|++||++++|+||+++||||+|||++++++++.++|++|++.||.+++                               
T Consensus       164 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------  212 (267)
T 3r9t_A          164 RLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQ-------------------------------  212 (267)
T ss_dssp             HHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999986544                               


Q ss_pred             ChhHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          241 MPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       241 ~~a~~~~~~~---~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                           .+|++   ++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       213 -----~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  265 (267)
T 3r9t_A          213 -----ASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ  265 (267)
T ss_dssp             -----HHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                 45677   777777889999999999999999999999999999999998753

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=9.3e-52  Score=414.53  Aligned_cols=254  Identities=24%  Similarity=0.299  Sum_probs=216.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CCCcCCCCchhhhhccC
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVHG   75 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-----~g-~~F~aG~Dl~~~~~~~~   75 (589)
                      |+.+.++. +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||     .| ++||+|+|++++.....
T Consensus         9 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~   87 (275)
T 4eml_A            9 YDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY   87 (275)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence            67799999 8999999999996 69999999999999999999999999999999     88 49999999998864211


Q ss_pred             CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                      .............++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG  166 (275)
T 4eml_A           88 IDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG  166 (275)
T ss_dssp             -------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             cchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhH
Confidence            111111111234556 6799999999999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                          
T Consensus       167 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  220 (275)
T 4eml_A          167 QKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR--------------------------  220 (275)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999986554                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                .+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       221 ----------~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  269 (275)
T 4eml_A          221 ----------CLKAAFNADCD-GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFS  269 (275)
T ss_dssp             ----------HHHHHHHHTTS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred             ----------HHHHHHHhhhc-cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                      44566666543 23344457788889999999999999999999998853

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=6.7e-51  Score=416.37  Aligned_cols=279  Identities=32%  Similarity=0.496  Sum_probs=258.6

Q ss_pred             CCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-----HHHHHhhcccc
Q 007805          304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLKG  378 (589)
Q Consensus       304 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~i~~  378 (589)
                      +.++|+||+|||+|.||++||..|+++|++|++||+++++++.+.+.+.+.++.++++|.++..     ..+....+++.
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3456789999999999999999999999999999999999999988888888888899887654     34445567888


Q ss_pred             cCCcc-CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee
Q 007805          379 VLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE  457 (589)
Q Consensus       379 ~~~~~-~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve  457 (589)
                      +++++ ++++||+||+|||++.++|+++++++.+++++++||+||+|++++++++..+.++++++++||++|+..++++|
T Consensus        91 ~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~  170 (302)
T 1f0y_A           91 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE  170 (302)
T ss_dssp             ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred             ecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence            88884 89999999999999999999999999999999999999999999999988888889999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLL  535 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~  535 (589)
                      +++++.+++++++.+.++++.+|+.++++++.|||++||++.++++|+++++++|. ++++||.++ .++|||+|||+++
T Consensus       171 i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~  250 (302)
T 1f0y_A          171 VIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL  250 (302)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999985 999999999 7999999999999


Q ss_pred             HHhchHHHHHHHHHHHHhC-CCC-CCchHHHHHHHHcCCCCc---ccceeeC
Q 007805          536 DLAGYGVAAATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       536 D~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y~  582 (589)
                      |.+|+|+++++++.+++.+ +++ +.|+++|++|+++|++|+   +|||+|+
T Consensus       251 D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            9999999999999999998 775 558999999999999999   9999994

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.8e-52  Score=414.38  Aligned_cols=249  Identities=27%  Similarity=0.328  Sum_probs=207.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.+++ +++|++|+||||+ +|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++............
T Consensus        11 ~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (262)
T 3r9q_A           11 PAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHG   89 (262)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTS
T ss_pred             CEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhh
Confidence            3588999 8899999999996 6999999999999999999999999999999999999999999998654322111000


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                         ...++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus        90 ---~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l  165 (262)
T 3r9q_A           90 ---PGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDL  165 (262)
T ss_dssp             ---SCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             ---hhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHH
Confidence               11122 34568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                 
T Consensus       166 ~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  212 (262)
T 3r9q_A          166 ILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVR---------------------------------  212 (262)
T ss_dssp             HHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred             HHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986554                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                         .+|++++.....+++++++.|.+ +..++.| |++|++++|++||+|.+.
T Consensus       213 ---~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~  260 (262)
T 3r9q_A          213 ---ADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA  260 (262)
T ss_dssp             ---HHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence               55788898888999999999999 9999999 999999999999998863

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=4.6e-52  Score=418.26  Aligned_cols=254  Identities=25%  Similarity=0.345  Sum_probs=216.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++++.++. +++|++|+||||+ .|+||.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++...........
T Consensus        19 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   97 (278)
T 4f47_A           19 GPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD   97 (278)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred             CCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH
Confidence            35688999 8999999999996 799999999999999999999999999999999999999999998865432211110


Q ss_pred             cchhHHHHHHHHHH---hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           82 MPDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        82 ~~~~~~~~~~~~l~---~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                       ......++ +.+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        98 -~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  175 (278)
T 4f47_A           98 -GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTV  175 (278)
T ss_dssp             ----CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHH
T ss_pred             -HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence             00111222 3455   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  226 (278)
T 4f47_A          176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQ-----------------------------  226 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                             .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       227 -------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~  276 (278)
T 4f47_A          227 -------AILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ  276 (278)
T ss_dssp             -------HHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                   56788999888899999999999999999999999999999999998863

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.2e-51  Score=411.72  Aligned_cols=250  Identities=25%  Similarity=0.388  Sum_probs=218.5

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      +++.+.+++ +++|++|+||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (265)
T 3qxi_A           13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG   91 (265)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence            367899999 7999999999996 79999999999999999999999999999999999999999999986533211111


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                        ...  . + ..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        92 --~~~--~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  164 (265)
T 3qxi_A           92 --RGL--G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM  164 (265)
T ss_dssp             --TEE--T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred             --hhh--h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence              011  1 2 22334 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                               
T Consensus       165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------  213 (265)
T 3qxi_A          165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVA-------------------------------  213 (265)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999986543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                           .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       214 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3qxi_A          214 -----ATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT  263 (265)
T ss_dssp             -----HHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                 45778888888899999999999999999999999999999999998864

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=4.2e-52  Score=416.66  Aligned_cols=252  Identities=22%  Similarity=0.266  Sum_probs=216.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cccc
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (589)
                      ++++.+++++++|++|+||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus        12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   91 (272)
T 3qk8_A           12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR   91 (272)
T ss_dssp             CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence            578999994458999999999999999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      +....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (272)
T 3qk8_A           92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY  170 (272)
T ss_dssp             HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            223344556 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++++++.++|++|++.||.+++                                
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  218 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR--------------------------------  218 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999987654                                


Q ss_pred             hhHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          242 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~---~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                          .+|++++....   .+++..++.|    ..++.|+|++|++++|++||+|++.
T Consensus       219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~  267 (272)
T 3qk8_A          219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFT  267 (272)
T ss_dssp             ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC-
T ss_pred             ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                33445544332   2344444444    5789999999999999999998864

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.9e-51  Score=413.69  Aligned_cols=252  Identities=23%  Similarity=0.290  Sum_probs=210.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc--
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (589)
                      +|+.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++ +|||||.|+.||+|+|++++........  
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  101 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE  101 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence            467889999 7899999999995 7999999999999999999999999 9999999999999999998754221110  


Q ss_pred             -ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ...+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus       102 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  180 (280)
T 2f6q_A          102 KAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  180 (280)
T ss_dssp             HHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence             001112234555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  232 (280)
T 2f6q_A          181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR----------------------------  232 (280)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhc
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~  292 (589)
                              .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus       233 --------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          233 --------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             --------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             --------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence                    44677777766678999999999999999999999999999999976

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=5.4e-51  Score=409.13  Aligned_cols=252  Identities=26%  Similarity=0.351  Sum_probs=218.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+.+.+++ +++|++|+||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+ +||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~-~~   89 (273)
T 2uzf_A           12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG-ED   89 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------C-CS
T ss_pred             CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccch-hh
Confidence            46688998 7899999999995 89999999999999999999999999999999998 999999999875421111 11


Q ss_pred             cc-chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~-~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .+ ......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  168 (273)
T 2uzf_A           90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA  168 (273)
T ss_dssp             SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred             hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            11 11133555 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T 2uzf_A          169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR------------------------------  218 (273)
T ss_dssp             HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~-~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                            .+|++++  ...++.++++.|. +.+..++.|+|++|++++|++||+|++.
T Consensus       219 ------~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~  267 (273)
T 2uzf_A          219 ------FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD  267 (273)
T ss_dssp             ------HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCS
T ss_pred             ------HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCC
Confidence                  3455665  2346889999999 9999999999999999999999998753

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=3e-51  Score=411.59  Aligned_cols=255  Identities=19%  Similarity=0.286  Sum_probs=206.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--CCc-
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD-   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~-   78 (589)
                      |+.+.+++ +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....  ... 
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   86 (276)
T 2j5i_A            8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL   86 (276)
T ss_dssp             CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred             CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence            56788998 7899999999995 799999999999999999999999999999999999999999998753211  110 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+.......+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  166 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ  166 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence            00111111122125578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-----------------------------  217 (276)
T 2j5i_A          167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLR-----------------------------  217 (276)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986554                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-HHHhHHHHHHHhh--hccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR--ATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~--~~s~-~~~~~i~af~~~r--~~~~  294 (589)
                             .+|++++.....+++++++.|.+.+..+  +.|+ |++|++++|++||  +|++
T Consensus       218 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~  271 (276)
T 2j5i_A          218 -------AAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGL  271 (276)
T ss_dssp             -------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCc
Confidence                   4577888888888999999998887776  7799 9999999999998  5544

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=4e-51  Score=412.19  Aligned_cols=257  Identities=25%  Similarity=0.345  Sum_probs=217.5

Q ss_pred             CCCCcEEEEEec-CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCC-
Q 007805            1 MAAPRVTMEVGN-DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGA-   76 (589)
Q Consensus         1 M~~~~~~~~~~~-~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~-   76 (589)
                      |+++++.++. + ++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|+ +||+|+|++++...... 
T Consensus        24 ~~~~~v~~~~-~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           24 EGFEDIRYEK-STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             TTCSSEEEEE-ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCeEEEEE-ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            4578899999 6 899999999996 69999999999999999999999999999999995 99999999987542211 


Q ss_pred             CcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                      ............++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~  181 (289)
T 3t89_A          103 DDSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ  181 (289)
T ss_dssp             -------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence            11111112234556 77999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                           
T Consensus       182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~---------------------------  234 (289)
T 3t89_A          182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR---------------------------  234 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------
T ss_pred             HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999986554                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                               .+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       235 ---------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~  284 (289)
T 3t89_A          235 ---------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK  284 (289)
T ss_dssp             ---------HHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred             ---------HHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                     44666766543 233444578888889999999999999999999998643

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=2.6e-51  Score=411.11  Aligned_cols=247  Identities=21%  Similarity=0.280  Sum_probs=222.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (589)
                      +.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~  106 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK  106 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence            4688999 8999999999997 79999999999999999999999999999999999999999999886532111 1112


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      +....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus       107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  185 (276)
T 3rrv_A          107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE  185 (276)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            223344566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      +++||++++|+||+++||||+||  +++.+++.++|++|++.||.+++                                
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~--------------------------------  231 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVE--------------------------------  231 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            99999999999999999999999  88999999999999999986554                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhh
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r  290 (589)
                          .+|++++.....+++++++.|...+..++.|+|++|++.+|++||
T Consensus       232 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          232 ----STKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence                456777777777789999999999999999999999999999987

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.7e-51  Score=415.39  Aligned_cols=256  Identities=21%  Similarity=0.289  Sum_probs=218.5

Q ss_pred             CCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 007805            2 AAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (589)
                      +|+.+.++. +++|++|+|| ||+ .|+||.+|+.+|.+++++++.|+. |+|||||.|+.||+|+|++++.......  
T Consensus        21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   98 (291)
T 2fbm_A           21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN   98 (291)
T ss_dssp             CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence            467899999 8899999999 685 799999999999999999998875 9999999999999999999875421110  


Q ss_pred             -cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (589)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~  156 (589)
                       ....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  177 (291)
T 2fbm_A           99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  177 (291)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence             0111122234555 67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (589)
Q Consensus       157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (589)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                           
T Consensus       178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------  230 (291)
T 2fbm_A          178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLE---------------------------  230 (291)
T ss_dssp             HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHH---------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999886543                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHH-HHhhhccCCC
Q 007805          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP  296 (589)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af-~~~r~~~~~~  296 (589)
                               .+|++++.....+++++++.|.+.+..++.|+|++|++.+| ++||+|++.+
T Consensus       231 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~  282 (291)
T 2fbm_A          231 ---------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP  282 (291)
T ss_dssp             ---------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred             ---------HHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                     45677877777778999999999999999999999999999 9999988643

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.2e-51  Score=411.28  Aligned_cols=251  Identities=22%  Similarity=0.309  Sum_probs=213.4

Q ss_pred             EEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccc
Q 007805            6 VTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus         6 ~~~~~~-~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      +.+..+ +++|++|+||||+.|++|.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++.... ......+.
T Consensus         5 v~v~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~-~~~~~~~~   83 (260)
T 1sg4_A            5 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAGYW   83 (260)
T ss_dssp             EEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHHHH
T ss_pred             EEEEEEecCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC-HHHHHHHH
Confidence            444432 6889999999998999999999999999999999999999999999 78999999999875321 11111122


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe--CCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~--~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      ...+.++ .++.++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (260)
T 1sg4_A           84 KAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER  162 (260)
T ss_dssp             HHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHH
Confidence            2334556 67999999999999999999999999999999999  89999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (260)
T 1sg4_A          163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ--------------------------------  210 (260)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999876543                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                          .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||++++
T Consensus       211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          211 ----LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             ----HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             ----HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence                3466777766667888899999999999999999999999999999875

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=2.3e-51  Score=409.54  Aligned_cols=253  Identities=20%  Similarity=0.270  Sum_probs=223.9

Q ss_pred             CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 007805            3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (589)
                      |+++.+++ +++|++|+|| ||+ .|++|.+|+++|.+++++++.|+ +|+|||||.|++||+|+|++++.......   
T Consensus         4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            57799999 7899999999 685 79999999999999999999887 49999999999999999999875421111   


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                      ....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        82 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  160 (261)
T 2gtr_A           82 ESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA  160 (261)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHH
Confidence            0111222234555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       161 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  212 (261)
T 2gtr_A          161 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLE----------------------------  212 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++.+|++||+|++
T Consensus       213 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f  261 (261)
T 2gtr_A          213 --------ESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF  261 (261)
T ss_dssp             --------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence                    4567777777677899999999999999999999999999999999863

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=7e-51  Score=407.45  Aligned_cols=252  Identities=22%  Similarity=0.323  Sum_probs=219.3

Q ss_pred             CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 007805            1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (589)
Q Consensus         1 M~~~~~~~~----~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~   75 (589)
                      |+ +.+.++    . +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus         5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   82 (267)
T 3oc7_A            5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS   82 (267)
T ss_dssp             CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred             cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence            54 578888    6 7899999999996 699999999999999999999999999999999999999999998862111


Q ss_pred             CCcc----cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHh
Q 007805           76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP  151 (589)
Q Consensus        76 ~~~~----~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~  151 (589)
                      ....    ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            1110    01233344566 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHH
Q 007805          152 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR  231 (589)
Q Consensus       152 ~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (589)
                       ++|..+|+++++||++++|+||+++||||+|  ++++++++.++|++|++.||.+++                      
T Consensus       162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~----------------------  216 (267)
T 3oc7_A          162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLA----------------------  216 (267)
T ss_dssp             -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred             -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHH----------------------
Confidence             9999999999999999999999999999999  788999999999999999986554                      


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          232 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                    .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       217 --------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  265 (267)
T 3oc7_A          217 --------------ASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW  265 (267)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred             --------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                          4567777777778999999999999999999999999999999998875

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=4e-51  Score=405.45  Aligned_cols=247  Identities=24%  Similarity=0.312  Sum_probs=201.1

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccccc
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      +.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence            67788 7899999999995 79999999999999999999999999999999 999999999999886432111001122


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~  163 (589)
                      ...++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++++
T Consensus        81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~  158 (250)
T 2a7k_A           81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII  158 (250)
T ss_dssp             HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence            2234556 67999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (589)
                      +||++++|+||+++||||+|||++++.+++.+++++|++.||.+++                                  
T Consensus       159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  204 (250)
T 2a7k_A          159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI----------------------------------  204 (250)
T ss_dssp             HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH----------------------------------
T ss_pred             HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999886543                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                        .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       205 --~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          205 --NTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             --HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence              4566777777677899999999999999999999999999999974

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.3e-51  Score=410.46  Aligned_cols=247  Identities=25%  Similarity=0.321  Sum_probs=193.2

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      +++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++........ .
T Consensus        10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~   87 (258)
T 3lao_A           10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASG-F   87 (258)
T ss_dssp             SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTB-C
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhh-H
Confidence            357799999 8999999999996 699999999999999999999999999999999999999999999876433221 1


Q ss_pred             ccchhHHHHHHHHH-HhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~~~~~~~~~~l-~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .+.....+.+ .++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        88 ~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  166 (258)
T 3lao_A           88 RYPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDA  166 (258)
T ss_dssp             CCCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            1222222334 557 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      +++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       167 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  216 (258)
T 3lao_A          167 MRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVR------------------------------  216 (258)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~  287 (589)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       217 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          217 ------AALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             ------HHHHHHHHHTC-------------------------------
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence                  557888888888999999999999999999999999999995

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=6.7e-51  Score=404.58  Aligned_cols=248  Identities=25%  Similarity=0.358  Sum_probs=221.1

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc--CCCccccc
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH--GAGDVSLM   82 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~--~~~~~~~~   82 (589)
                      +.++  +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....  ........
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence            4555  5789999999996 79999999999999999999999999999999999999999999886531  11000000


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|+++
T Consensus        80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l  157 (253)
T 1uiy_A           80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDL  157 (253)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHH
Confidence            01134555 678999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++                                 
T Consensus       158 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  204 (253)
T 1uiy_A          158 LLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR---------------------------------  204 (253)
T ss_dssp             HHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred             HHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999876543                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~  293 (589)
                         .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       205 ---~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          205 ---LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             ---HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence               457788888888999999999999999999999999999999998875

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.1e-50  Score=409.06  Aligned_cols=247  Identities=21%  Similarity=0.287  Sum_probs=222.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCC-CcCCCCchhhhhccCCCcc--
Q 007805            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDV--   79 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~-F~aG~Dl~~~~~~~~~~~~--   79 (589)
                      |+.+.+++ +++|++|+||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|+. ||+|+|++++.........  
T Consensus         7 ~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~   85 (289)
T 3h0u_A            7 YETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAG   85 (289)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhH
Confidence            68899999 7999999999999999999999999999999999999999999999975 5667799988653211100  


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+
T Consensus        86 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~  164 (289)
T 3h0u_A           86 GPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGR  164 (289)
T ss_dssp             STTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHH
Confidence            12233445666 7799999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       165 A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~-----------------------------  215 (289)
T 3h0u_A          165 ALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALI-----------------------------  215 (289)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986544                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHH
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA  288 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~  288 (589)
                             .+|++++.... +++++++.|.+.+..++.|+|++|++++|++
T Consensus       216 -------~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          216 -------AAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             -------HHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                   45778888777 8999999999999999999999999999999

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=6.2e-51  Score=406.03  Aligned_cols=253  Identities=33%  Similarity=0.432  Sum_probs=224.5

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         2 ~~~~~~~~~~--~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      +|+.+.++..  .++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchH-
Confidence            4677777762  5689999999996 79999999999999999999999999999999999999999999875321100 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        .........+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        81 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  157 (260)
T 1mj3_A           81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence              0000011123 4578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++|++||++++|+||+++||||+|||++++++++.+++++|++.||.+++                             
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  208 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA-----------------------------  208 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                             .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       209 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  257 (260)
T 1mj3_A          209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                   5578888888889999999999999999999999999999999998775

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=3.3e-51  Score=419.08  Aligned_cols=255  Identities=24%  Similarity=0.260  Sum_probs=188.6

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------CCcCCCCchhhhhc
Q 007805            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV   73 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-------~F~aG~Dl~~~~~~   73 (589)
                      |+.|.++++ +++|++|+||||+ +|+||.+|+++|.++++.++.|+++|+|||||.|+       +||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            667999983 4899999999996 69999999999999999999999999999999996       89999999986432


Q ss_pred             cC----C------CcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCCC
Q 007805           74 HG----A------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP  142 (589)
Q Consensus        74 ~~----~------~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~p  142 (589)
                      ..    .      ............++ ++|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            11    0      00011111233555 67999999999999999999999999999999999 9999999999999999


Q ss_pred             ChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHH
Q 007805          143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE  222 (589)
Q Consensus       143 ~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (589)
                      ++|++++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.||.+++             
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~-------------  279 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR-------------  279 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999987654             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                             .+|++++.... .+...+..|.+.+..++.|+|++|++.+|++||+|++.
T Consensus       280 -----------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~  328 (334)
T 3t8b_A          280 -----------------------MLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWS  328 (334)
T ss_dssp             -----------------------HHHHHHHHTCC-CC------------------------------------
T ss_pred             -----------------------HHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                                   44667776643 45556677888899999999999999999999998864

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=3.3e-51  Score=405.90  Aligned_cols=244  Identities=25%  Similarity=0.379  Sum_probs=201.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.++. +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....      .
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~------~   80 (256)
T 3pe8_A            8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT------E   80 (256)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH------H
Confidence            46789999 8999999999996 69999999999999999999999999999999999999999999875421      1


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                          ..... ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        81 ----~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  155 (256)
T 3pe8_A           81 ----LPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR  155 (256)
T ss_dssp             --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             ----HHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence                11222 4578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  203 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVR--------------------------------  203 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999986554                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HhCCHHHHhHHHHHHHhhhccC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKE---LVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~---~~~s~~~~~~i~af~~~r~~~~  294 (589)
                          .+|++++.....+++++++.|.+.+..   .+.++|++|++.+|++|+++.+
T Consensus       204 ----~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~  255 (256)
T 3pe8_A          204 ----ALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV  255 (256)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence                456788888888899999999999665   4777888999999999999875

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.3e-50  Score=404.13  Aligned_cols=251  Identities=24%  Similarity=0.327  Sum_probs=207.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--C-C
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--A-G   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~   77 (589)
                      |+++.+.++..+++|++|+||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....  . .
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            3 LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             -----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCS
T ss_pred             CCccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            346777777767899999999996699999999999999999999999999999999999999999998765310  1 1


Q ss_pred             --cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                        ....+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG  160 (263)
T 3l3s_A           83 RAFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIG  160 (263)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcC
Confidence              0112223344555 67999999999999999999999999999999999999999999999999 5788999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (589)
                      ..+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                          
T Consensus       161 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  214 (263)
T 3l3s_A          161 RRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR--------------------------  214 (263)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999986544                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (589)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~  289 (589)
                                .+|++++.....+++++++.|.+.+..++.|+|++|++++|.+.
T Consensus       215 ----------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          215 ----------RGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred             ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence                      55788888888999999999999999999999999999999764

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.3e-50  Score=400.72  Aligned_cols=242  Identities=26%  Similarity=0.354  Sum_probs=211.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      ++.+.+++ +++|++|+||||+ .|+||.+|+.+|.++++++++| ++|+|||||.|++||+|+|++...      ....
T Consensus        20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~   91 (264)
T 3he2_A           20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD   91 (264)
T ss_dssp             --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence            45788999 8999999999996 7999999999999999999988 999999999999999999998311      1112


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      +.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (264)
T 3he2_A           92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA  170 (264)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence            233344566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      |++||++++|+||+++||||+|++    .+++.++|++|++.||.+++                                
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~--------------------------------  214 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQ--------------------------------  214 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999997    36789999999999986554                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                          .+|++++..  .+++++++.|.+.+..++.|+|++|++.+|++||+|++.
T Consensus       215 ----~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  262 (264)
T 3he2_A          215 ----HAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ  262 (264)
T ss_dssp             ----HHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                446677765  346677888999999999999999999999999998853

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=3.4e-50  Score=402.63  Aligned_cols=243  Identities=28%  Similarity=0.448  Sum_probs=216.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+ +.|.+++ +++|++|+||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus        22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~   98 (277)
T 4di1_A           22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD   98 (277)
T ss_dssp             -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence            54 6799999 8999999999996699999999999999999999999999999999999999999999865321 1112


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            2233344566 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      ++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                               
T Consensus       178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  226 (277)
T 4di1_A          178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALA-------------------------------  226 (277)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999986543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~  293 (589)
                           .+|++++.....+++++++.|...+..++.|+          +||+|+
T Consensus       227 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~  264 (277)
T 4di1_A          227 -----AAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG  264 (277)
T ss_dssp             -----HHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence                 56788999999999999999999999999998          888887

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=7.3e-50  Score=400.67  Aligned_cols=253  Identities=26%  Similarity=0.419  Sum_probs=220.4

Q ss_pred             CcEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805            4 PRVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         4 ~~~~~~~---~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      ..+.++.   .+++|++|+||||+ .|++|.+|+++|.++++.+++|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   86 (272)
T 1hzd_A            8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SE   86 (272)
T ss_dssp             CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HH
T ss_pred             CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HH
Confidence            3455553   25789999999996 7999999999999999999999999999999998 69999999998754211 11


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        87 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  165 (272)
T 1hzd_A           87 VGPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL  165 (272)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHH
Confidence            111222334555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHH----HHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l----~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (589)
                      |++|++||++++|+||+++||||+|||++++    .+.+.+++++|+..||.+++                         
T Consensus       166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~-------------------------  220 (272)
T 1hzd_A          166 AKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR-------------------------  220 (272)
T ss_dssp             HHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHH-------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            9999999999999999999999999998874    45778888888887775433                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                 .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       221 -----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  269 (272)
T 1hzd_A          221 -----------VAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  269 (272)
T ss_dssp             -----------HHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                       4577888888889999999999999999999999999999999999875

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=5.3e-49  Score=409.28  Aligned_cols=290  Identities=23%  Similarity=0.320  Sum_probs=226.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc--
Q 007805            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD--   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~--   78 (589)
                      .+.+.+++ +++|++|+||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........  
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~   83 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI   83 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence            45688998 7899999999996 7999999999999999999999999999999998 89999999998864321111  


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ...+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus        84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~  161 (363)
T 3bpt_A           84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L  161 (363)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence            111112223445 67899999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccC------------CC---------
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD------------KL---------  217 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~------------~~---------  217 (589)
                      |++|++||++++|+||+++||||+|||++++.+.+.++++ +...++..+..+++.-            .+         
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~  240 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS  240 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence            9999999999999999999999999999998776554432 2222222221111100            00         


Q ss_pred             ----CChHHHHHHH-----HHHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 007805          218 ----GSLSEAREVL-----KLARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (589)
Q Consensus       218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~  287 (589)
                          +......+.+     ..+...+++-..+.| +...+|++++.+...+++++++.|...+..++.|+|++|++++|+
T Consensus       241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl  320 (363)
T 3bpt_A          241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL  320 (363)
T ss_dssp             HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence                0001101111     011122333333344 677899999999999999999999999999999999999999999


Q ss_pred             -Hh-hhccCCC
Q 007805          288 -AQ-RATSKVP  296 (589)
Q Consensus       288 -~~-r~~~~~~  296 (589)
                       +| |+|++.+
T Consensus       321 ~eK~r~P~~~~  331 (363)
T 3bpt_A          321 IDKDQSPKWKP  331 (363)
T ss_dssp             TSCCCCCCCSS
T ss_pred             eCCCCCCCCCC
Confidence             78 8877644

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=2.7e-49  Score=392.62  Aligned_cols=243  Identities=19%  Similarity=0.294  Sum_probs=205.3

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      ..+.+++ +++|++|+||||+ .|++|.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... ....
T Consensus         7 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   83 (254)
T 3isa_A            7 LPLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLR   83 (254)
T ss_dssp             CSEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHH
Confidence            3488999 8999999999996 899999999999999999987 5899999999999999999999876432111 1111


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|..+|+++
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l  159 (254)
T 3isa_A           84 MVRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSI  159 (254)
T ss_dssp             HHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHH
Confidence            11234555 679999999999999999999999999999999999999999999999998   47999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++++++++.|+.+++                                 
T Consensus       160 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  206 (254)
T 3isa_A          160 LGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA---------------------------------  206 (254)
T ss_dssp             HTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred             HHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986544                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                         .+|+++.       .+.++.|.+.+..++.|+|++|++.+|++||+|.+.+
T Consensus       207 ---~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~  250 (254)
T 3isa_A          207 ---TLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHH  250 (254)
T ss_dssp             ---HHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC-------
T ss_pred             ---HHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence               2344442       1234568889999999999999999999999999865

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=4.1e-49  Score=388.73  Aligned_cols=238  Identities=23%  Similarity=0.296  Sum_probs=213.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      ..++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... . ..  
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~--   79 (243)
T 2q35_A            5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV--   79 (243)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC--
T ss_pred             EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH--
Confidence            34566 7899999999995 79999999999999999999999999999999999999999999876432111 1 11  


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                        ++++ .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++
T Consensus        80 --~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  156 (243)
T 2q35_A           80 --LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY  156 (243)
T ss_dssp             --CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred             --HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence              2344 5688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|+||+++||||+|||++++.+++.++++++++.||.+++                                   
T Consensus       157 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  201 (243)
T 2q35_A          157 TGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLV-----------------------------------  201 (243)
T ss_dssp             HCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHH-----------------------------------
T ss_pred             cCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999886544                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~  287 (589)
                       .+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       202 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          202 -ALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             -HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence             446677777666788999999999999999999999999874

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.2e-48  Score=393.84  Aligned_cols=245  Identities=18%  Similarity=0.187  Sum_probs=205.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (589)
                      |+|+.+.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN   84 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence            6677899999 7899999999995 799999999999999999999999999999999999999999998754211110 


Q ss_pred             --cc---ccc----hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCCCChhhhh
Q 007805           79 --VS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQ  148 (589)
Q Consensus        79 --~~---~~~----~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~p~~g~~~  148 (589)
                        ..   .+.    ...+.++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              00   011    1113455 67899999999999999999999999999999999 9999999999999999999999


Q ss_pred             hHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCch-----HHHHHHH-HHHHHHHhcChhhhhhhhccCCCCChHH
Q 007805          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE  222 (589)
Q Consensus       149 ~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~-----~l~~~a~-~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (589)
                      +|++++|..+|++|++||++++|+||+++||||+|||++     ++.+++. ++|++|++.||.+++             
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~-------------  230 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCL-------------  230 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence            999999999999999999999999999999999999885     7888885 999999999986554             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                             .+|++++....    ..++        ...++|+++++.+|++||++..+
T Consensus       231 -----------------------~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e~~  268 (280)
T 1pjh_A          231 -----------------------GMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLKRF  268 (280)
T ss_dssp             -----------------------HHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             -----------------------HHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHHHH
Confidence                                   34566655432    2222        12478999999999999988433

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=3.1e-49  Score=415.04  Aligned_cols=286  Identities=17%  Similarity=0.232  Sum_probs=224.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-----
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-----   76 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~-----   76 (589)
                      +.+.+++ +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus        42 ~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           42 QTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             ceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            4566666 7899999999996 7999999999999999999999999999999999 799999999988643110     


Q ss_pred             -CcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        77 -~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                       .....+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus       121 ~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             HHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence             10111222233455 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHH---H----------------HHHHHHHHHhcC-----h------
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARR-----K------  205 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~---~----------------a~~~a~~la~~~-----~------  205 (589)
                       .+|++|++||++++|+||+++||||+|||++++.+   +                +.++++++....     +      
T Consensus       200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          200 -KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             -HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence             99999999999999999999999999999999877   3                333333332111     0      


Q ss_pred             -hhhhhhhccCCCCChHHHHHHHH-------HHHHHHHH-hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Q 007805          206 -PWIRSLHRTDKLGSLSEAREVLK-------LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML  276 (589)
Q Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s  276 (589)
                       ..+....   . .++....+.++       .++...++ ....-.+...+|++++++...+++++++.|...+..++.+
T Consensus       279 ~~~I~~~f---~-~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s  354 (407)
T 3ju1_A          279 QEMIDRLM---A-GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK  354 (407)
T ss_dssp             HHHHHHHT---C-SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---c-CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC
Confidence             0011010   0 11111111110       11111111 2234447788999999999999999999999999999999


Q ss_pred             HHHHhHHHHHH-Hh-hhccCCC
Q 007805          277 DTSRGLVHVFF-AQ-RATSKVP  296 (589)
Q Consensus       277 ~~~~~~i~af~-~~-r~~~~~~  296 (589)
                      +|++|++++|+ +| |+|++.+
T Consensus       355 ~D~~EGvrAflidKdr~P~w~~  376 (407)
T 3ju1_A          355 GDFCEGVRALLIDKDKQPKWQF  376 (407)
T ss_dssp             SSHHHHHHHHTTSCCCCCCCSS
T ss_pred             HHHHHHHHHHHhcCCcCCCCCC
Confidence            99999999998 88 8888765

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=5.7e-48  Score=378.12  Aligned_cols=229  Identities=23%  Similarity=0.256  Sum_probs=201.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+ +.+.+++ +++|++|+||||+.|++|.+|+++|.++++++++| ++|+|||||.|++||+|+|++++..... ....
T Consensus         3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~   78 (233)
T 3r6h_A            3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEA-KPAI   78 (233)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---C-HHHH
T ss_pred             CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccCh-HHHH
Confidence            55 5789999 89999999999989999999999999999999987 6899999999999999999999865321 1112


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+....++++ .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~  157 (233)
T 3r6h_A           79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ  157 (233)
T ss_dssp             HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            2233344566 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      ++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                               
T Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  206 (233)
T 3r6h_A          158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHN-------------------------------  206 (233)
T ss_dssp             HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987554                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVF  270 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~  270 (589)
                           .+|++++.....+++++++.|...|
T Consensus       207 -----~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          207 -----ATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             -----HHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             -----HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                 4567777777778888888888776

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=8.2e-48  Score=382.75  Aligned_cols=238  Identities=16%  Similarity=0.214  Sum_probs=204.9

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~-~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      |+.+.+++ ++ +|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  100 (263)
T 2j5g_A           22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD  100 (263)
T ss_dssp             CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred             CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence            56789999 67 99999999996 79999999999999999999999999999999999999999999875421111111


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEec-cccccCCCCChhhhhhHhhhcCHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~-pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      .+......++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|
T Consensus       101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A  178 (263)
T 2j5g_A          101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG  178 (263)
T ss_dssp             HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            1122233555 6789999999999999999 5999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                              
T Consensus       179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  228 (263)
T 2j5g_A          179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLR------------------------------  228 (263)
T ss_dssp             HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhh
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r  290 (589)
                            .+|++++.....+++++++.|           ...|++++|++||
T Consensus       229 ------~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~  262 (263)
T 2j5g_A          229 ------YTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN  262 (263)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred             ------HHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence                  446667666555555555544           4569999999987

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.5e-47  Score=374.91  Aligned_cols=225  Identities=20%  Similarity=0.283  Sum_probs=200.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      +.+.++. +++|++||||||+.|++|.+|+++|.+++++++.|  +|+|||||.|++||+|+|++++....  .....+.
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~--~~~~~~~   80 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSA--EAAINLV   80 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCH--HHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhCh--HHHHHHH
Confidence            4688998 89999999999989999999999999999999976  48999999999999999999986521  1112233


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (589)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l  162 (589)
                      ...+.++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..+|+++
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l  159 (232)
T 3ot6_A           81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS  159 (232)
T ss_dssp             HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence            3344566 7799999999999999999999999999999999998 8999999999999888999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (589)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                 
T Consensus       160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  206 (232)
T 3ot6_A          160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK---------------------------------  206 (232)
T ss_dssp             HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred             HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999986554                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007805          243 QHQACLDVIEEGIVHGGYSGVLKEAKVF  270 (589)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~  270 (589)
                         .+|++++.....+++++++.|.+.|
T Consensus       207 ---~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          207 ---KTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHhHhHHHHHHHHHHHhc
Confidence               4577888888788899999888754

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=3.5e-46  Score=379.33  Aligned_cols=254  Identities=19%  Similarity=0.190  Sum_probs=215.5

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCCCcCCCCchhhh
Q 007805            3 APRVTMEVG-NDGVAIITLINPP-----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ   71 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~-----~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~g~~F~aG~Dl~~~~   71 (589)
                      |+++.+..+ +++|++|+||||+     +|++|.+|+.+|.++++.++.     |+++|+|||||.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            556666543 7889999999994     459999999999999999987     58999999999999999999999986


Q ss_pred             hccCCCccc---ccchhHHHHHHHHH---HhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChh
Q 007805           72 KVHGAGDVS---LMPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (589)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~~~~~l---~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g  145 (589)
                      .........   .+.......+ ..+   .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            532111111   1111122222 223   468999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHH
Q 007805          146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE  225 (589)
Q Consensus       146 ~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~  225 (589)
                      ++++|++++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++ +|.+++                
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~~----------------  250 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAWA----------------  250 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHHH----------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHHH----------------
Confidence            999999999999999999999999999999999999999999999999999999986 554332                


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          226 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       226 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                                          .+|++++.....+++++++.|.+.+..++.|+|....+..++-+++-++
T Consensus       251 --------------------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~  299 (305)
T 3m6n_A          251 --------------------AMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRR  299 (305)
T ss_dssp             --------------------HHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred             --------------------HHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhc
Confidence                                5678899999999999999999999999999999888777776666554

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=6.9e-46  Score=381.76  Aligned_cols=204  Identities=25%  Similarity=0.338  Sum_probs=174.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|++|.+++ +++|++|+||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~  110 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG  110 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence            4578899999 8999999999996 7999999999999999999999999999999999999999999988653211100


Q ss_pred             ---------------------c--------ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCce
Q 007805           80 ---------------------S--------LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ  130 (589)
Q Consensus        80 ---------------------~--------~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~  130 (589)
                                           .        .+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence                                 0        0111223344 568899999999999999999999999999999999999


Q ss_pred             EeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       131 ~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      |++||+++|++|++|   +|++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus       190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~  265 (333)
T 3njd_A          190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI  265 (333)
T ss_dssp             EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999876   5899999999999999999999999999999999999999999999999999999987654

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=6.9e-46  Score=368.24  Aligned_cols=237  Identities=18%  Similarity=0.235  Sum_probs=200.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (589)
                      +.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus        16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~   93 (257)
T 1szo_A           16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI   93 (257)
T ss_dssp             TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence            5689999 7899999999995 7999999999999999999999999999999999999999999987521 11111111


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEec-cccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (589)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~-pe~~~Gl~p~~g~~~~l~~~~G~~~a~~  161 (589)
                      .....+++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|++
T Consensus        94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~  171 (257)
T 1szo_A           94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  171 (257)
T ss_dssp             HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence            12234555 6789999999999999999 5999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (589)
                      +++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                                
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  219 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR--------------------------------  219 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999986554                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (589)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~  291 (589)
                          .+|++++.....+++++++.|..           .+++.+|-.+-+
T Consensus       220 ----~~K~~l~~~~~~~l~~~l~~~~~-----------~eg~~a~~~~~~  254 (257)
T 1szo_A          220 ----YARKVLTRQLRRVMEADLSLGLA-----------HEALAAIDLGME  254 (257)
T ss_dssp             ----HHHHHHSHHHHHHHHHHHHHHHH-----------HHHHHHHHHC--
T ss_pred             ----HHHHHHHhhhhccHHHHHHHHHH-----------Hhhhhhhhcccc
Confidence                34566666655556666665543           367888876543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=9e-46  Score=387.91  Aligned_cols=246  Identities=23%  Similarity=0.215  Sum_probs=201.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--------C-CCCcCCCCchhhhhc
Q 007805            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV   73 (589)
Q Consensus         4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--------g-~~F~aG~Dl~~~~~~   73 (589)
                      +.+.++. +++|++|+||||+ .|+||.+|+++|.++++.++.|+++|+|||||.        | ++||+|+|++++...
T Consensus       167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4688888 7899999999995 799999999999999999999999999999994        6 799999999998643


Q ss_pred             cCCCccc---ccchhHHHHHHHHH------------HhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccccc
Q 007805           74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (589)
Q Consensus        74 ~~~~~~~---~~~~~~~~~~~~~l------------~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~  138 (589)
                      .......   ........++ ..+            .++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            2111000   0001122333 323            47999999999999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCC
Q 007805          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (589)
Q Consensus       139 Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (589)
                      |++|++| +++|++++|..+|++|++||++++|+||+++||||+|||++++.+++.+++++++.   .++          
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~Av----------  390 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DAV----------  390 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HHH----------
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HHH----------
Confidence            9999887 68999999999999999999999999999999999999999999999998887642   221          


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhc
Q 007805          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGG---YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (589)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~  292 (589)
                                                ..+|++++.... ++   .+.+..|...+..++.|+|++|++.+|++||++
T Consensus       391 --------------------------~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a  440 (440)
T 2np9_A          391 --------------------------LANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA  440 (440)
T ss_dssp             --------------------------HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred             --------------------------HHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence                                      244566666544 33   355667788899999999999999999999864

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.8e-45  Score=368.55  Aligned_cols=205  Identities=27%  Similarity=0.346  Sum_probs=174.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |+|+.+.+++ +++|++|+||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence            4578899999 8999999999996 7999999999999999999999999999999999999999999988653211110


Q ss_pred             -ccc---chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805           80 -SLM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (589)
Q Consensus        80 -~~~---~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G  155 (589)
                       ..+   ......++ .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+++++.+ ++++|
T Consensus        96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG  172 (279)
T 3t3w_A           96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELG  172 (279)
T ss_dssp             HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcC
Confidence             011   11223445 6789999999999999999999999999999999999999999999999 55555544 99999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      ..+|+++++||++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus       173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  226 (279)
T 3t3w_A          173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALR  226 (279)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999986554

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=6.4e-41  Score=353.10  Aligned_cols=275  Identities=20%  Similarity=0.252  Sum_probs=214.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCCCcCCCCchh
Q 007805            3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV   69 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p~-----------~N~l~~~~~~~l~~~l~~~~~~-~~v~~vvl~g-~g~~F~aG~Dl~~   69 (589)
                      |+++.++. +++|++|+||||+           .|++|.+|+.+|.+++++++.| +++|+||||| .|+.||+|+|+++
T Consensus        20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e   98 (556)
T 2w3p_A           20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM   98 (556)
T ss_dssp             CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred             CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence            45788998 7899999999995           6999999999999999999999 9999999999 8999999999999


Q ss_pred             hhhccCCCcccccchhHHHHHHHHH----HhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccc-cCCCC
Q 007805           70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP  142 (589)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~-~Gl~p  142 (589)
                      +...... ....+....+.++ ..+    .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|++|
T Consensus        99 l~~~~~~-~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P  176 (556)
T 2w3p_A           99 LGLSTHA-WKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP  176 (556)
T ss_dssp             HHHSCHH-HHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred             HhhcccH-HHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence            8653211 1111222334555 567    8999999999999999999999999999999999  999999999 99999


Q ss_pred             ChhhhhhHh--hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCCh
Q 007805          143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL  220 (589)
Q Consensus       143 ~~g~~~~l~--~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~  220 (589)
                      ++|++++|+  |++|..+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++. ++... .++
T Consensus       177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~~-K~l~~-~~l  254 (556)
T 2w3p_A          177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHA-QGVPL-TRI  254 (556)
T ss_dssp             TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTTC-CCCCC-CCC
T ss_pred             CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHhh-hhhhc-chh
Confidence            999999999  99999999999999999999999999999999999999999999999999999877653 22111 111


Q ss_pred             HH-----------HHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHH-HhHHHHHH
Q 007805          221 SE-----------AREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS-RGLVHVFF  287 (589)
Q Consensus       221 ~~-----------~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~-~~~i~af~  287 (589)
                      ..           ....+..+++. ..+.++..|+|.++++++.....            .+..+..++|. ...++.|+
T Consensus       255 ~r~~~~~gl~y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~------------~~~~l~~~~el~~All~l~~  322 (556)
T 2w3p_A          255 ERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGA------------NWWPLKFAREFDDAILSMRT  322 (556)
T ss_dssp             CCEEETTEEEETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGG------------GSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhh------------cchhhhhhhHHHHHHHhhhh
Confidence            00           00001111111 11445666777777777765443            22333333444 55777888


Q ss_pred             HhhhccC
Q 007805          288 AQRATSK  294 (589)
Q Consensus       288 ~~r~~~~  294 (589)
                      +.+....
T Consensus       323 ne~~~~~  329 (556)
T 2w3p_A          323 NELAVGT  329 (556)
T ss_dssp             HCSSCCE
T ss_pred             ccHHHhH
Confidence            7766543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.91  E-value=3.8e-24  Score=230.10  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=136.9

Q ss_pred             ecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHH
Q 007805          421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (589)
Q Consensus       421 s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~  500 (589)
                      ..+++.+.++.  ...+|.++++.|+++    .+++|+++++.|++++++.+.++++.+|+.|++++|.||||+||++.+
T Consensus       323 ~~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~  396 (483)
T 3mog_A          323 IETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAM  396 (483)
T ss_dssp             EECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHH
T ss_pred             cccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHH
Confidence            35667776666  345678999999988    689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCC-CCCchHHHHHHHHcCCCCc
Q 007805          501 YSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGN  575 (589)
Q Consensus       501 ~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~  575 (589)
                      ++|||++|+++|+ +++|||.++ .|+|||+|||+|+|.+|+|+++++++.|++.+++ ++.|+++|++|+++|++|.
T Consensus       397 ~~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~  474 (483)
T 3mog_A          397 IINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYE  474 (483)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCC
Confidence            9999999999999 999999999 9999999999999999999999999999999987 5569999999999997766

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.87  E-value=2.7e-23  Score=178.20  Aligned_cols=98  Identities=20%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             HcCCeeE-EEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhC
Q 007805          478 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (589)
Q Consensus       478 ~lG~~~v-~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  554 (589)
                      .++|.+| +++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++++++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999 88999999999999999999999999997 999999999 89999999999999999999999999999998


Q ss_pred             CC-CCCchHHHHHHHHcCCCCc
Q 007805          555 PD-RSFQSPLVDLLLKSGRNGN  575 (589)
Q Consensus       555 ~~-~~~~~~~l~~~v~~g~~G~  575 (589)
                      ++ ++.|+++|++|+++|++|+
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~  104 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKA  104 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHH
T ss_pred             CCCcCCCCHHHHHHHHcCCCCc
Confidence            88 5669999999999999998

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.83  E-value=3.2e-21  Score=212.59  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=143.4

Q ss_pred             cCcEEEEEeCCCC-CCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 007805           12 NDGVAIITLINPP-VNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (589)
Q Consensus        12 ~~~v~~i~l~~p~-~N~--l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (589)
                      +++|++|++|+|. .|+  ++..+.++|.++|+.++.|+++|+|||++.+    .|+|+....             ...+
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~  362 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA  362 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence            5789999999994 677  6889999999999999999999999999875    477776421             1224


Q ss_pred             HHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccc------------ccCCCCCh------------
Q 007805           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGF------------  144 (589)
Q Consensus        89 ~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~------------~~Gl~p~~------------  144 (589)
                      .+ +++..++|||||+|+|.|.|||+.|+++||+++|++++.|+.+++            ++|+.|+.            
T Consensus       363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            45 568889999999999999999999999999999999999999985            68987642            


Q ss_pred             -hhh---------------hhHhhhcCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHH
Q 007805          145 -GGT---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL  198 (589)
Q Consensus       145 -g~~---------------~~l~~~~G~~~-----a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~  198 (589)
                       +.+               .++++.++..+     +.+++++|+.++|+||+++||||++++.+++.+++.+++.
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence             223               56788888888     9999999999999999999999999998888877776543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.82  E-value=7.4e-21  Score=194.88  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=161.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||.+||..|+.+|+ +|++||+++++++.....+.....            ......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999999 999999999887753222211100            0001235666677888999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCcEE--EecCCCCCHHHHhcccCC-CCcEEEecCCCCC
Q 007805          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA  450 (589)
Q Consensus       388 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~~-~~r~ig~h~~~p~  450 (589)
                      ||+||+|+              +++..+++++++++.++++ ++++  +||++.+....+...... ++|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888999999999999975 7777  577666666666666555 6788874      


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccccc---ccHHHHHHH-------HHHHHcCC-CHHHHH
Q 007805          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID  519 (589)
Q Consensus       451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nR---i~~~~~~Ea-------~~l~~~Gv-~~~~iD  519 (589)
                                  .|+.++......+.+.+|+.   .++.+||++||   .++++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        36788888888899999987   48999999999   899999998       89999996 999999


Q ss_pred             HHHHhcCCCCcHHHHHHHhch-HHHHHHHHHH
Q 007805          520 SAIRSFGLPIGPFQLLDLAGY-GVAAATSKEF  550 (589)
Q Consensus       520 ~~~~~~g~p~Gpf~~~D~~Gl-d~~~~~~~~l  550 (589)
                      .++...  ++||++++|..|. ++.+.+....
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a~a~  240 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFAPAAAA  240 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHHHHHHH
Confidence            998422  7899999999887 6555544333

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.81  E-value=2.7e-19  Score=175.18  Aligned_cols=167  Identities=19%  Similarity=0.184  Sum_probs=130.2

Q ss_pred             cCcEEEEEeCCC-CCCC-----CC--HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 007805           12 NDGVAIITLINP-PVNA-----LA--IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (589)
Q Consensus        12 ~~~v~~i~l~~p-~~N~-----l~--~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (589)
                      +++|++|.++.+ ..+.     ++  .-.+++|.++|+.+++|+++|+|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            468999999877 2221     11  0136899999999999999999999987    5788886532            


Q ss_pred             hhHHHHHHHHHHh-CCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecc---------------------ccccCCC
Q 007805           84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI  141 (589)
Q Consensus        84 ~~~~~~~~~~l~~-~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~p---------------------e~~~Gl~  141 (589)
                       ...+.+ +.+.. ++|||||+++|.|.|||++|+++||++++++++.|+.+                     +++.|..
T Consensus        66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence             122444 45666 89999999999999999999999999999999999999                     6677777


Q ss_pred             CChhhh--------------------------hhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHH
Q 007805          142 PGFGGT--------------------------QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (589)
Q Consensus       142 p~~g~~--------------------------~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~  195 (589)
                      ++.+..                          +.-.|.+....... +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~  222 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK  222 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            766522                          22345566555555 789999999999999999999998887776666


Q ss_pred             HH
Q 007805          196 WA  197 (589)
Q Consensus       196 ~a  197 (589)
                      ++
T Consensus       223 ~~  224 (240)
T 3rst_A          223 DH  224 (240)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.80  E-value=4.6e-19  Score=178.17  Aligned_cols=188  Identities=15%  Similarity=0.111  Sum_probs=146.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .+||+|||+|+||.+||..|+++|+   +|++||++++++++..++          .             .+..+++. +
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~-------------gi~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------C-------------GVHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------T-------------CCEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------c-------------CCEEeCChHH
Confidence            4689999999999999999999999   999999999987775321          0             23445554 7


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT  461 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~  461 (589)
                      .+++||+||+|||  ++.+.++++++.++ ++++++|+|++++++++.+...++.+.++++.||++|...+..++ ++++
T Consensus        60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            7899999999997  56788999999998 899989999999999999999888888999999999999888776 4578


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--------CCcccccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--------~Gfi~nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      +.++++.++.+.++++.+|+.+++..+.        .|.- . -+..++.|++  ..++.|+++++.-+++
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsg-p-a~~~~~~eal~~a~v~~Gl~~~~a~~l~  206 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSG-P-AYIFLIMEALQEAAEQLGLTKETAELLT  206 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSH-H-HHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccH-H-HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            8899999999999999999855442321        1100 1 1222334554  2346688777665554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.78  E-value=3.6e-19  Score=177.84  Aligned_cols=211  Identities=10%  Similarity=0.014  Sum_probs=156.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +||+|||+|.||..+|..|++.|++ |.+||+++++++...+.+                       .+..++++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence            5799999999999999999999998 999999998877643210                       13345566 6678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC-----CCCCeeeEecC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT  461 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~-----~~~~lveiv~~  461 (589)
                      ++|+||+|+|++  ...+++.++.+.++++++|++++++.+.+.+.+.+..+   -..|+++|.     ..++.+.++- 
T Consensus        68 ~~Dvvi~av~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDS--AFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHH--HHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHH--HHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE-
Confidence            999999999955  34788899998898999999999999887766555432   235666642     1223333332 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--CCc-----cccccc--HHHHHHHHHHHHcCCCHHHHHHHH-H--------
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-R--------  523 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~Gf-----i~nRi~--~~~~~Ea~~l~~~Gv~~~~iD~~~-~--------  523 (589)
                      ..++++.++.+.++++.+|++++++++.  +++     ++|++.  ...+.|++. .+.|++++++..++ .        
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999999999754  356     677775  344556643 46799888875444 2        


Q ss_pred             hc-CCCCcHHHHHHHhchHHHHHHHHH
Q 007805          524 SF-GLPIGPFQLLDLAGYGVAAATSKE  549 (589)
Q Consensus       524 ~~-g~p~Gpf~~~D~~Gld~~~~~~~~  549 (589)
                      +. +.++||+...|..|++..+..++.
T Consensus       221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          221 EPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence            21 357899999999999998776654

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.78  E-value=1.4e-18  Score=167.39  Aligned_cols=152  Identities=24%  Similarity=0.328  Sum_probs=127.5

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 007805           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (589)
Q Consensus        12 ~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (589)
                      .+.|++|++++    ++++.+.+.|.++|+.++++ ++|+|+|+..    |.|+|+...                ..++ 
T Consensus         7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~----------------~~i~-   60 (230)
T 3viv_A            7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM----------------MNIV-   60 (230)
T ss_dssp             CCEEEEEEEES----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred             CCeEEEEEEeC----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence            46799999984    79999999999999999864 6999999875    677776532                2455 


Q ss_pred             HHHHhCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhh---------------hhHhhh
Q 007805           92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRL  153 (589)
Q Consensus        92 ~~l~~~~kp~iaav---~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~  153 (589)
                      +.|..++||||++|   +|.|.|+|+.|+++||+++++++++|+.+++..+. |..|.+               ..+++.
T Consensus        61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~  139 (230)
T 3viv_A           61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE  139 (230)
T ss_dssp             HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            66889999999999   99999999999999999999999999999987533 545542               247778


Q ss_pred             cCH--HHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHH
Q 007805          154 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELL  190 (589)
Q Consensus       154 ~G~--~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~  190 (589)
                      .|+  ..+.+++.+++.++|+||+++||||+|+++ ++++
T Consensus       140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll  179 (230)
T 3viv_A          140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL  179 (230)
T ss_dssp             TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHH
T ss_pred             hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHH
Confidence            885  789999999999999999999999999975 3443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.76  E-value=8.9e-18  Score=171.38  Aligned_cols=166  Identities=14%  Similarity=0.151  Sum_probs=131.2

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      +.++||+|||+|.||++||..|+++|+  +|++||+++++++.+.           +.|.++           ..++++ 
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~   88 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIA   88 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHH
Confidence            346899999999999999999999999  9999999998877652           223211           234555 


Q ss_pred             c-CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC--------
Q 007805          383 S-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------  451 (589)
Q Consensus       383 ~-~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~--------  451 (589)
                      + .+++||+||+|||.+  ...++++++.++++++++|++.+|+..  ++.+.+.++.  +|++.||+.++.        
T Consensus        89 ~~~~~~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~--~~v~~hPm~G~e~sG~~~A~  164 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSL  164 (314)
T ss_dssp             GGGGGCCSEEEECSCGG--GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEECCCCCCCSGGGCC
T ss_pred             HHhhccCCEEEEeCCHH--HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC--CEEecCcccCCcccchhhhh
Confidence            5 689999999999954  467889999999999999988776543  4455554432  899999988653        


Q ss_pred             ----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccc
Q 007805          452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRA  497 (589)
Q Consensus       452 ----~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi  497 (589)
                          .+..+.+++++.++++.++.+.++++.+|++++++ .+....++..+
T Consensus       165 ~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~  215 (314)
T 3ggo_A          165 DNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVV  215 (314)
T ss_dssp             TTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence                35678899999999999999999999999999988 34555555554

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.75  E-value=2.2e-18  Score=170.18  Aligned_cols=189  Identities=16%  Similarity=0.174  Sum_probs=144.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      ++||+|||+|.||.+||..|+++|+    +|++||+++++++...+..                       .+..+++. 
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~   58 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNN   58 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChH
Confidence            3689999999999999999999998    9999999999877653211                       23344555 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEecC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRT  461 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv~~  461 (589)
                      +.++++|+||+|+|  +....++++++.++++++++|+|.+++++++.+...+....++++.||+.|..... .+.++++
T Consensus        59 e~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  136 (247)
T 3gt0_A           59 EVAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPN  136 (247)
T ss_dssp             HHHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeC
Confidence            66789999999997  55678889999999999999999999999998888877777899999999998777 6677888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Cccc-ccccHHHHHHHHH--HHHcCCCHHHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV-NRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----Gfi~-nRi~~~~~~Ea~~--l~~~Gv~~~~iD~~~  522 (589)
                      +.++++.++.++++++.+|+ ++++.+..     +... -..+...+.|++.  ..+.|+++++.-+++
T Consensus       137 ~~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~  204 (247)
T 3gt0_A          137 EMVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA  204 (247)
T ss_dssp             TTCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999999 55553211     0000 0012234456664  346699998887777

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.73  E-value=6.8e-18  Score=170.83  Aligned_cols=189  Identities=15%  Similarity=0.157  Sum_probs=134.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .|+||+|||+|.||.+||.+|+++||+|++||+++++.+..           .+.|             .+..+++ +.+
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~G-------------a~~a~s~~e~~   57 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----------VAAG-------------ASAARSARDAV   57 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTT-------------CEECSSHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HHcC-------------CEEcCCHHHHH
Confidence            47899999999999999999999999999999999988764           2223             3445566 678


Q ss_pred             CCCCEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCC--------CCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HVM  453 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~--------~~~  453 (589)
                      ++||+||.|+|++.+++..++..  +.+.++++.+|++.|+..+-+  ++++.+...    |.+|.+.|        ..+
T Consensus        58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~G  133 (300)
T 3obb_A           58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAAG  133 (300)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHHT
T ss_pred             hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHhC
Confidence            99999999999777665555432  677788888887655433322  344433321    45555444        233


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-Cc---cccccc-H---HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-GF---AVNRAF-F---PYSQSARLLVSL-GVDVFRIDSAI-R  523 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-Gf---i~nRi~-~---~~~~Ea~~l~~~-Gv~~~~iD~~~-~  523 (589)
                      .+..++.|   +++++++++++++.+|++++++++.. |.   ++|.++ .   ..+.|++.+.+. |++++.+-.++ .
T Consensus       134 ~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~  210 (300)
T 3obb_A          134 TLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRR  210 (300)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            45667777   79999999999999999999997632 22   234433 2   234599988876 89999988887 5


Q ss_pred             hcC
Q 007805          524 SFG  526 (589)
Q Consensus       524 ~~g  526 (589)
                      +.+
T Consensus       211 ~~~  213 (300)
T 3obb_A          211 SSG  213 (300)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.70  E-value=1.9e-17  Score=166.15  Aligned_cols=210  Identities=10%  Similarity=-0.035  Sum_probs=141.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +||+|||+|.||.+||..|+++ ++| .+||+++++++.+.+.                      .+.  .++++ +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------------------~g~--~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------------------YGG--KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------------------TCC--CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------------------cCC--ccCCHHHHHh
Confidence            5799999999999999999988 999 5999999887664221                      111  34455 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecC----CCCCCC-CCeeeEecC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF----FSPAHV-MPLLEIVRT  461 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~----~~p~~~-~~lveiv~~  461 (589)
                      ++|+||+|+|++.  ..+++.++.   +++++|++.+++.+.+.+...     .+.+.|+    .+++.. ....++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            9999999999765  567776654   677888876667777665433     4556774    332321 112222222


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C------CcccccccHHHHHHHHHHHH-cCCCH----------HHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T------GFAVNRAFFPYSQSARLLVS-LGVDV----------FRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~------Gfi~nRi~~~~~~Ea~~l~~-~Gv~~----------~~iD~~~  522 (589)
                      ...+++.++.++++++.+|++++.+++.  +      ++..| .+..++.|+..+++ .|++.          ..+|.++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~  206 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIK  206 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            2235667899999999999999988642  1      34444 66677889888887 59944          4677766


Q ss_pred             -Hh-cCCCCcHHHHHHHhchHHHHHHHHHHHHhC
Q 007805          523 -RS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (589)
Q Consensus       523 -~~-~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  554 (589)
                       .+ .+.++||++..|..+++..++.++.+++.+
T Consensus       207 ~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          207 KMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             hcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence             44 566789999999999999999999886554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.70  E-value=1.2e-16  Score=162.50  Aligned_cols=192  Identities=13%  Similarity=0.127  Sum_probs=136.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      .+||+|||+|.||.+||..|+++|++|++||+++++++...+           .|            ....++++ +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence            468999999999999999999999999999999998776422           22            12224455 6789


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC----CCCCeee
Q 007805          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPLLE  457 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~----~~~~lve  457 (589)
                      +||+||+|+|++..++..++  +++.+.++++++|++.++..+..  .+...+. ...+|+. ||....    ....++.
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  142 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV  142 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence            99999999997666554444  66788899999887655543322  3333332 2334555 543211    1224455


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      ++.+   ++++++.++++++.+|++++++++.+|      ++.|.+.   ...++|++.+.++ |++++++..++ .+.+
T Consensus       143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  219 (303)
T 3g0o_A          143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG  219 (303)
T ss_dssp             EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred             EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            6655   789999999999999999999987555      2334443   3457899988876 89999999998 5443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.70  E-value=2.4e-17  Score=168.31  Aligned_cols=193  Identities=11%  Similarity=0.086  Sum_probs=138.8

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ...|+||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +..++++ +
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~~   73 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------HG-------------ASVCESPAE   73 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHH
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeEcCCHHH
Confidence            345789999999999999999999999999999999998776421           12             3445555 6


Q ss_pred             CCCCCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC----CCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMP  454 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~----~~~~  454 (589)
                      .+++||+||+|+|++..++..++  .++.+.++++++|++.++..+..  .+...+. ...+|+. ||....    ....
T Consensus        74 ~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~  152 (310)
T 3doj_A           74 VIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQ  152 (310)
T ss_dssp             HHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTC
T ss_pred             HHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCC
Confidence            67899999999997666554443  66888889999887655443322  2333222 2334544 432211    1234


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-H
Q 007805          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-R  523 (589)
Q Consensus       455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~  523 (589)
                      ++.++.+   ++++++.++++++.+|++++++++ +|      ++.|.++   ...++|++.+.+. |++++++..++ .
T Consensus       153 l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~  228 (310)
T 3doj_A          153 LIILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDL  228 (310)
T ss_dssp             EEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             eEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            5556665   689999999999999999999976 55      5556654   3456899998876 89999999998 5


Q ss_pred             hcC
Q 007805          524 SFG  526 (589)
Q Consensus       524 ~~g  526 (589)
                      +.+
T Consensus       229 ~~~  231 (310)
T 3doj_A          229 GAM  231 (310)
T ss_dssp             STT
T ss_pred             ccc
Confidence            443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.70  E-value=3.4e-17  Score=166.00  Aligned_cols=185  Identities=19%  Similarity=0.166  Sum_probs=134.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      .+||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .             .+..++++ +.++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~   70 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA   70 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh
Confidence            358999999999999999999999999999999998776422           1             24556666 5567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeeEec
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVR  460 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv~  460 (589)
                       ||+||+|+|++..+ ++++.++.+.++++++|++.++..+..  .+...+. ...+|+....+.++   ....+..++.
T Consensus        71 -aDvvi~~vp~~~~~-~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 -ADLIHITVLDDAQV-REVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             -SSEEEECCSSHHHH-HHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             -CCEEEEECCChHHH-HHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence             99999999976554 455688999999999887665544332  3333332 22344443222221   2234556666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cccccccH---HHHHHHHHHHHc-CCCHHHH------HHHH
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAFF---PYSQSARLLVSL-GVDVFRI------DSAI  522 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~~---~~~~Ea~~l~~~-Gv~~~~i------D~~~  522 (589)
                      +   ++++++.++++++.+|++++++++ +|      ++.|.+..   ..++|++.+.++ |++++++      ..++
T Consensus       149 g---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i  222 (296)
T 3qha_A          149 A---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL  222 (296)
T ss_dssp             C---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence            6   789999999999999999999976 55      45565543   347899998876 8999999      8777

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.68  E-value=2.2e-17  Score=168.64  Aligned_cols=189  Identities=14%  Similarity=0.056  Sum_probs=129.0

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +.++||+|||+|.||.+||..|+++|+ +|++||++  +++.+.+.           +.             .+..++++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~-------------g~~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------EL-------------GVSCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HT-------------TCEECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HC-------------CCEEeCCH
Confidence            346799999999999999999999999 99999997  45554431           11             23445555


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-C--CCcEEEecCCCC--CCCCC
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-S--QDRIIGAHFFSP--AHVMP  454 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~--~~r~ig~h~~~p--~~~~~  454 (589)
                       +.+++||+||+|||++...  +++.++.+.++++++|++.+|..+..  .+...+. .  ..+|+....+.|  .....
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~  155 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR  155 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence             6688999999999977755  56789999999999988776654433  2222222 1  234444222221  12235


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----ccccccH----HHHHHHHHHHHc-CCCHHHHHHHHHh
Q 007805          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAIRS  524 (589)
Q Consensus       455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~~~  524 (589)
                      +..+++++.+     +.++++++.+|+.++++++.+|.     ++|.++.    ..++|++.+.+. |++++.++.+..+
T Consensus       156 l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~l~~~  230 (312)
T 3qsg_A          156 VPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDAS  230 (312)
T ss_dssp             SEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             EEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            6777777543     78999999999999999876663     2344433    667899988877 8988666543344


Q ss_pred             c
Q 007805          525 F  525 (589)
Q Consensus       525 ~  525 (589)
                      .
T Consensus       231 ~  231 (312)
T 3qsg_A          231 F  231 (312)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.68  E-value=3.6e-17  Score=165.51  Aligned_cols=191  Identities=12%  Similarity=0.069  Sum_probs=128.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||||||+|.||.+||.+|+++||+|++||+++++.+..           .+.|             ....+++ +.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLG-------------ATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTT-------------CEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcC-------------CeEeCCHHHHHhc
Confidence            589999999999999999999999999999999886653           2222             3445555 77899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeeEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT  461 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv~~  461 (589)
                      ||+||.|+|++..+...+..++.+.++++.++++.++..+-+  ++.+.+. +..+|+.......+   ....+..++.+
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG  141 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG  141 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc
Confidence            999999999877777666677888889998887655433322  3333332 22233332221111   12233445555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----cccccc----HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                         +++++++++++++.+|+.++++++.+|-     ++|.++    ...+.|++.+.+. |++++++-.++ .+.+
T Consensus       142 ---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~  214 (297)
T 4gbj_A          142 ---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLF  214 (297)
T ss_dssp             ---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTT
T ss_pred             ---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence               7899999999999999999999876662     234443    3345699988876 99999988887 4444

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.68  E-value=2.5e-17  Score=166.40  Aligned_cols=191  Identities=13%  Similarity=0.090  Sum_probs=134.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------L-------------GARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------H-------------TCEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHH
Confidence            468999999999999999999999999999999998776432           1             23455566 6678


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeeE
Q 007805          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (589)
                      +||+||+|+|++..++..++  .++.+.++++++|++.++..+..  .+...+. ...+|+..+.+.++   ....+..+
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~  136 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIIL  136 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEE
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEE
Confidence            99999999997666554444  66788888888887655543322  2333222 22344443222211   11233445


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      +.+   ++++++.++++++.+|++++++++ +|      ++.|.+.   ...++|++.+.+. |++++++..++ .+.+
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~  211 (287)
T 3pdu_A          137 AAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAM  211 (287)
T ss_dssp             EEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            544   789999999999999999999976 44      2335543   3456899988866 89999999998 5443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.67  E-value=9.9e-17  Score=161.93  Aligned_cols=189  Identities=13%  Similarity=0.073  Sum_probs=135.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence            58999999999999999999999999999999998776422           1             23455666 66789


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC----CCCCeeeE
Q 007805          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI  458 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~----~~~~lvei  458 (589)
                      ||+||+|+|++..++..++  .++.+.++++++|++.++..+..  .+...+. ...+|+. ||..+.    ....++.+
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~  136 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIIL  136 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEE
Confidence            9999999997666555544  77888999999887664433322  2333222 2334555 443222    12244556


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      +.+   ++++++.++++++.+|++++++++ +|      ++.|-+.   ...++|++.+.+. |++++++..++ .+.+
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~  211 (287)
T 3pef_A          137 AAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAM  211 (287)
T ss_dssp             EEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            655   789999999999999999999976 44      2334432   3367899988876 89999999998 5443

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.67  E-value=5.8e-17  Score=156.13  Aligned_cols=157  Identities=8%  Similarity=0.008  Sum_probs=125.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      .+||+|||+|+||++||..|.++|++|++||+.                                          +.+++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~   43 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRD   43 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhcc
Confidence            468999999999999999999999999999973                                          11467


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHH
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ  467 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e  467 (589)
                      ||  |+|||.+  ...+++.++.++++++++|++.+++.+.+.+........+|++.||.....    .-+..+   +++
T Consensus        44 aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~~----~~i~a~---d~~  112 (232)
T 3dfu_A           44 FE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQDR----WVASAL---DEL  112 (232)
T ss_dssp             CS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETTE----EEEEES---SHH
T ss_pred             CC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCCc----eeeeCC---CHH
Confidence            88  9999976  467888999999999999988766666554544445567899999874321    113333   788


Q ss_pred             HHHHHHHHHHHcCCeeEEE--cCCCCc----ccccccHHHHHHHHHHH---HcCC-CHHH
Q 007805          468 VILDLMTVGKIIKKVPVVV--GNCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFR  517 (589)
Q Consensus       468 ~~~~~~~l~~~lG~~~v~v--~d~~Gf----i~nRi~~~~~~Ea~~l~---~~Gv-~~~~  517 (589)
                      .++.++++++.+|++++.+  .+.++|    ..++.+.++.++|.+++   ++|+ +++|
T Consensus       113 a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d  172 (232)
T 3dfu_A          113 GETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD  172 (232)
T ss_dssp             HHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence            9999999999999999999  446666    45777888999999999   8898 8898

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.67  E-value=1.5e-16  Score=163.01  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=133.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------LG-------------ATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------CC-------------CEeeCCHHHHH
Confidence            4578999999999999999999999999999999998776421           12             3455666 668


Q ss_pred             CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeee
Q 007805          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (589)
                      ++||+||+|+|++..++. ++.  ++.+.++++++|++.+++.+..  .+...+. ...+|+....+.++   ..+++..
T Consensus        86 ~~aDvVi~~vp~~~~~~~-v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i  164 (320)
T 4dll_A           86 RDADIVVSMLENGAVVQD-VLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVI  164 (320)
T ss_dssp             TTCSEEEECCSSHHHHHH-HHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEE
T ss_pred             hcCCEEEEECCCHHHHHH-HHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeE
Confidence            999999999997665544 444  6777888888887665543332  2333322 22344443211111   1234555


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g  526 (589)
                      ++.+   ++++++.++++++.+ +.++++++ +|      ++.|-+.   ...++|++.+.+. |++++++..++ .+.+
T Consensus       165 ~~gg---~~~~~~~~~~ll~~~-~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  239 (320)
T 4dll_A          165 MAGG---KPADFERSLPLLKVF-GRATHVGP-HGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA  239 (320)
T ss_dssp             EEES---CHHHHHHHHHHHHHH-EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred             EeCC---CHHHHHHHHHHHHhc-CCEEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence            6665   789999999999999 89998876 44      3335443   3457899988876 89999999998 5543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.64  E-value=1.1e-15  Score=154.26  Aligned_cols=188  Identities=13%  Similarity=0.042  Sum_probs=135.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      |+||+|||+ |.||+++|..|+++|++|++||+++++++.+.+           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            579999999 999999999999999999999999988766421           12             12233336788


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC--------CCCe---
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL---  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~--------~~~l---  455 (589)
                      +||+||+|+|++  ...+++.++.+.++++++|++.+++.+.+.+.+ .....++++.||+.|..        ....   
T Consensus        67 ~aDvVi~av~~~--~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALPDN--IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSCHH--HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCCch--HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            999999999944  468889999999999999998777776666654 33345899999988765        2222   


Q ss_pred             -----eeEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCCcc----cccccHHHH---HHHHHH-HHc-CCCHHH
Q 007805          456 -----LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFA----VNRAFFPYS---QSARLL-VSL-GVDVFR  517 (589)
Q Consensus       456 -----veiv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d-~~Gfi----~nRi~~~~~---~Ea~~l-~~~-Gv~~~~  517 (589)
                           ..++....++++.++.+.++++.+|+   +++++++ ..+.+    .|-...+++   .|++.. ... |+++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~  223 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA  223 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                 23333334688999999999999999   8888853 22222    344444433   355533 333 998887


Q ss_pred             HHHHH
Q 007805          518 IDSAI  522 (589)
Q Consensus       518 iD~~~  522 (589)
                      +-.++
T Consensus       224 ~~~~~  228 (286)
T 3c24_A          224 ALDFM  228 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.63  E-value=1.1e-15  Score=156.68  Aligned_cols=189  Identities=13%  Similarity=0.068  Sum_probs=136.7

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      .++||+|||+|.||++||..|+++|    ++|++||++++  +++...           +.|             +..++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~   76 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP   76 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence            3458999999999999999999999    89999999986  555431           111             33444


Q ss_pred             Cc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCC---CCcEEEecCCCCCCCCCee
Q 007805          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLL  456 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~---~~r~ig~h~~~p~~~~~lv  456 (589)
                      +. +.+++||+||+|||  +....+++.++.+.++++++|++.+++++...+.+.+..   ..++++.||..|.......
T Consensus        77 ~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~  154 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA  154 (322)
T ss_dssp             CHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred             ChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence            44 66789999999998  566788899999999999999998888888777665542   3579999998888766655


Q ss_pred             eEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----Cc--ccccccHHHHHHHHH--HHHcCCCHHHHHHHH
Q 007805          457 EIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (589)
Q Consensus       457 eiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~----Gf--i~nRi~~~~~~Ea~~--l~~~Gv~~~~iD~~~  522 (589)
                      .++ .++.++++..+.+.++++.+|..+++..+.-    +.  ..+-+++ .+.|++.  ....|+++++.-.++
T Consensus       155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~  228 (322)
T 2izz_A          155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLG  228 (322)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            544 6777789999999999999998765433210    00  1122222 3345543  345699887765554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.62  E-value=9.7e-16  Score=157.25  Aligned_cols=160  Identities=14%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|+||++||..|.++|++|++||++++.++.+.+           .|             +..++++ +.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence            4678999999999999999999999999999999998776522           22             1223444 333


Q ss_pred             ----CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC--------
Q 007805          386 ----KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH--------  451 (589)
Q Consensus       386 ----~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~--------  451 (589)
                          ++||+||+|||  +....++++++.++ +++++|++.+|..  .++.+..... ..+|++.||...+.        
T Consensus        63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~  138 (341)
T 3ktd_A           63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM  138 (341)
T ss_dssp             HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred             HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence                35799999999  66778899999887 8888887665542  2344544443 46899999987653        


Q ss_pred             ----CCCeeeEecCCCCCHH--------HHHHHHHHHHHcCCeeEEEc-CCCCccc
Q 007805          452 ----VMPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (589)
Q Consensus       452 ----~~~lveiv~~~~t~~e--------~~~~~~~l~~~lG~~~v~v~-d~~Gfi~  494 (589)
                          .+..+.+++++.++++        .++.+.++++.+|++++++. +....++
T Consensus       139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~  194 (341)
T 3ktd_A          139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAA  194 (341)
T ss_dssp             SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred             hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence                1234668888888888        99999999999999999883 3333333

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.59  E-value=1.5e-15  Score=163.37  Aligned_cols=204  Identities=13%  Similarity=0.081  Sum_probs=142.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--HhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~  385 (589)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+....    ..+.| + .+....  ..+++.+++++ +++
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~----i~e~g-l-~~~l~~~~~~~~l~~ttd~~~a~   82 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVP----IHEPG-L-KEVIARNRSAGRLRFSTDIEAAV   82 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS----SCCTT-H-HHHHHHHHHTTCEEEECCHHHHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCC----cCCCC-H-HHHHHHhcccCCEEEECCHHHHh
Confidence            679999999999999999999999999999999988875331000    00000 0 000110  12457888888 578


Q ss_pred             CCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccC----CC---CcEEEecCC
Q 007805          386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQ---DRIIGAHFF  447 (589)
Q Consensus       386 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~----~~---~r~ig~h~~  447 (589)
                      ++||+||+|||+        |+....+++++|.++++++++|++ .|++++.   .+...+.    .+   ..+  .+.+
T Consensus        83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~~  159 (478)
T 2y0c_A           83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF--SVVS  159 (478)
T ss_dssp             HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEEE
T ss_pred             hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE--EEEE
Confidence            999999999998        457888999999999999998864 4566542   2222111    11   222  2456


Q ss_pred             CCCCCCCee---------eEecCCCCCH----HHHHHHHHHHHHcCC--eeEEEcC-----CCCccccccc---HHHHHH
Q 007805          448 SPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYSQS  504 (589)
Q Consensus       448 ~p~~~~~lv---------eiv~~~~t~~----e~~~~~~~l~~~lG~--~~v~v~d-----~~Gfi~nRi~---~~~~~E  504 (589)
                      +|....+..         .++.|.. ++    +..+.+.++++.+++  .++++.+     ..+++.|.++   .+++||
T Consensus       160 ~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE  238 (478)
T 2y0c_A          160 NPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNE  238 (478)
T ss_dssp             CCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554444         3554443 34    788999999998875  5777654     4467788876   678899


Q ss_pred             HHHHHHc-CCCHHHHHHHH
Q 007805          505 ARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       505 a~~l~~~-Gv~~~~iD~~~  522 (589)
                      +..+.+. |++++++..++
T Consensus       239 ~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          239 LANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHH
Confidence            9998877 89999998887

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.59  E-value=7.7e-15  Score=148.22  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=120.7

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      |.++||+|||+|.||+++|..|+++  |++|++||+++++++.+.           +.|...           ..++++ 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHH
Confidence            4467999999999999999999987  689999999998876642           122110           234455 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecCC------CCCC-
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH-  451 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~------~p~~-  451 (589)
                      +.++++|+||+|||  .....+++.++.++ ++++++|++.+++..  .+.+.+.++. ..++++.||+      .|.. 
T Consensus        62 ~~~~~aDvVilavp--~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a  139 (290)
T 3b1f_A           62 VFAALADVIILAVP--IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA  139 (290)
T ss_dssp             TTGGGCSEEEECSC--HHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred             HhhcCCCEEEEcCC--HHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence            56789999999999  44457888999888 889998875544322  2455555554 6789999997      4443 


Q ss_pred             -----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          452 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       452 -----~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                           .+..+.++++..++++.++.+.++++.+|+.++++.+
T Consensus       140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 3455778888888999999999999999999888753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.59  E-value=1.5e-14  Score=143.90  Aligned_cols=182  Identities=13%  Similarity=0.088  Sum_probs=131.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +||+|||+|.||+++|..|+++| ++|++||+++++++...+.          .|             +..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            37999999999999999999999 9999999999887764221          01             3344455 667 


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEecCCCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  465 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv~~~~t~  465 (589)
                      ++|+||+|+|  .....+++.++.+  + +++|++.+++++++.+.+.++...+++..+|..|..... ...++++..++
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999  5556677766655  4 889999889999888887776656788886665655544 44577777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CC--------CCcccccccHHHHHHHH-H-HHHcCCCHHHHHHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVG-NC--------TGFAVNRAFFPYSQSAR-L-LVSLGVDVFRIDSAI  522 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~-d~--------~Gfi~nRi~~~~~~Ea~-~-l~~~Gv~~~~iD~~~  522 (589)
                      ++.++.+.++++.+|+.+ +++ +.        .| ..+..+..++ +++ . ....|++++++...+
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g-~~~~~~~~~~-~~l~e~~~~~G~~~~~~~~~~  196 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISG-SGPAYVFYLL-DALQNAAIRQGFDMAEARALS  196 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTT-SHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHc-cHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999876 665 31        11 1112222222 222 1 445699888877766

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.58  E-value=2.7e-15  Score=152.73  Aligned_cols=189  Identities=10%  Similarity=0.034  Sum_probs=131.6

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .|             +...+++ +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            4578999999999999999999999999999999998776422           12             2344555 667


Q ss_pred             CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC-C--CCCeee
Q 007805          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA-H--VMPLLE  457 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~-~--~~~lve  457 (589)
                      ++||+||+|+|++..++. ++.  .+... .++++|++.++..+..  .+...+. ...+|+..+.+.++ .  ...++.
T Consensus        64 ~~aDvVi~~vp~~~~~~~-v~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHATHE-VLGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHHHH-HHTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHHHH-Hhcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            899999999997655544 444  56554 5777776555443322  3333332 33456665332211 1  113444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEE--cC--CCCccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  524 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v--~d--~~Gfi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~  524 (589)
                      ++.+   ++++++.++++++.+|++++++  ++  ..|...+-++   ...++|++.+.++ |++++++..++ .+
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~  214 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLET  214 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            5555   7999999999999998899999  75  5567777222   3456799988876 89999998888 44

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.58  E-value=1.7e-14  Score=147.50  Aligned_cols=193  Identities=12%  Similarity=0.052  Sum_probs=129.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (589)
                      ++||+|||+|.||.+||..|+++| ++|++||++++..+++.+..+    ...+.|             + .+ +..+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~----~~~~~g-------------~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRA----RAAELG-------------V-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHH----HHHHTT-------------C-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHH----HHHHCC-------------C-CCCCHHHHH
Confidence            468999999999999999999999 999999999842221111111    111222             2 23 333778


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCC--CCCCCeeeEec
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP--AHVMPLLEIVR  460 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p--~~~~~lveiv~  460 (589)
                      ++||+||+|||++...  +.+.++.+.++++++|++.++..+.+  .+.+.+. ...+|+....+.|  .....+..++.
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg  163 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA  163 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence            9999999999976654  45588999999999888766443322  3333332 2334554332322  23445666777


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc------ccccc---cHHHHHHHHHHHHc-CCCHHHHHHHHHhc
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF------AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAIRSF  525 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf------i~nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~~~~  525 (589)
                      ++.   +  +.++++++.+|+.++++++.+|-      +.|-+   ....++|++.+.+. |++++.++.+..+.
T Consensus       164 g~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          164 GRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             STT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             CCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            743   2  78999999999999999876662      33333   35667899998876 89987777666443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=154.71  Aligned_cols=186  Identities=16%  Similarity=0.145  Sum_probs=134.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +++|+|||+|.||..+|..|++.|++|++||+++++++...+           .|             +...++. +.++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   85 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVVS   85 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHHh
Confidence            578999999999999999999999999999999987765321           12             2233444 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHH---HHHhCCCCcEEEecCCCCC--HHHHhcccC-CCCcEEEecCCCCC---CCCCeee
Q 007805          387 DVDMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (589)
                      ++|+||+|+|+...++. ++.+   +.+.++++++|++.+++.+  ...+.+.+. .+.++++.++++.+   ..+.++.
T Consensus        86 ~~DvVi~av~~~~~~~~-v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~  164 (316)
T 2uyy_A           86 TCDITFACVSDPKAAKD-LVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI  164 (316)
T ss_dssp             HCSEEEECCSSHHHHHH-HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cCCEEEEeCCCHHHHHH-HHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence            89999999996665544 4443   3367788888876554332  344555442 45678887765432   2345566


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cccccc---cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G------fi~nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      ++++   +++.++.+.++++.+|+.++++++ +|      ++.|.+   +..+++|++.+.++ |+++++++.++
T Consensus       165 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~-~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~  235 (316)
T 2uyy_A          165 LAAG---DRGLYEDCSSCFQAMGKTSFFLGE-VGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL  235 (316)
T ss_dssp             EEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EeCC---CHHHHHHHHHHHHHhcCCEEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            6666   688999999999999999988866 33      455666   45677899988765 89999999888

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.55  E-value=1.4e-14  Score=145.36  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=125.7

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (589)
Q Consensus        15 v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (589)
                      |+++..+.. ..|+++..+.+.+.++++.+.++ .+++|+|+++|     |+|+++....        + .....++ ..
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~a  183 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AA  183 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HH
Confidence            444444444 35999999999999999999988 89999999876     8888654210        1 1112333 33


Q ss_pred             H---HhCCCcEEEEeCCcccchh-hHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805           94 I---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (589)
Q Consensus        94 l---~~~~kp~iaav~G~a~GgG-~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  169 (589)
                      +   ...++|+|++|+|.|.||| +.++++||++||.++|+|++.           +...+++.+|..      ++++..
T Consensus       184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~  246 (304)
T 2f9y_B          184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQ  246 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTT
T ss_pred             HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccC
Confidence            4   4559999999999999999 778999999999999999987           456677777753      578999


Q ss_pred             CHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       170 ~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      +|++++++|+||.|++++++.+.+.+++..++..+
T Consensus       247 ~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          247 RSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             BHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.55  E-value=3.5e-15  Score=160.22  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=101.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLL  535 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~  535 (589)
                      ..+++++.+.+.++.+.+|+.++.+  .+|+|+||++.+++|||++++++||  +++|||.++ .|+|||+   |||+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~  407 (463)
T 1zcj_A          330 HKPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYA  407 (463)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHH
Confidence            3478999998888888888766543  3799999999999999999999998  599999999 9999998   999999


Q ss_pred             HHhchHHHHHHHHHHHHhCCC--CCCchHHHHHHHHcCCCCcccce
Q 007805          536 DLAGYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGRNGNKGFS  579 (589)
Q Consensus       536 D~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~g~~G~~Gfy  579 (589)
                      |.+|+|+++++++.|++.+++  ++.|+++|++|+++|    +.|.
T Consensus       408 D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G----~~~~  449 (463)
T 1zcj_A          408 ASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG----SPPL  449 (463)
T ss_dssp             HHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTT----CCCG
T ss_pred             HHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcC----CCcc
Confidence            999999999999999999998  567999999999999    6675

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.55  E-value=7.3e-14  Score=140.36  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      |++|+|||+|.||+++|..|++.|+  +|++||+++++++.+.           +.|..           ...++++ +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCc-----------ccccCCHHHH
Confidence            4689999999999999999999999  9999999998876642           12211           0123455 66


Q ss_pred             CC-CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC----------
Q 007805          385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----------  451 (589)
Q Consensus       385 ~~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~----------  451 (589)
                      ++ +||+||+|+|  .....+++.++.+.++++++|++.+++..  ...+.+.++.  ++++.||+..+.          
T Consensus        59 ~~~~aDvVilavp--~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCC--HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 9999999999  44566888899999999988876444332  2344444432  488888865432          


Q ss_pred             --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       452 --~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                        .+..+.++++..++++.++.+.++++.+|.+++++.+
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              3455778888888999999999999999999988864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.55  E-value=6e-14  Score=140.80  Aligned_cols=164  Identities=17%  Similarity=0.157  Sum_probs=119.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+++|..|.+.|++|++||+++++++.+.           +.|..           ...+++++.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLV-----------DEAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCC-----------ccccCCHHHhCCC
Confidence            3799999999999999999999999999999998876642           11211           0234455333899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCee
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLL  456 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lv  456 (589)
                      |+||+|+|  .....+++.++.+.++++++|++. ++.....+........++++.||.....            ....+
T Consensus        59 D~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~  135 (279)
T 2f1k_A           59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (279)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             CEEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence            99999999  556778899999999999988775 4455433332222223899999875221            23367


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcccccc
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVNRA  497 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi~nRi  497 (589)
                      .++++..++++..+.+.++++.+|.+++++.+ ..+.+...+
T Consensus       136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~  177 (279)
T 2f1k_A          136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWI  177 (279)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence            78888888999999999999999999988854 344444444

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.53  E-value=4.9e-14  Score=139.88  Aligned_cols=184  Identities=12%  Similarity=0.092  Sum_probs=131.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++||+|||+|.||..++..|.+.|++|.+||+++++++...+.+          |             +...+++ +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------A-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------T-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------C-------------CEeeCCHHHHHh
Confidence            35899999999999999999999999999999998877643210          1             2334455 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEecCCCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  465 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv~~~~t~  465 (589)
                      ++|+||+|+|  .....+++.+    +.+++++++.+++++++.+.+..+...+++..||..|..... ...++++..++
T Consensus        60 ~~D~Vi~~v~--~~~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIK--PQLFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSC--GGGHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeC--cHhHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999998  3344455544    347788888888888888877776555788888887776654 45567787889


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC-C-c-----ccccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCT-G-F-----AVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~-G-f-----i~nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~  522 (589)
                      ++.++.++++++.+| .++++++.. . +     -.|.+++.+. +++  .+...|++++++-.++
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~-~~la~~~~~~Gl~~~~~~~~~  197 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFI-EALAKAGVKNGIPKAKALEIV  197 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999 566665421 0 0     0112222222 333  2456689888776665

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.53  E-value=2.1e-14  Score=137.95  Aligned_cols=140  Identities=16%  Similarity=0.182  Sum_probs=110.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+++.+.|..++.+++++.|+|.-    .|.|+++..                ...++ +.+..+++||++.++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~  111 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM  111 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence            488999999999999999887788888863    344544332                22455 668889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhh------------------hhhHhhhcCH--HHHHHHHH
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG------------------TQRLPRLVGL--SKAIEMML  164 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~------------------~~~l~~~~G~--~~a~~l~l  164 (589)
                      |.|.++|+.|+++||.  |+|.++++|++++.. |..|..|.                  ...+++..|.  .++.+++.
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~  190 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE  190 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  999999999999987 44443333                  2457777776  48889999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEE  188 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~  188 (589)
                      +|+.++|+||+++||||+|+++++
T Consensus       191 ~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          191 RDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             CCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999999999999999999998765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.53  E-value=2.1e-14  Score=145.60  Aligned_cols=187  Identities=18%  Similarity=0.194  Sum_probs=128.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||..+|..|++.|++|++||+++++.+...+           .|             +...+++ +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            48999999999999999999999999999999988766422           12             2334455 55788


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCC-CCC--CCCCeeeEe
Q 007805          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF-SPA--HVMPLLEIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~-~p~--~~~~lveiv  459 (589)
                      +|+||+|+|+...++..++  .++.+.++++++|++.+++.+.  ..+.+.+.. ...++....+ +++  ....+..++
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999996665544443  5688889999988876665542  345554432 2234332111 111  011122333


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCccc---ccccH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFF----PYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi~---nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+   +++.++.+.++++.+|..++++++ ..|...   |+.+.    ..++|++.+.++ |+++++++.++
T Consensus       142 ~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  210 (299)
T 1vpd_A          142 GG---DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI  210 (299)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33   789999999999999999998854 344432   33333    567799887755 89999998887

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.53  E-value=3e-14  Score=144.61  Aligned_cols=186  Identities=17%  Similarity=0.134  Sum_probs=131.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||..+|..|++.|++|++||+++++.+...+           .|             +...+++ +.+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   60 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAAA   60 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            58999999999999999999999999999999988765321           12             2334455 55778


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCCCC----CCCeeeE
Q 007805          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLEI  458 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~~p~~----~~~lvei  458 (589)
                      +|+||+|+|.+..++..+.  .++.+.++++++|++.+++.+  ...+.+.+.. ..+++.. |..+..    ...+..+
T Consensus        61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~  139 (301)
T 3cky_A           61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIM  139 (301)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEE
Confidence            9999999996665554443  378888999999988877763  3455554432 2344432 221110    0223444


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc----cccc---cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA----VNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi----~nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      +.+   +++.++.+.++++.+|..++++++ ..|..    .|.+   +...++|++.+.+. |+++++++.++
T Consensus       140 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  209 (301)
T 3cky_A          140 VGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII  209 (301)
T ss_dssp             EES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            444   789999999999999999888854 33433    4555   34567899987765 89999998887

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.52  E-value=2.6e-14  Score=152.65  Aligned_cols=205  Identities=17%  Similarity=0.153  Sum_probs=135.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChH----HHHHHHHHH------HHHHHhhHhcCCCCHHHHHHHhh
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK  374 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~  374 (589)
                      +++||+|||+|.||.++|..|+++ |+ +|++||++++    +++...+..      +..++.++++        ....+
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            467999999999999999999999 99 9999999999    777642210      0000111100        00135


Q ss_pred             cccccCCccCCCCCCEEEEeccCCh----------HHHHHHHHHHHHhCCCCcEEEecCCCCCHHH---Hh-----cccC
Q 007805          375 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLNI---VG-----EKTS  436 (589)
Q Consensus       375 ~i~~~~~~~~~~~aDlVIeavpe~~----------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~---~~-----~~~~  436 (589)
                      ++.++++.+++++||+||+|||++.          .......+.|.++++++++|+. .||+++..   +.     +...
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVL-ESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEE-CSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEE-eCCCChHHHHHHHHHHHHHhcC
Confidence            6888888888999999999998763          3345667889999999998764 34544431   21     1111


Q ss_pred             C--CCcE-EEecCCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCC-----Cccccccc
Q 007805          437 S--QDRI-IGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCT-----GFAVNRAF  498 (589)
Q Consensus       437 ~--~~r~-ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d~~-----Gfi~nRi~  498 (589)
                      .  ...| +.   ++|....+.-         .|+.|  .+++..+.++++++.+ ++.++++.+..     .++.|-++
T Consensus       168 ~~~~~d~~v~---~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~  242 (478)
T 3g79_A          168 LKAGEDFALA---HAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR  242 (478)
T ss_dssp             CCBTTTBEEE---ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCcCCceeEE---eCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence            1  1111 11   2333222111         24433  3788889999999999 88888876532     23334443


Q ss_pred             ---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805          499 ---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (589)
Q Consensus       499 ---~~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~  525 (589)
                         .+++||+..+.+. |++++++=.++ ...
T Consensus       243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          243 DLQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence               5677999988877 99999987777 444

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.52  E-value=7.1e-14  Score=144.67  Aligned_cols=185  Identities=11%  Similarity=0.064  Sum_probs=129.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      .+||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .|             +..++++ +.++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------EG-------------IAGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CEEeCCHHHHHh
Confidence            478999999999999999999999999999999998776421           12             3344555 4556


Q ss_pred             CC---CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhccc-CCCCcEEEecCCCCC---CCCCeee
Q 007805          387 DV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPA---HVMPLLE  457 (589)
Q Consensus       387 ~a---DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~-~~~~r~ig~h~~~p~---~~~~lve  457 (589)
                      ++   |+||+|||.+  ...+++.++.+.++++++|++.+++.+.+  .+...+ .+..+|+....+.++   ..++ ..
T Consensus        78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~i  154 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CL  154 (358)
T ss_dssp             HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EE
T ss_pred             cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-ee
Confidence            66   9999999977  46677899999999999998877765533  233333 233345554322211   1122 22


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcC--------------------CeeEEEcC-CCCccc----cccc---HHHHHHHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV----NRAF---FPYSQSARLLV  509 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG--------------------~~~v~v~d-~~Gfi~----nRi~---~~~~~Ea~~l~  509 (589)
                      ++.+   ++++++.++++++.+|                    +.++++++ ..|..+    |-+.   ...+.|++.++
T Consensus       155 m~GG---~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la  231 (358)
T 4e21_A          155 MIGG---EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL  231 (358)
T ss_dssp             EEES---CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecC---CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334   7899999999999999                    57788865 344444    3222   33456999999


Q ss_pred             Hc-------------------------CCCHHHHHHHH
Q 007805          510 SL-------------------------GVDVFRIDSAI  522 (589)
Q Consensus       510 ~~-------------------------Gv~~~~iD~~~  522 (589)
                      ++                         |+++++|-.+|
T Consensus       232 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~  269 (358)
T 4e21_A          232 HHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVW  269 (358)
T ss_dssp             HTTTCC--------------CGGGCCCCCCHHHHHHHH
T ss_pred             HhcccccccccccccccccccchhcccCCCHHHHHHHH
Confidence            87                         56888888887

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.51  E-value=1.9e-13  Score=139.34  Aligned_cols=201  Identities=12%  Similarity=0.116  Sum_probs=130.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc---cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~  384 (589)
                      ++||+|||+|.||+++|..|+++|++|++||+++++++...+.           |.............+..+++.   +.
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-----------GLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----------CEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-----------CEEEEeCCCeeEecceeecchhhccc
Confidence            4689999999999999999999999999999999887764321           100000000000112222322   23


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEe-cCCCCCCCC---------
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGA-HFFSPAHVM---------  453 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~-h~~~p~~~~---------  453 (589)
                      ++++|+||+|+|.  ....+++.++.++++++++|++.++++.. ..+.+.++. .++++. ++...+..+         
T Consensus        72 ~~~~d~vi~~v~~--~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTKA--QQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSCH--HHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEecc--ccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecC
Confidence            4599999999994  45678889999999999999998888776 456555543 367743 333222111         


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cccc------------------------cccHHHHHH
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN------------------------RAFFPYSQS  504 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G-----fi~n------------------------Ri~~~~~~E  504 (589)
                      ..+.+.....++++..+.+.++++.+|..+++..|..+     ++.|                        .++...+.|
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E  228 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISE  228 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHH
Confidence            11234444456789999999999999998887766311     1112                        234556678


Q ss_pred             HHHHHHc-CCCH--HHHHHHH
Q 007805          505 ARLLVSL-GVDV--FRIDSAI  522 (589)
Q Consensus       505 a~~l~~~-Gv~~--~~iD~~~  522 (589)
                      ++.+.+. |+++  +.+...+
T Consensus       229 ~~~la~~~G~~~~~~~~~~~~  249 (316)
T 2ew2_A          229 FAAVAEKEAIYLDQAEVYTHI  249 (316)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCChHHHHHHH
Confidence            8888764 8844  4554444

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.51  E-value=8.8e-15  Score=148.20  Aligned_cols=184  Identities=18%  Similarity=0.137  Sum_probs=125.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      ||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..++++ +.++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~~   57 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------AG-------------EQVVSSPADVAEKA   57 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------TT-------------CEECSSHHHHHHHC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcC
Confidence            7999999999999999999999999999999988766421           12             3344555 557889


Q ss_pred             CEEEEeccCChHHHHHHHHH---HHHhCCCCcEEEecCCCCCHHHHhc---ccCCCCcEEEecCCCCCCCC-------Ce
Q 007805          389 DMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHVM-------PL  455 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~~~r~ig~h~~~p~~~~-------~l  455 (589)
                      |+||+|+|....++ .++.+   +.+.++++++|++ ++++.+.....   .....    +.+|.+.|...       ..
T Consensus        58 Dvvi~~vp~~~~~~-~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~~  131 (296)
T 2gf2_A           58 DRIITMLPTSINAI-EAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSGN  131 (296)
T ss_dssp             SEEEECCSSHHHHH-HHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTC
T ss_pred             CEEEEeCCCHHHHH-HHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcCc
Confidence            99999998555543 44544   3446788898888 78877765432   22211    12222222111       11


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-Cc---ccccccH----HHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-GF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-Gf---i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~  525 (589)
                      ..++.+  .+++.++.+.++++.+|+.++++++.. |.   ++|+.+.    .+++|++.+.+. |+++++++.++ .+.
T Consensus       132 ~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~  209 (296)
T 2gf2_A          132 LTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSS  209 (296)
T ss_dssp             EEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred             EEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence            233333  368889999999999999998886521 21   2233432    578899987765 99999999988 433

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.50  E-value=2.7e-14  Score=138.20  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=113.6

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      +.|+||+|||+|.||.++|..|+++|++|++ ||++++++++..+..          |            .....++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence            4568999999999999999999999999999 999999877643211          1            1112334466


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--------------CHHHHhcccCCCCcEEEecCCCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--------------DLNIVGEKTSSQDRIIGAHFFSPA  450 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--------------~~~~~~~~~~~~~r~ig~h~~~p~  450 (589)
                      ++++|+||+|+|  .....+++.++.+ + ++++|++.+.++              ..+.+++.++ ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            889999999998  6667788888776 4 577888888777              3456666665 4577777665544


Q ss_pred             CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       451 ~~~~---------lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                      ....         ...++.+  .++++.+.++++++.+|++++.+++
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            3222         2223333  4699999999999999999999865

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.49  E-value=1.6e-14  Score=146.08  Aligned_cols=182  Identities=17%  Similarity=0.147  Sum_probs=126.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++||+|||+|.||..+|..|++.|++|++|| ++++++...+           .|             +...+++ +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            3589999999999999999999999999999 9877665321           12             2334455 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC--------CC
Q 007805          387 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------VM  453 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~--------~~  453 (589)
                      ++|+||+|+|.+..++. ++.   ++.+.++++++|++.+++.+  ...+.+.+...    +.|+.+.|.        ..
T Consensus        58 ~~D~vi~~vp~~~~~~~-v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g  132 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVED-VLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREG  132 (295)
T ss_dssp             TCSEEEECCSSHHHHHH-HHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHT
T ss_pred             cCCEEEEECCCHHHHHH-HHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcC
Confidence            99999999996655443 444   67777889998887666543  23455444321    233333222        12


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC----cccccc---cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~G----fi~nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+..++.+   +++.++.+.++++.+|..++++++ ..|    ++.|.+   +...++|++.+.++ |+++++++.++
T Consensus       133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~  207 (295)
T 1yb4_A          133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL  207 (295)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33445554   789999999999999999988865 333    233443   23467899988866 89999999888

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.49  E-value=6.4e-14  Score=145.12  Aligned_cols=197  Identities=14%  Similarity=0.064  Sum_probs=132.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|.||+++|..|+++|++|++||++++.++...+...+.  .+.. | +.      ...++.+++|+ +++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~--~~l~-g-~~------l~~~i~~t~d~~ea~   97 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNN--RYLP-N-YP------FPETLKAYCDLKASL   97 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBT--TTBT-T-CC------CCTTEEEESCHHHHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCc--ccCC-C-Cc------cCCCeEEECCHHHHH
Confidence            356899999999999999999999999999999999877653311000  0000 0 00      11346677787 678


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH------HHhcccCCCCcE-EEecCCCCC---CCCCe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRI-IGAHFFSPA---HVMPL  455 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~------~~~~~~~~~~r~-ig~h~~~p~---~~~~l  455 (589)
                      ++||+||+|||  ....+++++++.++++++++|++.++++...      .+.+.++. ..+ +-.-|....   ...+.
T Consensus        98 ~~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vlsgP~~a~ev~~g~pt  174 (356)
T 3k96_A           98 EGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVISGPSLATEVAANLPT  174 (356)
T ss_dssp             TTCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEEESSCCHHHHHTTCCE
T ss_pred             hcCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEEECccHHHHHHcCCCe
Confidence            99999999999  5578899999999999999999998887764      23343331 121 111121110   01111


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc---cHHHHHHHHHHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLLVS  510 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi---~~~~~~Ea~~l~~  510 (589)
                      ..++.+  .+++..+.+++++...+.++++..|..|                      +-.|-.   ....++|+.++.+
T Consensus       175 ~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~  252 (356)
T 3k96_A          175 AVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVS  252 (356)
T ss_dssp             EEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            112222  4788999999999999999988877544                      222322   3444568888886


Q ss_pred             c-CCCHHHH
Q 007805          511 L-GVDVFRI  518 (589)
Q Consensus       511 ~-Gv~~~~i  518 (589)
                      . |++++++
T Consensus       253 a~G~~~~t~  261 (356)
T 3k96_A          253 VFGGKQETL  261 (356)
T ss_dssp             HTTCCHHHH
T ss_pred             HhCCChHhh
Confidence            5 8888764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.49  E-value=9.5e-14  Score=140.72  Aligned_cols=139  Identities=17%  Similarity=0.107  Sum_probs=106.4

Q ss_pred             ccceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .+++|+||| +|.||++||..|++.|++|++||++++.                                    +..+.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~   63 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESIL   63 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHh
Confidence            457899999 9999999999999999999999998652                                    001346


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC----CCCeeeEe
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIV  459 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~----~~~lveiv  459 (589)
                      ++||+||+|||.+  ...+++.++.++++++++|++.+|...  ++.+....  +.++++.||..++.    ....+.++
T Consensus        64 ~~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           64 ANADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             TTCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEE
T ss_pred             cCCCEEEEeCCHH--HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEe
Confidence            7899999999944  478899999999999998876544322  33343333  46899999965442    33345566


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      ++.  +++.++.+.++++.+|.+++++.
T Consensus       140 ~~~--~~~~~~~v~~l~~~~G~~~~~~~  165 (298)
T 2pv7_A          140 DGR--FPERYEWLLEQIQIWGAKIYQTN  165 (298)
T ss_dssp             EEE--CGGGTHHHHHHHHHTTCEEEECC
T ss_pred             cCC--CHHHHHHHHHHHHHcCCEEEECC
Confidence            654  78889999999999999988875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.48  E-value=1.3e-13  Score=136.97  Aligned_cols=180  Identities=12%  Similarity=0.071  Sum_probs=124.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      .+||+|||+|.||++||..|+++|    ++|++||+++++                 .|             +...++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            358999999999999999999999    799999999764                 11             2334444 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEecC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRT  461 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv~~  461 (589)
                      +.++++|+||+|+|.+  ...+++.++.+.+ ++++|++.+++++.+.+.+.++...+++...+..|..... ...++++
T Consensus        54 ~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            5678899999999943  4678888998888 5677888999999887777665543444433444443333 3345677


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCccc------ccccHHHHHHHHH--HHHcCCCHHHHHHHH
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-TGFAV------NRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~Gfi~------nRi~~~~~~Ea~~--l~~~Gv~~~~iD~~~  522 (589)
                      +.++++.++.+.++++.+|+ ++++++. .+.+.      |-.++ .+.|++.  ....|+++++.-..+
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~-~~~~al~~~~~~~Gl~~~~~~~~~  198 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVY-LFIESLIDAGVKNGLSRELSKNLV  198 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77899999999999999997 7777532 11111      11121 2224332  346688877655444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.48  E-value=1.6e-13  Score=147.64  Aligned_cols=202  Identities=16%  Similarity=0.187  Sum_probs=136.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--HHHHHHHh-----hcccc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNAL-----KMLKG  378 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~-----~~i~~  378 (589)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++...            .|...  ....+..+     ..+.+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~------------~g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN------------SPTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh------------CCCCCcCCCCHHHHHHHhhcCCEEE
Confidence            57899999999999999999998  899999999999877632            12110  00011111     24667


Q ss_pred             cCCc-cCCCCCCEEEEeccCChHH-------------HHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCC-Cc
Q 007805          379 VLDY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQ-DR  440 (589)
Q Consensus       379 ~~~~-~~~~~aDlVIeavpe~~~~-------------k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~-~r  440 (589)
                      ++++ +++++||+||+|||+....             ...+.+++.++++++++|+.. |+.++.   .+...+... ..
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~-STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEK-STVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEEC-SCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEEC-CcCCchHHHHHHHHHHHhCCC
Confidence            7776 5788999999999865532             456778899999999887643 333332   233322211 11


Q ss_pred             EEEec-CCCCCCCCCeee---------E-ecCCC--CCHHHHHHHHHHHHHc-CCeeEEEcC-----CCCccccccc---
Q 007805          441 IIGAH-FFSPAHVMPLLE---------I-VRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRAF---  498 (589)
Q Consensus       441 ~ig~h-~~~p~~~~~lve---------i-v~~~~--t~~e~~~~~~~l~~~l-G~~~v~v~d-----~~Gfi~nRi~---  498 (589)
                      .+..+ .++|....+...         + +.++.  +++++.+.+.++++.+ |+.++++.+     ..+++.|.+.   
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            11111 244444443332         3 44433  3788999999999998 778888754     3467778864   


Q ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          499 FPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       499 ~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+++||+..+.++ |+++++++.++
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~  256 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAI  256 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5788999999877 89999999998

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.47  E-value=9.5e-14  Score=148.27  Aligned_cols=198  Identities=14%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH------hhcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  382 (589)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+..          -.+.....+..      .+++.+++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCH
Confidence            3799999999999999999999999999999999887743210          00000001111      2356778887


Q ss_pred             -cCCCCCCEEEEeccCChH--------HHHHHHHHHHHhCCC---CcEEEecCCCCCHH----HHhcccCC--CCc----
Q 007805          383 -SEFKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLN----IVGEKTSS--QDR----  440 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~--------~k~~v~~~l~~~~~~---~~ii~s~ts~~~~~----~~~~~~~~--~~r----  440 (589)
                       +++++||+||+|||+...        ...++++++.+++++   +++|+..+ +.++.    .+...+..  ..+    
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCc
Confidence             568999999999987553        144577889998888   88876443 33322    22222211  111    


Q ss_pred             -EEEecCCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----CCCccccccc---HHHH
Q 007805          441 -IIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYS  502 (589)
Q Consensus       441 -~ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-----~~Gfi~nRi~---~~~~  502 (589)
                       .+.   ++|....+..         .++.+. ++++..+.+.++++.+|.. +++.+     ..+++.|.+.   .+++
T Consensus       150 ~~v~---~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~  224 (436)
T 1mv8_A          150 FGVG---TNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFA  224 (436)
T ss_dssp             BEEE---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEE---ECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             122   2343333322         244443 3688999999999999984 44443     2345667654   5788


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH
Q 007805          503 QSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       503 ~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      ||+..+.++ |+++++++.++
T Consensus       225 nE~~~l~~~~Gid~~~v~~~~  245 (436)
T 1mv8_A          225 NEIGNIAKAVGVDGREVMDVI  245 (436)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHh
Confidence            999988877 89999999988

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.47  E-value=3.4e-13  Score=143.22  Aligned_cols=197  Identities=15%  Similarity=0.124  Sum_probs=132.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--HHHHH----H--HhhcccccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKAN----N--ALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~----~--~~~~i~~~~  380 (589)
                      -+|+|||+|.||.++|.+|+++||+|++||+++++++...+            |...  ....+    .  ..+++++++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~------------g~~~~~epgl~~~~~~~~~~g~l~~tt   76 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQ------------NVMPIYEPGLDALVASNVKAGRLSFTT   76 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTT------------TCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhc------------CCCCccCCCHHHHHHhhcccCCEEEEC
Confidence            46999999999999999999999999999999998887532            2100  00011    1  125678889


Q ss_pred             Cc-cCCCCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhccc----CCCCcEEE
Q 007805          381 DY-SEFKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT----SSQDRIIG  443 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~----~~~~r~ig  443 (589)
                      |+ +++++||+||+|||+..+         ...++++++.++++++++|++.| ++++.   .+...+    ....-.+.
T Consensus        77 d~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v~  155 (446)
T 4a7p_A           77 DLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKVV  155 (446)
T ss_dssp             CHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred             CHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceEE
Confidence            98 789999999999987653         46788899999999999887644 55543   222211    11111222


Q ss_pred             ecCCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCe---eEEEcCCC-----Cccccccc---HHHHH
Q 007805          444 AHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRAF---FPYSQ  503 (589)
Q Consensus       444 ~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~---~v~v~d~~-----Gfi~nRi~---~~~~~  503 (589)
                         ++|....+..         .++.|. .++++.+.++++++.+++.   ++++.+..     +++.|-+.   .+++|
T Consensus       156 ---~~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~n  231 (446)
T 4a7p_A          156 ---SNPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFIN  231 (446)
T ss_dssp             ---ECCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---eCcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2222221111         233332 3688999999999999875   57765532     23445443   56678


Q ss_pred             HHHHHHHc-CCCHHHHHHHH
Q 007805          504 SARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       504 Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      |+..+.+. |++++++=.++
T Consensus       232 E~~~l~~~~GiD~~~v~~~~  251 (446)
T 4a7p_A          232 EIADLCEQVGADVQEVSRGI  251 (446)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH
Confidence            99988876 99999988887

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.47  E-value=4.5e-13  Score=142.98  Aligned_cols=203  Identities=15%  Similarity=0.118  Sum_probs=134.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--HhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~  385 (589)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+....    ..+.| + .+....  ..+++++++++ +++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~----i~e~g-l-~~~l~~~~~~~~l~~t~d~~ea~   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIP----IYEPG-L-EKMIARNVKAGRLRFGTEIEQAV   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSC----CCSTT-H-HHHHHHHHHTTSEEEESCHHHHG
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCc----ccCCC-H-HHHHHhhcccCcEEEECCHHHHH
Confidence            589999999999999999999999999999999988775331000    00000 0 000000  02457788888 568


Q ss_pred             CCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCC-------CCcE-EEecC
Q 007805          386 KDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------QDRI-IGAHF  446 (589)
Q Consensus       386 ~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~-------~~r~-ig~h~  446 (589)
                      ++||+||+|||+..        ....++++++.++++++++|++.| ++++.   .+...+..       ...+ +.   
T Consensus        77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~---  152 (450)
T 3gg2_A           77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA---  152 (450)
T ss_dssp             GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE---
T ss_pred             hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE---
Confidence            99999999998764        267788899999999999887655 34432   22222110       0111 22   


Q ss_pred             CCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCC--eeEEEcCCC-----Ccccccc---cHHHHHHHHH
Q 007805          447 FSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNCT-----GFAVNRA---FFPYSQSARL  507 (589)
Q Consensus       447 ~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~--~~v~v~d~~-----Gfi~nRi---~~~~~~Ea~~  507 (589)
                      ++|....+..         .++.|. .++++.+.++++++.+++  .++++.+..     +++.|-+   ..+++||+..
T Consensus       153 ~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~  231 (450)
T 3gg2_A          153 SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN  231 (450)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333222211         133321 368999999999999987  366665533     3455654   3567789999


Q ss_pred             HHHc-CCCHHHHHHHH
Q 007805          508 LVSL-GVDVFRIDSAI  522 (589)
Q Consensus       508 l~~~-Gv~~~~iD~~~  522 (589)
                      +.+. |++++++-.++
T Consensus       232 l~~~~Gid~~~v~~~~  247 (450)
T 3gg2_A          232 LCERVGADVSMVRLGI  247 (450)
T ss_dssp             HHHHHTCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHH
Confidence            8877 99999998888

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.46  E-value=1.7e-13  Score=147.52  Aligned_cols=192  Identities=14%  Similarity=0.062  Sum_probs=131.9

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.-++|+|||+|.||++||..|+++|++|++||+++++++...+...         +           ..+..++++ +.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~   72 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP---------G-----------KKLVPYYTVKEF   72 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHST---------T-----------SCEEECSSHHHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCC---------C-----------CCeEEeCCHHHH
Confidence            45578999999999999999999999999999999998876533110         0           124455565 44


Q ss_pred             CCC---CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCe
Q 007805          385 FKD---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPL  455 (589)
Q Consensus       385 ~~~---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~l  455 (589)
                      +++   +|+||+|||.... ..+++.++.+.++++++|++.+++.+..  .+.+.+. ...+++++.....+   ..++ 
T Consensus        73 v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-  150 (480)
T 2zyd_A           73 VESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-  150 (480)
T ss_dssp             HHTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-
T ss_pred             HhCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-
Confidence            555   9999999996544 4467789999999999998877776542  3444332 23456654322111   1223 


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCC----ccccccc---HHHHHHHHHHHHc--CCCHHHH
Q 007805          456 LEIVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRI  518 (589)
Q Consensus       456 veiv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~~G----fi~nRi~---~~~~~Ea~~l~~~--Gv~~~~i  518 (589)
                      . ++.+.  +++.++.++++++.+|.+       ++++++ ..|    ++.|.+.   ...+.|++.+.+.  |++++++
T Consensus       151 ~-i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~  227 (480)
T 2zyd_A          151 S-IMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL  227 (480)
T ss_dssp             E-EEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             e-EEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            2 44432  689999999999999987       566654 222    2346653   4566799998876  9999988


Q ss_pred             HHHH
Q 007805          519 DSAI  522 (589)
Q Consensus       519 D~~~  522 (589)
                      ..++
T Consensus       228 ~~l~  231 (480)
T 2zyd_A          228 AQTF  231 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.45  E-value=9.2e-14  Score=149.94  Aligned_cols=190  Identities=13%  Similarity=0.074  Sum_probs=131.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      .+|+|||+|.||++||..|+++|++|++||+++++++...+..       .. +           ..+..++++ +.+++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~-~-----------~gi~~~~s~~e~v~~   71 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANE-------AK-G-----------KSIIGATSIEDFISK   71 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT-------TT-T-----------SSEECCSSHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc-------cc-C-----------CCeEEeCCHHHHHhc
Confidence            5799999999999999999999999999999999887653200       00 0           124455565 44444


Q ss_pred             ---CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCCC---CCCeeeE
Q 007805          388 ---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  458 (589)
Q Consensus       388 ---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~~---~~~lvei  458 (589)
                         +|+||+|||....+ .+++.++.+.++++++|++.+++.+.  ..+.+.+. ...+|+++.....+.   ..+  .+
T Consensus        72 l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i  148 (497)
T 2p4q_A           72 LKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL  148 (497)
T ss_dssp             SCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             CCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence               99999999976554 45668899999999999877766553  23444332 233566543222221   112  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe------eEEEc-CCCCc----cccccc---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDSAI  522 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~------~v~v~-d~~Gf----i~nRi~---~~~~~Ea~~l~~~--Gv~~~~iD~~~  522 (589)
                      +.+.  ++++++.++++++.+|++      +++++ ...|.    +.|.+.   ...++|++.+++.  |++++++..++
T Consensus       149 m~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          149 MPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             EEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             EecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            4332  688999999999999998      66664 33443    357665   5667899998876  89999988776

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.45  E-value=2.2e-13  Score=145.74  Aligned_cols=192  Identities=13%  Similarity=0.036  Sum_probs=130.3

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~-  384 (589)
                      .+++|+|||+|.||.+||..|+++|++|++||+++++++...+           .+...        ..+..++++ +. 
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~g--------~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG--------TKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT--------SSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccCC--------CceeccCCHHHHH
Confidence            4578999999999999999999999999999999998877532           11100        123334454 33 


Q ss_pred             --CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCee
Q 007805          385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (589)
Q Consensus       385 --~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (589)
                        ++++|+||+|||....+ .+++.++.++++++.+|++.+++.+.+  .+...+. ...+|++......+   ..++ .
T Consensus        64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~  141 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-S  141 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-E
T ss_pred             hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-e
Confidence              34699999999976544 456789999999999998877766533  2222222 23456654221111   1122 2


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCee-------EEEcCC-CC----ccccccc---HHHHHHHHHHHHc--CCCHHHHH
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGNC-TG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d~-~G----fi~nRi~---~~~~~Ea~~l~~~--Gv~~~~iD  519 (589)
                      .++.+   ++++++.++++++.+|.++       +++++. .|    .+-|-+.   ...++|++.+++.  |++++++-
T Consensus       142 im~GG---~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~  218 (484)
T 4gwg_A          142 LMPGG---NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA  218 (484)
T ss_dssp             EEEEE---CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eecCC---CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            23344   6889999999999999887       666542 22    2335443   3456799999986  88999887


Q ss_pred             HHH
Q 007805          520 SAI  522 (589)
Q Consensus       520 ~~~  522 (589)
                      .++
T Consensus       219 ~v~  221 (484)
T 4gwg_A          219 QAF  221 (484)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.44  E-value=3.4e-13  Score=142.14  Aligned_cols=195  Identities=15%  Similarity=0.118  Sum_probs=128.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--HHHHH----H--Hhhccccc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKAN----N--ALKMLKGV  379 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~----~--~~~~i~~~  379 (589)
                      =.|..|||+|.||.++|.+|+++||+|++||+++++++...+            |...  +...+    .  ..+++.++
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~------------g~~pi~epgl~~ll~~~~~~g~l~~t   78 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQN------------GQISIEEPGLQEVYEEVLSSGKLKVS   78 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT------------TCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHhhcccCceEEe
Confidence            368999999999999999999999999999999999887532            2110  00011    1  12456777


Q ss_pred             CCccCCCCCCEEEEeccCChH----------HHHHHHHHHHHhCCCCcEEEecCCCCCHHH---Hhccc-C-CC----Cc
Q 007805          380 LDYSEFKDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKT-S-SQ----DR  440 (589)
Q Consensus       380 ~~~~~~~~aDlVIeavpe~~~----------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~-~-~~----~r  440 (589)
                      ++   +++||+||.|||....          ......+.+.++++++++|+. .||+++..   +...+ . ..    ..
T Consensus        79 td---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~~~~d  154 (431)
T 3ojo_A           79 TT---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFTIGED  154 (431)
T ss_dssp             SS---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCCBTTT
T ss_pred             Cc---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCCcCCC
Confidence            76   4589999999997652          345566789999999998764 44555432   22111 1 11    11


Q ss_pred             EEEecCCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-C----Cccccccc---HHHHH
Q 007805          441 IIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-T----GFAVNRAF---FPYSQ  503 (589)
Q Consensus       441 ~ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~----Gfi~nRi~---~~~~~  503 (589)
                      |.-  -++|.+..+.-         .++.|.  ++++.+.++++++.+++.++++.+. .    .++.|-++   .+++|
T Consensus       155 ~~v--~~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~n  230 (431)
T 3ojo_A          155 IYL--VHCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALAN  230 (431)
T ss_dssp             EEE--EECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEE--EECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  13332222111         245442  6899999999999999888777542 1    13334443   46779


Q ss_pred             HHHHHHHc-CCCHHHHHHHH
Q 007805          504 SARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       504 Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      |+..+.+. |++++++=.++
T Consensus       231 E~~~l~e~~GiD~~~v~~~~  250 (431)
T 3ojo_A          231 ELTKICNNLNINVLDVIEMA  250 (431)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH
Confidence            99988877 99999988877

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.44  E-value=1.6e-13  Score=138.39  Aligned_cols=184  Identities=15%  Similarity=0.061  Sum_probs=124.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      |+||+|||+|.||..+|..|++ |++|++||+++++.+...+.           |             +...+..+.+++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence            3589999999999999999999 99999999999887764221           1             112222256789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCC-CC---CCCeeeEec
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSP-AH---VMPLLEIVR  460 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~~p-~~---~~~lveiv~  460 (589)
                      +|+||+|+|.+..+ ..++.++.+.++++++|++.++..+  ...+.+.+.. ..+++.. |..+ +.   ...+..++.
T Consensus        56 ~D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            99999999965444 3466888888889998885443322  3345554433 2245443 3211 10   122233443


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-Cc----ccccc---cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-GF----AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-Gf----i~nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      +   +++.++.+.+++ .+|+.++++++.. +.    +.|.+   +...++|++.+.++ |+++++++.++
T Consensus       134 ~---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  200 (289)
T 2cvz_A          134 G---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI  200 (289)
T ss_dssp             S---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             C---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence            3   789999999999 9999888886642 22    23553   34567799888765 89999998888

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.44  E-value=1.4e-13  Score=141.81  Aligned_cols=235  Identities=15%  Similarity=0.080  Sum_probs=148.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++|+|||+|.||+++|..|...|++|+++|++++. .+.+.           +.|             +..+ ++ +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            468999999999999999999999999999999765 33321           112             2223 44 567


Q ss_pred             CCCCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCCCCCHHHHhccc-CCCCcEEEecCCCCCCC---------CC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MP  454 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~~~~~~~-~~~~r~ig~h~~~p~~~---------~~  454 (589)
                      ++||+||+|+|  ......++. ++.++++++++|++. +++.. .+.... +....+++.||+.|.+.         +.
T Consensus        71 ~~aDvVilavp--~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCC--cHHHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999  444578888 899999999998876 44444 333322 22235999999777541         23


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc----C-CCCcccccccH----HHHHHHH-HHHHcCCCHHHH---
Q 007805          455 LLEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFF----PYSQSAR-LLVSLGVDVFRI---  518 (589)
Q Consensus       455 lveiv~~~~t~~e~~~~~~~l~~~lG~-~--~v~v~----d-~~Gfi~nRi~~----~~~~Ea~-~l~~~Gv~~~~i---  518 (589)
                      .+-++++..++++..+.+..+++.+|. .  ++.+.    + ...++.++.+.    +++..++ .+++.|+++++.   
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e  226 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFE  226 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            344677777888999999999999998 4  55552    1 23444343332    2333333 345779987654   


Q ss_pred             ----HHHH--H--hcCC------CCcHHHHHHHhch-----HHHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCCc
Q 007805          519 ----DSAI--R--SFGL------PIGPFQLLDLAGY-----GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN  575 (589)
Q Consensus       519 ----D~~~--~--~~g~------p~Gpf~~~D~~Gl-----d~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~  575 (589)
                          ...+  .  .-||      -..|-.|.|.+--     +.+...++.+.+.+.+    ...+++++++++.|+
T Consensus       227 ~~~~~~~~~~~~~~gg~~~~r~a~s~p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~----~~~~~~~~~~~~~~r  298 (338)
T 1np3_A          227 CLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQD----GEYAKMFITEGAANY  298 (338)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT----THHHHHHHHHHHTTS
T ss_pred             hhhHHHHHHHHHHhcCHHHHHHhcCCHHHHhhhhcCCccccHHHHHHHHHHHHHHhC----CHHHHHHHHHHhccc
Confidence                1221  1  1121      1267777775432     3444445555444332    244556665555555

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.44  E-value=6.2e-13  Score=139.96  Aligned_cols=197  Identities=17%  Similarity=0.205  Sum_probs=129.6

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHh----hcccccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL----KMLKGVLD  381 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~  381 (589)
                      ..++||+|||+|.||.++|..|++ |++|++||+++++++...+..          ..+.+...+..+    .++++++|
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd  102 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTD  102 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcC
Confidence            346799999999999999999998 999999999999988753310          011111122111    35788888


Q ss_pred             c-cCCCCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCC
Q 007805          382 Y-SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFS  448 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~  448 (589)
                      + +++++||+||+|||++.         .....+.+.+.+ ++++++|+. .|++++.   ++...+..  ..+.   ++
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~~v~---~s  175 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--DNVI---FS  175 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--CCEE---EC
T ss_pred             HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--ccEe---ec
Confidence            7 78999999999999864         345677788888 889988864 4455543   34433332  2222   25


Q ss_pred             CCCCCCee---------eEecCCCCCHHHHHHHHHHHHH--cCC-eeEEEcCC-----CCccccccc---HHHHHHHHHH
Q 007805          449 PAHVMPLL---------EIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGNC-----TGFAVNRAF---FPYSQSARLL  508 (589)
Q Consensus       449 p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~--lG~-~~v~v~d~-----~Gfi~nRi~---~~~~~Ea~~l  508 (589)
                      |....+.-         .++.|.  +++..+.+.+++..  ++. .++++.+.     ..++.|-++   .+++||+..+
T Consensus       176 Pe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l  253 (432)
T 3pid_A          176 PEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSY  253 (432)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433221         234332  45677888999886  553 34555431     123445443   5677999988


Q ss_pred             HHc-CCCHHHHHHHH
Q 007805          509 VSL-GVDVFRIDSAI  522 (589)
Q Consensus       509 ~~~-Gv~~~~iD~~~  522 (589)
                      .+. |++++++=.++
T Consensus       254 ae~~GiD~~~v~~~~  268 (432)
T 3pid_A          254 AESQGLNSKQIIEGV  268 (432)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHH
Confidence            876 99999887777

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.43  E-value=3e-13  Score=145.90  Aligned_cols=201  Identities=13%  Similarity=0.137  Sum_probs=134.3

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--HHHHHHH-----hhcc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNA-----LKML  376 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-----~~~i  376 (589)
                      +.++||+|||+|.||.++|..|+++  |++|++||+++++++...            .+...  ....+..     ..++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~------------~g~~~i~e~gl~~~~~~~~~~~l   74 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWN------------SDKLPIYEPGLDEIVFAARGRNL   74 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH------------CCCCCcCCCCHHHHHHHhhcCCE
Confidence            3467999999999999999999998  799999999999887742            22110  0001111     1346


Q ss_pred             cccCCc-cCCCCCCEEEEeccCCh-------------HHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCC--
Q 007805          377 KGVLDY-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--  437 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~--  437 (589)
                      .+++++ +++++||+||+|||+..             ....+++++|.++++++++|+..| ++++.   .+...+..  
T Consensus        75 ~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~  153 (481)
T 2o3j_A           75 FFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQ  153 (481)
T ss_dssp             EEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHT
T ss_pred             EEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhh
Confidence            777886 77899999999998643             246778889999999999887433 33332   23222211  


Q ss_pred             C----C-cEEEecCCCCCCCCCee---------eEecCCCCC---HHHHHHHHHHHHHcCC-eeEEEcC-----CCCccc
Q 007805          438 Q----D-RIIGAHFFSPAHVMPLL---------EIVRTERTS---AQVILDLMTVGKIIKK-VPVVVGN-----CTGFAV  494 (589)
Q Consensus       438 ~----~-r~ig~h~~~p~~~~~lv---------eiv~~~~t~---~e~~~~~~~l~~~lG~-~~v~v~d-----~~Gfi~  494 (589)
                      .    . -.+..+|   ....+..         .++-|...+   +++.+.++++++.++. .++++.+     ...++.
T Consensus       154 ~~~~~~d~~v~~~P---e~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~  230 (481)
T 2o3j_A          154 KNNENLKFQVLSNP---EFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA  230 (481)
T ss_dssp             C----CCEEEEECC---CCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH
T ss_pred             CcCcCCceEEEeCc---ccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH
Confidence            1    1 1244444   2222111         243322222   3688999999999996 7777644     334566


Q ss_pred             ccc---cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          495 NRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       495 nRi---~~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      |.+   ..+++||+..+.+. |++++++..++
T Consensus       231 N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~  262 (481)
T 2o3j_A          231 NAFLAQRISSINSISAVCEATGAEISEVAHAV  262 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            764   46788999998877 99999999888

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.43  E-value=5.7e-13  Score=143.52  Aligned_cols=190  Identities=13%  Similarity=0.029  Sum_probs=131.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      .++|+|||+|.||.++|..|+++|++|++||+++++++...+...         +           ..+..++++ +.++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHHHh
Confidence            468999999999999999999999999999999998876533110         0           124445555 4444


Q ss_pred             ---CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCCCCC---CCCCeee
Q 007805          387 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLE  457 (589)
Q Consensus       387 ---~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~~p~---~~~~lve  457 (589)
                         ++|+||+|||....+ ..++.++.+.++++++|++.+++.+.  ..+.+.+.. ..++++.....++   ..++  .
T Consensus        65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred             hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence               499999999965544 45668899999999988877766543  345444432 3355554322211   1122  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe--------eEEEcC-CCC----ccccccc---HHHHHHHHHHHHc--CCCHHHHH
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~--------~v~v~d-~~G----fi~nRi~---~~~~~Ea~~l~~~--Gv~~~~iD  519 (589)
                      ++++.  +++..+.++++++.+|.+        +.++++ ..|    ++.|.+.   ...+.|++.+.+.  |++++++.
T Consensus       142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~  219 (474)
T 2iz1_A          142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ  219 (474)
T ss_dssp             EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            33332  789999999999999987        455544 222    3456664   4567799998875  89999988


Q ss_pred             HHH
Q 007805          520 SAI  522 (589)
Q Consensus       520 ~~~  522 (589)
                      .++
T Consensus       220 ~l~  222 (474)
T 2iz1_A          220 AIF  222 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.41  E-value=1.5e-12  Score=131.93  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=102.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ++++++..+...++++.+++.. +-+|.|.-.++++. |.+..+.          .........+ ..+.++++|+|++|
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~~----------g~~~~~a~~l-~al~~~~vPvIavV  205 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEER----------GQSESIATNL-IEMASLKVPVIAIV  205 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhhh----------hhHHHHHHHH-HHHHhCCCCEEEEE
Confidence            6899999999999999988764 44555544333222 3221110          0112233445 56889999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      +|.|.|||+.++++||+++|.++++|++      +.|.++++..+++..+...+.++    +.++|++|+++|+||+|+|
T Consensus       206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence            9999999999999999999999999985      34555555555555555777776    7899999999999999998


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      .
T Consensus       276 e  276 (327)
T 2f9i_A          276 E  276 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.38  E-value=1.7e-12  Score=129.09  Aligned_cols=178  Identities=13%  Similarity=0.080  Sum_probs=116.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ||+|||+|.||.+||..|+++|++|++||+  +++.++...+           .|             +.  ++. +.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~   55 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY   55 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence            799999999999999999999999999998  6666554311           12             12  334 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH---HHHhcccCCCCcEEEecCCCCCC---CCCeeeEec
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIVR  460 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~~~~~~~~~~r~ig~h~~~p~~---~~~lveiv~  460 (589)
                      +||+||+|||++...+.  +.++.+.+++  +|++. |+..+   ..+.+.+.... ++..+.+.++.   .... .++.
T Consensus        56 ~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~  128 (264)
T 1i36_A           56 SCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIAS  128 (264)
T ss_dssp             TSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEE
T ss_pred             cCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEec
Confidence            99999999996654433  3677777776  55544 44433   35566555443 66666555442   2233 3455


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----cccccc----HHHHHHHHHHHHc-CCCHHHHHHHHHhcC
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAIRSFG  526 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~~~~g  526 (589)
                      ++.   +  +.+.+ ++.+|+.++++++.+|.     +.|..+    ...++|++.+.+. |++++.++.+....|
T Consensus       129 g~~---~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~g  198 (264)
T 1i36_A          129 GRD---A--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEMLEYTEG  198 (264)
T ss_dssp             STT---H--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CCc---H--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcC
Confidence            532   2  67778 99999999988765554     223332    4566799887755 998764433334333

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.38  E-value=8.9e-13  Score=126.58  Aligned_cols=157  Identities=16%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      +||+||| +|.||..++..|++.|++|+++|+++++.+...+.+..    .+..            ..+.. +++ +.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            3799999 99999999999999999999999999887665432211    1110            11222 233 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--------------HHHHhcccCCCCcEEEecCCCCCC-
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPAH-  451 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--------------~~~~~~~~~~~~r~ig~h~~~p~~-  451 (589)
                      ++|+||+|+|  .....+++.++.+.++ ++++++.++++.              .+++++.++. .+++..|+..+.. 
T Consensus        64 ~~D~Vi~~~~--~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIP--WEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHH
T ss_pred             cCCEEEEeCC--hhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHH
Confidence            8999999998  4445688888877774 888888888766              5677766653 6788776543321 


Q ss_pred             ------CCCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 007805          452 ------VMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (589)
Q Consensus       452 ------~~~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d  488 (589)
                            ...+..+++++  +++.++.+.++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                  22355566664  689999999999999 999999876

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.37  E-value=2.2e-12  Score=131.12  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=107.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ++++++..+...++++.+++.. +-+|.|.-.++++. |....+.          .........+ ..+..+++|+|++|
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV  219 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV  219 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            6899999999999999888664 44566644333322 2221110          0112233444 56889999999999


Q ss_pred             CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      +|.|.|||+.++++||+++|.++++|++      +.|.++++.++++..+...|.++    ..++|++|+++|+||+|+|
T Consensus       220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence            9999999999999999999999999996      46778888877877788888887    6799999999999999998


Q ss_pred             c
Q 007805          186 S  186 (589)
Q Consensus       186 ~  186 (589)
                      .
T Consensus       290 e  290 (339)
T 2f9y_A          290 E  290 (339)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.35  E-value=3.2e-12  Score=125.68  Aligned_cols=166  Identities=13%  Similarity=0.078  Sum_probs=102.8

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-HHHH-HHHHHHH-HHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKG-IKTIEAN-VRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      ...+||+|||+|.||.+||..|+++|++|++||+++++ +.+. .....+. +..+.+.           .+.....+..
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~   85 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-----------HPHVHLAAFA   85 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG-----------STTCEEEEHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-----------cCceeccCHH
Confidence            34578999999999999999999999999999999886 1110 0000000 0011111           1122222323


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHH-HHhCCCCcEEEecCCCC----------------CH-HHHhcccCCCCcEEEe
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DL-NIVGEKTSSQDRIIGA  444 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts~~----------------~~-~~~~~~~~~~~r~ig~  444 (589)
                      +++++||+||+|||.+.  ..+++.++ .+.+ ++++|++.+.++                .+ +.+++.++. .+++..
T Consensus        86 e~~~~aDvVilavp~~~--~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~  161 (245)
T 3dtt_A           86 DVAAGAELVVNATEGAS--SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKT  161 (245)
T ss_dssp             HHHHHCSEEEECSCGGG--HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEEC
T ss_pred             HHHhcCCEEEEccCcHH--HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEe
Confidence            67789999999999554  34666777 6666 778887776322                22 345555543 466554


Q ss_pred             cCCCCC---------CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCee-EEEcC
Q 007805          445 HFFSPA---------HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVP-VVVGN  488 (589)
Q Consensus       445 h~~~p~---------~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~-v~v~d  488 (589)
                      .++.+.         ...++..++.+.  ++++.+.++++++.+|+.+ +++++
T Consensus       162 ~~~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          162 LNTMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             STTSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             ecccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            433222         122333344443  7899999999999999864 67765

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.34  E-value=2.9e-12  Score=137.92  Aligned_cols=192  Identities=13%  Similarity=0.062  Sum_probs=128.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~--  386 (589)
                      +|+|||+|.||+++|..|+++|++|++||+++++++...+..          |... .     -..+..++++ +.++  
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------g~~~-~-----~~~i~~~~~~~e~v~~l   66 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----------ASAP-F-----AGNLKAFETMEAFAASL   66 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TTST-T-----GGGEEECSCHHHHHHHB
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------CCCC-C-----CCCeEEECCHHHHHhcc
Confidence            799999999999999999999999999999999887653311          1100 0     0124555666 3344  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                       ++|+||+|||....+ .++++++.+.++++++|++.+++.+.  ..+.+.+. ...++++.....++   ..++  .++
T Consensus        67 ~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i~  143 (478)
T 1pgj_A           67 KKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AFF  143 (478)
T ss_dssp             CSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EEE
T ss_pred             cCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eEe
Confidence             599999999975443 45668899999999988877666543  23444443 23345554322211   1122  133


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCC----ccccccc---HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805          460 RTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~~G----fi~nRi~---~~~~~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      .+.  +++..+.++++++.+|..       ++++++ ..|    ++.|.+.   ..+++|++.+.+. |++++++..++
T Consensus       144 ~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~  220 (478)
T 1pgj_A          144 PGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL  220 (478)
T ss_dssp             EEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            332  688999999999999987       555543 222    2346543   3567899988765 89999988877

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.33  E-value=2.1e-12  Score=123.83  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      ..++|+|||+|.||+++|..|+++|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            357899999999999999999999999999998754                                         367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC---------------HHHHhcccCCCCcEEE-ecCCCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPA  450 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~---------------~~~~~~~~~~~~r~ig-~h~~~p~  450 (589)
                      +||+||+|+|  ....++++.++.+.++ ++++++.+++++               .+.+++.++ ..+++. .|+...|
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999999  5556788889888888 888888877665               344555554 357777 6654322


Q ss_pred             CC--------CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          451 HV--------MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       451 ~~--------~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                      ..        .+...++.+  .+++..+.+.++++.+|.+++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            11        112223333  4688999999999999999998876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.32  E-value=1.4e-12  Score=136.14  Aligned_cols=199  Identities=14%  Similarity=0.055  Sum_probs=122.5

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      |.|+||+|||+|.||+++|..|+++|++|++||+++++++...+...+.  ... .+.       .....+..++++ ++
T Consensus        13 m~M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~--~~~-~~~-------~~~~~~~~~~~~~~~   82 (366)
T 1evy_A           13 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENV--LFL-KGV-------QLASNITFTSDVEKA   82 (366)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCT--TTS-TTC-------BCCTTEEEESCHHHH
T ss_pred             hccCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccc-ccc-------ccccceeeeCCHHHH
Confidence            3355899999999999999999999999999999998877653210000  000 000       000134555666 56


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHH----HHHhCCC-CcEEEecCCCCCHHH---HhcccCC--CC--cEEEecCCCCCC-
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD--RIIGAHFFSPAH-  451 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~----l~~~~~~-~~ii~s~ts~~~~~~---~~~~~~~--~~--r~ig~h~~~p~~-  451 (589)
                      ++++|+||+|||  .....+++.+    +.+++++ +++|++.++++.+..   +.+.+..  +.  ..+...|..+.. 
T Consensus        83 ~~~aDvVilav~--~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~  160 (366)
T 1evy_A           83 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV  160 (366)
T ss_dssp             HTTCSSEEECCC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH
T ss_pred             HcCCCEEEECCC--hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH
Confidence            789999999999  4567788888    9888888 888888887765531   1111111  11  111112221110 


Q ss_pred             -CCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCCC----------------------ccccc---ccHHHHH
Q 007805          452 -VMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCTG----------------------FAVNR---AFFPYSQ  503 (589)
Q Consensus       452 -~~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~~G----------------------fi~nR---i~~~~~~  503 (589)
                       ......++.+ ..+++..+.+.++++..  |..+++..|..|                      +..|.   +....++
T Consensus       161 ~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~  239 (366)
T 1evy_A          161 ATGVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLL  239 (366)
T ss_dssp             HTTCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhCCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHH
Confidence             1111112222 23678899999999999  887777666432                      12232   2345667


Q ss_pred             HHHHHHHc-CCCHHH
Q 007805          504 SARLLVSL-GVDVFR  517 (589)
Q Consensus       504 Ea~~l~~~-Gv~~~~  517 (589)
                      |++.+.+. |+++++
T Consensus       240 E~~~la~a~Gi~~~~  254 (366)
T 1evy_A          240 EIRDLTAALGGDGSA  254 (366)
T ss_dssp             HHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHhCCCCcc
Confidence            99988865 886644

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.31  E-value=2.9e-12  Score=138.30  Aligned_cols=190  Identities=13%  Similarity=0.065  Sum_probs=128.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC--
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF--  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~--  385 (589)
                      ++|+|||+|.||+++|..|+++|++|++||+++++++...+.        ...|           ..+..++++ +.+  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~--------~~~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN--------EAKG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT--------TTTT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc--------cccC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999987765320        0001           124455566 333  


Q ss_pred             -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCCC---CCCeeeE
Q 007805          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  458 (589)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~~---~~~lvei  458 (589)
                       +++|+||+|||....+ ..++.++.+.++++++|++.+++.+.+  .+.+.+. ...+++++..+.++.   ..+  .+
T Consensus        64 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             5899999999965444 456688999999999888776666543  3443332 234566543222211   112  13


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-CCC----ccccccc---HHHHHHHHHHHHc--CCCHHHHHHH
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  521 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d-~~G----fi~nRi~---~~~~~Ea~~l~~~--Gv~~~~iD~~  521 (589)
                      +.+.  +++..+.++++++.+|.++       +++++ ..|    ++.|.+.   ...++|++.+.+.  |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            3332  5778899999999999876       44432 222    3446554   4567899988865  8899998887


Q ss_pred             H
Q 007805          522 I  522 (589)
Q Consensus       522 ~  522 (589)
                      +
T Consensus       219 ~  219 (482)
T 2pgd_A          219 F  219 (482)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.30  E-value=1.7e-12  Score=125.00  Aligned_cols=148  Identities=13%  Similarity=0.098  Sum_probs=101.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .++||+|||+|.||..+|..|++.|++|+++|+++++.+...           +.|             +... +. +.+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~-~~~~~~   81 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVT-FQEEAV   81 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEE-EHHHHT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------Ccee-cHHHHH
Confidence            457899999999999999999999999999999988765531           111             2222 33 567


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh----------cccCCCCcEEEecCCCCCC----
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGAHFFSPAH----  451 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~----------~~~~~~~r~ig~h~~~p~~----  451 (589)
                      +++|+||+|+|.+  ....++. +.+.. ++++|++.+++.+.+.+.          +.++ ..++++..  |+..    
T Consensus        82 ~~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~--n~~~~~~~  154 (215)
T 2vns_A           82 SSPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAF--NVISAWTL  154 (215)
T ss_dssp             TSCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEEC--TTBCHHHH
T ss_pred             hCCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEecc--ccccHhHh
Confidence            8999999999853  3445554 55566 788999999888765542          3333 23555431  2211    


Q ss_pred             -----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          452 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       452 -----~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                           ..+...++.+  .+++.++.++++++.+|++++++++
T Consensus       155 ~~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          155 QAGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             HTCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             cccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence                 1111112222  3799999999999999999999876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.30  E-value=1.8e-11  Score=128.79  Aligned_cols=199  Identities=18%  Similarity=0.164  Sum_probs=127.4

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      .|.+|+|||+|.+|..+|.+|++.||+|+++|+|+++++...+.        +...+.+.++            -+++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence            57899999999999999999999999999999999998875321        1111111122            246788


Q ss_pred             cCCc-cCCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCC---CCcEEEecCCCCCHH---H-----HhcccCCC
Q 007805          379 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLN---I-----VGEKTSSQ  438 (589)
Q Consensus       379 ~~~~-~~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~---~~~ii~s~ts~~~~~---~-----~~~~~~~~  438 (589)
                      +++. +++++||++|+|||.        |+.......+.|.++++   ++++|+. .||+++.   +     +.+.....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~  166 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV  166 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence            8888 678999999999985        44556667777777764   3455543 3333321   1     11111111


Q ss_pred             CcEEEecCCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc----CCCCccccccc---HHHH
Q 007805          439 DRIIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVG----NCTGFAVNRAF---FPYS  502 (589)
Q Consensus       439 ~r~ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~----d~~Gfi~nRi~---~~~~  502 (589)
                      .-.++.   +|-...+.-         -++.| .+++++.+.+.++++.+....+++.    |...++.|-..   .+++
T Consensus       167 ~f~v~~---~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~  242 (444)
T 3vtf_A          167 KFSVAS---NPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA  242 (444)
T ss_dssp             CCEEEE---CCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceeec---CcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence            112222   222211110         13322 2467888899999998877665542    22234556553   5788


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH
Q 007805          503 QSARLLVSL-GVDVFRIDSAI  522 (589)
Q Consensus       503 ~Ea~~l~~~-Gv~~~~iD~~~  522 (589)
                      ||...+.+. |+++.++=.++
T Consensus       243 NEla~ice~~GiDv~eV~~a~  263 (444)
T 3vtf_A          243 NEVGLLAKRLGVDTYRVFEAV  263 (444)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHh
Confidence            998888876 99998887776

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.28  E-value=5.4e-12  Score=129.18  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=89.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||.++|..++..|+ +|++||+++++++.....+.+......            ...+++.++|++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIG------------SPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHT------------CCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccC------------CCCEEEECCCHHHHCC
Confidence            589999999999999999999999 999999999988864333333322110            1245777788888999


Q ss_pred             CCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEE--EecCCCCCHHHHhcccC--CCCcEEEe
Q 007805          388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA  444 (589)
Q Consensus       388 aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~--~~~r~ig~  444 (589)
                      ||+||+++  |+            +..+++++++++.+++ |++++  +||++... +.+.....  .|.|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  65            4567999999999998 56655  46655533 33332222  46677774

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.26  E-value=4.5e-12  Score=131.59  Aligned_cols=199  Identities=16%  Similarity=0.030  Sum_probs=124.9

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCC-------CeEEEEeCChH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHh
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNAL  373 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  373 (589)
                      |.++||+|||+|.||+++|..|+++|       ++|++||++++     ..+...+...+  .... .+.       ...
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~~-~~~-------~~~   75 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN--VKYL-PGH-------KLP   75 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC--TTTS-TTC-------CCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc--cccC-Ccc-------cCc
Confidence            34568999999999999999999999       99999999987     65543211000  0000 000       001


Q ss_pred             hcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--------HH-HhcccCCCCcEEE
Q 007805          374 KMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NI-VGEKTSSQDRIIG  443 (589)
Q Consensus       374 ~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--------~~-~~~~~~~~~r~ig  443 (589)
                      ..+..++++ +++++||+||+|||+  ....+++.++.++++++++|++.++++.+        .+ +...++.+ ..+.
T Consensus        76 ~~~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~  152 (354)
T 1x0v_A           76 PNVVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVL  152 (354)
T ss_dssp             TTEEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEE
T ss_pred             cCeEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEE
Confidence            234555666 567899999999995  56788999999999999999998887653        11 12222211 1222


Q ss_pred             ecCCCCCC--CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------ccccc---
Q 007805          444 AHFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNR---  496 (589)
Q Consensus       444 ~h~~~p~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nR---  496 (589)
                      ..|..+..  ......++.+ ..+++..+.+.++++..|..+++..|..|                      +..|-   
T Consensus       153 ~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~  231 (354)
T 1x0v_A          153 MGANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAA  231 (354)
T ss_dssp             ECSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ECCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHH
Confidence            22322211  0111122222 24688899999999999998888776433                      11231   


Q ss_pred             ccHHHHHHHHHHHHc-CC---CHHHH
Q 007805          497 AFFPYSQSARLLVSL-GV---DVFRI  518 (589)
Q Consensus       497 i~~~~~~Ea~~l~~~-Gv---~~~~i  518 (589)
                      +....++|+.++.+. |+   +++++
T Consensus       232 ~~~~~~~E~~~la~a~G~~~~~~~~~  257 (354)
T 1x0v_A          232 VIRLGLMEMIAFAKLFCSGPVSSATF  257 (354)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccc
Confidence            234556788888866 87   77553

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.26  E-value=2.4e-12  Score=134.53  Aligned_cols=154  Identities=11%  Similarity=0.063  Sum_probs=110.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC------CCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      ++||+|||+|+||.++|..|.++      |++|++.+++.+ ..+.+           .+.|....         -....
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~---------d~ta~  113 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE---------SGTLG  113 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT---------TTCEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe---------cCCCC
Confidence            37899999999999999999999      999987766533 33332           12221100         00012


Q ss_pred             Cc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhc---ccCCCCcEEEecCCCCCCC----
Q 007805          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV----  452 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~~~r~ig~h~~~p~~~----  452 (589)
                      +. +++++||+||+++|.  ....+++.+|.++++++++| +.+.++.+..+..   ..+....++..||..|.+.    
T Consensus       114 s~aEAa~~ADVVILaVP~--~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~  190 (525)
T 3fr7_A          114 DIWETVSGSDLVLLLISD--AAQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL  190 (525)
T ss_dssp             EHHHHHHHCSEEEECSCH--HHHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred             CHHHHHhcCCEEEECCCh--HHHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence            33 678999999999994  43457889999999999985 7888888877664   3334457999999998875    


Q ss_pred             ---C-----Cee--eEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 007805          453 ---M-----PLL--EIVRTERTSAQVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       453 ---~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lG~~~v  484 (589)
                         +     ..+  -+..+...+.+..+.+..++..+|...+
T Consensus       191 y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          191 YVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             HhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence               1     112  2334445677889999999999998753

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.24  E-value=1e-11  Score=139.28  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             ccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCC--CCCchHHH
Q 007805          493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPD--RSFQSPLV  564 (589)
Q Consensus       493 i~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~--~~~~~~~l  564 (589)
                      |..|++++++||+.+++++||  ++.|||.++ .|+|||.   |||+|+|.+|++.+++.++.+++.+|+  ++.|+++|
T Consensus       638 i~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L  717 (742)
T 3zwc_A          638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYL  717 (742)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHH
Confidence            789999999999999999998  899999999 9999997   999999999999999999999999997  46699999


Q ss_pred             HHHHHcCCCCc---ccceeeCC
Q 007805          565 DLLLKSGRNGN---KGFSFLFV  583 (589)
Q Consensus       565 ~~~v~~g~~G~---~Gfy~y~~  583 (589)
                      ++|+++|....   +|||.|.+
T Consensus       718 ~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          718 RRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             HHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHcCCCcccccccccCCCC
Confidence            99999997766   77776654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.22  E-value=1.4e-11  Score=125.71  Aligned_cols=123  Identities=20%  Similarity=0.303  Sum_probs=88.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      ++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+...+....            ...+++.++|+++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~   71 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY------------SNCKVSGSNTYDDLA   71 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT------------CCCCEEEECCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC------------CCcEEEECCCHHHhC
Confidence            4689999999999999999999998 999999999888764444433322110            113567778888899


Q ss_pred             CCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCcEE--EecCCCCCHHHHhcccC--CCCcEEE
Q 007805          387 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIG  443 (589)
Q Consensus       387 ~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~--~~~r~ig  443 (589)
                      +||+||+++  |+++                 .+++++++++.+++ |++++  +||++.+. +.+.....  .+.|++|
T Consensus        72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG  149 (322)
T 1t2d_A           72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG  149 (322)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred             CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence            999999998  7543                 37889999999998 66655  46655543 33332222  4567777


Q ss_pred             e
Q 007805          444 A  444 (589)
Q Consensus       444 ~  444 (589)
                      +
T Consensus       150 ~  150 (322)
T 1t2d_A          150 L  150 (322)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.21  E-value=3.7e-11  Score=126.64  Aligned_cols=199  Identities=17%  Similarity=0.170  Sum_probs=123.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcC-CCCHHHHHHHh----hcccccCCc-
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNAL----KMLKGVLDY-  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~----~~i~~~~~~-  382 (589)
                      +||+|||+|.||.++|..|++ |++|++||+++++++...+           .+ .+.....+..+    .++.+++++ 
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            379999999999999999999 9999999999998776422           11 11111111111    245667776 


Q ss_pred             cCCCCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCcEEEe-cCCCCCH-HHHhcccCCCCcEEEecC--CCC
Q 007805          383 SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAHF--FSP  449 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s-~ts~~~~-~~~~~~~~~~~r~ig~h~--~~p  449 (589)
                      +++++||+||+|||...         ....++++++.+ ++++++|+. +|.+... ..+...+...  .+...|  ..|
T Consensus        69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~  145 (402)
T 1dlj_A           69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRE  145 (402)
T ss_dssp             HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCT
T ss_pred             HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccC
Confidence            66889999999999763         146777888888 888888775 3333332 3454444332  223222  111


Q ss_pred             CCCC-Cee---eEecCCCCC-----HHHHHHHHHHHHHcCC--e-eEEEcCCC-----Cccccccc---HHHHHHHHHHH
Q 007805          450 AHVM-PLL---EIVRTERTS-----AQVILDLMTVGKIIKK--V-PVVVGNCT-----GFAVNRAF---FPYSQSARLLV  509 (589)
Q Consensus       450 ~~~~-~lv---eiv~~~~t~-----~e~~~~~~~l~~~lG~--~-~v~v~d~~-----Gfi~nRi~---~~~~~Ea~~l~  509 (589)
                      .... ...   .++.|....     .+..+.+.+++...+.  . ++++.+..     .++.|-+.   .+++||+..+.
T Consensus       146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~  225 (402)
T 1dlj_A          146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA  225 (402)
T ss_dssp             TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1100 000   133332221     1556777787865332  2 56665532     24445543   46789999888


Q ss_pred             Hc-CCCHHHHHHHH
Q 007805          510 SL-GVDVFRIDSAI  522 (589)
Q Consensus       510 ~~-Gv~~~~iD~~~  522 (589)
                      +. |++++++-.++
T Consensus       226 ~~~Gid~~~v~~~~  239 (402)
T 1dlj_A          226 ESRKLNSHMIIQGI  239 (402)
T ss_dssp             HHTTCCHHHHHHHH
T ss_pred             HHhCCCHHHHHHHh
Confidence            76 99999988887

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.21  E-value=1.2e-11  Score=129.39  Aligned_cols=197  Identities=11%  Similarity=-0.015  Sum_probs=123.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC-------CeEEEEeCChH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  375 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  375 (589)
                      ++||+|||+|.||++||..|+++|       ++|++||++++     .++...+.        .......+.  ......
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~--~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK--------HENTKYLKG--VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH--------CBCTTTSTT--CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc--------CcccccCCc--ccCcCC
Confidence            468999999999999999999999       99999999987     55443211        000000000  000123


Q ss_pred             ccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHH----hCCCCcEEEecCCCCCHH-----HH----hcccCCCCcE
Q 007805          376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDLN-----IV----GEKTSSQDRI  441 (589)
Q Consensus       376 i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~----~~~~~~ii~s~ts~~~~~-----~~----~~~~~~~~r~  441 (589)
                      +..++++ +++++||+||+|||  .....+++.++.+    .++++++|++.++++.+.     .+    ....+.+ ..
T Consensus        91 i~~~~~~~ea~~~aDvVilav~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVP--CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCC--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred             eEEECCHHHHHcCCCEEEEcCC--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence            5566666 56889999999999  4678889999988    899999999988776541     11    2222211 11


Q ss_pred             EEecCCCCCC--CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc
Q 007805          442 IGAHFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA  497 (589)
Q Consensus       442 ig~h~~~p~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi  497 (589)
                      +...|..+..  ......++.+ ..+++..+.+.++++..|..+++..|..|                      +..|..
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~  246 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSK  246 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Confidence            1222221110  0111122222 23678899999999999999888887643                      222322


Q ss_pred             ---cHHHHHHHHHHHHc---CCCHHHH
Q 007805          498 ---FFPYSQSARLLVSL---GVDVFRI  518 (589)
Q Consensus       498 ---~~~~~~Ea~~l~~~---Gv~~~~i  518 (589)
                         ....++|+..+.+.   |++++++
T Consensus       247 ~a~~~~~~~E~~~la~a~G~G~~~~~~  273 (375)
T 1yj8_A          247 SAIIRNGINEMILFGKVFFQKFNENIL  273 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcchh
Confidence               34455688877754   4766544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.20  E-value=6.5e-12  Score=126.42  Aligned_cols=163  Identities=12%  Similarity=-0.019  Sum_probs=104.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+++|..|+++|++|++||+++++++..           ...+... .   .....+. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~-~---~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG-S---IFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS-C---EEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC-c---eeeeeee-ecCccccCCC
Confidence            379999999999999999999999999999998654321           1111000 0   0000111 2334667889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEE-EecCC-----CC-C-CCC-CeeeE
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFF-----SP-A-HVM-PLLEI  458 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~i-g~h~~-----~p-~-~~~-~lvei  458 (589)
                      |+||.|+|.+.  ..++++++.+.++++++|++.++++... .+.+.++  . ++ |.+++     .| + ... ..+.+
T Consensus        65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~~~i  139 (291)
T 1ks9_A           65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGITHI  139 (291)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCCEEE
T ss_pred             CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccceEE
Confidence            99999999653  5788899999999999888887777553 4444433  2 44 33322     22 0 000 01112


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcc
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFA  493 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi  493 (589)
                      .+. ..+++.++.+.++++.+|..+++.+|..+..
T Consensus       140 ~~~-~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~  173 (291)
T 1ks9_A          140 GPA-RQQDGDYSYLADILQTVLPDVAWHNNIRAEL  173 (291)
T ss_dssp             EES-SGGGTTCTHHHHHHHTTSSCEEECTTHHHHH
T ss_pred             ccC-CCCcchHHHHHHHHHhcCCCCeecHHHHHHH
Confidence            221 1345677889999999999988887744433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.19  E-value=6.4e-11  Score=121.75  Aligned_cols=191  Identities=14%  Similarity=0.054  Sum_probs=120.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccC--Cc-c
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-S  383 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-~  383 (589)
                      ||+|||+|.||+++|..|+++|++|++||+  ++++++...           +.|. +... .  .+..+..++  ++ +
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~g-~--~~~~~~~~~~~~~~~   67 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRLG-V--KLNGVEIFWPEQLEK   67 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTTT-B--CCCSEEEECGGGHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCcccC-c--cccceEEecHHhHHH
Confidence            799999999999999999999999999999  888776532           1221 0000 0  001223444  55 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC---C---HHHHhcccCC--CCcEEEecCCCCCCC---
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAHV---  452 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~---~---~~~~~~~~~~--~~r~ig~h~~~p~~~---  452 (589)
                      .++++|+||.|+|.+  ...+++.++.+ ++++++|++.+.++   +   ...+.+.+..  +..........|...   
T Consensus        68 ~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~  144 (335)
T 1txg_A           68 CLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV  144 (335)
T ss_dssp             HHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred             HHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence            578999999999854  56788899998 98899888877666   2   2344443332  110001111222211   


Q ss_pred             --CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cc-----ccc---ccHH
Q 007805          453 --MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FA-----VNR---AFFP  500 (589)
Q Consensus       453 --~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi-----~nR---i~~~  500 (589)
                        .....++.+. .+++..+.+.++++..|..+++..|..+                      +.     .|-   +...
T Consensus       145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~  223 (335)
T 1txg_A          145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATR  223 (335)
T ss_dssp             HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence              1111233332 3688899999999999988887776422                      11     222   2345


Q ss_pred             HHHHHHHHHHc-CCCHHHH
Q 007805          501 YSQSARLLVSL-GVDVFRI  518 (589)
Q Consensus       501 ~~~Ea~~l~~~-Gv~~~~i  518 (589)
                      .++|+..+.+. |++++++
T Consensus       224 ~~~E~~~la~~~G~~~~~~  242 (335)
T 1txg_A          224 AINEMAELIEILGGDRETA  242 (335)
T ss_dssp             HHHHHHHHHHHHTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCcchh
Confidence            56798888865 8876544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.18  E-value=6.5e-11  Score=121.91  Aligned_cols=187  Identities=12%  Similarity=-0.012  Sum_probs=112.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      .||+|||+|.||+.||..|+++|++|++||+++++++...+           .|... ......+ .+..+++.+.++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~-~~~~~~~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSP-YVEESKI-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBT-TBTTCCC-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcc-cCCCCee-eEEEeCCHHHhcCC
Confidence            57999999999999999999999999999999988766422           11000 0000000 24556666338899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH---Hhc----ccCCCCcEEEecCCCCCC--CCCeeeEe
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGE----KTSSQDRIIGAHFFSPAH--VMPLLEIV  459 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~---~~~----~~~~~~r~ig~h~~~p~~--~~~lveiv  459 (589)
                      |+||.|||.  ....+++.++.+   +++++++.+.++....   +++    ... ....+...|..+..  ......++
T Consensus        82 DvVil~vk~--~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~  155 (335)
T 1z82_A           82 DILVIAIPV--QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEVAKKLPTAVT  155 (335)
T ss_dssp             EEEEECSCG--GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHHHTTCCEEEE
T ss_pred             CEEEEECCH--HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHHhCCCceEEE
Confidence            999999983  445566655544   6778887776655421   111    111 11122222322211  11112222


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccc---cccHHHHHHHHHHHHc-CC
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVN---RAFFPYSQSARLLVSL-GV  513 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~n---Ri~~~~~~Ea~~l~~~-Gv  513 (589)
                      .+.. +   .+.+.++++..|..+.+..|..|                      +..|   .+....+.|+..+.+. |+
T Consensus       156 ~g~~-~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~  231 (335)
T 1z82_A          156 LAGE-N---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGA  231 (335)
T ss_dssp             EEET-T---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeh-h---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence            2211 2   67889999999988877766432                      1122   2334566799888865 99


Q ss_pred             CHHHH
Q 007805          514 DVFRI  518 (589)
Q Consensus       514 ~~~~i  518 (589)
                      +++++
T Consensus       232 ~~~~~  236 (335)
T 1z82_A          232 DQKTF  236 (335)
T ss_dssp             CHHHH
T ss_pred             Chhhh
Confidence            88765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.17  E-value=2.6e-11  Score=124.27  Aligned_cols=122  Identities=21%  Similarity=0.282  Sum_probs=88.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-CCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  386 (589)
                      +||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+.....   +         ...+++.++|++ +++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~~   77 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAALT   77 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHhC
Confidence            589999999999999999999998 99999999988887544444333211   1         113577778885 899


Q ss_pred             CCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCcEE--EecCCCCCHHHHh-cccC-CCCcEEE
Q 007805          387 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVG-EKTS-SQDRIIG  443 (589)
Q Consensus       387 ~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~-~~~~-~~~r~ig  443 (589)
                      +||+||+++  |+++                 .+++++++++.+++ |++++  +||++++. +.+. .... .+.|++|
T Consensus        78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rviG  155 (331)
T 1pzg_A           78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMICG  155 (331)
T ss_dssp             TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred             CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEEe
Confidence            999999999  7654                 34889999999998 66665  46655543 3333 2222 4667777


Q ss_pred             e
Q 007805          444 A  444 (589)
Q Consensus       444 ~  444 (589)
                      +
T Consensus       156 ~  156 (331)
T 1pzg_A          156 M  156 (331)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.17  E-value=8e-12  Score=132.37  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=74.8

Q ss_pred             CCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCC--CCch
Q 007805          490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQS  561 (589)
Q Consensus       490 ~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~  561 (589)
                      ...+.+|++++++||+.+++++||  +++|||.++ .|+|||.   |||+|+|.+|++.+...++.|++.+|++  +.|+
T Consensus       355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~  434 (460)
T 3k6j_A          355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVA  434 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            346889999999999999999998  699999999 9999997   9999999999999999999999999998  6799


Q ss_pred             HHHHHHHHcCCCCc
Q 007805          562 PLVDLLLKSGRNGN  575 (589)
Q Consensus       562 ~~l~~~v~~g~~G~  575 (589)
                      ++|++|+++|++|.
T Consensus       435 ~~L~~~a~~g~~~~  448 (460)
T 3k6j_A          435 DALKTANVSTGSSG  448 (460)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999999998

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.14  E-value=1.5e-10  Score=118.28  Aligned_cols=174  Identities=14%  Similarity=0.089  Sum_probs=115.2

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .++||+|||+|.||+.+|..|+++|++|++| ++++.++...+.-   +  .......      .....+..+++.+.++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g---~--~~~~~~~------~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATG---L--RLETQSF------DEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHC---E--EEECSSC------EEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCC---e--EEEcCCC------cEEEeeeeeCCHHHcC
Confidence            4678999999999999999999999999999 9988877653210   0  0000000      0012345566776778


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEec------CCCCCCC---CCee
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH------FFSPAHV---MPLL  456 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h------~~~p~~~---~~lv  456 (589)
                      ++|+||+|||..  ...++++++.++++++++|++.++++.. +.+.+.++  .++++..      ...|-..   ... 
T Consensus        86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g-  160 (318)
T 3hwr_A           86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG-  160 (318)
T ss_dssp             TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-
T ss_pred             CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-
Confidence            999999999954  4678899999999999999999999987 45555554  4444321      1122111   111 


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHH
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~  500 (589)
                      .++-+.   .+..+.+.+++...|..+.+..|..|.....++.+
T Consensus       161 ~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N  201 (318)
T 3hwr_A          161 ELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILN  201 (318)
T ss_dssp             EEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             eEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHH
Confidence            122222   23456788889999988888788776555554443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.13  E-value=5.8e-11  Score=121.06  Aligned_cols=166  Identities=10%  Similarity=-0.012  Sum_probs=104.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-----C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHHhhcccccC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVL  380 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~  380 (589)
                      ++||+|||+|.||+.+|..|+++     | ++|++||+ +++++...+.          .|..... .-......+..++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~   76 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTD   76 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEec
Confidence            35899999999999999999999     9 99999999 7665553210          1110000 0000000122334


Q ss_pred             CccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEecCCCCCCC-------
Q 007805          381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHV-------  452 (589)
Q Consensus       381 ~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h~~~p~~~-------  452 (589)
                      +.+.++++|+||.|||...  ..+++.++.+.++++++|++.+.++.. +.+.+.++.. +++...++.+...       
T Consensus        77 ~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~  153 (317)
T 2qyt_A           77 NPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLIT  153 (317)
T ss_dssp             CHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEE
T ss_pred             CccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEE
Confidence            4456789999999998654  467888999988888888887778776 4555555432 3322222211111       


Q ss_pred             --CCeeeE-ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          453 --MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       453 --~~lvei-v~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                        .....+ +..  ...+++.+ .+.++++..|..+.+..|
T Consensus       154 ~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d  193 (317)
T 2qyt_A          154 LEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD  193 (317)
T ss_dssp             EEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred             EcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence              111112 322  33457777 899999999988777665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.10  E-value=8.9e-11  Score=119.86  Aligned_cols=159  Identities=17%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..|+..|+  +|++||+++++++.....+..... ..  .          ..++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~--~----------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT--R----------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS--C----------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc--C----------CcEEEe-CCHHHhC
Confidence            479999999999999999999999  999999999887764333322211 00  0          023333 3567889


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCcEEE--ecCCCCCHHHHh-cccC-CCCcEEEecCCC
Q 007805          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVG-EKTS-SQDRIIGAHFFS  448 (589)
Q Consensus       387 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~-~~~~-~~~r~ig~h~~~  448 (589)
                      +||+||+|+|..              ..+++++++++.+++ ++++++  ||.+... +.+. .... .+.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999852              245788889999987 555543  4443332 2333 2222 46677775    


Q ss_pred             CCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccc---cccHHHHHH
Q 007805          449 PAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN---RAFFPYSQS  504 (589)
Q Consensus       449 p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~n---Ri~~~~~~E  504 (589)
                                    .|..+.......+.+.+|..+   ++.++++.+   ..+++++++
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G~hg~~~~p~~s~  182 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIGEHGDSEVPVWSG  182 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEBCSSTTCEECGGG
T ss_pred             --------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEeCCCCCcccchhh
Confidence                          356666666667778888654   566677776   555555544

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.69  E-value=8.5e-12  Score=118.62  Aligned_cols=149  Identities=14%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      .++|+|||+|.||..+|..|.+.|++|++||++++ .+..           ...|             +...+..+.+++
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g-------------~~~~~~~~~~~~   73 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSL-----------LPRG-------------AEVLCYSEAASR   73 (201)
Confidence            35799999999999999999999999999999876 3221           0111             122222266789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--------HHHhcccCCCCcEEEecCCCCCCCCC-ee--
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL--  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--------~~~~~~~~~~~r~ig~h~~~p~~~~~-lv--  456 (589)
                      +|+||.|+|.+ . ...++ ++.+ ..++++|++.+++++.        +.+.+.++. .+++...++.|..... ..  
T Consensus        74 aDvVilav~~~-~-~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~  148 (201)
T 2yjz_A           74 SDVIVLAVHRE-H-YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD  148 (201)
Confidence            99999999854 2 34454 4544 3467788888877753        344443332 3566666655554332 11  


Q ss_pred             ----eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          457 ----EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       457 ----eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                          .++.+.  +++..+.+.++++.+|++++.+++
T Consensus       149 g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          149 ASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence                233332  578899999999999999998876

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.07  E-value=1.1e-10  Score=117.97  Aligned_cols=122  Identities=21%  Similarity=0.266  Sum_probs=82.6

Q ss_pred             CCCccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          304 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       304 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      ....++||+|||+|.||.++|..++..|+  +|+++|++++....+.+-. .     ..            ..+++.++|
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~-~-----~~------------~~~i~~t~d   71 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE-I-----FN------------LPNVEISKD   71 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH-H-----HT------------CTTEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh-h-----hc------------CCCeEEeCC
Confidence            34456899999999999999999999999  9999999986322332211 0     00            125666778


Q ss_pred             ccCCCCCCEEEEec-------------cCChHHHHHHHHHHHHhCCCCcEE--EecCCCCCHHHHhcccC-CCCcEEEe
Q 007805          382 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS-SQDRIIGA  444 (589)
Q Consensus       382 ~~~~~~aDlVIeav-------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~-~~~r~ig~  444 (589)
                      ++++++||+||+++             .++..+++++++++.+++ |++++  +||.+......+..... .+.|++|+
T Consensus        72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            88999999999997             889999999999999998 66665  46644322222222222 25677775

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.07  E-value=1.2e-10  Score=131.36  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             CCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHH
Q 007805          490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPL  563 (589)
Q Consensus       490 ~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  563 (589)
                      ++.|.+|++.+++||+.+++++||  +++|||.++ .|+|||.   |||+|+|.+|++.+++.++.+++.+|+++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~  703 (725)
T 2wtb_A          624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAF  703 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHH
Confidence            457889999999999999999997  999999999 8999998   9999999999999999999999999988789999


Q ss_pred             HHHHHHcCCCCccccee
Q 007805          564 VDLLLKSGRNGNKGFSF  580 (589)
Q Consensus       564 l~~~v~~g~~G~~Gfy~  580 (589)
                      |++|+++|    ++||.
T Consensus       704 l~~~~~~g----~~f~~  716 (725)
T 2wtb_A          704 LAERGSKG----VLLSA  716 (725)
T ss_dssp             HHHHHHHT----CCSSS
T ss_pred             HHHHHHcC----CCccc
Confidence            99999999    89985

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.06  E-value=1.4e-10  Score=130.66  Aligned_cols=86  Identities=15%  Similarity=0.257  Sum_probs=80.6

Q ss_pred             CCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHH
Q 007805          490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPL  563 (589)
Q Consensus       490 ~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  563 (589)
                      ++.|.+|++.+++||+.+++++||  +++|||.++ .|+|||.   |||+|+|.+|++.+++.++.+ +.+|+++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~  702 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAK  702 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHH
Confidence            457899999999999999999997  999999999 8999998   999999999999999999999 888977789999


Q ss_pred             HHHHHHcCCCCccccee
Q 007805          564 VDLLLKSGRNGNKGFSF  580 (589)
Q Consensus       564 l~~~v~~g~~G~~Gfy~  580 (589)
                      |.+|+++|    ++||.
T Consensus       703 l~~~~~~g----~~f~~  715 (715)
T 1wdk_A          703 LREMAKNG----QSFFG  715 (715)
T ss_dssp             HHHHHHTT----CCSCC
T ss_pred             HHHHHHcC----CCCCC
Confidence            99999999    88983

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.05  E-value=4.9e-10  Score=115.30  Aligned_cols=169  Identities=11%  Similarity=0.137  Sum_probs=106.4

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .++||+|||+|.||+.+|..|+++|++|++||++ +..+...           +.|.............+..+++.+.++
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~   69 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALG   69 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcC
Confidence            3578999999999999999999999999999995 4444321           122100000000001234456666678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC-------------------H-HHHhcccCCCCcEEEec-
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------L-NIVGEKTSSQDRIIGAH-  445 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-------------------~-~~~~~~~~~~~r~ig~h-  445 (589)
                      ++|+||+|||.  ....++++++.++++++++|++...+++                   . +.+.+.++ ..++++.. 
T Consensus        70 ~~D~Vilavk~--~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~  146 (335)
T 3ghy_A           70 EQDVVIVAVKA--PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVV  146 (335)
T ss_dssp             CCSEEEECCCH--HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEE
T ss_pred             CCCEEEEeCCc--hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEE
Confidence            99999999984  4566888889999999999998888853                   1 13444443 23444322 


Q ss_pred             C-----CCCCC---CCCeeeEecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 007805          446 F-----FSPAH---VMPLLEIVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (589)
Q Consensus       446 ~-----~~p~~---~~~lveiv~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G  491 (589)
                      +     ..|-.   .... .++-|  ...+.+..+.+.+++...|..+.+..|..+
T Consensus       147 ~~~a~~~~pg~v~~~~~g-~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          147 HLTCATVSPGHIRHGNGR-RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             CCCEEESSTTEEEECSCC-EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             EEEEEEcCCcEEEECCCC-eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence            1     11111   0011 12212  223457778899999999988887777665

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.01  E-value=1.7e-09  Score=110.08  Aligned_cols=173  Identities=12%  Similarity=0.027  Sum_probs=109.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...           +.|.. ........+..+..+++.+.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999986  23321           11210 00000000012334456666789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEecC------CCCCC---CCCe-e
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHF------FSPAH---VMPL-L  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h~------~~p~~---~~~l-v  456 (589)
                      +|+||.|||  .....++++++.++++++++|++...++.. +.+.+.++. .++++...      ..|-.   ..+. +
T Consensus        70 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLK--TFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCC--GGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecC--CCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998  444558899999999999999999999874 456555543 24444321      11211   1111 1


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccc
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi  497 (589)
                      .+-..+..+.+..+.+.+++...|..+.+..|.-+.....+
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl  187 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKL  187 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHH
Confidence            12222334567788899999999988877777654433333

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.99  E-value=1.1e-09  Score=104.20  Aligned_cols=143  Identities=19%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+.+.+.|..++.++.++.|+|.=.    |.|+++.                ....++ +.|..+++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~----------------a~~~I~-~~i~~~~~pV~~~v~   93 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSIS----------------AGMAIY-DTMVLAPCDIATYAM   93 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHCSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEC
Confidence            4788999999999999987777777777421    2222221                123455 678889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh------------------hhHhhhcC--HHHHHHHHH
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIEMML  164 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~~~~G--~~~a~~l~l  164 (589)
                      |.|.++|..++++||.  |++.+++.+++....-|.   .|-.                  ..+.+..|  .....+++.
T Consensus        94 g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~  170 (208)
T 2cby_A           94 GMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD  170 (208)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHh
Confidence            9999999999999998  999999999887654221   1110                  11333333  344667888


Q ss_pred             cCCCCCHHHHHHcCCcceecC-chHHHHHH
Q 007805          165 LSKSITSEEGWKLGLIDAVVT-SEELLKVS  193 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~-~~~l~~~a  193 (589)
                      .|+.++++||+++||||++.+ .+++++..
T Consensus       171 ~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          171 RDRWFTAAEALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             TTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred             CCcEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence            999999999999999999984 44555443

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.96  E-value=1.1e-09  Score=111.23  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=73.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.....            ......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            689999999999999999999997 999999999877642222211100            0001134666678888999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       388 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ||+||+++              .++..+++++++++.+++ |+++++
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi  116 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII  116 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence            99999997              344577888999999987 666653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.90  E-value=1.2e-09  Score=110.64  Aligned_cols=120  Identities=19%  Similarity=0.293  Sum_probs=79.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..++..|+  +|++||+++++++.....        +.... .   .. ...+++. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~-~---~~-~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA-P---VS-HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh-h---hc-CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  999999998766532111        11111 0   00 0012333 4668899


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEE--ecCCCCCHHHHhcccCCCCcEEEe
Q 007805          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~~~~r~ig~  444 (589)
                      +||+||+++  |.            +..+++++++++.+++ ++++++  ||.+......+.... .+.|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  43            3457789999999986 666553  555443333333333 56677774

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.89  E-value=3.3e-09  Score=108.31  Aligned_cols=166  Identities=15%  Similarity=0.100  Sum_probs=106.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhH---hcCCCCHHHHHHHhhcccccCCccCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV---TRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...+.   .+  .+   ..|...       +..+..+++.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~---Gl--~~~~~~~g~~~-------~~~~~~~~~~~~~   68 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK---GI--RIRSATLGDYT-------FRPAAVVRSAAEL   68 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH---CE--EEEETTTCCEE-------ECCSCEESCGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC---Cc--EEeecCCCcEE-------EeeeeeECCHHHc
Confidence            5899999999999999999999999999999862  322110   00  00   011100       0123445666444


Q ss_pred             -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEecCC------CCCCC---CC
Q 007805          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFF------SPAHV---MP  454 (589)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h~~------~p~~~---~~  454 (589)
                       +++|+||.|||...  ..++++++.++++++++|++...++.. +.+.+.++.. +++..-.+      .|-.+   .+
T Consensus        69 ~~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~  145 (320)
T 3i83_A           69 ETKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAY  145 (320)
T ss_dssp             SSCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCC
Confidence             49999999998554  347889999999999999998888864 5566665533 44443211      11111   11


Q ss_pred             eeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 007805          455 LLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (589)
Q Consensus       455 lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G  491 (589)
                      ....+ ..+..+.+..+.+.+++...|..+.+..|.-+
T Consensus       146 ~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~  183 (320)
T 3i83_A          146 GRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITT  183 (320)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHH
T ss_pred             CEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHH
Confidence            11111 11233456788899999999988877676554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.88  E-value=1.1e-09  Score=112.82  Aligned_cols=117  Identities=15%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||.++|..+. ..|++|++||++++..+.+.+           .|             +...+++ +.++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------LG-------------AERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------HT-------------CEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------cC-------------cEEeCCHHHHhc
Confidence            58999999999999999999 899999999998765443211           01             2233345 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCC-CcEEEecCCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP  449 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~-~r~ig~h~~~p  449 (589)
                      +||+|++++|...+.+.-+.+++.+.++++++|++.+++  .....+.+.+... ....+.++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987766555545667789999998765555  3345566655432 12357888873

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.86  E-value=2.6e-09  Score=109.43  Aligned_cols=118  Identities=13%  Similarity=0.051  Sum_probs=82.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||.++|..++..|++|++||+++++.+.+.           +.|             +... ++ +.++
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~  209 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAA  209 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHh
Confidence            36899999999999999999999999999999876544321           111             2223 44 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCC-CCcEEEecCCCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFSPA  450 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~-~~r~ig~h~~~p~  450 (589)
                      +||+|++++|...+.+.-+.+++.+.+++++++++.+++  .....+.+.+.. .....++++|.|.
T Consensus       210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            999999999987654444435667789999988765554  333555555432 3345678887653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.81  E-value=8.4e-09  Score=104.42  Aligned_cols=120  Identities=13%  Similarity=0.219  Sum_probs=80.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ||+|||+|.||.++|..++..|+ +|+++|+++++++.....+...... .  +         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE-L--G---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh-c--C---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999998888 7999999988876422222211100 0  0         01245666778899999


Q ss_pred             CEEEEe--------------ccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC-----CCCcEEEe
Q 007805          389 DMVIEA--------------VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-----SQDRIIGA  444 (589)
Q Consensus       389 DlVIea--------------vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-----~~~r~ig~  444 (589)
                      |+||++              +.++..+++++.+++.+++ |+++++..|  -|+..+.....     .+.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t--NPv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITT--NPVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeC--CchHHHHHHHHHhcCCChhhEEEe
Confidence            999999              4445667889999999997 666443222  25544433322     14466664

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.80  E-value=1.3e-08  Score=103.34  Aligned_cols=105  Identities=20%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      |.++||+|||+|.||.++|..++..|+ +|++||+++++++.....+.+... +...           ...+..++|+++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~~~-----------~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VDGF-----------DAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HHTC-----------CCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hcCC-----------CCEEEEeCCHHH
Confidence            456799999999999999999999999 999999999886543222222111 0000           124556678899


Q ss_pred             CCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          385 FKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       385 ~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +++||+||.+..  .            +..+.+++...+.+++ |+++++..|
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvt  124 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICIT  124 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecC
Confidence            999999999973  2            2345566667788887 666654333

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.78  E-value=2.9e-09  Score=109.20  Aligned_cols=115  Identities=16%  Similarity=0.058  Sum_probs=81.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||.++|..++..|++|++||++++. +.+.           +.|             +.. .++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            468999999999999999999999999999999876 3321           011             122 244 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccCC-CCcEEEecCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  448 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~-~~r~ig~h~~~  448 (589)
                      +||+|++++|...+.+.-+.+++.+.+++++++++.+.+..++  .+.+.+.. .-...+.++|+
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~  268 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFE  268 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCC
Confidence            9999999999877654433356677899999987666554443  45444432 23346788887

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.78  E-value=1.6e-08  Score=102.33  Aligned_cols=106  Identities=21%  Similarity=0.254  Sum_probs=71.8

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      .+..+||+|||+|.||.++|..++..|+ +|+++|+++  ++++.....+....            .......++..+++
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~d   72 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTSD   72 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEESC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcCC
Confidence            3456799999999999999999999999 999999994  44332211121110            00011235666778


Q ss_pred             ccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          382 YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       382 ~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++++++||+||+++.  .            +..+.+++.+.+.+++ |+++++..|
T Consensus        73 ~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvs  127 (315)
T 3tl2_A           73 YADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLT  127 (315)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECC
Confidence            899999999999972  2            2335567777788886 555554333

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.77  E-value=1.9e-08  Score=102.10  Aligned_cols=99  Identities=19%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (589)
                      |+||+|||+|.||.++|..|+.+|  ++|++||+++++++.....+.....   ..+           ..+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHH
Confidence            368999999999999999999999  7999999999887664332221110   000           11222 456688


Q ss_pred             CCCCCEEEEeccCCh------------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          385 FKDVDMVIEAVIESV------------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       385 ~~~aDlVIeavpe~~------------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +++||+||+|++...                  .+++++.+++.++++ +++++.
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~  120 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVV  120 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE
Confidence            999999999998533                  245788888888875 555543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.77  E-value=1.2e-08  Score=103.77  Aligned_cols=104  Identities=17%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      |.++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+... ..  +         ....+..++++++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~-~~--~---------~~~~v~~t~d~~a   70 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP-IE--G---------VDFKVRGTNDYKD   70 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH-HH--T---------CCCCEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh-hc--C---------CCcEEEEcCCHHH
Confidence            456799999999999999999999988 999999999876532222221100 00  0         0123455677899


Q ss_pred             CCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       385 ~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      +++||+||.+..-              +..+.+++.+.+.+++ |+++++..
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv  121 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICI  121 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe
Confidence            9999999998632              3355667777788888 56655433

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.76  E-value=3.2e-09  Score=108.70  Aligned_cols=113  Identities=18%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.+           .|             +... ++ +.+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC-------------ceec-CHHHHHhh
Confidence            58999999999999999999999999999999875 32210           01             1222 44 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccCC-CCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  448 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~-~~r~ig~h~~~  448 (589)
                      ||+|++++|.+.+.+.-+-+++.+.++++ ++++.+.+..++  .+.+.+.. .....|.++|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999987655544444566778889 776555544333  34444433 23457889887

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.75  E-value=3.3e-09  Score=108.35  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=80.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                |             .....++ +.+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5799999999999999999999999999999875311                1             1223455 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS  448 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~~  448 (589)
                      ||+|++++|...+.+.-+-++..+.+++++++++.+++..+  ..+.+.+.. ..+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999977655443334556678899998766665443  455555542 34567888876

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.75  E-value=1.1e-08  Score=103.78  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=75.7

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      +.+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.....    ..         ...++..++|+++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~----~~---------~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL----FL---------HTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG----GS---------CCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh----cc---------cCCeEEEcCCHHH
Confidence            56899999999999999999999997  999999999876654333332210    00         1235667788888


Q ss_pred             CCCCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          385 FKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       385 ~~~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      +++||+||++.              .++..+++++.+++.+++ |+++++..
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvv  137 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELH  137 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeC
Confidence            99999999874              335577888888999995 56655433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.74  E-value=1.2e-08  Score=107.74  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=75.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh-CCCeEEEEe---CChHHHHHHHHHHHHHHHhhHhcCC-CC----HHHHHHHhhccc-
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRGK-LT----QDKANNALKMLK-  377 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~-~G~~V~~~d---~~~~~~~~~~~~~~~~~~~~~~~g~-~~----~~~~~~~~~~i~-  377 (589)
                      ++||+|||+|.||+++|..|++ +|++|++||   +++++++.+.+          +.|. +.    +.+......++. 
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~   71 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQTEVKSRPKV   71 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEEEEEECCSE
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccceeeccceE
Confidence            3589999999999999999988 599999999   77776665311          1110 00    000000012333 


Q ss_pred             ccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC
Q 007805          378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (589)
Q Consensus       378 ~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (589)
                      .++++ ++++++|+||+|||...  ..++++++.++++++++|++++++..
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            55666 56889999999999554  67899999999999999998655444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.74  E-value=6.2e-09  Score=113.32  Aligned_cols=150  Identities=13%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||+++|..+...|++|++||++++. +.+.           +.|             +... ++ +.++
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~~~  195 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDLLA  195 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHHHh
Confidence            368999999999999999999999999999998642 2221           111             1122 44 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH--HhcccCCC------CcEEEecCC--CCCCCCCee
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQ------DRIIGAHFF--SPAHVMPLL  456 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~~~------~r~ig~h~~--~p~~~~~lv  456 (589)
                      +||+|+.|+|.....+.-+-+++.+.+++++++++.+++-.+++  +.+.+...      -.|++.||.  .|.+..+.+
T Consensus       196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~v  275 (529)
T 1ygy_A          196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV  275 (529)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTE
T ss_pred             cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCE
Confidence            99999999996644333222346778999999987776655443  43444321      123444552  222344566


Q ss_pred             eEecCCC-CCHHHHHH-----HHHHHHHcCCee
Q 007805          457 EIVRTER-TSAQVILD-----LMTVGKIIKKVP  483 (589)
Q Consensus       457 eiv~~~~-t~~e~~~~-----~~~l~~~lG~~~  483 (589)
                      .++|+.. +++++.+.     +..+.+.++..+
T Consensus       276 ilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          276 VVTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             EECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7888877 77887765     666777776654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.74  E-value=4.5e-08  Score=99.30  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..|+..  |++|++||+++++++.....+.+...            ......++..+++++.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence            3799999999999999999985  79999999999877643211111100            000113466677887799


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCcEEEe
Q 007805          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       387 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +||+||+|+|..              ..+.+++.+.+.+++ ++++++.
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv  116 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIV  116 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            999999999642              144567777888886 5554433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.74  E-value=5.1e-08  Score=99.35  Aligned_cols=107  Identities=26%  Similarity=0.364  Sum_probs=74.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ++||+|||+|.||+.+|..|+.+|+  +|+++|+++++++.....+.+.+ ..  .+          ...+..+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~-~~--~~----------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SF--YP----------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GG--ST----------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh-hh--cC----------CeEEEeCCCHHHh
Confidence            4689999999999999999999999  99999999877652111111110 00  00          0234444567788


Q ss_pred             CCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          386 KDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       386 ~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      ++||+||++++  .            +..++++++.++.++ .++++|++.+.++..
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI  129 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence            99999999993  2            235666888888887 577777766655544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.72  E-value=2.7e-08  Score=103.06  Aligned_cols=104  Identities=15%  Similarity=0.097  Sum_probs=73.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-cccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~-~~~  385 (589)
                      ++||+|||+|.||+.+|..|+++|++|++||+++++++...+...    ..+......      ....+ ..++++ +.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----IIAEGPGLA------GTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EEEESSSCC------EEECCSEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCC----eEEeccccc------cccccceecCCHHHHH
Confidence            468999999999999999999999999999999988776432100    000000000      00112 244565 457


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +++|+||+|+|...  ..+++.++.+.++++++|++..
T Consensus        74 ~~~D~vi~~v~~~~--~~~~~~~l~~~l~~~~~vv~~~  109 (359)
T 1bg6_A           74 KDADVILIVVPAIH--HASIAANIASYISEGQLIILNP  109 (359)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEESS
T ss_pred             hcCCEEEEeCCchH--HHHHHHHHHHhCCCCCEEEEcC
Confidence            89999999999655  4688899999999999777663

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.69  E-value=1.9e-08  Score=102.34  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=68.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      .++||+|||+|.||.++|..++..|.  +|+++|+++++++.....+....   ...+.         .-++. +++.++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~---~~~~~---------~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK---VFAPK---------PVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT---TSSSS---------CCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHh---hhcCC---------CeEEE-cCcHHH
Confidence            45799999999999999999998875  89999999875443222221100   00000         01122 245588


Q ss_pred             CCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 ~~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      +++||+||++++              ++..+++++.+++.+++ |+++++
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~i  120 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFL  120 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEE
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEE
Confidence            999999999953              34478889999999997 555443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.69  E-value=3.2e-09  Score=110.07  Aligned_cols=110  Identities=22%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--------eEEEEeCChHHHHH-HHHHHHHHH--HhhHhcCCCCHHHHHHHhhcc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEANV--RGLVTRGKLTQDKANNALKML  376 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--------~V~~~d~~~~~~~~-~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~i  376 (589)
                      ..||+|||+|.||++||..|+++|+        +|++|.++++...+ ..+.++..-  .+++..-.+        ...+
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~L--------p~~i  105 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITL--------PDNL  105 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCC--------CSSE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcC--------CCCc
Confidence            3589999999999999999999875        59999998763211 111111000  000111111        1467


Q ss_pred             cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC
Q 007805          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (589)
                      .+++|+ +++++||+||.+||  .+..+.+++++.+++++++++++.++++.
T Consensus       106 ~~t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          106 VANPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             EEESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             EEeCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence            888888 77999999999999  66689999999999999999999988865

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.68  E-value=1.2e-08  Score=102.00  Aligned_cols=124  Identities=10%  Similarity=-0.055  Sum_probs=86.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++..+.                             ....+++ +.+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998653211                             2233455 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC-CCCcEEEecC-----CCCCCCCCeeeEe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHF-----FSPAHVMPLLEIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~-----~~p~~~~~lveiv  459 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.  ...+.+.+. ..-...+.-.     .+|.+..+.+.++
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            9999999997666544444667788999999876665533  334544443 2223344433     3445556677788


Q ss_pred             cC
Q 007805          460 RT  461 (589)
Q Consensus       460 ~~  461 (589)
                      |+
T Consensus       254 PH  255 (290)
T 3gvx_A          254 PH  255 (290)
T ss_dssp             CS
T ss_pred             cc
Confidence            86

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.65  E-value=3e-08  Score=100.91  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=88.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||.++|..+...|++|++||+ +++.. .+.           +.|             +...+++ +.++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence            6899999999999999999999999999999 87652 211           111             1223344 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEE--EecCC-------CCCCCCCe
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRII--GAHFF-------SPAHVMPL  455 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~i--g~h~~-------~p~~~~~l  455 (589)
                      +||+|+.++|...+...-+-++..+.+++++++++.+++  +....+.+.+... ++.  +...|       .|.+..+.
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g-~i~gA~lDv~~~eP~~~~~L~~~~n  280 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG-RLAYAGFDVFAGEPNINEGYYDLPN  280 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCTTTTSCCTTGGGCTT
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC-CCcEEEEeCCCCCCCCCChhhhCCC
Confidence            999999999976553332224566788999998876665  3334455544321 222  23333       22234456


Q ss_pred             eeEecCCCC-CHHHHHHHH
Q 007805          456 LEIVRTERT-SAQVILDLM  473 (589)
Q Consensus       456 veiv~~~~t-~~e~~~~~~  473 (589)
                      +.++|+... +.++...+.
T Consensus       281 viltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          281 TFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             EEECSSCTTCBHHHHHHHH
T ss_pred             EEECCcCCcCcHHHHHHHH
Confidence            677776543 444444433

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.64  E-value=1e-07  Score=101.44  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             cceEEEEcCCCC--cHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLM--GSGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~m--G~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      .+||+|||+|.|  |.++|..++..    |++|++||+++++++.+......    .+.....        ..+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~----~l~~~~~--------~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK----YVEEVGA--------DLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH----HHHHTTC--------CCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHH----HhccCCC--------CcEEEEECC
Confidence            368999999997  56667788754    88999999999998875443322    2221111        246778888


Q ss_pred             c-cCCCCCCEEEEecc
Q 007805          382 Y-SEFKDVDMVIEAVI  396 (589)
Q Consensus       382 ~-~~~~~aDlVIeavp  396 (589)
                      + +++++||+||+++|
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            8 78999999999995

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.60  E-value=3.5e-09  Score=106.84  Aligned_cols=164  Identities=12%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-CC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~  387 (589)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++..           ...|...        ..+. .+..+.+ ++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~--------~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAPA--------QDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCeec--------ccee-cCchHhcCCC
Confidence            589999999999999999999999999999996543210           0112110        0111 1222444 89


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEec------CCCCCCCC-CeeeEec
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAH------FFSPAHVM-PLLEIVR  460 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h------~~~p~~~~-~lveiv~  460 (589)
                      +|+||.|||  .....++++++.++++++++|++...++...+.   ++. .++++.-      ...|-... ....+..
T Consensus        63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998  445678889999999999999998888877654   222 2333321      11221110 0011111


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHH
Q 007805          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  501 (589)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~  501 (589)
                      +   +.+..+.+.+++..-|..+.+..|.-+.....++.+.
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~  174 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNL  174 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHH
Confidence            1   3456777888888888888777776665555544433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.58  E-value=1.7e-07  Score=94.91  Aligned_cols=116  Identities=18%  Similarity=0.063  Sum_probs=75.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+.+|..|+ +|++|++|++++++++...+           .|......-......+.  .+.+.+.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~~--~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADCS--ADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCE--EESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeeccccc--ccccccCCC
Confidence            58999999999999999999 99999999999887665422           11000000000000011  112456789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEEE
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIG  443 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig  443 (589)
                      |+||.||+  .....+++.++.+. ++++ |+|...++... .+.+.++. .++++
T Consensus        69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~  119 (307)
T 3ego_A           69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYV  119 (307)
T ss_dssp             SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEE
T ss_pred             CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEE
Confidence            99999997  44466777877764 6777 77888888875 45544443 34433

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.57  E-value=1.9e-07  Score=93.51  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..|+..|+  +|++||+++++++.....+.+....+   +         ....+..++|.++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  99999999988663222222211100   0         012456666788999


Q ss_pred             CCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+||.+..-  +            ..+.+++.+++.+++ |+++++..|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            99999998732  1            233445556677775 566665444

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.55  E-value=6.7e-08  Score=99.22  Aligned_cols=138  Identities=13%  Similarity=0.080  Sum_probs=89.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||+++...+.+.+           .             .+...+++ +.+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------T-------------GAKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------H-------------CCEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------C-------------CCeEcCCHHHHHhc
Confidence            68999999999999999999999999999998644333211           0             12334455 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEE--EecCC--CC------CCCCCe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRII--GAHFF--SP------AHVMPL  455 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~i--g~h~~--~p------~~~~~l  455 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+-.  -..+.+.+... ++.  +.--|  .|      .+..+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~pL~~~~n  299 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG-HIGGYSGDVWDPQPAPKDHPWRYMPN  299 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCSSSSCCTTCGGGTSTT
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhC-CccEEEeCCCCCCCCCCCChhhcCCC
Confidence            9999999997665544444667778999999876555433  33455544322 222  33222  22      234455


Q ss_pred             eeEecCC-CCCHHHHHH
Q 007805          456 LEIVRTE-RTSAQVILD  471 (589)
Q Consensus       456 veiv~~~-~t~~e~~~~  471 (589)
                      +.++|+- ..+.++..+
T Consensus       300 vilTPHia~~t~ea~~~  316 (351)
T 3jtm_A          300 QAMTPHTSGTTIDAQLR  316 (351)
T ss_dssp             BCCCCSCGGGSHHHHHH
T ss_pred             EEECCcCCCCCHHHHHH
Confidence            6677763 345554444

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.54  E-value=2.6e-07  Score=93.12  Aligned_cols=134  Identities=10%  Similarity=0.005  Sum_probs=87.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||.++|..+...|++|++||++++  +.               +             .....++ +.++
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~  173 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALR  173 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHh
Confidence            36899999999999999999999999999999864  10               0             1112344 5688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCC---CCC------CCCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF---SPA------HVMP  454 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~---~p~------~~~~  454 (589)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+++-.++  .+.+.+. ..-.-.+..-|   .|.      +..+
T Consensus       174 ~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~  253 (303)
T 1qp8_A          174 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLP  253 (303)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTST
T ss_pred             hCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCC
Confidence            9999999999776544333346777899999987666653332  3444443 22233455555   332      2345


Q ss_pred             eeeEecCCCC---CHHHHHH
Q 007805          455 LLEIVRTERT---SAQVILD  471 (589)
Q Consensus       455 lveiv~~~~t---~~e~~~~  471 (589)
                      .+.++|+...   ++++.+.
T Consensus       254 nviltPH~~~~~~t~e~~~~  273 (303)
T 1qp8_A          254 NVVATPWVAGGYGNERVWRQ  273 (303)
T ss_dssp             TEEECCSCSSSSSCHHHHHH
T ss_pred             CEEECCCcCCCCCCHHHHHH
Confidence            6667776543   4555433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.53  E-value=1e-07  Score=96.74  Aligned_cols=128  Identities=10%  Similarity=0.035  Sum_probs=85.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||+++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            689999999999999999999999999999986542210                          011112344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCC-CCcEEEecCCC--------CCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFFS--------PAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~~--------p~~~~~lv  456 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+-  .-..+.+.+.. .-...+.-.|.        |.+..+.+
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  271 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV  271 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE
Confidence            999999999777665545566777899999987665543  33455555432 22334443332        22344566


Q ss_pred             eEecCC
Q 007805          457 EIVRTE  462 (589)
Q Consensus       457 eiv~~~  462 (589)
                      .++|+-
T Consensus       272 ilTPHi  277 (324)
T 3evt_A          272 LITPHI  277 (324)
T ss_dssp             EECCSC
T ss_pred             EEcCcc
Confidence            677753

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.52  E-value=3.2e-08  Score=100.05  Aligned_cols=138  Identities=16%  Similarity=0.086  Sum_probs=86.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+           .+.|             +... ++ +.+++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-----------KEVN-------------GKFV-DLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-----------HHTT-------------CEEC-CHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-----------hhcC-------------cccc-CHHHHHhh
Confidence            68999999999999999999999999999999865 222           1111             1121 34 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~--------p~~~~~lv  456 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.+  ..+.+.+. ..-.-.+...|.        |.+..+.+
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  276 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV  276 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE
Confidence            99999999976654332224566778999998876665333  34444432 122223333322        22344566


Q ss_pred             eEecCCCC-CHHHHHHH
Q 007805          457 EIVRTERT-SAQVILDL  472 (589)
Q Consensus       457 eiv~~~~t-~~e~~~~~  472 (589)
                      .++|+... +.++...+
T Consensus       277 iltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          277 VLTPHIGASTVEAQERA  293 (307)
T ss_dssp             EECSSCTTCBHHHHHHH
T ss_pred             EECCccccCcHHHHHHH
Confidence            77776543 44444333

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.50  E-value=8.8e-08  Score=97.81  Aligned_cols=99  Identities=15%  Similarity=0.095  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|++||++++..                .             ......++ +.+++
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~-------------~~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------V-------------DWIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------S-------------CCEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------c-------------CceecCCHHHHHhc
Confidence            689999999999999999999999999999986531                0             11223445 66889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~  436 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.++  .+.+.+.
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~  273 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK  273 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC-------------
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            999999999777665555577778899999988666554443  3444443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.49  E-value=7.6e-08  Score=97.61  Aligned_cols=103  Identities=12%  Similarity=0.095  Sum_probs=71.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      =++|+|||+|.||.++|..+...|++|++||++++... +           .+.|             +.. .++ +.++
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~-----------~~~g-------------~~~-~~l~ell~  195 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-A-----------EKIN-------------AKA-VSLEELLK  195 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-H-----------HHTT-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-H-----------HhcC-------------cee-cCHHHHHh
Confidence            36899999999999999999999999999999986532 1           1111             111 244 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (589)
                      +||+|+.++|...+...-+-++..+.+++++++++.+++-.+  ..+.+.+.
T Consensus       196 ~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            999999999966643322224556678999998876665333  34555543

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.48  E-value=7.8e-07  Score=83.77  Aligned_cols=137  Identities=21%  Similarity=0.219  Sum_probs=99.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+.+...|..++.++..+.|+|.=.    |.|+++.                ....++ +.+...++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------~~~~I~-~~i~~~~~~V~t~~~   93 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVT----------------AGFAIY-DTIQHIKPDVQTICI   93 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHH----------------HHHHHH-HHHHHhcCCcEEEEe
Confidence            4889999999999999987766676666321    1223321                122455 678889999999999


Q ss_pred             CcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhh------------------hHhhhc--CHHHHHHHHH
Q 007805          107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEMML  164 (589)
Q Consensus       107 G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~--G~~~a~~l~l  164 (589)
                      |.|.++|..++++||  .|++.++++|.+....-|.   .|-..                  .+.+.-  ......+++-
T Consensus        94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~  170 (203)
T 3qwd_A           94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD  170 (203)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred             eeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            999999999999999  6999999999876554321   11110                  112222  3455666777


Q ss_pred             cCCCCCHHHHHHcCCcceecCch
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSE  187 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~  187 (589)
                      ....++|+||+++||||+|++..
T Consensus       171 ~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          171 RDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             SCCCEEHHHHHHHTSCSEECCCC
T ss_pred             cCceecHHHHHHcCCcCEecCCc
Confidence            77889999999999999998654

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.47  E-value=1.1e-06  Score=93.09  Aligned_cols=201  Identities=17%  Similarity=0.193  Sum_probs=146.0

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC---C-----------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCCCcCCCC
Q 007805            3 APRVTMEVG-NDGVAIITLINPP---V-----------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGRFSGGFD   66 (589)
Q Consensus         3 ~~~~~~~~~-~~~v~~i~l~~p~---~-----------N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g~~F~aG~D   66 (589)
                      |+.+...++ ..+++.++...|.   .           +.+...|-.||.+++..+. +++++...++...|+.      
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------  338 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------  338 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence            455555554 4568888888762   1           4455678899977777766 6788999998776643      


Q ss_pred             chhhhhc-------cCCCcccccchhHHHHHHHHHHhCCCcEEEEe-CCcccchh-hHHhhhcCEEEEeC-------Cce
Q 007805           67 INVFQKV-------HGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ  130 (589)
Q Consensus        67 l~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav-~G~a~GgG-~~lala~D~~ia~~-------~a~  130 (589)
                       ..+...       .......+...+..+.+ .++--...-++|.| .|.|+.|- +||+++||..++-+       .+.
T Consensus       339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence             322211       01111222233344555 55777888899988 68997776 49999999999962       378


Q ss_pred             EeccccccCCCCChhhhhhHhhhc-CHHHHHH--HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhh
Q 007805          131 LGLPELTLGVIPGFGGTQRLPRLV-GLSKAIE--MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  207 (589)
Q Consensus       131 ~~~pe~~~Gl~p~~g~~~~l~~~~-G~~~a~~--l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~  207 (589)
                      +.+.+.++|..|-..+..||.++. |.....+  -...|+++++++|.++|||+...++-+.+++.+-..++-++.||.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA  496 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence            999999999999888888887664 4333332  2346999999999999999999888899999999999999999987


Q ss_pred             hhhh
Q 007805          208 IRSL  211 (589)
Q Consensus       208 ~~~~  211 (589)
                      +..+
T Consensus       497 ~~~~  500 (556)
T 2w3p_A          497 LTGL  500 (556)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.46  E-value=5e-08  Score=99.65  Aligned_cols=101  Identities=9%  Similarity=0.016  Sum_probs=72.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++.. .+           .+.|             +.. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-----------~~~g-------------~~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VS-----------ASFG-------------VQQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HH-----------HHTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hh-----------hhcC-------------cee-CCHHHHHhc
Confidence            689999999999999999999999999999987642 21           1111             111 244 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhccc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~  435 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.++  .+.+.+
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            999999999776544433356677899999987666654433  444444

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.46  E-value=3.4e-07  Score=92.54  Aligned_cols=102  Identities=17%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++.-...+..... .....           ..+..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~~~~-----------~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSP-IHGFD-----------TRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHH-HHTCC-----------CEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccc-ccCCC-----------cEEEECCCHHHhC
Confidence            489999999999999999999887  999999999876542222222110 00000           1234456679999


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+||.+.+-.              ..+.+++.+.+.+++ |+++++..|
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt  118 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVA  118 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence            999999987431              223345555667765 566555433

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.45  E-value=2.1e-07  Score=95.64  Aligned_cols=137  Identities=9%  Similarity=0.026  Sum_probs=87.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|++||+++.. +.+           .+.|             +...+++ +.+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence            68999999999999999999999999999998532 221           1111             2334455 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCC--------CCCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF--------SPAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~--------~p~~~~~lv  456 (589)
                      ||+|+.++|-..+.+.-+-.+..+.++++++++..+.+-.+  ..+.+.+. ..-...+.--|        +|.+..+.+
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  295 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC  295 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCE
Confidence            99999999977665544445677789999998765554332  34444432 12222333322        222344566


Q ss_pred             eEecCCC-CCHHHHH
Q 007805          457 EIVRTER-TSAQVIL  470 (589)
Q Consensus       457 eiv~~~~-t~~e~~~  470 (589)
                      .++|+-. .++++.+
T Consensus       296 ilTPHia~~t~e~~~  310 (352)
T 3gg9_A          296 ICTPHIGYVERESYE  310 (352)
T ss_dssp             EECCSCTTCBHHHHH
T ss_pred             EECCCCCCCCHHHHH
Confidence            6777543 3444433

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.45  E-value=5.9e-07  Score=85.57  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+.+.+.|..++.++. +.|+|.=.    |.|+++.                ....++ +.|...++||++.+.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~----------------a~~~I~-~~i~~~~~pV~t~v~  104 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSIN----------------EGLAIL-DIFNYIKSDIQTISF  104 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence            4788889999999998876555 76666421    1123221                122455 678889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCC---Chhhh----h--------hHhhh--cCHHHHHHHHHcCC
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GFGGT----Q--------RLPRL--VGLSKAIEMMLLSK  167 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p---~~g~~----~--------~l~~~--~G~~~a~~l~ltg~  167 (589)
                      |.|..+|.-++++||.  |++.+++.+++.....|...   +....    .        .+.+.  .......+++-.+.
T Consensus       105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~  184 (215)
T 2f6i_A          105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY  184 (215)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred             eEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCe
Confidence            9999999999999999  99999999987665433210   00000    0        01111  23445556665667


Q ss_pred             CCCHHHHHHcCCcceecCc
Q 007805          168 SITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~  186 (589)
                      .++++||+++||||++.+.
T Consensus       185 ~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          185 YMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             EECHHHHHHHTSCSEECCC
T ss_pred             ecCHHHHHHCCCCCEecCC
Confidence            7899999999999999854

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.44  E-value=4.2e-07  Score=85.37  Aligned_cols=136  Identities=17%  Similarity=0.159  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+.+.+.|..++.++..+.|+|.=.    |.|+++.                ....++ +.|..+++||++.+.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------a~~~I~-~~i~~~~~pV~~~v~   92 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVIT----------------AGMSIY-DTMQFIKPDVSTICM   92 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence            4788999999999999987766787777422    1223221                122455 678889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh-h-----------------hHhhhcC--HHHHHHHHH
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIEMML  164 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~-~-----------------~l~~~~G--~~~a~~l~l  164 (589)
                      |.|..+|.-++++||.  |++.+++.++.....-|.   .|-. .                 .+.+..|  .....+++-
T Consensus        93 g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~  169 (193)
T 1yg6_A           93 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE  169 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred             eeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            9999999999999999  999999998875544221   1110 0                 1122223  344455555


Q ss_pred             cCCCCCHHHHHHcCCcceecCc
Q 007805          165 LSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      .+..++++||+++||||++.++
T Consensus       170 ~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          170 RDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             SCEEEEHHHHHHHTSSSEECCC
T ss_pred             CCeEEcHHHHHHcCCCCEecCC
Confidence            5667899999999999999864

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.44  E-value=4.6e-07  Score=94.51  Aligned_cols=133  Identities=14%  Similarity=0.135  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||+++|..+...|++|++||+++...                .            .......++ +.+++
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence            689999999999999999999999999999874310                0            011223445 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEE--Eec-C-C----------CCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRII--GAH-F-F----------SPAH  451 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~i--g~h-~-~----------~p~~  451 (589)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+-.  ...+.+.+... ++.  +.- | .          +|.+
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g-~i~gAalDVf~~EP~~~~~~~~~pL~  287 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG-HLAGAAIDVFPVEPASNGERFSTPLQ  287 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT-SEEEEEECCCSSCCSSTTSCCCCTTT
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC-CccEEEeCCCCCCCCCcccccchhHh
Confidence            9999999997766554444566778999999876665533  34555555332 222  232 1 1          2334


Q ss_pred             CCCeeeEecCC-CCCHHHHH
Q 007805          452 VMPLLEIVRTE-RTSAQVIL  470 (589)
Q Consensus       452 ~~~lveiv~~~-~t~~e~~~  470 (589)
                      ..+.+.++|+- ..++|+.+
T Consensus       288 ~~~nvilTPHig~~T~ea~~  307 (416)
T 3k5p_A          288 GLENVILTPHIGGSTEEAQE  307 (416)
T ss_dssp             TCTTEEECCSCTTCCHHHHH
T ss_pred             cCCCEEECCCCCCCCHHHHH
Confidence            45667888873 34555443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.43  E-value=1.1e-07  Score=96.39  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence            689999999999999999999999999999986422110                          011112344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCC--------CCCCCCCee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF--------SPAHVMPLL  456 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~--------~p~~~~~lv  456 (589)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+-.+  ..+.+.+.. .-...+.--|        +|.+..+.+
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence            99999999966554433334556678999998766655333  345554432 2222333322        233445667


Q ss_pred             eEecCC
Q 007805          457 EIVRTE  462 (589)
Q Consensus       457 eiv~~~  462 (589)
                      .++|+-
T Consensus       275 ilTPHi  280 (324)
T 3hg7_A          275 IITPHN  280 (324)
T ss_dssp             EECCSC
T ss_pred             EEeCCC
Confidence            788753

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.42  E-value=7.9e-08  Score=99.96  Aligned_cols=130  Identities=12%  Similarity=0.034  Sum_probs=83.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++..+.+.           +.|             +....++ +.+++
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999865433211           111             1222344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCCCCcEE--EecCCC--------CCCCCCe
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRII--GAHFFS--------PAHVMPL  455 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~i--g~h~~~--------p~~~~~l  455 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+... ++-  ++..|.        |.+..+.
T Consensus       248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~pL~~~~n  326 (393)
T 2nac_A          248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG-RLAGYAGDVWFPQPAPKDHPWRTMPY  326 (393)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT-SEEEEEESCCSSSSCCTTCGGGTSTT
T ss_pred             CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC-CeeEEEEEecCCCCCCCCChhHcCCC
Confidence            99999999966554332225666788999998866665333  3455554322 222  233222        2234456


Q ss_pred             eeEecCCC
Q 007805          456 LEIVRTER  463 (589)
Q Consensus       456 veiv~~~~  463 (589)
                      +.++|+..
T Consensus       327 vilTPHia  334 (393)
T 2nac_A          327 NGMTPHIS  334 (393)
T ss_dssp             BCCCCSCT
T ss_pred             EEECCCCC
Confidence            66777643

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.42  E-value=5e-07  Score=95.43  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             ceEEEEcCCCC--cHHHHHHHHh----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLM--GSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~m--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .||+|||+|.|  |.+|+..++.    .| +|++||++++++++... +.+    ....          ...++++++|+
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~----~l~~----------~~~~I~~TtD~   69 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGN----HSGN----------GRWRYEAVSTL   69 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHT----TSTT----------SCEEEEEESSH
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHH----HHhc----------cCCeEEEECCH
Confidence            58999999998  5799988886    57 99999999998877532 111    1111          22568889998


Q ss_pred             -cCCCCCCEEEEecc
Q 007805          383 -SEFKDVDMVIEAVI  396 (589)
Q Consensus       383 -~~~~~aDlVIeavp  396 (589)
                       +++++||+||++++
T Consensus        70 ~eAl~dADfVI~air   84 (450)
T 3fef_A           70 KKALSAADIVIISIL   84 (450)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             HHHhcCCCEEEeccc
Confidence             78999999999995

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.41  E-value=8.3e-07  Score=94.57  Aligned_cols=77  Identities=17%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +||+|||+|.+ |.++|..|+..     +.+|++||+++++++.... +...+....  +         ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~-~~~~~l~~~--~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG-ACDVFIREK--A---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH-HHHHHHHHH--C---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHH-HHHHHhccC--C---------CCCEEEEECCH
Confidence            49999999998 55578788887     6689999999998777532 222111001  1         11357778887


Q ss_pred             -cCCCCCCEEEEeccC
Q 007805          383 -SEFKDVDMVIEAVIE  397 (589)
Q Consensus       383 -~~~~~aDlVIeavpe  397 (589)
                       +++++||+||.++|.
T Consensus        97 ~eal~~AD~VViaag~  112 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             HHHHSSCSEEEECCCT
T ss_pred             HHHHcCCCEEEEcCCC
Confidence             789999999999975

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.41  E-value=4.5e-07  Score=92.22  Aligned_cols=104  Identities=19%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      ...+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+....    ...         ....+..++|++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~----~~~---------~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS----LFL---------KTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG----GGC---------SCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh----hcc---------CCCeEEEcCCHH
Confidence            456899999999999999999999997  89999999877665333222110    000         012345567888


Q ss_pred             CCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          384 EFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       384 ~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++++||+||.+.  |.            +..+.+++.+.+.+++ |+++++..|
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvt  136 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVS  136 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            899999999886  22            2245556667788885 555554333

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.41  E-value=4.9e-07  Score=91.87  Aligned_cols=102  Identities=27%  Similarity=0.328  Sum_probs=68.3

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-ccCCcc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYS  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~  383 (589)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+..... +..             ..+. .+++++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~-------------~~v~i~~~~~~   69 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAP-------------QPVKTSYGTYE   69 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSS-------------SCCEEEEECGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-ccc-------------CCeEEEeCcHH
Confidence            45789999999999999999999987  999999998877653333322110 000             1112 244568


Q ss_pred             CCCCCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          384 EFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       384 ~~~~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++++||+||.++..  +            ..+.+++.+.+.+++ |+++++..|
T Consensus        70 a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvt  122 (326)
T 3pqe_A           70 DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVAT  122 (326)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred             HhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcC
Confidence            89999999998732  1            133445556677776 466655443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.39  E-value=3.2e-07  Score=96.03  Aligned_cols=126  Identities=15%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||+.+|..+...|++|+.||+++...                .+            ......++ +.+++
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence            689999999999999999999999999999975320                01            12233345 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCCCCcEE--E-----ecCC-------CCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRII--G-----AHFF-------SPAH  451 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~i--g-----~h~~-------~p~~  451 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+... ++.  +     .+|.       +|.+
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g-~i~gA~lDVf~~EP~~~~~~~~~pL~  276 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASK-HLAGAAIDVFPTEPATNSDPFTSPLA  276 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT-SEEEEEEEC---------CTTTGGGT
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC-CccEEEEeecCCCCCCccccccchhh
Confidence            99999999987665543335566789999998766555433  3455544321 221  2     2221       2334


Q ss_pred             CCCeeeEecCCC
Q 007805          452 VMPLLEIVRTER  463 (589)
Q Consensus       452 ~~~lveiv~~~~  463 (589)
                      ..+.+.++|+-.
T Consensus       277 ~~~nvilTPHi~  288 (404)
T 1sc6_A          277 EFDNVLLTPHIG  288 (404)
T ss_dssp             TCTTEEEECCCS
T ss_pred             cCCCEEECCCCC
Confidence            567788888654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.38  E-value=3.3e-07  Score=93.70  Aligned_cols=101  Identities=14%  Similarity=0.005  Sum_probs=73.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|+.||+++...+..                          ......+++ +.+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~g~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--------------------------EGAIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--------------------------TTCEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--------------------------cCCeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432221                          012333455 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+-.  -..+.+.+
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  277 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL  277 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            9999999997766554444667778999999876555433  34455544

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.37  E-value=1.5e-07  Score=95.32  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=84.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||.++|..+...|++|++||++++..+                              +. ..++ +.++
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~  192 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK  192 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence            36899999999999999999999999999999865311                              11 1233 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCCCCcEEEecCCC--C------CCCCCee
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS--P------AHVMPLL  456 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~--p------~~~~~lv  456 (589)
                      +||+|+.++|...+...-+-++..+.++++++++..+++-.+  ..+.+.+...-.-.+...|.  |      .+..+.+
T Consensus       193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  272 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNA  272 (311)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTE
T ss_pred             hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCE
Confidence            899999999976544332223455678999998866665333  34555554111223333332  2      2344666


Q ss_pred             eEecCCCC-CHHHH
Q 007805          457 EIVRTERT-SAQVI  469 (589)
Q Consensus       457 eiv~~~~t-~~e~~  469 (589)
                      .++|+... +.++.
T Consensus       273 iltPh~~~~t~~~~  286 (311)
T 2cuk_A          273 VITPHIGSAGRTTR  286 (311)
T ss_dssp             EECCSCTTCBHHHH
T ss_pred             EECCcCCCCCHHHH
Confidence            77776543 34443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.37  E-value=2.1e-07  Score=95.42  Aligned_cols=102  Identities=14%  Similarity=0.031  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||++++... . .          ..|             +....++ +.+++
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-R----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-H----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-h----------hcC-------------CeecCCHHHHHhc
Confidence            5799999999999999999999999999998765311 1 0          001             1222344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.  ...+.+.+
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            9999999997655433333556678899998886666533  33454444

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.36  E-value=6.9e-07  Score=91.91  Aligned_cols=138  Identities=8%  Similarity=0.038  Sum_probs=87.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|+.||+++.. +.+           .+.|             +.. .++ +.+++
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~-~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENG-------------VEP-ASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTT-------------CEE-CCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcC-------------eee-CCHHHHHhc
Confidence            68999999999999999999899999999998532 111           1111             111 244 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCC--C------CCCCCCeee
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFF--S------PAHVMPLLE  457 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~--~------p~~~~~lve  457 (589)
                      ||+|+.++|-..+.+.-+-.+..+.++++++++..+.+-  .-..+.+.+....--.+.--|  .      |.+..+.+.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence            999999999777665555467778899999987655543  334455554432111333322  2      223456677


Q ss_pred             EecCCC-CCHHHHHHH
Q 007805          458 IVRTER-TSAQVILDL  472 (589)
Q Consensus       458 iv~~~~-t~~e~~~~~  472 (589)
                      ++|+-. .+.++.+.+
T Consensus       311 lTPHia~~t~e~~~~~  326 (365)
T 4hy3_A          311 RSAHRAGALDSAFKKM  326 (365)
T ss_dssp             ECCSCSSCCHHHHHHH
T ss_pred             ECCccccCHHHHHHHH
Confidence            888643 345544433

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.34  E-value=1.4e-06  Score=85.55  Aligned_cols=139  Identities=15%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .++..+.+.+...|..++.++..+.|+|.=.    |-|+++.                ....++ +.|...++||++.+.
T Consensus        90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~----------------ag~aIy-d~I~~~k~pV~t~v~  148 (277)
T 1tg6_A           90 PIDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVT----------------AGLAIY-DTMQYILNPICTWCV  148 (277)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSCSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEc
Confidence            4888899999999998876555677777422    1222221                123455 678889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh---------------hHhhhc--CHHHHHHHHHcCC
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ---------------RLPRLV--GLSKAIEMMLLSK  167 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~---------------~l~~~~--G~~~a~~l~ltg~  167 (589)
                      |.|..+|.-|+++||.  |++.++++++.....-|......-..               .+.+.-  ......+++-.+.
T Consensus       149 G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~  228 (277)
T 1tg6_A          149 GQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDR  228 (277)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCE
T ss_pred             cEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence            9999999999999999  99999999887655333211000000               011111  2344556665667


Q ss_pred             CCCHHHHHHcCCcceecCc
Q 007805          168 SITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~  186 (589)
                      .++++||+++||||+|...
T Consensus       229 ~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          229 YMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             EECHHHHHHHTSCSEECSS
T ss_pred             ccCHHHHHHCCCCCEecCc
Confidence            7899999999999999854

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.33  E-value=1.8e-07  Score=95.34  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=73.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      =++|||||+|.||+++|..+...|++|++||+++...+.+..           .|             +... ++ +.++
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~-~l~ell~  199 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG-------------LRQV-ACSELFA  199 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT-------------EEEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC-------------ceeC-CHHHHHh
Confidence            368999999999999999999999999999998743322211           01             1222 34 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      +||+|+.++|-..+...-+-++..+.++++++++..+.+-.  ...+.+.+
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            99999999997666554444677788999999876665533  33454444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.32  E-value=1e-07  Score=96.40  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||+++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999987532110                          000011233 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+-.  -..+.+.+
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence            9999999997766554444667778999999876655433  34455544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.27  E-value=2.7e-06  Score=86.34  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .+||+|||+|.+|.+++..++..|+  +|.++|+++++++.....+.... .+.. ..          -.++. ++.+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~-~~----------~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSP-TT----------VRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSS-SC----------CEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcC-CC----------eEEEe-CCHHHh
Confidence            4689999999999999999998885  89999999887664222222210 1110 00          12232 456889


Q ss_pred             CCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh
Q 007805          386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (589)
Q Consensus       386 ~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (589)
                      ++||+||.+++.  ++            .+.+++.+++.+++ |+++++..  +-|+..+.
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t  130 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILA  130 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHH
Confidence            999999999843  22            44556666777775 56655543  34554433

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.27  E-value=3.2e-07  Score=93.79  Aligned_cols=101  Identities=13%  Similarity=-0.004  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..+...|++|++||++++..  + +.                        .+...+++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~------------------------~~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EK------------------------KGYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HH------------------------TTCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hh------------------------hCeecCCHHHHHhh
Confidence            689999999999999999999999999999987643  1 00                        01222244 55788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.  ...+.+.+.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997766443232455677899998886666533  344555443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.26  E-value=2e-07  Score=96.37  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=72.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||.++|..+...|++ |++||+++...+.+.           +.|             +....++ +.++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            6899999999999999999999997 999999875443321           111             1223345 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhccc
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKT  435 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~  435 (589)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+.+-  ....+.+.+
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL  271 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL  271 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence            9999999999765544433355667889999887666553  333455544

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.25  E-value=1.2e-06  Score=82.37  Aligned_cols=136  Identities=21%  Similarity=0.164  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      .+++.+.+.+...|..++.++..+.|+|.=.    |.|+++.                ....++ +.+...++|+++.+.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------~~~~I~-~~i~~~~~~v~t~~~   96 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVT----------------AGMGVY-DTMQFIKPDVSTICI   96 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHHhCCCeEEEEc
Confidence            4889999999999999987666676666321    2223321                122455 678889999999999


Q ss_pred             CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh------------------hHhhhc--CHHHHHHHHH
Q 007805          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEMML  164 (589)
Q Consensus       107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~--G~~~a~~l~l  164 (589)
                      |.|.++|.-++++||.  |++.+++++.+....-|.   .|-..                  .+.+.-  ......+++-
T Consensus        97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~  173 (201)
T 3p2l_A           97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTD  173 (201)
T ss_dssp             EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred             CEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhh
Confidence            9999999999999998  999999998776554221   11110                  111222  2344555555


Q ss_pred             cCCCCCHHHHHHcCCcceecCc
Q 007805          165 LSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ....++|+||+++||||+|++.
T Consensus       174 ~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          174 RDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             SCEEEEHHHHHHHTSCSEECCC
T ss_pred             cCeeecHHHHHHcCCccEecCC
Confidence            5566899999999999999854

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.24  E-value=1.8e-07  Score=95.56  Aligned_cols=99  Identities=17%  Similarity=0.088  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|++||++++..              .+.             ..... ++ +.+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~-------------~~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEP-------------FLTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTT-------------TCEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhc-------------ccccc-CHHHHHhc
Confidence            689999999999999999999999999999987531              010             11222 44 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~  435 (589)
                      ||+|+.++|-..+.+.-+-.+..+.++++++++..+.+-.  ...+.+.+
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  250 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL  250 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHH
Confidence            9999999997665544444566778999999876655433  33454444

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.22  E-value=1.1e-06  Score=89.70  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             CccceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +..+||+|||+ |.+|.++|..++..|.  +|+++|+++++++.....+...        ...       ..++..++++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~   70 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDI   70 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCH
Confidence            34579999997 9999999999999984  8999999988766433333221        010       1245666776


Q ss_pred             -cCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCc
Q 007805          383 -SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHC  417 (589)
Q Consensus       383 -~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~  417 (589)
                       +++++||+||.+.  |.            +..+.+++...+.+++++..
T Consensus        71 ~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence             7799999999986  21            33456667777888885553

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.21  E-value=1.1e-06  Score=89.20  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.||..++..+++. |+ +|++||+++++.+...+.+          +           ..+...+++ +.+
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~-----------~~~~~~~~~~e~v  194 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------Q-----------GEVRVCSSVQEAV  194 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------S-----------SCCEECSSHHHHH
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------h-----------CCeEEeCCHHHHH
Confidence            5799999999999999999876 76 8999999999877642210          1           013445566 667


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +++|+||.|+|...    .++..  +.++++++|++.++
T Consensus       195 ~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g~  227 (312)
T 2i99_A          195 AGADVIITVTLATE----PILFG--EWVKPGAHINAVGA  227 (312)
T ss_dssp             TTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECCC
T ss_pred             hcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCCC
Confidence            89999999998532    33322  56788888877543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.20  E-value=1e-05  Score=71.58  Aligned_cols=107  Identities=14%  Similarity=0.047  Sum_probs=66.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .+++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+.-     ...-.|..+ ++....           ..+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~-----~~~~~gd~~~~~~l~~-----------~~~   68 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG-----FDAVIADPTDESFYRS-----------LDL   68 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT-----CEEEECCTTCHHHHHH-----------SCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-----CcEEECCCCCHHHHHh-----------CCc
Confidence            357899999999999999999999999999999999877653210     000011111 110000           125


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      +++|+||.++| +.+....+...+...- ...|++...+....+.+
T Consensus        69 ~~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           69 EGVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             ccCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence            78999999998 4444444444444444 55666655554444443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.20  E-value=4.9e-06  Score=83.07  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.++|..++.++.  ++.++|++++..+--...+.+... ...           ....+..++|+++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~-~~~-----------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GID-----------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG-GGT-----------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc-cCC-----------CCCeEecCCCHHHhC
Confidence            589999999999999999998875  899999998765432222222110 000           002345567889999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+||.+.  |-            +..+.+++..++.++++ +++++..|
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvs  118 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECS
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            999999876  33            23345566667777765 45554443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.18  E-value=2.5e-06  Score=86.49  Aligned_cols=101  Identities=20%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCcc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  383 (589)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+....    .           .+..+.. +.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~----~-----------~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL----P-----------FTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh----h-----------hcCCcEEEECcHH
Confidence            44789999999999999999999887  89999999887665322222110    0           0012222 34568


Q ss_pred             CCCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       384 ~~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++++||+||.+..-              +..+.+++.+.+.++++ +++++..|
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvt  125 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAA  125 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECS
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEcc
Confidence            89999999998632              22334555566777764 66655443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.18  E-value=1.3e-05  Score=70.47  Aligned_cols=98  Identities=19%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|+|+|.||..+|..|.+.|++|+++|++++.++...+..    .-..-.+.. +.....           ...+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~-----------~~~~~~   69 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLE-----------DAGIED   69 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHH-----------HTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHH-----------HcCccc
Confidence            5799999999999999999999999999999988766542110    000000111 000000           023678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +|+||.|+|.+.  ....+.++.+.++++.+++..+
T Consensus        70 ~d~vi~~~~~~~--~~~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           70 ADMYIAVTGKEE--VNLMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             CSEEEECCSCHH--HHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCEEEEeeCCch--HHHHHHHHHHHcCCCEEEEEec
Confidence            999999998542  2234445556677777776443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.16  E-value=6.8e-06  Score=87.14  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      +||+|||+|.+ |.+++..|+..     +.+|++||+++  ++++.... +...+..  ..+ .        ...+..++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~~~--~~~-~--------~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRMVE--KAG-V--------PIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHHHH--HTT-C--------CCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHHHh--hcC-C--------CcEEEEeC
Confidence            58999999999 77888888874     56899999999  88776432 2222111  111 0        13566778


Q ss_pred             Cc-cCCCCCCEEEEeccCCh----------------------------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          381 DY-SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      |+ +++++||+||.++|-..                                  .+..++.+++.+++ |+++++.
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~  150 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLIN  150 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE
Confidence            87 88999999999998421                                  34567777888887 5566653

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.12  E-value=3.8e-07  Score=94.08  Aligned_cols=109  Identities=13%  Similarity=0.022  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||+++|..+...|++|++||++.+...               .+              ....++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~--------------~~~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE--------------GDFRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC--------------SCBCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC--------------cccCCHHHHHhh
Confidence            6899999999999999999999999999997533210               00              112344 56789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecC
Q 007805          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHF  446 (589)
Q Consensus       388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~  446 (589)
                      ||+|+.++|-..+    ...-+-.+..+.++++++++..+.+-.  -..+.+.+.. ...-.++--
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV  236 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDV  236 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeec
Confidence            9999999996655    333333556677899999876555433  3445555432 223344443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.11  E-value=2.3e-06  Score=86.95  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=65.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      .+||+|||+|.+|.++|..++..|+  +|+++|+++++++.....        +..+. ..      .--+++. ++.++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d--------l~~~~~~~------~~~~i~~-~~~~a   71 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGLPFM------GQMSLYA-GDYSD   71 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSCCCT------TCEEEC---CGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH--------HHHhHHhc------CCeEEEE-CCHHH
Confidence            3689999999999999999999998  999999998766531111        11110 00      0012332 45688


Q ss_pred             CCCCCEEEEeccCCh--------------HHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~~aDlVIeavpe~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      +++||+||.+++...              .+.+++.+.+.+++ |+++++..  +-|+..+
T Consensus        72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~  129 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDII  129 (318)
T ss_dssp             GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHH
T ss_pred             hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHH
Confidence            999999999986422              12356667788886 56655543  3454433

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.11  E-value=7.3e-06  Score=83.12  Aligned_cols=97  Identities=22%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~  385 (589)
                      .||+|||+|.+|.+++..++..++  +|+++|+++++++.....+....    ..           ...++. ..+.+++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~~-----------~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----AF-----------TAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----GG-----------SCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----Hh-----------cCCeEEEECCHHHh
Confidence            689999999999999999998886  89999999887764322222111    00           011222 2456889


Q ss_pred             CCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       386 ~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ++||+||.+++-  ++            .+.+++.+.+.+++ |+++++.
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv  119 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLV  119 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            999999998843  22            34555666677775 5565544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.09  E-value=1.1e-06  Score=78.39  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..++..|...|++|++||+++++.+...+.+          +           ......+++ +.+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            6899999999999999999999999999999999876642211          0           011223444 55788


Q ss_pred             CCEEEEeccCC
Q 007805          388 VDMVIEAVIES  398 (589)
Q Consensus       388 aDlVIeavpe~  398 (589)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999854

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.07  E-value=8.5e-06  Score=82.90  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (589)
                      -+||+|||+|.+|.+++..++..++  +|+++|+++++++.....+....    .           ....+.. ..+.++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----P-----------FTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----H-----------hcCCeEEEECCHHH
Confidence            3689999999999999999998886  89999999887765322222110    0           0011222 245688


Q ss_pred             CCCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          385 FKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       385 ~~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +++||+||.+++-  ++            .+.+++.+.+.+++ |+++++.
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv  123 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLV  123 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEE
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            9999999998843  22            34555666677776 5555544

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.07  E-value=5.6e-07  Score=93.04  Aligned_cols=99  Identities=10%  Similarity=0.031  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.||.++|..+...|++|++||++++..               ..+             .. ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence            589999999999999999999999999999765421               011             01 1234 55789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+.++|-..+    ...-+-++..+.++++++++..+.+-.  -..+.+.+.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999996654    333222456678999998876555433  334555543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.05  E-value=8.6e-06  Score=82.30  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+....    ...  .       --.++. ++.++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----~~~--~-------~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----PFA--H-------PVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----GGS--C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----hhc--C-------CeEEEE-CCHHHhC
Confidence            48999999999999999999887  489999999887764222221110    000  0       012333 4568899


Q ss_pred             CCCEEEEecc--CC------------hHHHHHHHHHHHHhCCCCcEEEe
Q 007805          387 DVDMVIEAVI--ES------------VPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       387 ~aDlVIeavp--e~------------~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +||+||.+++  .+            ..+.+++.+.+.+++ |+++++.
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv  114 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLV  114 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEE
Confidence            9999999874  32            345556667777886 5555543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.05  E-value=6.5e-07  Score=91.51  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||++++..  +            +             ..... .++ +.+++
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hcccc-CCHHHHHhc
Confidence            689999999999999999999999999999986431  0            0             00111 234 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (589)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.  ...+.+.+.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997776544333556678999998876655533  345555554

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.00  E-value=2.3e-05  Score=73.35  Aligned_cols=144  Identities=14%  Similarity=0.114  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEE--EEcCCCC----CcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCc
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (589)
                      .++.++...+...|..++.++..+-|.  |.+.|..    ...-+|+                .....++ +.+...+.|
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~   98 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD   98 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence            489999999999999988544333333  3343311    0000111                1233566 778899999


Q ss_pred             EEEEeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCC----CCChhhh------------hhHhhhc--CHHHHH
Q 007805          101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGV----IPGFGGT------------QRLPRLV--GLSKAI  160 (589)
Q Consensus       101 ~iaav~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl----~p~~g~~------------~~l~~~~--G~~~a~  160 (589)
                      |...+-|.|.+.|.-|++++|  .|++.+++++-+-...-|.    ..+.--.            ..+.+.-  ......
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  178 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVIS  178 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999  5999999998776554333    1111000            0111121  234455


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCch
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSE  187 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~  187 (589)
                      +++-....++|+||+++||||+|++.+
T Consensus       179 ~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          179 NVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHhcCCcccCHHHHHHcCCccEeecCC
Confidence            666667779999999999999998653

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.00  E-value=3.3e-05  Score=83.82  Aligned_cols=158  Identities=16%  Similarity=0.079  Sum_probs=107.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.+...+.+.++++.+.+. .+-+|.|.-     |.|+.+.+-......  ...+.+.+.. + ..+.....|+|++
T Consensus       118 gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~~~-~-~~ls~~giP~Isv  187 (587)
T 1pix_A          118 AGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPFFR-N-AELNQLGIPVIVG  187 (587)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHHHH-H-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccc--cccHHHHHHH-H-HHHhCCCCCEEEE
Confidence            4789999999999999988865 345666654     456666543221110  0122332322 3 3477889999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeC-CceEecccc--ccCCCCChhhhhhHhhhcCHHHHHHHH-HcCCCCCHHH-------
Q 007805          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPEL--TLGVIPGFGGTQRLPRLVGLSKAIEMM-LLSKSITSEE-------  173 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~-~a~~~~pe~--~~Gl~p~~g~~~~l~~~~G~~~a~~l~-ltg~~~~a~~-------  173 (589)
                      |.|.|.|||... ..||++|+++ ++.+++.-.  --++.|        ...+|..+|.+++ .||+.+++++       
T Consensus       188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~--------~~~~d~~~A~el~~~tge~v~~e~lgga~~h  258 (587)
T 1pix_A          188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNP--------KGHVDLEYANEIADMVDRTGKTEPPGAVDIH  258 (587)
T ss_dssp             ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCS--------SSSCCHHHHHHHHHHHHTTCCCCCSSBHHHH
T ss_pred             EecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcc--------ccccchhHHHHHHHHhCCccChhhcccHHHH
Confidence            999999999999 9999998886 488876221  111111        1127899999999 9999988765       


Q ss_pred             HHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          174 GWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      +.+.|++|.++++++   .+.+.++++.+.-
T Consensus       259 ~~~~GvvD~vv~~e~---~a~~~~r~~ls~l  286 (587)
T 1pix_A          259 YTETGFMREVYASEE---GVLEGIKKYVGML  286 (587)
T ss_dssp             TTTSCCSCEEESSHH---HHHHHHHHHHHTS
T ss_pred             HhhcCceeEecCCHH---HHHHHHHHHHHhC
Confidence            236899999998775   4455555555443

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.96  E-value=1.9e-06  Score=85.69  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||.++|..|.+.|++|++||+++++.+...+.          .|             +...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence            589999999999999999999999999999998876553110          01             2233344 66789


Q ss_pred             CCEEEEeccCChHHH-HHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLK-QKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k-~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||.|+|....-. ...+.  .+.+++++++++.+.
T Consensus       187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            999999998654100 00111  245778888877666

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.95  E-value=2.5e-05  Score=66.28  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG  347 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~  347 (589)
                      +++|.|+|+|.||..++..|.+.| ++|+++|+++++++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            478999999999999999999999 9999999999887664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.95  E-value=3.2e-05  Score=71.67  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|.||..+|..|.+. |++|+++|+++++.+.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            5799999999999999999999 99999999999887664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.94  E-value=4.7e-05  Score=67.29  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=37.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~   46 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL   46 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            3689999999999999999999999999999999988765

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.93  E-value=1.7e-05  Score=70.04  Aligned_cols=83  Identities=19%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             ccceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          307 GVRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       307 ~~~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      ..++|+|||+    |.||..++..|.+.||+|+.+|++.+.+                             ..+....++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~   63 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSV   63 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSG
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCH
Confidence            3478999999    9999999999999999855555542111                             123444555


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                       +..+.+|+||.++|  .+...+++.++.+ ...+.++..
T Consensus        64 ~el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~~  100 (138)
T 1y81_A           64 RELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWFQ  100 (138)
T ss_dssp             GGSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             HHhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEEc
Confidence             44567999999999  5666777777665 455666543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.93  E-value=8.9e-07  Score=90.45  Aligned_cols=101  Identities=15%  Similarity=0.019  Sum_probs=70.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      =++|+|||+|.||..+|..+...|++|++||++++..  +            +             ..+.. .++ +.++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~  197 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCTQ-VSLDEVLE  197 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCEE-CCHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hcccc-CCHHHHHh
Confidence            3689999999999999999999999999999986431  0            0             00111 244 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (589)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+.+-  ....+.+.+.
T Consensus       198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            9999999999765443333245667789999887655543  3344555443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.87  E-value=1.6e-05  Score=79.83  Aligned_cols=89  Identities=22%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|.+|++||+++++.+.+.           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            6899999999999999999999999999999987654421           1110          0000 1233 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||.++|...--     ++..+.++++.++++.+.
T Consensus       214 aDvVi~~~p~~~i~-----~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          214 VDVCINTIPALVVT-----ANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             CSEEEECCSSCCBC-----HHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCChHHhC-----HHHHHhcCCCCEEEEecC
Confidence            99999999854321     123345788888765543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.87  E-value=1.4e-05  Score=80.49  Aligned_cols=89  Identities=20%  Similarity=0.218  Sum_probs=61.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|..+...|++|++||+++++.+.+.           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            6899999999999999999999999999999987655421           1110          0001 1233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.++|...--     ++..+.+++++++++.+.
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEECSS
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEEEeC
Confidence            99999999953311     223355777877765543

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.82  E-value=1.6e-05  Score=70.84  Aligned_cols=101  Identities=12%  Similarity=0.023  Sum_probs=65.3

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      ++|+|||+    |.||..++..|.+.||+|+.+|++.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999866666553  111                             123344455


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhccc-CCCCcEEE
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIG  443 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~-~~~~r~ig  443 (589)
                       +....+|+|+.++|.  +...+++.++.+ ...+.+++. +++.. .++.+.. ...-+++|
T Consensus        65 ~el~~~~Dlvii~vp~--~~v~~v~~~~~~-~g~~~i~i~-~~~~~-~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRNS--EAAWGVAQEAIA-IGAKTLWLQ-LGVIN-EQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSCS--THHHHHHHHHHH-HTCCEEECC-TTCCC-HHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEEc-CChHH-HHHHHHHHHcCCEEEc
Confidence             444679999999994  445677777666 345566654 44443 3443333 33445554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.82  E-value=9.3e-05  Score=74.83  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCCc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY  382 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~  382 (589)
                      +||+|||+ |.+|.+++..|+..|  .+|+++|+++ ....+ ..        +......        ..+..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a-~d--------L~~~~~~--------~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVA-AD--------LSHIETR--------ATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHH-HH--------HTTSSSS--------CEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHH-HH--------HhccCcC--------ceEEEecCCCCH
Confidence            38999998 999999999999988  6999999997 11111 00        1111100        13443   3567


Q ss_pred             -cCCCCCCEEEEec--cCCh------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 -SEFKDVDMVIEAV--IESV------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 -~~~~~aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                       +++++||+||.++  |.+.            .+.+++.+.+.+++ |+++++.
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv  115 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICI  115 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Confidence             4699999999987  3322            55667777788887 4444443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.82  E-value=3.3e-05  Score=69.54  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      ++|.|+|+|.||..++..|...|++|+++|+++++++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            68999999999999999999999999999999887654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.80  E-value=0.00012  Score=80.62  Aligned_cols=144  Identities=17%  Similarity=0.092  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCC-CCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCccc
Q 007805           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (589)
Q Consensus        32 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~  110 (589)
                      ...++.+.|+.+..|+.++.|+|.-.    |.| +++....             ...+.+ +.+....|||||.+++ +.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~-------------~I~~~i-~~~k~~gkpvva~~~~-aa  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQ-------------YIGKAL-KEFRDSGKPVYAVGEN-YS  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHH-------------HHHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHH-------------HHHHHH-HHHHhcCCeEEEEEcc-ch
Confidence            46788999999999999999999743    122 3433221             112333 3455567999999876 67


Q ss_pred             chhhHHhhhcCEEEEeCCceEecccccc------------CCCC---------Chhhhh-----------hH--------
Q 007805          111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP---------GFGGTQ-----------RL--------  150 (589)
Q Consensus       111 GgG~~lala~D~~ia~~~a~~~~pe~~~------------Gl~p---------~~g~~~-----------~l--------  150 (589)
                      .+|+-|+.+||.+++.+.+.++...+..            |+-+         +.+-.+           .+        
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~  211 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW  211 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence            8899999999999999999888766542            2210         000000           01        


Q ss_pred             ---------hhhcCHHHHHHHHHc-------CCCCCHHHHHHcCCcceecCchHHHHHHH
Q 007805          151 ---------PRLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (589)
Q Consensus       151 ---------~~~~G~~~a~~l~lt-------g~~~~a~~A~~~Glv~~vv~~~~l~~~a~  194 (589)
                               .|-+......+++-.       +..++|++|++.||||++...+++.+...
T Consensus       212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~  271 (593)
T 3bf0_A          212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALT  271 (593)
T ss_dssp             HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                     122233333344444       79999999999999999997776655443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.75  E-value=6.2e-05  Score=66.21  Aligned_cols=98  Identities=17%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~~  385 (589)
                      +++|.|+|+|.+|..++..|...|++|+++|++++..+.+.           +.+. .     .......-...+ + .+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~~~-~-----~~~~d~~~~~~l~~~~~   68 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT-H-----AVIANATEENELLSLGI   68 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-----------TTCS-E-----EEECCTTCHHHHHTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HhCC-E-----EEEeCCCCHHHHHhcCC
Confidence            46799999999999999999999999999999987765421           1110 0     000000000011 1 25


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      .++|+||.+++.+......+. .......++.+++..+
T Consensus        69 ~~~d~vi~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~~  105 (144)
T 2hmt_A           69 RNFEYVIVAIGANIQASTLTT-LLLKELDIPNIWVKAQ  105 (144)
T ss_dssp             GGCSEEEECCCSCHHHHHHHH-HHHHHTTCSEEEEECC
T ss_pred             CCCCEEEECCCCchHHHHHHH-HHHHHcCCCeEEEEeC
Confidence            789999999987644333333 3333345555555433

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.73  E-value=8.2e-05  Score=74.87  Aligned_cols=98  Identities=19%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCC--eEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      +||+|+| +|.+|.+++..|+..|+  ++.++|+  ++++++.....+....    ..+.         --.++. ++.+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~----~~~~---------~~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AYDS---------NTRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TTTC---------CCEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHH----hhCC---------CcEEEe-CCHH
Confidence            4899999 99999999999998886  7999999  8766543212221111    0000         011222 3468


Q ss_pred             CCCCCCEEEEecc--CCh------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805          384 EFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       384 ~~~~aDlVIeavp--e~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ++++||+||.+..  .+.            ...+++.+.+.++. +++++..
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv  117 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT  117 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE
Confidence            8999999998873  222            34556666677765 4555543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.72  E-value=7.8e-05  Score=75.85  Aligned_cols=102  Identities=18%  Similarity=0.259  Sum_probs=65.0

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCC
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (589)
                      .+||+|+| +|.+|.+++..|+..|  ++|+++|++++ ...+. .        +......        ..+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~-d--------L~~~~~~--------~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTA-D--------ISHMDTG--------AVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHH-H--------HHTSCSS--------CEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHH-H--------hhccccc--------ceEEEEeCCCC
Confidence            36899999 7999999999999998  79999999876 11110 0        1111000        12222   345


Q ss_pred             c-cCCCCCCEEEEecc--CCh------------HHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          382 Y-SEFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       382 ~-~~~~~aDlVIeavp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      + +++++||+||.+++  .+.            ...+++.+.+.++. ++.++...  +-|+..
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~--SNPv~~  130 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLI--SNPVNS  130 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEEC--CSSHHH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEE--CCchHH
Confidence            5 67899999999874  221            45566667777777 45555432  344444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.70  E-value=5e-05  Score=74.84  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (589)
                      +|+|||+|.||.+++..|.+.|++|+++|+++++.+...+.+          +             .. .+++ +. +++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~  172 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA  172 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence            799999999999999999999999999999988766542211          1             01 2344 45 889


Q ss_pred             CEEEEeccCC
Q 007805          389 DMVIEAVIES  398 (589)
Q Consensus       389 DlVIeavpe~  398 (589)
                      |+||.|+|..
T Consensus       173 Divi~~tp~~  182 (263)
T 2d5c_A          173 RLLVNATRVG  182 (263)
T ss_dssp             SEEEECSSTT
T ss_pred             CEEEEccCCC
Confidence            9999999855

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.67  E-value=0.00037  Score=71.64  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +.+.||+|||+|.||..++..+.+.  +++|+ ++|+++++++...++                      . .+...+++
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------------------~-~~~~~~~~   67 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------------------T-GARGHASL   67 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------------------H-CCEEESCH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------------------c-CCceeCCH
Confidence            3457899999999999999999887  77765 899999987764321                      1 13455666


Q ss_pred             -cCCC--CCCEEEEeccCChH
Q 007805          383 -SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       383 -~~~~--~aDlVIeavpe~~~  400 (589)
                       +.++  ++|+|++|+|....
T Consensus        68 ~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           68 TDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             HHHHHHCCCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEECCCcHHH
Confidence             4444  89999999996553

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.65  E-value=2.6e-05  Score=83.04  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+           ...|             ... .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-----------~~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-----------AMEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-----------HTTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-----------HHcC-------------CEe-CCHHHHHhc
Confidence            689999999999999999999999999999998764222           1111             111 234 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+|+.++...--+    -.+..+.++++++|+..+++
T Consensus       333 aDiVi~~~~t~~lI----~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATGNYHVI----NHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSSSSCSB----CHHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCCccccc----CHHHHhhCCCCcEEEEcCCC
Confidence            99999998322111    13455678999998766654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.63  E-value=2.1e-05  Score=83.42  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+           ...|             +.. .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-----------~~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------VMEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------HTTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-----------HHcC-------------CEe-cCHHHHHhc
Confidence            689999999999999999999999999999998764332           1112             111 234 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC---CCHHHHhc
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGE  433 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~  433 (589)
                      ||+||.+.. ...+   +-.+..+.++++++|+..+++   +....+.+
T Consensus       313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999963 2221   113445568999998766554   23445544

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.58  E-value=0.00015  Score=76.03  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             cceEEEEcCCCC-cHHHHHHHHh--C---CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          308 VRKVAVIGGGLM-GSGIATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       308 ~~kI~IIG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      .+||+|||+|.. +.++...|+.  .   +.+|+++|+++++++.+.. +...+   ....           .+++.++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~-~~~~~---~~~~-----------~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKRL---VKDR-----------FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHHH---HTTS-----------SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH-HHHHH---hhCC-----------eEEEEeCC
Confidence            368999999985 2222234454  3   4589999999998776322 22111   1100           24666778


Q ss_pred             c-cCCCCCCEEEEec
Q 007805          382 Y-SEFKDVDMVIEAV  395 (589)
Q Consensus       382 ~-~~~~~aDlVIeav  395 (589)
                      + +++++||+||+++
T Consensus        67 ~~~al~~AD~Viita   81 (417)
T 1up7_A           67 FEGAVVDAKYVIFQF   81 (417)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCEEEEcC
Confidence            7 8899999999998

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.58  E-value=0.00032  Score=66.84  Aligned_cols=95  Identities=16%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||.|+|+|.+|..+|..|.+.|++|+++|+++++++...+..    ...+-.|.. +++...           ...+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~-----------~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILR-----------DAEVSK   65 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHH-----------HHTCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHH-----------hcCccc
Confidence            3799999999999999999999999999999999877642210    000001111 110000           023789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEE
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA  420 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~  420 (589)
                      ||+||.+++++.  ...+...+... .+...+++
T Consensus        66 ad~vi~~~~~d~--~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           66 NDVVVILTPRDE--VNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TCEEEECCSCHH--HHHHHHHHHHHTSCCCEEEE
T ss_pred             CCEEEEecCCcH--HHHHHHHHHHHHcCCCeEEE
Confidence            999999998654  23444444444 45555554

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.57  E-value=8.9e-05  Score=76.06  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.||..++..+.. . ..+|++||+++++.++..+.+..      ..| +          .+...+++ +++
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g-~----------~~~~~~~~~eav  192 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-L----------TIRRASSVAEAV  192 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-C----------EEEECSSHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccC-c----------eEEEeCCHHHHH
Confidence            579999999999999988754 3 46899999999988775432210      001 0          12334555 667


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+||.|+|...  ...++.  .+.++++++|...++
T Consensus       193 ~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          193 KGVDIITTVTADKA--YATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             TTCSEEEECCCCSS--EEEEEC--GGGCCTTCEEEECSC
T ss_pred             hcCCEEEEeccCCC--CCceec--HHHcCCCCEEEECCC
Confidence            89999999999641  001111  245778887766554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.55  E-value=9.1e-05  Score=79.07  Aligned_cols=87  Identities=25%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.+           .|.             .. .++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence            68999999999999999999999999999999988766421           221             11 122 45678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||+|++..--+.    .+..+.++++++++..+.
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCC
Confidence            999999987543222    244556889988865444

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.55  E-value=0.00012  Score=74.51  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCC----hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  376 (589)
                      +||+|+|+ |.+|.+++..|+..|+       +|+++|++    +++++.-...        +......      ....+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d--------l~~~~~~------~~~~i   71 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME--------IDDCAFP------LLAGM   71 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH--------HHTTTCT------TEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH--------Hhhhccc------ccCcE
Confidence            58999998 9999999999999886       89999999    5444321111        1111000      11345


Q ss_pred             cccCCc-cCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          377 KGVLDY-SEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ..+++. +++++||+||.+..  .            +..+.+++.+.+.+++.++++++..|
T Consensus        72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            555665 77999999998763  2            12345566677888875666554333

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.54  E-value=5.9e-05  Score=76.83  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      =++|||||.|.+|..+|..+...|.+|+.||+.+.....             +.+             .. ..++ +.++
T Consensus       141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~  193 (334)
T 3kb6_A          141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLK  193 (334)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHH
T ss_pred             CcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHh
Confidence            368999999999999999999999999999987543211             011             11 2234 5688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      .||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-..+.+.+.
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHH
Confidence            999999999977765443435566678999988644333  33345555554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.53  E-value=0.00018  Score=72.53  Aligned_cols=98  Identities=12%  Similarity=-0.025  Sum_probs=62.6

Q ss_pred             CccceEEEEcCCCCcHH-HHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      |.+.||+|||+|.||.. ++..+.+ .+++++ ++|+++++++...+..                      + +...+++
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------------------~-~~~~~~~   60 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----------------------R-IMPFDSI   60 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----------------------T-CCBCSCH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------------------C-CCCcCCH
Confidence            34578999999999997 8888876 467877 8999999877643211                      1 1224555


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCc-EEEecCCCCCHHHH
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV  431 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~~  431 (589)
                       +.++++|+|++|+|....  .++..+..+   .+. +++.-..+...++.
T Consensus        61 ~~ll~~~D~V~i~tp~~~h--~~~~~~al~---~gk~vl~EKP~~~~~~~~  106 (308)
T 3uuw_A           61 ESLAKKCDCIFLHSSTETH--YEIIKILLN---LGVHVYVDKPLASTVSQG  106 (308)
T ss_dssp             HHHHTTCSEEEECCCGGGH--HHHHHHHHH---TTCEEEECSSSSSSHHHH
T ss_pred             HHHHhcCCEEEEeCCcHhH--HHHHHHHHH---CCCcEEEcCCCCCCHHHH
Confidence             456699999999996554  344343332   232 44443445555443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.52  E-value=4.6e-05  Score=79.40  Aligned_cols=87  Identities=20%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.||.++|..+...|.+|+++|+++.....+.           ..|             ... .++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~~-~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQV-LLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Cee-cCHHHHHhh
Confidence            6899999999999999999999999999999987654431           111             111 244 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||.+....--+.    .+..+.++++++|+..+.
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECSS
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeCC
Confidence            999998764322111    234556889998865543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.49  E-value=9.8e-05  Score=71.46  Aligned_cols=78  Identities=22%  Similarity=0.194  Sum_probs=53.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-C
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K  386 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~-~  386 (589)
                      ||+|||+|.||..++..+.+.|++| .+||+++. .+.                               ..+++ +.+ .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~   49 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR   49 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence            7999999999999999999899997 69998842 100                               23344 334 6


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++|+||+|+|.+  .-.++.   ...+..+..+++.++
T Consensus        50 ~~DvVv~~~~~~--~~~~~~---~~~l~~G~~vv~~~~   82 (236)
T 2dc1_A           50 EMDVAVEAASQQ--AVKDYA---EKILKAGIDLIVLST   82 (236)
T ss_dssp             CCSEEEECSCHH--HHHHHH---HHHHHTTCEEEESCG
T ss_pred             CCCEEEECCCHH--HHHHHH---HHHHHCCCcEEEECc
Confidence            899999999843  222333   334445666655543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.49  E-value=0.00024  Score=68.76  Aligned_cols=88  Identities=20%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .|.||+|+|+|.||..++..+.+.+.+++ ++|++++.                .             ..+..+++++.+
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l   52 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADV   52 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHH
Confidence            46799999999999999999998876765 47887651                0             123455666443


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      .++|+||++.+  ++..   ...+.  +..+.-+++.|++++.++
T Consensus        53 ~~~DVvIDft~--p~a~---~~~~~--l~~g~~vVigTTG~s~e~   90 (243)
T 3qy9_A           53 KGADVAIDFSN--PNLL---FPLLD--EDFHLPLVVATTGEKEKL   90 (243)
T ss_dssp             TTCSEEEECSC--HHHH---HHHHT--SCCCCCEEECCCSSHHHH
T ss_pred             hCCCEEEEeCC--hHHH---HHHHH--HhcCCceEeCCCCCCHHH
Confidence            39999998764  3322   22232  566665666777776543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.46  E-value=0.00031  Score=71.58  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=63.0

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .+.||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+.                      .+.....+++ +
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~   61 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------------------LAIPVAYGSYEE   61 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------------------TTCCCCBSSHHH
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------------------cCCCceeCCHHH
Confidence            446899999999999999999885 67776 789999887664221                      1111345555 4


Q ss_pred             CCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      .++  ++|+|++|+|.....  ++..+..+.  ...+++.-..+...++.
T Consensus        62 ll~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~e~  107 (330)
T 3e9m_A           62 LCKDETIDIIYIPTYNQGHY--SAAKLALSQ--GKPVLLEKPFTLNAAEA  107 (330)
T ss_dssp             HHHCTTCSEEEECCCGGGHH--HHHHHHHHT--TCCEEECSSCCSSHHHH
T ss_pred             HhcCCCCCEEEEcCCCHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            444  799999999966543  333333322  12355544445555443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.46  E-value=0.00037  Score=71.32  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+                      ..+ ....+++ +.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------------------ANG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------------------TTT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------------------HcC-CceeCCHHHH
Confidence            46899999999999999999886 77766 89999988765321                      111 3445666 45


Q ss_pred             CC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      ++  ++|+|++|+|.....  ++.....+.  ...+++....+....+
T Consensus        61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~  104 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEM  104 (344)
T ss_dssp             TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred             hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHH
Confidence            55  799999999965543  333333322  1235554444555544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.43  E-value=0.00019  Score=72.87  Aligned_cols=70  Identities=17%  Similarity=0.020  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.||..++..++. . ..+|.+||+++++.++..+++..       .+ +          .+. .+++ +++
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            579999999999999999887 3 46899999999988876443221       01 0          123 4455 667


Q ss_pred             CCCCEEEEeccCC
Q 007805          386 KDVDMVIEAVIES  398 (589)
Q Consensus       386 ~~aDlVIeavpe~  398 (589)
                       ++|+||.|+|..
T Consensus       187 -~aDvVi~aTp~~  198 (322)
T 1omo_A          187 -RCDVLVTTTPSR  198 (322)
T ss_dssp             -SSSEEEECCCCS
T ss_pred             -CCCEEEEeeCCC
Confidence             999999999853

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.42  E-value=0.00029  Score=70.94  Aligned_cols=96  Identities=19%  Similarity=0.279  Sum_probs=60.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhC-C--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCC
Q 007805          309 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (589)
                      +||+||| +|.+|.++|..|+.. +  .+++++|+++ .++ +..     ++  +.....        ...++.   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~-G~a-----~D--l~~~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP-GVA-----VD--LSHIPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH-HHH-----HH--HHTSCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch-hHH-----HH--hhCCCC--------CceEEEecCCCc
Confidence            4899999 899999999999875 5  4899999997 322 111     00  111110        012322   245


Q ss_pred             ccCCCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       382 ~~~~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      ++++++||+||.+...              +..+.+++.+.+.+++ |+++++..
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvv  117 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGII  117 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEe
Confidence            6889999999998732              2234455556677776 45555443

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.41  E-value=0.0038  Score=61.60  Aligned_cols=154  Identities=14%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             EEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHH
Q 007805           15 VAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN   92 (589)
Q Consensus        15 v~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   92 (589)
                      |+++ -|++.  .-+++....+.+.++++.+.+. .+-+|.|.-.|++     -.++  ....   ...+.+.. ..+ .
T Consensus       123 V~v~-a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgGa-----r~qE--Gi~s---l~q~aki~-~~l-~  188 (285)
T 2f9i_B          123 FGVA-VMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGGA-----RMQE--GIIS---LMQMGKTS-VSL-K  188 (285)
T ss_dssp             EEEE-EECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECSC-----CGGG--HHHH---HHHHHHHH-HHH-H
T ss_pred             EEEE-EEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----chhh--hhhh---HhHHHHHH-HHH-H
Confidence            4434 44553  3789999999999999998865 4567777654432     2221  0000   00111111 233 4


Q ss_pred             HHHhCCCcEEEEeCCcccchhhHH-hhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCH
Q 007805           93 LIEDCKKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS  171 (589)
Q Consensus        93 ~l~~~~kp~iaav~G~a~GgG~~l-ala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a  171 (589)
                      ++.....|.|+.+-|.|.||+... ++.+|+++|.++|.+++.-..       +..+.+-+.+.          -..-+|
T Consensus       189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-------vi~~~~~~~~~----------e~~~~A  251 (285)
T 2f9i_B          189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-------VIEQTINEKLP----------DDFQTA  251 (285)
T ss_dssp             HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-------HHHHHHTSCCC----------TTTTBH
T ss_pred             HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-------HHHHHhcccch----------HhHhhH
Confidence            466789999999999999999654 889999999999887752221       11121211111          111257


Q ss_pred             HHHHHcCCcceecCchHHHHHHHHHHHH
Q 007805          172 EEGWKLGLIDAVVTSEELLKVSRLWALD  199 (589)
Q Consensus       172 ~~A~~~Glv~~vv~~~~l~~~a~~~a~~  199 (589)
                      +.+.+.|+||.|++++++.+...++...
T Consensus       252 e~~~~~G~iD~Iv~~~e~r~~l~~~L~~  279 (285)
T 2f9i_B          252 EFLLEHGQLDKVVHRNDMRQTLSEILKI  279 (285)
T ss_dssp             HHHHHTTCCSEECCGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCccEEeChHHHHHHHHHHHHH
Confidence            7788999999999988877666655543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.40  E-value=0.00039  Score=72.25  Aligned_cols=88  Identities=20%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++.+...+.           ..|             .. ..++ +.++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~-v~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FR-LVKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CE-eccHHHHHhc
Confidence            6899999999999999999999999999999987654431           111             11 1233 66889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +|+||.| +....+.   -.+....++++++++..+.+
T Consensus       276 ADIVi~a-tgt~~lI---~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          276 VDIVITC-TGNKNVV---TREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             CSEEEEC-SSCSCSB---CHHHHHHSCTTEEEEECSST
T ss_pred             CCEEEEC-CCCcccC---CHHHHHhcCCCcEEEEecCC
Confidence            9999997 4333221   12344568899887654433

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.39  E-value=9.8e-05  Score=74.54  Aligned_cols=91  Identities=14%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++|+|||+|.||..++..+...  ..+|++||++  +.++..+++...+      |           -.+... ++ +++
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g-----------~~~~~~-~~~eav  181 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------G-----------VPARMA-APADIA  181 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------T-----------SCEEEC-CHHHHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------C-----------CeEEEe-CHHHHH
Confidence            6799999999999999998763  3589999999  3333322222110      1           012233 55 668


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ++||+||.|+|....    ++.  .+.++++++|.+..|.
T Consensus       182 ~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          182 AQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCCS
T ss_pred             hhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCCC
Confidence            899999999985422    222  3467888888766554

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.38  E-value=0.00023  Score=73.41  Aligned_cols=186  Identities=11%  Similarity=0.019  Sum_probs=105.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|+|||.|.-|.+-|..|..+|++|++--|.....+..     +.+.+..+.             .+...+-.++++.|
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~-------------Gf~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATEN-------------GFKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHT-------------TCEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHC-------------CCEecCHHHHHHhC
Confidence            789999999999999999999999998776633211110     001111222             23444333889999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCC--CcEEEecCCCCC----------CCCCee
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQ--DRIIGAHFFSPA----------HVMPLL  456 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~--~r~ig~h~~~p~----------~~~~lv  456 (589)
                      |+|+.-+|+..  -.+++++|.++++++..+.- +.+..+..  .....|  ..++-+-|-.|-          .-.|.+
T Consensus       100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l  174 (491)
T 3ulk_A          100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL  174 (491)
T ss_dssp             SEEEECSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEeCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence            99999999654  45788999999999988753 33443321  111112  123333332111          112222


Q ss_pred             eEe-cCCCCCHHHHHHHHHHHHHcCCe---eEEE--cC-C-CCccccc-ccHHHH----HHHH-HHHHcCCCHHH
Q 007805          457 EIV-RTERTSAQVILDLMTVGKIIKKV---PVVV--GN-C-TGFAVNR-AFFPYS----QSAR-LLVSLGVDVFR  517 (589)
Q Consensus       457 eiv-~~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d-~-~Gfi~nR-i~~~~~----~Ea~-~l~~~Gv~~~~  517 (589)
                      .-| +....+-.+.+.+..+...+|..   ++-+  .+ . .-.+.-+ +++..+    ..++ .+++.|.+|+.
T Consensus       175 iAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~  249 (491)
T 3ulk_A          175 IAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAY  249 (491)
T ss_dssp             EEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            222 11223445667788888888853   2222  11 1 1122222 343333    3345 56688998853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.37  E-value=0.00011  Score=75.62  Aligned_cols=105  Identities=12%  Similarity=0.108  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHh--------cCC---CCHHHHHHHhhccc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT--------RGK---LTQDKANNALKMLK  377 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--------~g~---~~~~~~~~~~~~i~  377 (589)
                      .||+|||+|.||..+|..+...|.+|+++|+++++++.+.+ +..   +++.        .+.   ++++....      
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lGa---~~~~l~~~~~~~~gya~~~~~~~~~~------  254 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VGA---QWLDLGIDAAGEGGYARELSEAERAQ------  254 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TTC---EECCCC-------------CHHHHHH------
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC---eEEeccccccccccchhhhhHHHHhh------
Confidence            68999999999999999999999999999999998877532 100   0000        000   01111000      


Q ss_pred             ccCCc-cCCCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          378 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       378 ~~~~~-~~~~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ...++ +.++++|+||.++  |....- .-+.++..+.++++.+|++.+.
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETTG
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEeC
Confidence            01123 5679999999986  432110 0122455667889999887653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.33  E-value=0.00028  Score=73.50  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------cee-ccHHHHHhh
Confidence            6899999999999999999999999999999987644321           111             111 233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+|+.+....--+    -.+....++++++++ |++
T Consensus       303 ADIVv~atgt~~lI----~~e~l~~MK~GAILI-NvG  334 (464)
T 3n58_A          303 ADIVVTTTGNKDVI----TIDHMRKMKDMCIVG-NIG  334 (464)
T ss_dssp             CSEEEECCSSSSSB----CHHHHHHSCTTEEEE-ECS
T ss_pred             CCEEEECCCCcccc----CHHHHhcCCCCeEEE-EcC
Confidence            99999987532211    134455689999886 444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.33  E-value=0.0011  Score=59.21  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=33.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC-hHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~  346 (589)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999998 455444

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.32  E-value=0.00036  Score=74.53  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             ceEEEEcCCCCcHH--HHHHHHh----C--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          309 RKVAVIGGGLMGSG--IATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~mG~~--iA~~l~~----~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      .||+|||+|..|..  +...++.    .  +.+|+++|+++++++.....++..... .  |         .--.++.++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~-~--~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE-L--N---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH-H--T---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH-c--C---------CCeEEEEeC
Confidence            47999999998754  2222332    2  347999999999887643333322211 1  1         012467788


Q ss_pred             Cc-cCCCCCCEEEEec
Q 007805          381 DY-SEFKDVDMVIEAV  395 (589)
Q Consensus       381 ~~-~~~~~aDlVIeav  395 (589)
                      |. +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            88 7799999999986

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.30  E-value=0.00011  Score=76.28  Aligned_cols=99  Identities=19%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||+|.||..+|..+...|.+|+++|+++++++.+.+..          |.-.       .-......++ +.++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~-------~~~~~~~~~l~~~l~  230 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRI-------HTRYSSAYELEGAVK  230 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSS-------EEEECCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCee-------EeccCCHHHHHHHHc
Confidence            36899999999999999999999999999999998877653211          1000       0000000111 3456


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ++|+||+|++.... ...-+.++..+.++++.+|+..+
T Consensus       231 ~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            89999998842221 11111344456678888776554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.30  E-value=0.00037  Score=70.53  Aligned_cols=71  Identities=10%  Similarity=-0.018  Sum_probs=49.7

Q ss_pred             ccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      .+.||+|||+|.||.. ++..+.+. +++|+ ++|+++++.+...+..          |             +...++++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~~   60 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSLS   60 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcHH
Confidence            3468999999999997 88888764 77876 9999998766532210          1             12334443


Q ss_pred             CC-CCCCEEEEeccCChH
Q 007805          384 EF-KDVDMVIEAVIESVP  400 (589)
Q Consensus       384 ~~-~~aDlVIeavpe~~~  400 (589)
                      .+ .++|+|++|+|....
T Consensus        61 ~l~~~~D~V~i~tp~~~h   78 (319)
T 1tlt_A           61 SLAASCDAVFVHSSTASH   78 (319)
T ss_dssp             HHHTTCSEEEECSCTTHH
T ss_pred             HhhcCCCEEEEeCCchhH
Confidence            33 679999999996654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.29  E-value=0.0006  Score=70.06  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .+...+++ +.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHH
Confidence            35899999999999999999887 78855 8899998876642211                       12234555 44


Q ss_pred             C--CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      +  .++|+|++|+|.....  ++..+..+.  ...+++.-..+...++.
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCARS--GKHIYVEKPISVSLDHA  106 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHHc--CCEEEEccCCCCCHHHH
Confidence            5  5799999999976643  333332221  22355544445555443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.00067  Score=69.01  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+.                      . .+. .+++ +.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~-~~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------------------Y-GCE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------------------T-TCE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------------------h-CCC-cCCHHHH
Confidence            46899999999999999999885 77876 799999887664221                      0 122 4455 44


Q ss_pred             CC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      ++  ++|+|++|+|.....  ++..+..+.  ...+++.-..+....+.
T Consensus        59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~  103 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAERV  103 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHHH
Confidence            44  799999999965543  333333322  22344444445555543

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.27  E-value=0.0056  Score=65.49  Aligned_cols=146  Identities=12%  Similarity=0.082  Sum_probs=97.0

Q ss_pred             EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 007805           17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (589)
Q Consensus        17 ~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (589)
                      .|.-+.+.  .-++.....+.+.++++.+.+. .+-+|.|.-.|     |+-+++-        ...+.... ..+ ..+
T Consensus       100 ~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-----GaRmqEg--------~~~l~~~~-~i~-~~~  163 (530)
T 3iav_A          100 AVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEG--------VASLGAYG-EIF-RRN  163 (530)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGT--------HHHHHHHH-HHH-HHH
T ss_pred             EEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhh--------hhhHHHHH-HHH-HHH
Confidence            33344553  4899999999999999998865 45677776543     4444321        00111111 222 112


Q ss_pred             H--hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCH
Q 007805           95 E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS  171 (589)
Q Consensus        95 ~--~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a  171 (589)
                      .  .-..|+|++|.|.|.|||......||++|++++ +.+++.                    |+....  ..+|+.+++
T Consensus       164 ~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~v~~  221 (530)
T 3iav_A          164 THASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGF  221 (530)
T ss_dssp             HHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCH
T ss_pred             HHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCcCCh
Confidence            2  224999999999999999998889999999875 877763                    222111  267889999


Q ss_pred             HHH-------HHcCCcceecCch-HHHHHHHHHHHHH
Q 007805          172 EEG-------WKLGLIDAVVTSE-ELLKVSRLWALDI  200 (589)
Q Consensus       172 ~~A-------~~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (589)
                      ++.       ...|++|.+++++ +..+.++++...+
T Consensus       222 e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          222 EELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             hhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence            876       5799999999775 4666666666555

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.27  E-value=0.00091  Score=67.76  Aligned_cols=69  Identities=20%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-ccCCccCC
Q 007805          309 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~-~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~  385 (589)
                      .||+|||+|.||. .++..+.+. +++|+++|+++++++...++          .|            .-. +.++.+.+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g------------~~~~~~~~~~~l   60 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL   60 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cC------------CCccccCHHHHh
Confidence            5899999999998 488888764 77888999999887654221          01            111 23333555


Q ss_pred             -CCCCEEEEeccCCh
Q 007805          386 -KDVDMVIEAVIESV  399 (589)
Q Consensus       386 -~~aDlVIeavpe~~  399 (589)
                       .++|+|++|+|...
T Consensus        61 ~~~~D~V~i~tp~~~   75 (323)
T 1xea_A           61 QYGVDAVMIHAATDV   75 (323)
T ss_dssp             GGCCSEEEECSCGGG
T ss_pred             hcCCCEEEEECCchh
Confidence             68999999999544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.26  E-value=0.00055  Score=70.04  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+.                      .+.....+++ +.+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------------------LGVEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------------------HTCSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCceeCCHHHHh
Confidence            5899999999999999998875 67766 789999887664221                      1112245555 444


Q ss_pred             C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      +  ++|+|++|+|.....  ++..+..+.  ...+++.-..+....+
T Consensus        61 ~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~e  103 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHS--ELVIACAKA--KKHVFCEKPLSLNLAD  103 (344)
T ss_dssp             HCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESCSCSCHHH
T ss_pred             cCCCCCEEEEcCCCcchH--HHHHHHHhc--CCeEEEECCCCCCHHH
Confidence            4  799999999965432  333333221  1234444333555544

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.26  E-value=0.00054  Score=69.80  Aligned_cols=103  Identities=14%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHHH--HHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYL--LKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  376 (589)
                      .--||+|+|+ |.+|.+++..++....       ++.++|+++..-  +-..-.+        ......      ....+
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL--------~~~~~~------~~~~~   88 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAEL--------EDCAFP------LLDKV   88 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HHTTCT------TEEEE
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhh--------hhcCcc------CCCcE
Confidence            3458999996 9999999999998653       799999986432  1110111        111000      11233


Q ss_pred             cccCCc-cCCCCCCEEEEec--cCC------------hHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          377 KGVLDY-SEFKDVDMVIEAV--IES------------VPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeav--pe~------------~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ..+++. +++++||+||++.  |-+            ..+.+++...|.++++++++|+..|
T Consensus        89 ~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs  150 (345)
T 4h7p_A           89 VVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG  150 (345)
T ss_dssp             EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence            445555 7799999999865  432            3345555566788888888655433

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.24  E-value=0.0011  Score=66.82  Aligned_cols=99  Identities=18%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--  381 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--  381 (589)
                      +||+|+|+ |.+|.+++..|+..|+  ++.++|+  ++++++.....+.... .  ..+.         --.+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~--~~~~---------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-A--GTRS---------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-T--TSCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-H--hcCC---------CeEEEeCCcch
Confidence            38999999 9999999999998885  7999999  7665443222222110 0  0000         012333333  


Q ss_pred             ccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          382 YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       382 ~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      .+++++||+||.+.  |.            +....+++.+.+.++.  ++++..
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv  120 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV  120 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Confidence            47899999999876  32            2234446666677777  555543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.24  E-value=0.00023  Score=73.70  Aligned_cols=98  Identities=15%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|+|+|.+|..++..+...|++|+++|+++++++.+.+..          |.--       ........++ +.+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----------g~~~-------~~~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----------GGRV-------ITLTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSE-------EEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----------CceE-------EEecCCHHHHHHHHhC
Confidence            7899999999999999999999999999999998876642211          1000       0000000111 33568


Q ss_pred             CCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +|+||.|++-... ...-+.++..+.++++.+|+..+
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            9999999973321 11112344556677777776544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.24  E-value=6.8e-05  Score=73.30  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~  346 (589)
                      +|.|||+|.||.+++..|++.|. +|++++|++++.+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            69999999999999999999998 99999999887654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.00011  Score=76.17  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC---CCHHHHHHHhhccc------cc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK---LTQDKANNALKMLK------GV  379 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~------~~  379 (589)
                      .||+|||+|.||..+|..+...|.+|+++|+++++++.+.+ +..   ..+....   -+..........++      -.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G~---~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LGA---KFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TTC---EECCCCC-----------------CHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCC---ceeecccccccccccccchhhhcchhhhhhhH
Confidence            68999999999999999999999999999999998777532 100   0000000   00000000000000      00


Q ss_pred             CCc-cCCCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          380 LDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       380 ~~~-~~~~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      .++ +.+++||+||.|+  |.+..- .-+-++..+.++++.+|++.+.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap-~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAP-RLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCC-CCBCHHHHTTSCTTCEEEETTG
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCC-EEecHHHHhcCCCCCEEEEEeC
Confidence            122 5678999999996  432110 0122455667889999987653

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.23  E-value=0.0072  Score=64.64  Aligned_cols=138  Identities=14%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHH-HHHhCCCcEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVA  103 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~kp~ia  103 (589)
                      .-++.....+.+.++++.+.+. .+-+|.|.-.     .|+.+.+-.        ..+.... +.+.+ ....-..|+|+
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~--------~sl~~~~-~i~~~~~~~s~~iP~Is  182 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGV--------DSLAGYG-EVFQRNIMASGVVPQIS  182 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTH--------HHHHHHH-HHHHHHHHTTTTSCEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCccc--------chhhhHH-HHHHHHHHHhCCCCEEE
Confidence            4799999999999999988765 3556777643     444444310        0011111 12211 11224589999


Q ss_pred             EeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-------H
Q 007805          104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W  175 (589)
Q Consensus       104 av~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-------~  175 (589)
                      +|.|.|.|||......||++|+.++ +.+++                    -|+....  ..+|+.+++++.       .
T Consensus       183 vv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~vI~--~~~ge~v~~E~LGGa~~h~~  240 (531)
T 3n6r_B          183 MIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPDVVK--TVTNEQVSAEELGGATTHTR  240 (531)
T ss_dssp             EECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHH
T ss_pred             EEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHHHHH--HHhCCccChhhcchHHHHhh
Confidence            9999999999988888999999985 66554                    1211111  257899999998       8


Q ss_pred             HcCCcceecCch-HHHHHHHHHHHH
Q 007805          176 KLGLIDAVVTSE-ELLKVSRLWALD  199 (589)
Q Consensus       176 ~~Glv~~vv~~~-~l~~~a~~~a~~  199 (589)
                      +.|++|.++++| +..+.++++...
T Consensus       241 ~sG~~d~v~~~e~~a~~~~r~lls~  265 (531)
T 3n6r_B          241 KSSVADAAFENDVEALAEVRRLVDF  265 (531)
T ss_dssp             TTSCCSEEESSHHHHHHHHHHHHTT
T ss_pred             ccCcceEEeCCHHHHHHHHHHHHHh
Confidence            899999999875 344444444433

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.22  E-value=0.00051  Score=69.37  Aligned_cols=94  Identities=20%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ...||+|||+|.||..++..+.+. ++++ .++|+++++.+...+                         .+...+++ +
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~   63 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRS   63 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHH
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHH
Confidence            346899999999999999999886 6765 599999887544210                         02334555 4


Q ss_pred             CCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCc-EEEecCCCCCHHH
Q 007805          384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (589)
                      .++  ++|+|++|+|....  .++..+.   ++.+. +++.-..+....+
T Consensus        64 ~l~~~~~D~V~i~tp~~~h--~~~~~~a---l~~Gk~v~~eKP~~~~~~~  108 (315)
T 3c1a_A           64 VVSAPEVEAVIIATPPATH--AEITLAA---IASGKAVLVEKPLTLDLAE  108 (315)
T ss_dssp             HHTCTTCCEEEEESCGGGH--HHHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred             HhhCCCCCEEEEeCChHHH--HHHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence            453  79999999995543  2443332   23343 4444344455543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.21  E-value=0.0013  Score=67.34  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             ccceEEEEcCCCCcHHHHHHHH-h-CCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      .+.||+|||+|.||..++..+. + .|++| .++|+++++++...+          +.|            .....+++ 
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g------------~~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELG------------VETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTC------------CSEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhC------------CCcccCCHH
Confidence            4568999999999999999988 5 37775 588999988765321          001            11234455 


Q ss_pred             cCCC--CCCEEEEeccCChH
Q 007805          383 SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       383 ~~~~--~aDlVIeavpe~~~  400 (589)
                      +.++  ++|+|++|+|....
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHhH
Confidence            3444  69999999995543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.21  E-value=0.00017  Score=72.37  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      ++|.|||+|.||.+++..|++.|+ +|++++|++++++..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999998 999999999887654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.21  E-value=0.00061  Score=60.12  Aligned_cols=103  Identities=11%  Similarity=0.016  Sum_probs=65.2

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ++|+|||+    |.||..++..|.+.||+  +|++||.+...                         ....+....+++.
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            57999999    89999999999999997  77777763111                         0112344455533


Q ss_pred             -CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEE
Q 007805          385 -FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  443 (589)
Q Consensus       385 -~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig  443 (589)
                       -+..|+++.++|  .+...++++++.+.-. ..++.. +++. -.++.+... ..-+++|
T Consensus        67 l~~~vDlavi~vp--~~~~~~v~~~~~~~gi-~~i~~~-~g~~-~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           67 LKEPVDILDVFRP--PSALMDHLPEVLALRP-GLVWLQ-SGIR-HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHCC-SCEEEC-TTCC-CHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEEeC--HHHHHHHHHHHHHcCC-CEEEEc-CCcC-HHHHHHHHHHcCCEEEc
Confidence             457999999999  4666677777665433 345543 3333 334433332 3345655

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.17  E-value=0.00079  Score=69.09  Aligned_cols=73  Identities=16%  Similarity=0.044  Sum_probs=51.4

Q ss_pred             CCccceEEEEcCCCCcH-HHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      +|...||+|||+|.||. .++..+.+. +++|+ ++|+++++.+...++.                       .+...++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~   80 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-----------------------GGEPVEG   80 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-----------------------CSEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCCCcCC
Confidence            34456899999999998 788888887 77876 8899998876642211                       1223355


Q ss_pred             c-cCCC--CCCEEEEeccCChH
Q 007805          382 Y-SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       382 ~-~~~~--~aDlVIeavpe~~~  400 (589)
                      + +.++  +.|+|++|+|....
T Consensus        81 ~~~ll~~~~~D~V~i~tp~~~h  102 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPLPAVLH  102 (350)
T ss_dssp             HHHHHTCTTCSEEEECCCGGGH
T ss_pred             HHHHhcCCCCCEEEECCCcHHH
Confidence            5 4443  68999999996654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.14  E-value=0.0012  Score=58.42  Aligned_cols=101  Identities=13%  Similarity=0.044  Sum_probs=64.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ++|+|||+    |.+|..++..|.+.||+  +|++|+.. +.                          ...+....++ +
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            57999999    79999999999999997  66767652 10                          0123444555 3


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEE
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  443 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig  443 (589)
                      ....+|+++.++|  .+...+++.++.+.- ...++.. + +..-.++.+... ..-+++|
T Consensus        74 l~~~vDlvvi~vp--~~~~~~vv~~~~~~g-i~~i~~~-~-g~~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           74 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVWFQ-Y-NTYNREASKKADEAGLIIVA  129 (144)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEEEC-T-TCCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEeC--HHHHHHHHHHHHHcC-CCEEEEC-C-CchHHHHHHHHHHcCCEEEc
Confidence            3457999999999  466677777766543 3355543 2 323334443332 3345555

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.09  E-value=0.00049  Score=67.60  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|.|||+|-||.+++..|++.|.+|++++|++++.+... ++          +             +... +++.+.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~~~-~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CDCF-MEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CEEE-SSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------CeEe-cHHHhccC
Confidence            5799999999999999999999999999999998876642 11          1             1111 23334589


Q ss_pred             CEEEEeccCC
Q 007805          389 DMVIEAVIES  398 (589)
Q Consensus       389 DlVIeavpe~  398 (589)
                      |+||-|+|-.
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999844

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.08  E-value=0.0018  Score=65.82  Aligned_cols=68  Identities=19%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             eEEEEcCCCCcHHH-HHHHHhCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          310 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       310 kI~IIG~G~mG~~i-A~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ||+|||+|.||..+ +..+.+.+++|+ ++|+++++.+...+.          .|            .....+++ +.++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g------------~~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NG------------IGKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TT------------CSCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cC------------CCcccCCHHHHhc
Confidence            79999999999998 777777788865 889999876653221          11            11234455 3444


Q ss_pred             --CCCEEEEeccCCh
Q 007805          387 --DVDMVIEAVIESV  399 (589)
Q Consensus       387 --~aDlVIeavpe~~  399 (589)
                        ++|+|++|+|...
T Consensus        60 ~~~~D~V~i~tp~~~   74 (332)
T 2glx_A           60 DPDVDAVYVSTTNEL   74 (332)
T ss_dssp             CTTCCEEEECSCGGG
T ss_pred             CCCCCEEEEeCChhH
Confidence              5999999999554

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.06  E-value=0.0014  Score=67.58  Aligned_cols=70  Identities=23%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ...||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.           +.             .+...+++ +
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~~   59 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYEA   59 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHHH
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHHH
Confidence            345899999999999999988876 67775 7899998765421           11             12345566 3


Q ss_pred             CCC--CCCEEEEeccCChH
Q 007805          384 EFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~  400 (589)
                      .++  +.|+|++|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A           60 VLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             HHHCTTCCEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEcCCcHHH
Confidence            343  78999999996554

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.03  E-value=0.0014  Score=67.39  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             CCccceEEEEcCCCCcHHHHHHHH-h-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-cccccC
Q 007805          305 PRGVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVL  380 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~  380 (589)
                      .|...||+|||+|.||...+..+. . .+++|+ ++|+++++++...++                      .+ .....+
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~g~~~~~~~   77 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------------------YAIEAKDYN   77 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------------------HTCCCEEES
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------------------hCCCCeeeC
Confidence            445568999999999999999998 4 377766 899999887764321                      11 133455


Q ss_pred             Cc-cCCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          381 DY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       381 ~~-~~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      ++ +.++  +.|+|++|+|.....  ++..+..+.  ..-+++--.-+...++
T Consensus        78 ~~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKPla~~~~e  126 (357)
T 3ec7_A           78 DYHDLINDKDVEVVIITASNEAHA--DVAVAALNA--NKYVFCEKPLAVTAAD  126 (357)
T ss_dssp             SHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCCEEeecCccCCHHH
Confidence            66 3343  689999999965543  443333321  1234443333455544

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.00  E-value=0.0016  Score=66.52  Aligned_cols=70  Identities=20%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-h-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-cccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~-~  383 (589)
                      .||+|||+|.||..++..+. + .+++|+ ++|+++++++...+.                      .+ .....+++ +
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------------------~g~~~~~~~~~~~   60 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------------------YQLNATVYPNDDS   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------------------TTCCCEEESSHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------------------hCCCCeeeCCHHH
Confidence            58999999999999999998 4 377766 889999887664221                      11 13445666 4


Q ss_pred             CCC--CCCEEEEeccCChH
Q 007805          384 EFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~  400 (589)
                      .++  ++|+|++|+|....
T Consensus        61 ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A           61 LLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             HHHCTTCCEEEECSCGGGH
T ss_pred             HhcCCCCCEEEECCCchhH
Confidence            444  59999999996554

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.97  E-value=0.0016  Score=65.44  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++.              .|.          . ....+++...
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~----------~-~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ----------P-FRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT----------T-SCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC----------C-cCCHHHHHhC
Confidence            45899999999999999999874 67877 79999875432              110          0 1123344333


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      .++|+||+|+|....  .++...   .+..+..+++.
T Consensus        64 ~~~DvViiatp~~~h--~~~~~~---al~aG~~Vi~e   95 (304)
T 3bio_A           64 ESVDVALVCSPSREV--ERTALE---ILKKGICTADS   95 (304)
T ss_dssp             SSCCEEEECSCHHHH--HHHHHH---HHTTTCEEEEC
T ss_pred             CCCCEEEECCCchhh--HHHHHH---HHHcCCeEEEC
Confidence            789999999984332  333333   34445544443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.96  E-value=0.02  Score=61.45  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.+...+.+.++++.+.+. .+-+|.|.-.|     |+.+.+-.....  ....+.+.+ ..+ ..+.....|+|++
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSg-----GARl~~q~~~~~--~~~~~~~i~-~~~-~~ls~~giP~Isv  203 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSG-----GANLPRQDEVFP--DREHFGRIF-FNQ-ANMSARGIPQIAV  203 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----CBCGGGGGGTSS--STTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----CCCCCCcceeec--ccccHHHHH-HHH-HHHhcCCCCEEEE
Confidence            4789999999999999998865 35567666543     333322111000  011222222 222 2366678999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeC-CceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-------HH
Q 007805          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-------~~  176 (589)
                      |.|.|.|||......||++|+.+ ++.+++           +|    |+.+      + ..+|+.+++++.       ..
T Consensus       204 v~G~~~GGga~~~a~~d~vim~e~~a~i~~-----------aG----P~vi------k-~~~ge~~~~e~LGGa~~h~~~  261 (555)
T 3u9r_B          204 VMGSCTAGGAYVPAMSDETVMVREQATIFL-----------AG----PPLV------K-AATGEVVSAEELGGADVHCKV  261 (555)
T ss_dssp             ECSCCBGGGGHHHHTSSEEEEETTTCBCBS-----------SC----HHHH------H-HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCCCccHHHHHHhCCceEEecCCceEEE-----------cc----HHHH------H-HHhcCccChhhccchhhhhhc
Confidence            99999999999999999998775 454332           11    1111      1 167899999998       78


Q ss_pred             cCCcceecCchH-HHHHHHHHHH
Q 007805          177 LGLIDAVVTSEE-LLKVSRLWAL  198 (589)
Q Consensus       177 ~Glv~~vv~~~~-l~~~a~~~a~  198 (589)
                      .|++|.++++++ ....++++..
T Consensus       262 sGv~d~v~~de~~a~~~~r~~ls  284 (555)
T 3u9r_B          262 SGVADHYAEDDDHALAIARRCVA  284 (555)
T ss_dssp             TCSCSEEESSHHHHHHHHHHHHH
T ss_pred             cCceeEEeCCHHHHHHHHHHHHH
Confidence            999999997663 2333444433

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.95  E-value=0.0016  Score=64.08  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      ++|.|||+|-||.+++..|+..|. +|++++|++++.+..
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~l  159 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL  159 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            579999999999999999999997 899999999887654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.94  E-value=0.017  Score=61.98  Aligned_cols=141  Identities=15%  Similarity=0.108  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.....+.+.++++.+.++ .+-+|.|+.     |.|+.+++-...     ...+.+.+.... + + .-..|.|++
T Consensus       108 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  173 (523)
T 1on3_A          108 GGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV-K-L-SGVVPQIAI  173 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH-H-h-cCCCCEEEE
Confidence            4799999999999999988765 455677765     445555432110     011111111111 1 2 345999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH-----HHH--Hc
Q 007805          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--KL  177 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~-----~A~--~~  177 (589)
                      +.|+|.||+......||++|+.+++.+++.                    |+.....  .+|+.++.+     +.+  +.
T Consensus       174 v~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~h~~~~  231 (523)
T 1on3_A          174 IAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADELGGAEAHMAIS  231 (523)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHTT
T ss_pred             EcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhcccHHHHhhcc
Confidence            999999999999999999999998887754                    2221111  457777764     323  58


Q ss_pred             CCcceecCch-HHHHHHHHHHHHHH
Q 007805          178 GLIDAVVTSE-ELLKVSRLWALDIA  201 (589)
Q Consensus       178 Glv~~vv~~~-~l~~~a~~~a~~la  201 (589)
                      |++|.+++++ ++.+.+.++..-+.
T Consensus       232 G~vd~vv~d~~~~~~~~r~lL~~lp  256 (523)
T 1on3_A          232 GNIHFVAEDDDAAELIAKKLLSFLP  256 (523)
T ss_dssp             CCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             CceEEEeCCHHHHHHHHHHHHHhcC
Confidence            9999999854 56666655555443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.93  E-value=0.00082  Score=68.32  Aligned_cols=99  Identities=13%  Similarity=0.057  Sum_probs=59.6

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      +.+.||+|||+|.||..++..+.+. +++|+ ++|+++++.+...           +..           +.-...+++ 
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a-----------~~~-----------~~~~~~~~~~   60 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA-----------NKY-----------HLPKAYDKLE   60 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CC-----------CCSCEESCHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------HHc-----------CCCcccCCHH
Confidence            3456899999999999999988875 45655 7899988755431           111           111245566 


Q ss_pred             cCCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCC-cEEEecCCCCCHHHH
Q 007805          383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIV  431 (589)
Q Consensus       383 ~~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~  431 (589)
                      +.++  ++|+|++|+|.....  ++.....   ..+ .+++.-.-+....+.
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGk~Vl~EKP~a~~~~e~  107 (329)
T 3evn_A           61 DMLADESIDVIYVATINQDHY--KVAKAAL---LAGKHVLVEKPFTLTYDQA  107 (329)
T ss_dssp             HHHTCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESSCCSSHHHH
T ss_pred             HHhcCCCCCEEEECCCcHHHH--HHHHHHH---HCCCeEEEccCCcCCHHHH
Confidence            4454  799999999965543  3333332   233 345444445555443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.93  E-value=0.0013  Score=67.58  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|+|+|+|.||..+|..|...|.+|+++|+++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            679999999999999999999999999999998876653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.92  E-value=0.0035  Score=65.66  Aligned_cols=39  Identities=13%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|.+|..+|..|...|++|+++|.|++.++.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~   43 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL   43 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            469999999999999999999999999999999998775

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.90  E-value=0.00097  Score=65.86  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      ++|.|+|+|.||.+++..|++.|.+|++++|++++++...
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA  159 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            6899999999999999999999999999999998876643

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.90  E-value=0.00057  Score=71.64  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      ++|+|||+|.||..++..+...|. +|+++|+++++++...+.+          |.          ..+. ..++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence            579999999999999999999998 9999999998764421111          10          0011 1122 4457


Q ss_pred             CCCEEEEeccCCh
Q 007805          387 DVDMVIEAVIESV  399 (589)
Q Consensus       387 ~aDlVIeavpe~~  399 (589)
                      ++|+||.|+|...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999997544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.89  E-value=0.00093  Score=66.22  Aligned_cols=41  Identities=10%  Similarity=0.098  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|+|+|-||.+++..|++.|. +|++++|++++.+...+
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~  168 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE  168 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence            689999999999999999999996 99999999988766533

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.88  E-value=0.0017  Score=68.66  Aligned_cols=87  Identities=18%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|.|+|+|.||.++|..|+..|.+|+++|+++.....+..           .|             ... .+. +.++.
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv-~~lee~~~~  320 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQV-LTLEDVVSE  320 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEE-CCGGGTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------Ccc-CCHHHHHHh
Confidence            67999999999999999999999999999999987665421           11             111 233 56788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+|+++....-.+.    .+..+.++++.+|+....
T Consensus       321 aDvVi~atG~~~vl~----~e~l~~mk~gaiVvNaG~  353 (488)
T 3ond_A          321 ADIFVTTTGNKDIIM----LDHMKKMKNNAIVCNIGH  353 (488)
T ss_dssp             CSEEEECSSCSCSBC----HHHHTTSCTTEEEEESSS
T ss_pred             cCEEEeCCCChhhhh----HHHHHhcCCCeEEEEcCC
Confidence            999998874322121    223456788888765443

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.86  E-value=0.0018  Score=63.92  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|.||.+++..|++.|.+|++++|++++++..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l  158 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL  158 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            679999999999999999999999999999999887654

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.84  E-value=0.024  Score=60.78  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.....+.+.++++.+.++ .+-+|.|+.     |.|+.+.+-...     ...+.+.+.+.. + + .-..|.|++
T Consensus       104 gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  169 (522)
T 1x0u_A          104 GGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV-M-A-SGVIPQITI  169 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH-H-h-CCCCcEEEE
Confidence            4799999999999999988765 456777775     455655432110     011111111111 1 2 345999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCC-c-eEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH-----HHH--
Q 007805          105 VEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--  175 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~-a-~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~-----~A~--  175 (589)
                      +.|+|.||+......||++|+.++ + .+++.                    |+....  -.+|+.++.+     +.+  
T Consensus       170 v~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~--~~~ge~~~~e~lggae~~~~  227 (522)
T 1x0u_A          170 MAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITK--VVLGEEVSFQDLGGAVVHAT  227 (522)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHH--HTTCCCCCHHHHHBHHHHHH
T ss_pred             EcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHH--HHhCCcCChhhcchHHHHhh
Confidence            999999999999999999999987 7 66651                    111111  1567777764     223  


Q ss_pred             HcCCcceecCc-hHHHHHHHHHHHHHH
Q 007805          176 KLGLIDAVVTS-EELLKVSRLWALDIA  201 (589)
Q Consensus       176 ~~Glv~~vv~~-~~l~~~a~~~a~~la  201 (589)
                      +.|++|.++++ .++.+.+.++..-+.
T Consensus       228 ~~G~~d~vv~~~~~~~~~~~~ll~~lp  254 (522)
T 1x0u_A          228 KSGVVHFMVDSEQEAINLTKRLLSYLP  254 (522)
T ss_dssp             TTCCCSEEESCHHHHHHHHHHHHHHSC
T ss_pred             cCceeEEEeCCHHHHHHHHHHHHHhcc
Confidence            58999999985 456666666665554

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.81  E-value=0.0006  Score=69.31  Aligned_cols=95  Identities=19%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCC--e-----EEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      .||+|+| +|.+|.++|..|+..|.  +     ++++|+++.  .++--...+.        .....      ....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~--------~~~~~------~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQ--------DCALP------LLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--------HTCCT------TEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhH--------hhhhc------ccCCEEE
Confidence            6899999 79999999999998876  5     999999752  2222111111        11000      0122344


Q ss_pred             cCC-ccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCc
Q 007805          379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHC  417 (589)
Q Consensus       379 ~~~-~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~  417 (589)
                      +++ ++++++||+||.+.  |.            +..+.+++...+.++.+++.
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~  123 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV  123 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            444 47899999999875  32            23455667777888887765

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.80  E-value=0.033  Score=59.91  Aligned_cols=137  Identities=15%  Similarity=0.048  Sum_probs=90.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH--hCCCcEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIV  102 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~kp~i  102 (589)
                      .-++.....+.+.++++.+.++ .+-+|.|.-     |.|+.+.+-..        .+..+. +.+ ..+.  .-..|.|
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~--------sl~~~~-~i~-~~~~~~s~~iP~I  184 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV--------SLGLYS-RIF-RNNILASGVIPQI  184 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTH--------HHHHHH-HHH-HHHHHTTTTSCEE
T ss_pred             cCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHH--------HHHHHH-HHH-HHHHHhcCCCcEE
Confidence            4799999999999999988865 456777765     45565543211        011111 222 1122  3449999


Q ss_pred             EEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH-----HHH-
Q 007805          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW-  175 (589)
Q Consensus       103 aav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~-----~A~-  175 (589)
                      +++.|+|.||+......||++|+.++ +.+++.                    |+.....  .+|+.++.+     +.+ 
T Consensus       185 svv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~  242 (548)
T 2bzr_A          185 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHM  242 (548)
T ss_dssp             EEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHH
T ss_pred             EEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHh
Confidence            99999999999988889999999986 777654                    2221111  457788764     223 


Q ss_pred             -HcCCcceecCch-HHHHHHHHHHHH
Q 007805          176 -KLGLIDAVVTSE-ELLKVSRLWALD  199 (589)
Q Consensus       176 -~~Glv~~vv~~~-~l~~~a~~~a~~  199 (589)
                       +.|++|.+++++ ++.+.+.++..-
T Consensus       243 ~~sG~~d~vv~d~~~~~~~~r~lls~  268 (548)
T 2bzr_A          243 AKSGTAHYAASGEQDAFDYVRELLSY  268 (548)
T ss_dssp             HTSSCCSEEESSHHHHHHHHHHHHTT
T ss_pred             hccCceeEEeCCHHHHHHHHHHHHHh
Confidence             689999999854 455554444433

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.78  E-value=0.0029  Score=66.34  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHH-HHHHHhhHhcCC---C-CHHHHHHH--hhccccc
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTI-EANVRGLVTRGK---L-TQDKANNA--LKMLKGV  379 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~-~~~~~~~~~~g~---~-~~~~~~~~--~~~i~~~  379 (589)
                      -||||||+|.||..++..+.+. +.+| .++|+++++.+.+.++. .       ....   . +..+....  .+....+
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG-------~~~~~~~~~~~~~i~~a~~~g~~~v~   96 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYG-------DEENAREATTESAMTRAIEAGKIAVT   96 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHS-------SSTTEEECSSHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcC-------CccccccccchhhhhhhhccCCceEE
Confidence            5799999999999999887654 5554 58899999877753321 0       0000   0 11111111  1234567


Q ss_pred             CCc-cCCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCC
Q 007805          380 LDY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM  453 (589)
Q Consensus       380 ~~~-~~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~  453 (589)
                      +|+ +.++  +.|+|++|+|.. ..-.++   ....+..+.-|++........   ++.+.......+            
T Consensus        97 ~D~eeLL~d~dIDaVviaTp~p-~~H~e~---a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv------------  160 (446)
T 3upl_A           97 DDNDLILSNPLIDVIIDATGIP-EVGAET---GIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI------------  160 (446)
T ss_dssp             SCHHHHHTCTTCCEEEECSCCH-HHHHHH---HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred             CCHHHHhcCCCCCEEEEcCCCh-HHHHHH---HHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe------------
Confidence            777 4444  689999999742 211122   222333444444322222222   222222111111            


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                          +.......+..+..+.++.+.+|..++.++
T Consensus       161 ----l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 ----YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ----EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                122222346778888899999999999985

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.76  E-value=0.0015  Score=63.65  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      ++|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999997

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.76  E-value=0.0016  Score=67.01  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             ccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      ...||+|||+|.||.. ++..+.+. +++|+ ++|+++++++...           +.           .+.....+++ 
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a-----------~~-----------~~~~~~~~~~~   61 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVH-----------RF-----------ISDIPVLDNVP   61 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGG-----------GT-----------SCSCCEESSHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------Hh-----------cCCCcccCCHH
Confidence            3468999999999985 88888775 67776 8899998866531           11           1123445666 


Q ss_pred             cCCC--CCCEEEEeccCCh
Q 007805          383 SEFK--DVDMVIEAVIESV  399 (589)
Q Consensus       383 ~~~~--~aDlVIeavpe~~  399 (589)
                      +.++  +.|+|++|+|...
T Consensus        62 ~ll~~~~vD~V~i~tp~~~   80 (359)
T 3m2t_A           62 AMLNQVPLDAVVMAGPPQL   80 (359)
T ss_dssp             HHHHHSCCSEEEECSCHHH
T ss_pred             HHhcCCCCCEEEEcCCcHH
Confidence            3343  5699999999443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.68  E-value=0.0056  Score=62.93  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.||+|||+|.||..++..+... ++++ .++|+++++.+...+.          .| +.        ......+++ +.
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~-~~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CC--------CCCeeeCCHHHH
Confidence            46899999999999999998875 5665 5889999876553221          01 00        012344555 34


Q ss_pred             CC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec-CCCCCHHH
Q 007805          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN-TSTIDLNI  430 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~-ts~~~~~~  430 (589)
                      ++  ++|+|++|+|....  .++..+   .+..+.-|.+. ..+....+
T Consensus        67 l~~~~~D~V~i~tp~~~h--~~~~~~---al~aGk~V~~EKP~a~~~~e  110 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH--VEWAIK---AAEKGKHILLEKPVAMNVTE  110 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH--HHHHHH---HHTTTCEEEECSSCSSSHHH
T ss_pred             hcCCCCCEEEEcCChHHH--HHHHHH---HHHCCCeEEEecCCcCCHHH
Confidence            43  69999999995553  233333   33445434333 23455543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.67  E-value=0.0023  Score=62.99  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      +++.|+|+|-+|.+++..|++.|. +|++++|++++.+...
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            689999999999999999999996 9999999998877653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.66  E-value=0.00023  Score=70.47  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~  346 (589)
                      ++|.|||+|-||.+++..|++.|. +|++++|++++.+.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            679999999999999999999999 99999999876544

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.64  E-value=0.0069  Score=63.95  Aligned_cols=78  Identities=15%  Similarity=0.074  Sum_probs=51.9

Q ss_pred             CCccceEEEEcCCCCcH-HHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      ++...||+|||+|.||. .++..+.+. +++| .++|+++++.+...+.          .| +..       ..+...++
T Consensus        80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~~~-------~~~~~~~~  141 (433)
T 1h6d_A           80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSN  141 (433)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSS
T ss_pred             CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CCc-------ccccccCC
Confidence            44556899999999997 899888765 5675 5899999876653221          01 000       01224556


Q ss_pred             c-cCCC--CCCEEEEeccCChH
Q 007805          382 Y-SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       382 ~-~~~~--~aDlVIeavpe~~~  400 (589)
                      + +.++  ++|+|++|+|....
T Consensus       142 ~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A          142 FDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             GGGGGGCTTCCEEEECSCGGGH
T ss_pred             HHHHhcCCCCCEEEEcCCchhH
Confidence            6 4454  79999999996554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.64  E-value=0.00068  Score=70.83  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|+|||+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999887664

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.63  E-value=0.0017  Score=64.43  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~  351 (589)
                      +++.|+|+|-+|.+++..|+..|. +|++++|++++.+...+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            689999999999999999999998 7999999999877654433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.0021  Score=66.26  Aligned_cols=68  Identities=28%  Similarity=0.286  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCC---c-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---Y-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-~  383 (589)
                      +||.|||+|.+|+.+|..|++ .++|++.|++.++++++.+.        .              ..+.. .+|   + +
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~--------~--------------~~~~~d~~d~~~l~~   73 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF--------A--------------TPLKVDASNFDKLVE   73 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT--------S--------------EEEECCTTCHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc--------C--------------CcEEEecCCHHHHHH
Confidence            479999999999999998865 58999999999887764220        0              01111 111   1 4


Q ss_pred             CCCCCCEEEEeccCCh
Q 007805          384 EFKDVDMVIEAVIESV  399 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~  399 (589)
                      .++++|+||.|+|...
T Consensus        74 ~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           74 VMKEFELVIGALPGFL   89 (365)
T ss_dssp             HHTTCSEEEECCCGGG
T ss_pred             HHhCCCEEEEecCCcc
Confidence            4689999999998543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.62  E-value=0.0059  Score=62.07  Aligned_cols=71  Identities=15%  Similarity=0.021  Sum_probs=50.6

Q ss_pred             cceEEEEcCCCCcH-HHHHHHHhCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~-~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      ..||||||+|.||. .++..+...|++| .++|+++++.+...++                      .+.....+|+ +.
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence            45899999999996 6777777778885 5899999877654221                      1123345666 44


Q ss_pred             CC--CCCEEEEeccCChH
Q 007805          385 FK--DVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~  400 (589)
                      ++  +.|+|++|+|....
T Consensus        62 l~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             HTCTTCCEEEECSCGGGH
T ss_pred             hhCCCCCEEEEeCChhhH
Confidence            44  68999999996554

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.61  E-value=0.0051  Score=63.09  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCCC--e---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNNI--Y---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-  380 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G~--~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-  380 (589)
                      ..||+||| +|.+|.++|..++..+.  +   |.++|.+.+..+...+...-.    +..+...      .+..+...+ 
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amD----L~h~~~p------~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLYP------LLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCT------TEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHh----HHhhhhh------hcCCcEEecC
Confidence            36899999 79999999999998875  3   888776544322211111100    1111100      012233333 


Q ss_pred             CccCCCCCCEEEEec--cCC------------hHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          381 DYSEFKDVDMVIEAV--IES------------VPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       381 ~~~~~~~aDlVIeav--pe~------------~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +++++++||+||.+.  |-+            ..+.+.+...+.++..++++++..|.
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            458899999999865  321            23344444556777667777765553

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.57  E-value=0.0048  Score=60.82  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      ++||.|+|+|.+|+.++..|++.|++|++.+++++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            578999999999999999999999999999999876544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.57  E-value=0.0013  Score=67.87  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|.|+|+|.+|..++..+...|.+|+++|+++++++.+.+...    ..+..-..+.             .++ +.+++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~  230 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRVELLYSNS-------------AEIETAVAE  230 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGSEEEECCH-------------HHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC----ceeEeeeCCH-------------HHHHHHHcC
Confidence            78999999999999999999999999999999998877533110    0000000010             111 34568


Q ss_pred             CCEEEEeccCChHHHHH-HHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQK-IFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~-v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|+||.|++-....... +.++..+.++++.++++.++
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            99999999532210000 12233455677777765543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.53  E-value=0.0061  Score=61.92  Aligned_cols=97  Identities=11%  Similarity=0.036  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC---Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .||+|||+|.||..++..+...+   ++ |.++|+++++.+...++                      .+.-...+++ +
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------------------HDIPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------------------HTCSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHH
Confidence            58999999999999999887654   34 55789999887664221                      1111345566 3


Q ss_pred             CCC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      .++  +.|+|++|+|.....  ++..+....  ...+++--.-+....+.
T Consensus        61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~  106 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEV  106 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHH
Confidence            343  699999999966543  333333221  12345443334555443

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.50  E-value=0.0013  Score=68.46  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999998877664

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.44  E-value=0.0038  Score=63.80  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             CccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +.|-||||||+|.||.. .+..+... +.+|+ ++|+++++++...++                      .+.-...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCCH
Confidence            45679999999999975 46666665 67766 789999987764321                      1222345666


Q ss_pred             -cCC--CCCCEEEEeccCChH
Q 007805          383 -SEF--KDVDMVIEAVIESVP  400 (589)
Q Consensus       383 -~~~--~~aDlVIeavpe~~~  400 (589)
                       +.+  .+.|+|++|+|....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCCchh
Confidence             334  468999999996554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.44  E-value=0.019  Score=58.84  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             ccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      .+.||||||+|.||.. .+..+.+. +++|+ ++|+++++...             +            .......+++ 
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~   58 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------D------------FPDAEVVHELE   58 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------H------------CTTSEEESSTH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------h------------CCCCceECCHH
Confidence            3468999999999997 56666554 67765 88999865221             0            1123455666 


Q ss_pred             cCCC--CCCEEEEeccCChHH
Q 007805          383 SEFK--DVDMVIEAVIESVPL  401 (589)
Q Consensus       383 ~~~~--~aDlVIeavpe~~~~  401 (589)
                      +.++  +.|+|++|+|.....
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A           59 EITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             HHHTCTTCCEEEECSCTTTHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH
Confidence            4444  789999999976643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.42  E-value=0.011  Score=56.12  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+... ++.           +.+.+.+.         .+...-..+.+.+
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-----------l~~~~~i~---------~i~~~~~~~dL~~   91 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-----------WEAKGQLR---------VKRKKVGEEDLLN   91 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-----------HHHTTSCE---------EECSCCCGGGSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHHcCCcE---------EEECCCCHhHhCC
Confidence            68999999999999999999999999999976432 211           22333221         0111112256889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCCCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~~t~  465 (589)
                      +|+||.|+ ++.++...+    ...++. .|.+........               ..|+.|.  ...+++.-|.+.+.+
T Consensus        92 adLVIaAT-~d~~~N~~I----~~~ak~-gi~VNvvD~p~~---------------~~f~~Paiv~rg~l~iaIST~G~s  150 (223)
T 3dfz_A           92 VFFIVVAT-NDQAVNKFV----KQHIKN-DQLVNMASSFSD---------------GNIQIPAQFSRGRLSLAISTDGAS  150 (223)
T ss_dssp             CSEEEECC-CCTHHHHHH----HHHSCT-TCEEEC-----C---------------CSEECCEEEEETTEEEEEECTTSC
T ss_pred             CCEEEECC-CCHHHHHHH----HHHHhC-CCEEEEeCCccc---------------CeEEEeeEEEeCCEEEEEECCCCC
Confidence            99999775 455554444    334553 344322211110               1122222  235666677777889


Q ss_pred             HHHHHHHHHHHHH
Q 007805          466 AQVILDLMTVGKI  478 (589)
Q Consensus       466 ~e~~~~~~~l~~~  478 (589)
                      |.....+++-++.
T Consensus       151 P~la~~iR~~ie~  163 (223)
T 3dfz_A          151 PLLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9888888877764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.41  E-value=0.00065  Score=66.88  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CccceEEEEc-CCCCcHHHHHHHHhC-CCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG-~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      |.+.||+|+| .|.||..++..+.+. +++++. +|++++...-            ...+.+.     .....+..++|+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl   67 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDI   67 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCH
Confidence            4568999999 899999999988865 677665 6887432100            0001000     000123445666


Q ss_pred             -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                       +.++++|+||++.+  ++...+.+...   +..+.-+++.|++++..+
T Consensus        68 ~~ll~~~DVVIDfT~--p~a~~~~~~~a---l~~G~~vVigTTG~s~~~  111 (272)
T 4f3y_A           68 ERVCAEADYLIDFTL--PEGTLVHLDAA---LRHDVKLVIGTTGFSEPQ  111 (272)
T ss_dssp             HHHHHHCSEEEECSC--HHHHHHHHHHH---HHHTCEEEECCCCCCHHH
T ss_pred             HHHhcCCCEEEEcCC--HHHHHHHHHHH---HHcCCCEEEECCCCCHHH
Confidence             44678999999986  44333444433   334444555666776553

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.41  E-value=0.0021  Score=65.09  Aligned_cols=92  Identities=14%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++  +.            ..             .+..++++ +.
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~~-------------gv~~~~d~~~l   55 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------KT-------------PVFDVADVDKH   55 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------SS-------------CEEEGGGGGGT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------cC-------------CCceeCCHHHH
Confidence            35799999999999999998876 5664 588988653  11            00             12334455 33


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCc-EEEecCCCCCHHHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~~  431 (589)
                      +.++|+||+|+|.....     ..+...+..+. ++++...+..+.++
T Consensus        56 l~~~DvViiatp~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           56 ADDVDVLFLCMGSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTCSEEEECSCTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             hcCCCEEEEcCCcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHH
Confidence            47899999999866532     22233344444 44444444555444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.37  E-value=0.0043  Score=61.69  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|.|+|+|-||.++|..|++.| +|+++++++++++...+.+....      +. .. ..     .+...+-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~-~~-~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NK-KF-GE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TC-CH-HH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------cc-cc-ce-----eEEEeeHHHhhCCC
Confidence            57999999999999999999999 99999999988766544332110      00 00 00     01111112557789


Q ss_pred             CEEEEecc
Q 007805          389 DMVIEAVI  396 (589)
Q Consensus       389 DlVIeavp  396 (589)
                      |+||-++|
T Consensus       195 DilVn~ag  202 (287)
T 1nvt_A          195 DIIINATP  202 (287)
T ss_dssp             CEEEECSC
T ss_pred             CEEEECCC
Confidence            99999887

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.37  E-value=0.022  Score=58.47  Aligned_cols=98  Identities=7%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             cceEEEEcCCCCcH-HHHHHHHhCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGS-GIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~-~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .-||||||+|.+|. .++..+...+++|+ ++|+++++.+...++                      .+.....+++ +.
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~l   83 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEI   83 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHH
Confidence            35899999999995 56777777888854 889999987664221                      1223455666 34


Q ss_pred             CC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (589)
                      ++  +.|+|++|+|...  -.++.....+.  ..-|++--.-+...++.
T Consensus        84 l~~~~vD~V~I~tp~~~--H~~~~~~al~a--GkhVl~EKPla~~~~ea  128 (361)
T 3u3x_A           84 LEDENIGLIVSAAVSSE--RAELAIRAMQH--GKDVLVDKPGMTSFDQL  128 (361)
T ss_dssp             HTCTTCCEEEECCCHHH--HHHHHHHHHHT--TCEEEEESCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHH--HHHHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            44  5899999999443  33443333321  22345443334455443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.35  E-value=0.0032  Score=62.23  Aligned_cols=38  Identities=16%  Similarity=0.056  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~  346 (589)
                      +++.|||+|-+|.+++..|++.|. +|++++|++++.+.
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~  161 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE  161 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            689999999999999999999998 99999999987655

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.32  E-value=0.0051  Score=58.98  Aligned_cols=96  Identities=14%  Similarity=-0.018  Sum_probs=59.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~  385 (589)
                      -++|.|+|+|.+|..+|..|.+.|+ |+++|++++.++.+..      ...+-.|..+..            ..+  ..+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~------~~~~i~gd~~~~------------~~l~~a~i   69 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRS------GANFVHGDPTRV------------SDLEKANV   69 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHT------TCEEEESCTTCH------------HHHHHTTC
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhc------CCeEEEcCCCCH------------HHHHhcCc
Confidence            3689999999999999999999999 9999999988765310      000001111000            011  237


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCC-cEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~ts  424 (589)
                      ++||.||.+++++..  ..........+.++ .|++-..+
T Consensus        70 ~~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           70 RGARAVIVDLESDSE--TIHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             TTCSEEEECCSCHHH--HHHHHHHHHHHCSSSEEEEECSS
T ss_pred             chhcEEEEcCCCcHH--HHHHHHHHHHHCCCCeEEEEECC
Confidence            899999999986532  22233334445565 56654433

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.28  E-value=0.0026  Score=67.52  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      ..++|.|+|+|.||..++..|++.|++|+++|+++++++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            3578999999999999999999999999999999877654

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.26  E-value=0.03  Score=60.04  Aligned_cols=162  Identities=14%  Similarity=0.135  Sum_probs=99.8

Q ss_pred             EeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHh
Q 007805           19 TLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED   96 (589)
Q Consensus        19 ~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   96 (589)
                      .-|+|.  .-+++++..+...++++.+++. .+-+|.|.-.+ .|..|.+-...      .    .....-..+ ..+..
T Consensus       330 ia~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~-G~~~G~~~E~~------G----~~~~~Ak~l-~~~~~  396 (522)
T 1x0u_A          330 VANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP-GYVPGTDQEYK------G----IIRHGAKML-YAFAE  396 (522)
T ss_dssp             EEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCSHHHHHT------T----HHHHHHHHH-HHHHH
T ss_pred             EEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC-CCCCchHHHHH------H----HHHHHHHHH-HHHHh
Confidence            334554  2689999999999999988754 55677775433 23333321110      0    111222344 56888


Q ss_pred             CCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-cC---------HHHHHHH
Q 007805           97 CKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VG---------LSKAIEM  162 (589)
Q Consensus        97 ~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~G---------~~~a~~l  162 (589)
                      ...|.|+.|-|.|.|||.....    .+|+++|.+++.+++-       .+-|....+-+. +-         .....++
T Consensus       397 ~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y  469 (522)
T 1x0u_A          397 ATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQRIAEY  469 (522)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHHHHHHH
T ss_pred             CCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHHHHHHH
Confidence            9999999999999999874443    4999999988877642       222322222222 11         1111100


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                        .-..-++..+.+.|+||.|+++.++.+......+.+..
T Consensus       470 --~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          470 --RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             --HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             --HHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHhh
Confidence              01124667899999999999998887766666655543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.23  E-value=0.0047  Score=61.04  Aligned_cols=75  Identities=16%  Similarity=0.161  Sum_probs=54.9

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++.|||.|. +|.++|..|...|.+|+++++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            6899999866 7999999999999999999975443320                                   022578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++-.--++.       +.+++++++++....
T Consensus       211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~  241 (300)
T 4a26_A          211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGTT  241 (300)
T ss_dssp             CSEEEECSCCTTCBCG-------GGSCTTCEEEECCCE
T ss_pred             CCEEEECCCCCCCCcH-------HhcCCCcEEEEEecc
Confidence            9999999974222222       347899998876543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.21  E-value=0.017  Score=61.21  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---  380 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---  380 (589)
                      +...||+|||+|.||...+..+... |++| .++|+++++++...+.+.       +.|.          ......+   
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~   80 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGN   80 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSST
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCC
Confidence            4456899999999999999888875 6775 588999998776533221       1110          0122333   


Q ss_pred             -Cc-cCCC--CCCEEEEeccCChH
Q 007805          381 -DY-SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       381 -~~-~~~~--~aDlVIeavpe~~~  400 (589)
                       ++ +.++  +.|+|++|+|....
T Consensus        81 ~~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           81 DDYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             TTHHHHTTCTTCCEEEECCCGGGH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcHHH
Confidence             55 4454  68999999996554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.21  E-value=0.026  Score=53.84  Aligned_cols=40  Identities=18%  Similarity=0.026  Sum_probs=35.5

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      .-++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            3468999997 999999999999999999999999887655

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.17  E-value=0.01  Score=62.01  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC---CeEEEEeCChHHHHHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~  350 (589)
                      |+||+|+|+|.+|..++..|++.|   .+|+++|+++++++...+.
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~   46 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS   46 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence            468999999999999999999998   3999999999988775443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.17  E-value=0.0049  Score=63.46  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             ccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      .+.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++..                         .......+++ 
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------------------LPDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCcEECCHH
Confidence            3468999999999997 66666655 77775 889998764320                         1123455666 


Q ss_pred             cCCC--CCCEEEEeccCChH
Q 007805          383 SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       383 ~~~~--~aDlVIeavpe~~~  400 (589)
                      +.++  +.|+|++|+|....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence            4444  78999999996554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.17  E-value=0.0092  Score=60.41  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCCCcHH-HHHHHHhCCCeEEEEeCCh
Q 007805          306 RGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~~~d~~~  341 (589)
                      +.++||.|||.|-+|.+ +|..|.+.|++|+++|.++
T Consensus         2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999996 9999999999999999875

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.16  E-value=0.0035  Score=61.18  Aligned_cols=73  Identities=14%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++.|||.| .+|.++|..|...|..|+++++....++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            689999987 5899999999999999999986533222                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++-..-++.       +.+++++++++..+.
T Consensus       194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGIN  224 (276)
T ss_dssp             SSEEEECSSCTTCBCG-------GGCCTTCEEEECCCE
T ss_pred             CCEEEECCCCCccccH-------hhccCCcEEEEeccC
Confidence            9999999974222222       357889988876653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.15  E-value=0.014  Score=55.04  Aligned_cols=39  Identities=8%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHH-hCCCeEEEEeCChH-HHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLK  346 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~-~~G~~V~~~d~~~~-~~~~  346 (589)
                      |++|.|+|+ |.+|..++..|+ +.|++|++.+++++ +++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            566999995 999999999999 89999999999988 6544

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.10  E-value=0.083  Score=56.64  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.....+.+.++++.+.+. .+-+|.|.-+|     |+-+.+-...     ...+.+.+...   .......|+|++
T Consensus       111 gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSg-----GAR~qeg~~~-----l~g~~~~~~~~---~~~s~~iP~Isv  176 (527)
T 1vrg_A          111 GGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSG-----GARIQEGVDA-----LAGYGEIFLRN---TLASGVVPQITV  176 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-----SBCGGGTHHH-----HHHHHHHHHHH---HHHTTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----CCCccchhHH-----HHHHHHHHHHH---HHhCCCCCEEEE
Confidence            4789999999999999988765 34566665433     4444321110     00111111111   123556999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH-----HHH--H
Q 007805          105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--K  176 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~-----~A~--~  176 (589)
                      |.|.|.|||......||++|+.++ +.+++                    .|+... +. .+|+.++.+     +.+  +
T Consensus       177 v~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi-~~-~~ge~v~~e~lggae~~~~~  234 (527)
T 1vrg_A          177 IAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVI-KA-VTGEEISQEDLGGAMVHNQK  234 (527)
T ss_dssp             EEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHH-HH-HHCCCCCHHHHHBHHHHHHT
T ss_pred             EeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHH-HH-HhCCCCCccccccHHHHhhc
Confidence            999999999988889999999987 66433                    121111 11 457777764     323  5


Q ss_pred             cCCcceecCch-HHHHHHHHHHHH
Q 007805          177 LGLIDAVVTSE-ELLKVSRLWALD  199 (589)
Q Consensus       177 ~Glv~~vv~~~-~l~~~a~~~a~~  199 (589)
                      .|++|.+++++ ++.+.+.++..-
T Consensus       235 ~G~vd~vv~d~~~~~~~~~~~Ls~  258 (527)
T 1vrg_A          235 SGNAHFLADNDEKAMSLVRTLLSY  258 (527)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHHTT
T ss_pred             ccceEEEecCHHHHHHHHHHHHHh
Confidence            89999999854 455555555443

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.047  Score=57.13  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             ccceEEEEcCCC---CcHHHHHHHHhCC-CeEE--EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          307 GVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       307 ~~~kI~IIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      ..-||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+...++.          | +         ......+
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g-~---------~~~~~~~   95 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------G-L---------DPSRVYS   95 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------T-C---------CGGGBCS
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------C-C---------CcccccC
Confidence            345899999999   9999888877765 6765  6799999877643321          1 0         0013455


Q ss_pred             Cc-cCCC-------CCCEEEEeccCChH
Q 007805          381 DY-SEFK-------DVDMVIEAVIESVP  400 (589)
Q Consensus       381 ~~-~~~~-------~aDlVIeavpe~~~  400 (589)
                      ++ +.++       +.|+|++|+|....
T Consensus        96 ~~~~ll~~~~~~~~~vD~V~I~tp~~~H  123 (417)
T 3v5n_A           96 DFKEMAIREAKLKNGIEAVAIVTPNHVH  123 (417)
T ss_dssp             CHHHHHHHHHHCTTCCSEEEECSCTTSH
T ss_pred             CHHHHHhcccccCCCCcEEEECCCcHHH
Confidence            65 3333       48999999997654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.08  E-value=0.0095  Score=63.35  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      +||-|+|+|.+|..+|..|...||+|+++|.|+++++.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999999987753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.06  E-value=0.0063  Score=60.13  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|. +|..+|..|...|..|+++++....+.                                     +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  208 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK  208 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence            6899999995 699999999999999999985532221                                     44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++-.--++.       +.++++++|++....
T Consensus       209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGIN  239 (301)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCCB
T ss_pred             CCEEEECCCCcccCCH-------HHcCCCcEEEEccCC
Confidence            9999999974221222       346789999876654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.06  E-value=0.022  Score=57.86  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHH-HHHhhcccccCCc-
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-  382 (589)
                      |.||||+|+|.+|..++..+..+ +++|+ +.|.+++......+.     +...-.|.. ..... ...-+.+....+. 
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchH
Confidence            35899999999999999998876 56765 557766655443221     000011221 11111 1111223333333 


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +.+.++|+|++|.|.....  +...  ..+++.++.++++.+.
T Consensus        77 ~~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GTGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTTS
T ss_pred             HhccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCCc
Confidence            3457999999999854422  2211  3566777766665543

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.02  E-value=0.0094  Score=58.69  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ..||+|+|+ |.||..++..+.. .|++|+ ++|++++....            ...+.+..  .  ....+..++++ +
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g------------~d~~~~~g--~--~~~~v~~~~dl~~   68 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG--A--GKTGVTVQSSLDA   68 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS--S--SCCSCCEESCSTT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhh------------hhHHHHcC--C--CcCCceecCCHHH
Confidence            358999998 9999999998774 578877 78887643100            00000000  0  00012335566 5


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      .++++|+||++.+  ++.-.+....   .+..+.-+++.|+++..++
T Consensus        69 ~l~~~DvVIDft~--p~~~~~~~~~---a~~~G~~vVigTtG~~~e~  110 (273)
T 1dih_A           69 VKDDFDVFIDFTR--PEGTLNHLAF---CRQHGKGMVIGTTGFDEAG  110 (273)
T ss_dssp             TTTSCSEEEECSC--HHHHHHHHHH---HHHTTCEEEECCCCCCHHH
T ss_pred             HhcCCCEEEEcCC--hHHHHHHHHH---HHhCCCCEEEECCCCCHHH
Confidence            5678999998775  4433333333   3334444555555666653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.95  E-value=0.0091  Score=59.98  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC---hHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~  349 (589)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~  199 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE  199 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence            689999999999999999999998 89999999   666665443

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=95.94  E-value=0.054  Score=52.23  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             cccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH---hcccCCC-CcEEEecCCCC
Q 007805          375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV---GEKTSSQ-DRIIGAHFFSP  449 (589)
Q Consensus       375 ~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~---~~~~~~~-~r~ig~h~~~p  449 (589)
                      .+..++|- ++++++|++|.-+|--- ...++.+++.+++++++||+ ||-+++...+   .+.+.+. -.+..+||-.-
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV  205 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCV  205 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence            34555554 99999999999998522 24488899999999999875 5555555433   3334433 34666777544


Q ss_pred             CCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      |-.. .-......-.++|.++++.++.+..|+.++++
T Consensus       206 Pgt~-Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v  241 (358)
T 2b0j_A          206 PEMK-GQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (358)
T ss_dssp             TTTC-CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCC-CccccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence            4332 11233444568999999999999999999998

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.91  E-value=0.0079  Score=59.00  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++.|||.|. .|.++|..|...|..|++.++....++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            7899999876 699999999999999999986533222                                     34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++-.--++.       +.+++++++++....
T Consensus       204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGIN  234 (285)
T ss_dssp             CSEEEECSSCTTCBCG-------GGSCTTEEEEECCCE
T ss_pred             CCEEEECCCCCCcCCH-------HHcCCCeEEEEeccC
Confidence            9999999973221222       456889988876543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.87  E-value=0.0066  Score=60.83  Aligned_cols=91  Identities=15%  Similarity=-0.007  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-----c--C
Q 007805          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L  380 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~--~  380 (589)
                      ++|.|||.|.| |..+|..|+..|..|+++|++..++..-.          ...+.          .....     +  .
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra----------~~la~----------~~~~~t~~~~t~~~  237 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRG----------ESLKL----------NKHHVEDLGEYSED  237 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESC----------CCSSC----------CCCEEEEEEECCHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHH----------HHHhh----------hcccccccccccHh
Confidence            78999999976 99999999999999999998843211100          00000          00111     1  3


Q ss_pred             Cc-cCCCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          381 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      ++ +.+++||+||-|++-.-- +..+       .+++++++++.++.-
T Consensus       238 ~L~e~l~~ADIVIsAtg~p~~vI~~e-------~vk~GavVIDVgi~r  278 (320)
T 1edz_A          238 LLKKCSLDSDVVITGVPSENYKFPTE-------YIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHCSEEEECCCCTTCCBCTT-------TSCTTEEEEECSSSC
T ss_pred             HHHHHhccCCEEEECCCCCcceeCHH-------HcCCCeEEEEcCCCc
Confidence            34 567899999999963221 2222       357888888877654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.86  E-value=0.014  Score=60.61  Aligned_cols=69  Identities=14%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|||+| .||..++..+... +++|+ ++|+++++.+...++.                       .+...+++ +.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence            579999999 9999999988875 56665 8899998876642211                       12345565 33


Q ss_pred             C--CCCCEEEEeccCChH
Q 007805          385 F--KDVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~--~~aDlVIeavpe~~~  400 (589)
                      +  .++|+|++|+|....
T Consensus        60 l~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH
T ss_pred             HcCCCCCEEEEcCCcHHH
Confidence            4  369999999996553

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0051  Score=65.47  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=36.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~  347 (589)
                      .+++|.|+|+|.+|.+++..|++. |++|++++|++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            457899999999999999999998 78999999998876653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.86  E-value=0.18  Score=54.00  Aligned_cols=162  Identities=12%  Similarity=0.084  Sum_probs=99.8

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCC
Q 007805           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (589)
Q Consensus        21 ~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (589)
                      |+|..  -.++++-.....+.++.+++. .+-+|.|-=. +.|..|.+-+..          ...+..-.++ ..+....
T Consensus       337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG~~~G~~~E~~----------g~~~~~A~~~-~a~~~~~  403 (527)
T 1vrg_A          337 NQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEHG----------GIIRHGAKLL-YAYSEAT  403 (527)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred             EcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CCCcCchhhHHh----------HHHHHHHHHH-HHHhcCC
Confidence            45542  589999999999999888643 4555555322 234444432211          1122222444 5678899


Q ss_pred             CcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhhc-----CHHHHHH-HH--HcC
Q 007805           99 KPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MM--LLS  166 (589)
Q Consensus        99 kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~-----G~~~a~~-l~--ltg  166 (589)
                      .|+|+.|-|.|.|||..-..    .+|+++|.++++++       .+++-|....+-+.-     .....++ +.  +.-
T Consensus       404 vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  476 (527)
T 1vrg_A          404 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQ  476 (527)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            99999999999988874332    38988887777665       444444444443321     1111111 22  112


Q ss_pred             CCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       167 ~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      +.-++..+.+.|+||+|+++.+.........+.+..
T Consensus       477 ~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~  512 (527)
T 1vrg_A          477 QFANPYIAASRGYVDMVIDPRETRKYIMRALEVCET  512 (527)
T ss_dssp             HTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             hhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhc
Confidence            236778899999999999998877666555555543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.82  E-value=0.023  Score=57.79  Aligned_cols=71  Identities=11%  Similarity=-0.066  Sum_probs=50.9

Q ss_pred             cceEEEEcCC-CCcHHHHHHHHhC--CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805          308 VRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (589)
Q Consensus       308 ~~kI~IIG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (589)
                      .-||+|||+| .||...+..+.+.  +++| .++|+++++.+...++                      .+.....+|+ 
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCHH
Confidence            4589999999 8999999988876  4665 5889999887664221                      1122445666 


Q ss_pred             cCC--CCCCEEEEeccCChH
Q 007805          383 SEF--KDVDMVIEAVIESVP  400 (589)
Q Consensus       383 ~~~--~~aDlVIeavpe~~~  400 (589)
                      +.+  .+.|+|++|+|....
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGH
T ss_pred             HHhcCCCCCEEEEeCCchHH
Confidence            334  368999999996543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.82  E-value=0.011  Score=60.42  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             cceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ..||+|||+|.||.. .+..+... +++|+ ++|+++++.+.             .            .......+|+ +
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHH
Confidence            358999999999997 67777665 67765 88999876431             0            1123455666 3


Q ss_pred             CCC--CCCEEEEeccCChHH
Q 007805          384 EFK--DVDMVIEAVIESVPL  401 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~~  401 (589)
                      .++  +.|+|++|+|.....
T Consensus        62 ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEeCChHHHH
Confidence            343  589999999976653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.81  E-value=0.0094  Score=58.45  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++.|||.|. +|..+|..|...|..|++.++....++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            6899999876 699999999999999999986432221                                     34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ||+||-|++-.--++.       +.+++++++++...
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  234 (285)
T 3l07_A          205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVGI  234 (285)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCcEEEEecc
Confidence            9999999973221222       35688998887654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.81  E-value=0.01  Score=56.01  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      +||.|+|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            36999997 999999999999999999999999887554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.80  E-value=0.0053  Score=60.25  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||.|. .|..+|..|...|..|+++++....+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            7899999996 599999999999999999986543322                                     33568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-|++..--++.       +.++++++|++....
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGIN  233 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCCE
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccCC
Confidence            9999999973221222       236888888876543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.74  E-value=0.021  Score=55.39  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999998 789998764

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.74  E-value=0.01  Score=61.06  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             CccceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +.+.||+|||+|.||.. .+..+... +++|+ ++|++++++.+                         ........+++
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~   57 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSF   57 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCS
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCH
Confidence            34568999999999997 66666665 77775 88999765211                         01123455666


Q ss_pred             -cCCC--CCCEEEEeccCChH
Q 007805          383 -SEFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       383 -~~~~--~aDlVIeavpe~~~  400 (589)
                       +.++  +.|+|++|+|....
T Consensus        58 ~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A           58 KELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             HHHHTCTTCCEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCChHHH
Confidence             4444  48999999996554

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=95.73  E-value=0.014  Score=59.62  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             ceEEEEcCCCCcHHHHHH-H-Hh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATA-H-IL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~-l-~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      .||+|||+|.||..+... + .. .+++|+ ++|+++++.+.+           .+            ...+...+++ +
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~------------~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-----------PI------------YSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS-----------GG------------GTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH-----------Hh------------cCCCceECCHHH
Confidence            589999999999874433 3 32 367776 899998754221           00            1223456666 4


Q ss_pred             CCC--CCCEEEEeccCChH
Q 007805          384 EFK--DVDMVIEAVIESVP  400 (589)
Q Consensus       384 ~~~--~aDlVIeavpe~~~  400 (589)
                      .++  +.|+|++|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEcCChHHH
Confidence            454  48999999996654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.72  E-value=0.0033  Score=60.34  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             CCccceEEEEc-CCCCcHHHHHHHHhCC-CeEEEEeCChHHHH
Q 007805          305 PRGVRKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLL  345 (589)
Q Consensus       305 ~~~~~kI~IIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~  345 (589)
                      +++|++|.|.| .|.+|..++..|++.| ++|++++|+++.++
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~   62 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH   62 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc
Confidence            45678999999 4999999999999999 89999999987643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.70  E-value=0.0075  Score=60.50  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC---hHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~  347 (589)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++..
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            689999999999999999999998 89999999   5555543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=95.68  E-value=0.0052  Score=58.15  Aligned_cols=78  Identities=22%  Similarity=0.215  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHhCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .+|+|||+|.+|..++..  +...|++++ ++|.++++....            -.|          . .+...+++ +.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g----------v-~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE------------VGG----------V-PVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCE------------ETT----------E-EEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhH------------hcC----------C-eeechhhHHHH
Confidence            569999999999999994  345578665 779998754321            000          0 11223444 34


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEK  411 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~  411 (589)
                      +++.|.||+|+|.  ...+++...+.+
T Consensus       143 i~~~D~ViIAvPs--~~~~ei~~~l~~  167 (215)
T 2vt3_A          143 VKDESVAILTVPA--VAAQSITDRLVA  167 (215)
T ss_dssp             CSSCCEEEECSCH--HHHHHHHHHHHH
T ss_pred             HHhCCEEEEecCc--hhHHHHHHHHHH
Confidence            4444999999993  334456555543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.68  E-value=0.015  Score=60.63  Aligned_cols=75  Identities=20%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             CccceEEEEcCCC---CcHHHHHHHHhCC-CeEE--EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 007805          306 RGVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (589)
Q Consensus       306 ~~~~kI~IIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (589)
                      |..-||||||+|.   ||...+..+...+ ++|+  ++|+++++.+...++          .| +         ......
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~---------~~~~~~   69 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-V---------DSERCY   69 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-C---------CGGGBC
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-C---------Ccceee
Confidence            3456899999999   9999988887765 6776  579999887664221          11 0         001345


Q ss_pred             CCc-cCCC-------CCCEEEEeccCChH
Q 007805          380 LDY-SEFK-------DVDMVIEAVIESVP  400 (589)
Q Consensus       380 ~~~-~~~~-------~aDlVIeavpe~~~  400 (589)
                      +|+ +.++       +.|+|++|+|....
T Consensus        70 ~~~~~ll~~~~~~~~~vD~V~i~tp~~~H   98 (398)
T 3dty_A           70 ADYLSMFEQEARRADGIQAVSIATPNGTH   98 (398)
T ss_dssp             SSHHHHHHHHTTCTTCCSEEEEESCGGGH
T ss_pred             CCHHHHHhcccccCCCCCEEEECCCcHHH
Confidence            565 3333       48999999996654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.66  E-value=0.014  Score=54.88  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      +||.|+|+ |.+|+.++..|++.|++|++.+|++++++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            37999995 999999999999999999999999887554

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.65  E-value=0.037  Score=55.91  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCCh
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~  341 (589)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            58999997 9999999999999996       899999975

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.64  E-value=0.037  Score=59.07  Aligned_cols=74  Identities=22%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CccceEEEEcC----CCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          306 RGVRKVAVIGG----GLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       306 ~~~~kI~IIG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      |...||+|||+    |.||...+..+...  +++|+ ++|+++++.+...++          .| +         .....
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g-~---------~~~~~   96 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQ-L---------KHATG   96 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TT-C---------TTCEE
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cC-C---------Cccee
Confidence            44468999999    99999999998875  67764 889999887664221          01 0         01134


Q ss_pred             cCCc-cCC--CCCCEEEEeccCCh
Q 007805          379 VLDY-SEF--KDVDMVIEAVIESV  399 (589)
Q Consensus       379 ~~~~-~~~--~~aDlVIeavpe~~  399 (589)
                      .+++ +.+  .+.|+|++|+|...
T Consensus        97 ~~d~~ell~~~~vD~V~I~tp~~~  120 (479)
T 2nvw_A           97 FDSLESFAQYKDIDMIVVSVKVPE  120 (479)
T ss_dssp             ESCHHHHHHCTTCSEEEECSCHHH
T ss_pred             eCCHHHHhcCCCCCEEEEcCCcHH
Confidence            5566 334  37999999999444

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.63  E-value=0.0089  Score=58.45  Aligned_cols=72  Identities=22%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          309 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~m-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +++.|||.|.| |..+|..|...  |..|++.+++...+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            68999999976 99999999999  889999976543222                                     446


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+||-|++-.--++.       +.+++++++++...
T Consensus       202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVGV  233 (281)
T ss_dssp             TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECCE
T ss_pred             hhCCEEEECCCCCcccCH-------HHcCCCcEEEEccC
Confidence            899999999963221222       23678888887554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.51  E-value=0.011  Score=57.81  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +++.|||.|. .|.++|..|...|..|++..+....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            6899999865 799999999999999999976432221                                     33678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||-+++-.--++.       +.++++++|++..+.
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVGIN  235 (286)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCSC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCeEEEEeccc
Confidence            9999999973221222       356888888776543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.50  E-value=0.047  Score=57.58  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=50.3

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHhC--CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          308 VRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       308 ~~kI~IIG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      ..||+|||+    |.||...+..+.+.  +++| .++|+++++.+...++          .| +         ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~---------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LK-L---------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-C---------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cC-C---------CcceeeC
Confidence            458999999    99999999999886  6776 5899999887654221          01 0         0122455


Q ss_pred             Cc-cCCC--CCCEEEEeccCCh
Q 007805          381 DY-SEFK--DVDMVIEAVIESV  399 (589)
Q Consensus       381 ~~-~~~~--~aDlVIeavpe~~  399 (589)
                      ++ +.++  +.|+|++|+|...
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~  101 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVAS  101 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHH
Confidence            66 3343  6899999999444

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.47  E-value=0.073  Score=52.70  Aligned_cols=94  Identities=16%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccC--
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE--  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  384 (589)
                      .+|..||+|..|.+... +++ .|.+|+.+|++++.++.|++.+...       |.          .++++. .|...  
T Consensus       124 ~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVID  185 (298)
T ss_dssp             CEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGG
T ss_pred             CEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCC
Confidence            68999999997644332 343 5889999999999999987654321       10          122221 11111  


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      -...|+|+.+..  ..-+..+++++...++|+..++..
T Consensus       186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            246799997654  344668999999999998877643

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.46  E-value=0.012  Score=61.54  Aligned_cols=70  Identities=20%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC---------CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      -||||||+|.||...+..+.+.         +.+|+ ++|++++++++..++                      .+....
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------------------~~~~~~   84 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------------------LGAEKA   84 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCeE
Confidence            3799999999999888887754         34554 789999988775332                      122234


Q ss_pred             cCCc-cCC--CCCCEEEEeccCChH
Q 007805          379 VLDY-SEF--KDVDMVIEAVIESVP  400 (589)
Q Consensus       379 ~~~~-~~~--~~aDlVIeavpe~~~  400 (589)
                      .+|+ +.+  .+.|+|++|+|....
T Consensus        85 y~d~~~ll~~~~vD~V~I~tp~~~H  109 (412)
T 4gqa_A           85 YGDWRELVNDPQVDVVDITSPNHLH  109 (412)
T ss_dssp             ESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             ECCHHHHhcCCCCCEEEECCCcHHH
Confidence            5666 334  468999999996554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.46  E-value=0.0056  Score=58.05  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      |++|.|+|+ |.+|+.++..|++.|++|++.+++++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            578999995 9999999999999999999999998754

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.43  E-value=0.044  Score=58.72  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             CccceEEEEcCCCCcHH-HHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          306 RGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ..+++|.|||.|-.|.+ +|..|.+.|++|+++|.++.....          .+.+.|.           .+....+.+.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~----------~l~~~gi-----------~~~~g~~~~~   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQ----------HLTALGA-----------QIYFHHRPEN   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------EEESSCCGGG
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHH----------HHHHCCC-----------EEECCCCHHH
Confidence            35789999999999996 999999999999999987543211          1112221           1222234456


Q ss_pred             CCCCCEEEEe--ccCC
Q 007805          385 FKDVDMVIEA--VIES  398 (589)
Q Consensus       385 ~~~aDlVIea--vpe~  398 (589)
                      +.++|+||.+  +|.+
T Consensus        79 ~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           79 VLDASVVVVSTAISAD   94 (494)
T ss_dssp             GTTCSEEEECTTSCTT
T ss_pred             cCCCCEEEECCCCCCC
Confidence            7889999975  5543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.42  E-value=0.3  Score=52.77  Aligned_cols=163  Identities=13%  Similarity=0.054  Sum_probs=93.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-++.+...+.+.++++.+.+. .+-+|.|.-.|+     +.+.+-.....  ....+.+.+.+.  ..+.....|+|++
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-----Arl~~qe~~~~--~l~~~g~if~~~--~~ls~~~iP~Isv  188 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-----VEFPNQDKVYP--NRRGGGTPFFRN--SELNQLGIPVIVG  188 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGHHHHSS--STTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cCccccccccc--chhhHHHHHHHH--HHHhcCCCCEEEE
Confidence            3789999999999999988765 355677765443     44421111100  011122222222  2356678999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCCceEeccccc--cCCCCChhhhhhHhhh---cCHHHHHHHHHcCCCCCHHHHH--Hc
Q 007805          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELT--LGVIPGFGGTQRLPRL---VGLSKAIEMMLLSKSITSEEGW--KL  177 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~--~Gl~p~~g~~~~l~~~---~G~~~a~~l~ltg~~~~a~~A~--~~  177 (589)
                      |-|.|.|||...++++|++++.+++.+++.-..  -|+-|. | .. .+.-   +......+-..+.+.+.+.+.+  ..
T Consensus       189 v~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~-g-~~-~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~s  265 (588)
T 3gf3_A          189 IYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK-G-YI-DDEAAEQIIAAQIENSKLKVPAPGSVPIHYDET  265 (588)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTS
T ss_pred             EeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc-c-cc-cccchhhhhhhhccccccChhhccchhhhcccc
Confidence            999999999877888898898899988774332  121111 0 00 1110   0001111112466777777777  47


Q ss_pred             CCcceecCchH-HHHHHHHHHHHH
Q 007805          178 GLIDAVVTSEE-LLKVSRLWALDI  200 (589)
Q Consensus       178 Glv~~vv~~~~-l~~~a~~~a~~l  200 (589)
                      |++|.++++|+ ..+.++++..-+
T Consensus       266 Gv~d~~a~de~~al~~~r~~ls~L  289 (588)
T 3gf3_A          266 GFFREVYQNDLGVIDGIKKYISYL  289 (588)
T ss_dssp             CCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             ccceEEeCCHHHHHHHHHHHHHhC
Confidence            99999997663 444444444433

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.28  E-value=0.024  Score=58.41  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|||+| +|.--+..+.+.  +++++ ++|+++++.+...++                      . .+...+|+ +.
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------------------~-gv~~~~~~~~l   63 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------------------F-GIPLYTSPEQI   63 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------------------T-TCCEESSGGGC
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------------------h-CCCEECCHHHH
Confidence            589999999 798777777654  56766 789999887664221                      1 23455677 56


Q ss_pred             CCCCCEEEEeccCCh
Q 007805          385 FKDVDMVIEAVIESV  399 (589)
Q Consensus       385 ~~~aDlVIeavpe~~  399 (589)
                      +++.|+|++|+|...
T Consensus        64 ~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           64 TGMPDIACIVVRSTV   78 (372)
T ss_dssp             CSCCSEEEECCC--C
T ss_pred             hcCCCEEEEECCCcc
Confidence            788999999998654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.18  E-value=0.31  Score=52.18  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=100.4

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCC
Q 007805           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (589)
Q Consensus        21 ~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (589)
                      |+|..  -.++++-.+...+.++.++.. .+-.|.|-=. +.|..|.+-+..          ...+....++ ..+.+..
T Consensus       333 n~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt-pGf~~G~~~E~~----------Gi~~~~A~~l-~a~a~~~  399 (523)
T 1on3_A          333 NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEYG----------GIIRHGAKML-YAYSEAT  399 (523)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred             ecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC-CCcCcchHHHHh----------hHHHHHHHHH-HHHhcCC
Confidence            45542  589999999999999888653 4555555322 345555543221          1122233445 5688999


Q ss_pred             CcEEEEeCCcccchhhHHhhh----cCEEEEeCCceEeccccccCCCCChhhhhhHhhhc-----CHHHHHH-HHH--cC
Q 007805           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML--LS  166 (589)
Q Consensus        99 kp~iaav~G~a~GgG~~lala----~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~-----G~~~a~~-l~l--tg  166 (589)
                      .|+|+.|-|.+.|||..-...    +|+++|.++++++       .++.-|....+-+.-     -....++ +.-  .-
T Consensus       400 vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  472 (523)
T 1on3_A          400 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQN  472 (523)
T ss_dssp             SCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999888754433    7888777776665       444445444443321     1111111 211  11


Q ss_pred             CCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       167 ~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      +.-++..+.+.|+||+|+++.+.........+.+..
T Consensus       473 ~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~  508 (523)
T 1on3_A          473 AFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  508 (523)
T ss_dssp             HHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             hhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhc
Confidence            125678899999999999998877665555555443

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.14  E-value=0.022  Score=57.70  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEEEE-eC--ChHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EV--NSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~-d~--~~~~~~~  346 (589)
                      .||||+|+|.||.-+++.+.++ +++|+.+ |.  +++.+..
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~   45 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTY   45 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHH
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHH
Confidence            5899999999999999998876 5666544 42  4454444

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.13  E-value=0.026  Score=57.16  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=60.2

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-  380 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-  380 (589)
                      .|.||+|+|+ |.+|..+...|..+ .+++..+..+.   +.-+..    ...+..+  .|..          .+.... 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~~----------~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGIV----------ELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTTC----------CCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCcc----------ceeEecc
Confidence            3589999995 99999999999885 56777665433   211110    0000000  0100          122222 


Q ss_pred             -CccCC-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          381 -DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       381 -~~~~~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                       +.+.+ +++|+||+|+|  ...-+++..++   +..++.++++++....
T Consensus        67 ~~~~~~~~~~Dvvf~a~p--~~~s~~~~~~~---~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATA--HEVSHDLAPQF---LEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SSGGGTCTTCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred             CCHHHHhcCCCEEEECCC--hHHHHHHHHHH---HHCCCEEEEcCCcccc
Confidence             34445 89999999998  44444554444   3467888899987644

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.10  E-value=0.11  Score=52.18  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      -++|.|.|+ |.+|+.++..|++.|++|++.+++++..+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            468999997 9999999999999999999999998765543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.08  E-value=0.023  Score=48.55  Aligned_cols=81  Identities=9%  Similarity=-0.008  Sum_probs=57.6

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       308 ~~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      .++|+|||+    +..|..+...|.+.||+|+.++...+.+                             .......+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            478999998    5678999999999999988888653321                             1234455565


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ++.+.|+++.++|  .+...++++++.+. ....+|.
T Consensus        55 dlp~vDlavi~~p--~~~v~~~v~e~~~~-g~k~v~~   88 (122)
T 3ff4_A           55 VIEGVDTVTLYIN--PQNQLSEYNYILSL-KPKRVIF   88 (122)
T ss_dssp             CCTTCCEEEECSC--HHHHGGGHHHHHHH-CCSEEEE
T ss_pred             HCCCCCEEEEEeC--HHHHHHHHHHHHhc-CCCEEEE
Confidence            5544999999998  66666778876654 2335554

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.04  E-value=0.17  Score=54.88  Aligned_cols=157  Identities=11%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -.++++-.....+.++.++. ..+-+|.|.=. +.|..|.+-++          ....+....++ .++.....|+|+.|
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gA~~~-~a~a~a~vP~itvI  451 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT  451 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            47999999999999987765 35666666433 34555554221          11223333555 67899999999999


Q ss_pred             CCcccchhhHHhhh-----c--CEEEEeCCceEeccccccCCCCChhhhhhHhhh-cCH---------HHH---HHHH--
Q 007805          106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL---------SKA---IEMM--  163 (589)
Q Consensus       106 ~G~a~GgG~~lala-----~--D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~G~---------~~a---~~l~--  163 (589)
                      -|.+.|||. ++++     +  |+++|.++++++       .+++-|....+-+. .-.         ..+   .++.  
T Consensus       452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~  523 (587)
T 1pix_A          452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  523 (587)
T ss_dssp             CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence            999998884 5554     4  998888877776       44434444333322 110         000   0110  


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      +. +..++..|.+.|+||.|+++.+.........+.+...+
T Consensus       524 y~-~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          524 FY-TKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HH-HTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             HH-HhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            11 14889999999999999999888776666666665554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.02  E-value=0.024  Score=56.11  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47999997 99999999999999999999999864

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.02  E-value=0.024  Score=57.50  Aligned_cols=38  Identities=21%  Similarity=0.413  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~  346 (589)
                      .||||+|+|.||..++..+.++ +++|+ +.|++++...+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~   41 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR   41 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHH
Confidence            5899999999999999999874 56664 46777655443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.98  E-value=0.037  Score=54.79  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|+| +|-+|.+++..|++.|.+|++++|++++.+...+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            6799999 8999999999999999999999999887766543

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.93  E-value=0.24  Score=52.99  Aligned_cols=163  Identities=16%  Similarity=0.216  Sum_probs=101.2

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.=|+|..  -.++++..+...+.++.+++. .+-.|.|.=.+ .|..|.+-+.          ....+..-.++ .++.
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~----------~gi~~~~Ak~l-~a~a  402 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQEH----------DGIIRRGAKLI-FAYA  402 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHHH----------hhHHHHHHHHH-HHHH
Confidence            34456653  589999999999999888764 45566664332 2666655321          11223333555 6788


Q ss_pred             hCCCcEEEEeCCcccchhhHHhhh-----cCEEEEeCCceEeccccccCCCCChhhhhhHhhh-cC------HHHHHHHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VG------LSKAIEMM  163 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala-----~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~G------~~~a~~l~  163 (589)
                      ....|+|+.|-|.++|||. ++++     .|+++|.++++++       .+++-|....+-+. +-      ...-.++.
T Consensus       403 ~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~-------Vm~~egaa~il~r~~~~~~~~d~~~~~~~~~  474 (530)
T 3iav_A          403 EATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIA-------VMGAQGAVNILHRRTIADAGDDAEATRARLI  474 (530)
T ss_dssp             HCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTSTTTSTTCTTCHHHHHHHH
T ss_pred             hCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEe-------cCCHHHHHHHHhhhhhhhcccCHHHHHHHHH
Confidence            9999999999999998776 4444     6998888887766       44333433333221 11      01111111


Q ss_pred             --HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHH
Q 007805          164 --LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (589)
Q Consensus       164 --ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (589)
                        +.-+..++..|.+.|+||.|+++.+.........+.+.
T Consensus       475 ~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~  514 (530)
T 3iav_A          475 QEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  514 (530)
T ss_dssp             HHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHh
Confidence              11123477788899999999999887765554444433

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.90  E-value=0.041  Score=55.17  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=28.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh-C-CCeE-EEEeCChHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL-N-NIYV-VLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~-~-G~~V-~~~d~~~~~  343 (589)
                      ..||+|||+|.||..++..+.+ . +.++ .++|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3589999999999999998865 3 5554 578999776

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=94.90  E-value=0.039  Score=55.97  Aligned_cols=86  Identities=14%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH-hhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~  384 (589)
                      .||||+|+|.||..++..+... +.+| .+.|++++.+....++..  +   --.+.+. ...... -..+....++ +.
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g--~---~~~~~~~-~~v~~~~~~~~~v~~d~~~l   76 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG--I---PVYAASE-EFIPRFEKEGFEVAGTLNDL   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT--C---CEEESSG-GGHHHHHHHTCCCSCBHHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcC--c---ccccccc-ccceeccCCceEEcCcHHHh
Confidence            5899999999999999998876 4565 466888776654322100  0   0000000 000000 0122334455 34


Q ss_pred             CCCCCEEEEeccCChH
Q 007805          385 FKDVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~  400 (589)
                      +.++|+|++|.|....
T Consensus        77 ~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           77 LEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HTTCSEEEECCSTTHH
T ss_pred             ccCCCEEEECCCcccc
Confidence            5689999999996654

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.79  E-value=0.018  Score=58.26  Aligned_cols=179  Identities=13%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC---------CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN---------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G---------~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      -||+|||+|.||+.++..+.+..         .+| .++|+++++.+                + +.         ...+
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-cC---------cccc
Confidence            57999999999999999988763         454 46788754311                1 11         1134


Q ss_pred             cCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCc-EEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCCCC
Q 007805          379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHVMP  454 (589)
Q Consensus       379 ~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~~~  454 (589)
                      ++|+ +.+ +.|+|++|+|..... .++..+   .+..+. +++.|...+  ...++.+.....     ...|...    
T Consensus        58 ~~d~~~ll-~iDvVve~t~~~~~a-~~~~~~---AL~aGKhVVtaNkkpla~~~~eL~~~A~~~-----~~~~Ea~----  123 (332)
T 2ejw_A           58 RAEPFDLL-EADLVVEAMGGVEAP-LRLVLP---ALEAGIPLITANKALLAEAWESLRPFAEEG-----LIYHEAS----  123 (332)
T ss_dssp             ESSCCCCT-TCSEEEECCCCSHHH-HHHHHH---HHHTTCCEEECCHHHHHHSHHHHHHHHHTT-----CEECGGG----
T ss_pred             cCCHHHHh-CCCEEEECCCCcHHH-HHHHHH---HHHcCCeEEECCchhHHHHHHHHHHHHHhC-----CeEEEEE----
Confidence            5666 445 999999999855322 222222   222333 444343221  122333322221     1112211    


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CCcHHH
Q 007805          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGL-PIGPFQ  533 (589)
Q Consensus       455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~-p~Gpf~  533 (589)
                           .+...+  .++.++ .+  -|-.+..+.-    |.|-...-++++    .++|.+.+++-.-....|| ..+|  
T Consensus       124 -----vg~giP--ii~~l~-~l--~~~~I~~I~g----I~nGT~nyil~~----m~~g~~f~~~l~eAq~~GyaE~dP--  183 (332)
T 2ejw_A          124 -----VMAGTP--ALSFLE-TL--RGSELLELHG----ILNGTTLYILQE----MEKGRTYAEALLEAQRLGYAEADP--  183 (332)
T ss_dssp             -----TTTTSS--SHHHHH-HH--TTSEEEEEEE----ECCHHHHHHHHH----HHTTCCHHHHHHHHHHTTSSCSSC--
T ss_pred             -----cccCCH--HHHHHH-Hh--cCCCcceEEE----EEecccccccCc----cccCCCHHHHHHHHHHCCCCCCCC--
Confidence                 111111  234444 22  2222222211    233332222222    2388888887555566777 3567  


Q ss_pred             HHHHhchHHHHHHH
Q 007805          534 LLDLAGYGVAAATS  547 (589)
Q Consensus       534 ~~D~~Gld~~~~~~  547 (589)
                      ..|.-|.|...++.
T Consensus       184 ~~Dv~G~d~a~Kl~  197 (332)
T 2ejw_A          184 TLDVEGIDAAHKLT  197 (332)
T ss_dssp             HHHHTTHHHHHHHH
T ss_pred             ccccCchhHHHHHH
Confidence            88999999877643

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.75  E-value=0.038  Score=54.48  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      +.||+|+| +|.||..++..+.+. +++++ ++|++++...-  ..    ...+...+          ...+..++|+ +
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G--~d----~gel~G~~----------~~gv~v~~dl~~   84 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD--KD----ASILIGSD----------FLGVRITDDPES   84 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT--SB----GGGGTTCS----------CCSCBCBSCHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--cc----hHHhhccC----------cCCceeeCCHHH
Confidence            35899999 899999999998764 67755 55886432100  00    00000000          0124456677 4


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      .+.++|+||++.+  ++..   +..+...+..+.-+++.|++++.+
T Consensus        85 ll~~aDVvIDFT~--p~a~---~~~~~~~l~~Gv~vViGTTG~~~e  125 (288)
T 3ijp_A           85 AFSNTEGILDFSQ--PQAS---VLYANYAAQKSLIHIIGTTGFSKT  125 (288)
T ss_dssp             HTTSCSEEEECSC--HHHH---HHHHHHHHHHTCEEEECCCCCCHH
T ss_pred             HhcCCCEEEEcCC--HHHH---HHHHHHHHHcCCCEEEECCCCCHH
Confidence            5789999999886  4432   333333344455556666677654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=94.74  E-value=0.015  Score=58.81  Aligned_cols=197  Identities=16%  Similarity=0.094  Sum_probs=93.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC---------CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  377 (589)
                      |-||+|||+|.||+.++..+.+.         +++|+ ++|++++..+..  ...+.+......+              .
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~i--d~~~~~~~~~~~~--------------~   65 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDF--SLVEALRMKRETG--------------M   65 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSC--CHHHHHHHHHHHS--------------S
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhcccc--CHHHHHhhhccCc--------------c
Confidence            46899999999999999998875         45554 667775442210  0000000000001              1


Q ss_pred             cc--CCc-cCC--CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE-ecCCCCC--HHHHhcccCCC-CcEEEecCCC
Q 007805          378 GV--LDY-SEF--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTID--LNIVGEKTSSQ-DRIIGAHFFS  448 (589)
Q Consensus       378 ~~--~~~-~~~--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~--~~~~~~~~~~~-~r~ig~h~~~  448 (589)
                      .+  .|+ +.+  .+.|+|++|+|.+..... .+..+...+..+.-++ .|...+.  ..++.+..... .++.    |.
T Consensus        66 ~~~~~d~~~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~----~e  140 (327)
T 3do5_A           66 LRDDAKAIEVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLM----YE  140 (327)
T ss_dssp             CSBCCCHHHHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEE----CG
T ss_pred             ccCCCCHHHHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEE----EE
Confidence            22  244 223  468999999997653211 2233344455555444 4443222  12333222211 1111    11


Q ss_pred             CCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 007805          449 PAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP  528 (589)
Q Consensus       449 p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p  528 (589)
                      . ..+      .+  .  -.+..+++++.  |-++..+.-    |.|-...-+++   +|-++|.+.+++=+-....||.
T Consensus       141 a-~v~------~g--~--Pii~~l~~~l~--~~~I~~I~G----IlnGT~nyilt---~m~~~g~~f~~~l~~Aq~~Gya  200 (327)
T 3do5_A          141 A-TVG------GA--M--PVVKLAKRYLA--LCEIESVKG----IFNGTCNYILS---RMEEERLPYEHILKEAQELGYA  200 (327)
T ss_dssp             G-GSS------TT--S--CCHHHHHTTTT--TSCEEEEEE----ECCHHHHHHHH---HHHHHCCCHHHHHHHHHHTTSS
T ss_pred             E-Eee------ec--C--HHHHHHHHHhh--CCCccEEEE----EECCCcCcchh---hcCcCCcCHHHHHHHHHHcCCC
Confidence            1 000      00  0  01234444432  222222211    22222111111   3346799988876666666663


Q ss_pred             -CcHHHHHHHhchHHHHHHH
Q 007805          529 -IGPFQLLDLAGYGVAAATS  547 (589)
Q Consensus       529 -~Gpf~~~D~~Gld~~~~~~  547 (589)
                       .=|  ..|.-|+|...++.
T Consensus       201 E~DP--~~Dv~G~D~a~Kl~  218 (327)
T 3do5_A          201 EADP--SYDVEGIDAALKLV  218 (327)
T ss_dssp             CSSC--HHHHTSHHHHHHHH
T ss_pred             CCCc--hhhcCChhHHHHHH
Confidence             222  68999999988743

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.72  E-value=0.039  Score=55.90  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeC--ChHHHHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEV--NSEYLLK  346 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~--~~~~~~~  346 (589)
                      +.||||+|+|.+|..+++.+..+ +++|+ +.|+  +++.+..
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~   45 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY   45 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            35899999999999999998775 57766 4453  5665544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=94.70  E-value=0.03  Score=57.81  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHh--------CCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          310 KVAVIGGGLMGSGIATAHIL--------NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~--------~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      ||||||+|.||..-+..+..        .+.+| .++|+++++++...++                      .+.-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence            79999999999876655432        14555 4889999887764332                      12223556


Q ss_pred             Cc-cCC--CCCCEEEEeccCChHH
Q 007805          381 DY-SEF--KDVDMVIEAVIESVPL  401 (589)
Q Consensus       381 ~~-~~~--~~aDlVIeavpe~~~~  401 (589)
                      |+ +.+  .+.|+|++|+|.....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            66 334  4689999999966543

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.68  E-value=0.44  Score=51.20  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCC
Q 007805           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (589)
Q Consensus        21 ~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (589)
                      |+|..  -+++++-.+...+.++.+++. .+-.|.|-=. +.|..|.+-++.          ...+.....+ ..+.+..
T Consensus       354 n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~~----------Gi~~~ga~~l-~a~~~~~  420 (548)
T 2bzr_A          354 NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYGEAT  420 (548)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred             ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHHh----------hHHHHHHHHH-HHHhCCC
Confidence            45542  589999999999999988754 4555555322 335555543221          1122233445 5688899


Q ss_pred             CcEEEEeCCcccchhhHHh----hhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-cCH------H--HHHH-HHH
Q 007805           99 KPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL------S--KAIE-MML  164 (589)
Q Consensus        99 kp~iaav~G~a~GgG~~la----la~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~G~------~--~a~~-l~l  164 (589)
                      .|+|+.|-|.|.|||.--.    +.+|+++|.++++++       .+++-|....+-+. +-.      .  ..+. +.-
T Consensus       421 VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~  493 (548)
T 2bzr_A          421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQ  493 (548)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHH
T ss_pred             CCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHH
Confidence            9999999999999887543    348998888887766       44434444444332 110      0  1111 211


Q ss_pred             --cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHH
Q 007805          165 --LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (589)
Q Consensus       165 --tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (589)
                        .-..-++..+.+.|+||.|+++.+.........+.+
T Consensus       494 ~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l  531 (548)
T 2bzr_A          494 EYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLL  531 (548)
T ss_dssp             HHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHT
T ss_pred             HHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHH
Confidence              111245677999999999999987765554444443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.65  E-value=0.023  Score=58.52  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCC--------CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          310 KVAVIGGGLMGSGIATAHILNN--------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G--------~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      ||||||+|.||..-+..+....        .+| .++|+++++++...++                      .+.-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~g~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------------------LGWSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------------------cCCCcccC
Confidence            7999999999998877766531        244 5889999987765331                      12224556


Q ss_pred             Cc-cCC--CCCCEEEEeccCChHH
Q 007805          381 DY-SEF--KDVDMVIEAVIESVPL  401 (589)
Q Consensus       381 ~~-~~~--~~aDlVIeavpe~~~~  401 (589)
                      |+ +.+  .+.|+|++|+|.....
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~   89 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA   89 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH
Confidence            66 444  4689999999966543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.64  E-value=0.091  Score=49.24  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             eEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       310 kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      ||.|+| .|.+|..++..|++.|++|++.+|+++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            799999 59999999999999999999999998754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.62  E-value=0.039  Score=55.16  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            568999996 9999999999999999999999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.57  E-value=0.12  Score=54.70  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      -+||.|||.|..|.+.|..|.+.|++|+++|.++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            47899999999999999999999999999999653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.55  E-value=0.034  Score=55.16  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            467999997 9999999999999999999999986

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.50  E-value=0.026  Score=56.39  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+++
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            358999996 99999999999999999999999875

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.42  E-value=0.019  Score=54.73  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      .|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999764

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=94.38  E-value=0.036  Score=55.61  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=30.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeE-EEEeCChHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V-~~~d~~~~~  343 (589)
                      |.||+|||+ |.||...+..+...+.+| .++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            578999999 789999999999888765 588998775

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.36  E-value=0.055  Score=54.82  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |..++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            44578999998 9999999999999999999999976

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.35  E-value=0.024  Score=58.60  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             ccceEEEEc-CCCCcHH-HH----HHHHhCC-CeE----------EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHH
Q 007805          307 GVRKVAVIG-GGLMGSG-IA----TAHILNN-IYV----------VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA  369 (589)
Q Consensus       307 ~~~kI~IIG-~G~mG~~-iA----~~l~~~G-~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (589)
                      ...||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++.+...++                   
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~-------------------   65 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR-------------------   65 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH-------------------
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH-------------------
Confidence            345799999 9999998 66    6666543 332          4999999987764221                   


Q ss_pred             HHHhhcccccCCc-cCC--CCCCEEEEeccCChH
Q 007805          370 NNALKMLKGVLDY-SEF--KDVDMVIEAVIESVP  400 (589)
Q Consensus       370 ~~~~~~i~~~~~~-~~~--~~aDlVIeavpe~~~  400 (589)
                         .+.-...+|+ +.+  .+.|+|++|+|....
T Consensus        66 ---~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           66 ---FNIARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ---TTCCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ---hCCCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence               1111345666 334  358999999997554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.32  E-value=0.34  Score=51.73  Aligned_cols=161  Identities=15%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.=|+|..  -.++++-.+...+.++.+++. .+-.|.|.=. +.|..|.+-++          ....+....++ .++.
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gAk~l-~a~a  408 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV-PGFLPGTSQEY----------GGVIKHGAKLL-YAYG  408 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CSBCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC-CCCCCCHHHHH----------hhHHHHHHHHH-HHHH
Confidence            33356653  589999999999999887754 4556666432 23544543221          11223333555 6788


Q ss_pred             hCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhh-hcC---HHHHHHHHHcCC
Q 007805           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG---LSKAIEMMLLSK  167 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~-~~G---~~~a~~l~ltg~  167 (589)
                      +...|+|+.|-|.++|||..-..    .+|+++|.++++++       .+++-|....+-+ .+-   ....+.--+.-+
T Consensus       409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~  481 (531)
T 3n6r_B          409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADYEER  481 (531)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHH
T ss_pred             hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence            99999999999999998874333    38998888777766       4433343333322 111   111111111112


Q ss_pred             CCCHHHHHHcCCcceecCchHHHHHHHHHHH
Q 007805          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWAL  198 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~  198 (589)
                      .-++..|.+.|+||.|++|.+.........+
T Consensus       482 ~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~  512 (531)
T 3n6r_B          482 FANPFVASERGFVDEVIQPRSTRKRVARAFA  512 (531)
T ss_dssp             HSSSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred             hcCHHHHHhcCccCcccCHHHHHHHHHHHHH
Confidence            2466678899999999999887665444433

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.30  E-value=0.1  Score=51.53  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-.|+.+|..|+..|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999876

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=94.29  E-value=0.062  Score=54.54  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCC-C-CHHHHHHHhh--cccccCCc
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGK-L-TQDKANNALK--MLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~--~i~~~~~~  382 (589)
                      .||||+|+|.||..++..+.++ +++|+ +.|++++.......+          .|. . ...+....++  .+....+.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~----------~g~~~~~~~~~~~~~~~~~v~v~~~~   71 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR----------RGIRIYVPQQSIKKFEESGIPVAGTV   71 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH----------TTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHh----------cCcceecCcCHHHHhcccccccccCH
Confidence            4899999999999999998876 45654 667776655442211          110 0 0000111111  12233344


Q ss_pred             cC-CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 SE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 ~~-~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +. .+++|+||+|+|.....  +....   +++.++.++++++.
T Consensus        72 e~l~~~vDvV~~aTp~~~s~--~~a~~---~~~aG~kvV~~sa~  110 (340)
T 1b7g_O           72 EDLIKTSDIVVDTTPNGVGA--QYKPI---YLQLQRNAIFQGGE  110 (340)
T ss_dssp             HHHHHHCSEEEECCSTTHHH--HHHHH---HHHTTCEEEECTTS
T ss_pred             hHhhcCCCEEEECCCCchhH--HHHHH---HHHcCCeEEEeCCC
Confidence            22 35799999999955432  33232   23345545555543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.29  E-value=0.065  Score=54.50  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ++|+|+|+|++|..+|..+...|.+|+++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            78999999999999999999999999999999764

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=94.28  E-value=0.028  Score=55.76  Aligned_cols=91  Identities=19%  Similarity=0.008  Sum_probs=57.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      .||+|+|+ |.||..++..+.+.|++ .++.+||.+...             +            ...+....++ +..+
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~-------------~------------~~G~~vy~sl~el~~   61 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT-------------T------------HLGLPVFNTVREAVA   61 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-------------E------------ETTEEEESSHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc-------------e------------eCCeeccCCHHHHhh
Confidence            68999998 99999999999888998 556666642100             0            0113344455 3344


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          387 --DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       387 --~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                        ++|++|+++|.  ..-.+++.+..+. ....++ ..|.+++..
T Consensus        62 ~~~~D~viI~tP~--~~~~~~~~ea~~~-Gi~~iV-i~t~G~~~~  102 (288)
T 2nu8_A           62 ATGATASVIYVPA--PFCKDSILEAIDA-GIKLII-TITEGIPTL  102 (288)
T ss_dssp             HHCCCEEEECCCG--GGHHHHHHHHHHT-TCSEEE-ECCCCCCHH
T ss_pred             cCCCCEEEEecCH--HHHHHHHHHHHHC-CCCEEE-EECCCCCHH
Confidence              79999999994  4455666665543 223333 345566654

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.27  E-value=0.13  Score=56.82  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=54.6

Q ss_pred             CCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC--CHHHH
Q 007805           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEEG  174 (589)
Q Consensus        97 ~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~--~a~~A  174 (589)
                      ...|+|++|.|.|.|||..+...||++|+.+++.+.       +.             |+... +. .||+.+  +.++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if-------lt-------------GP~vI-k~-~tGeeV~~s~eeL  302 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII-------LT-------------GAPAI-NK-MLGREVYTSNLQL  302 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE-------SS-------------CHHHH-HH-HHTSCCCSCTHHH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE-------Ee-------------CHHHH-HH-HhCCccccCchhc
Confidence            467999999999999999999999999999886332       21             11111 11 266665  44432


Q ss_pred             ------HHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          175 ------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       175 ------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                            ...|.+|.++++|+   ++.+.++++.+
T Consensus       303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLs  333 (758)
T 3k8x_A          303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMS  333 (758)
T ss_dssp             HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHT
T ss_pred             chhhHHHhcCCeeEEecCHH---HHHHHHHHHHh
Confidence                  35799999997653   34444555444

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.24  E-value=0.039  Score=54.75  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            578999997 9999999999999999999999984

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.21  E-value=0.021  Score=59.01  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      .||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4799999999999999999999999999997643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.19  E-value=0.038  Score=55.98  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=33.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~  345 (589)
                      ++|.|+|.|..|..++..|.+.|+ |+++|.|+++++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            579999999999999999999999 999999999876

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.16  E-value=0.07  Score=54.45  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-.|+.+|..|+..|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            579999999999999999999998 899999863

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.13  E-value=0.0098  Score=60.87  Aligned_cols=32  Identities=28%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            689999999999999999999998 89999998

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.12  E-value=0.042  Score=55.26  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeE-EEEeCChHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V-~~~d~~~~~  343 (589)
                      |.||||||+ |.||...+..+...+.++ .++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            578999999 799999999999888765 578998764

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.10  E-value=0.085  Score=53.59  Aligned_cols=151  Identities=13%  Similarity=0.142  Sum_probs=75.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhC-CCeEEEEe---CChHHHHHHHHHHHHHHHhhHhcCCCCHHH--HHHHh----hcc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRGKLTQDK--ANNAL----KML  376 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~----~~i  376 (589)
                      .+.||+|+|+|.+|.-+.+.+.++ .++|+.+.   .+.+.+....+       ..-..|.+....  ....+    ..+
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~-------~ds~hg~~~~~v~~~~~~l~v~g~~i   88 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLK-------YDSVHGNFNGTVEVSGKDLCINGKVV   88 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHH-------CCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhc-------ccccCCCCCCcEEEeCCEEEECCeEE
Confidence            356899999999999999998887 57776554   23333322211       001112211000  00000    112


Q ss_pred             ccc--CCccCC----CCCCEEEEeccCChHHHHHHHHHHHHhCCCCc--EEEecCCCCCHHHHhcccCCCCcEEEecCCC
Q 007805          377 KGV--LDYSEF----KDVDMVIEAVIESVPLKQKIFSELEKACPPHC--ILATNTSTIDLNIVGEKTSSQDRIIGAHFFS  448 (589)
Q Consensus       377 ~~~--~~~~~~----~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~--ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~  448 (589)
                      ...  .+++.+    .++|+||+|+|-....     +....++..++  +|+|+++.-.         .|.-+.|   .|
T Consensus        89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~padd~---------~p~~V~G---VN  151 (354)
T 3cps_A           89 KVFQAKDPAEIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPPKDN---------VPMYVMG---VN  151 (354)
T ss_dssp             EEECCSCGGGCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCCSSC---------CCBCCTT---TT
T ss_pred             EEEecCChHHCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCCCCC---------CCEEEec---cC
Confidence            122  134333    5799999999854432     22345666777  8888876310         0100111   11


Q ss_pred             CCCCCCe-eeEecCCCCCHHHHHH-HHHHHHHcCC
Q 007805          449 PAHVMPL-LEIVRTERTSAQVILD-LMTVGKIIKK  481 (589)
Q Consensus       449 p~~~~~l-veiv~~~~t~~e~~~~-~~~l~~~lG~  481 (589)
                      +-.+.+. ..++.++.+....+.- +..|.+..|-
T Consensus       152 ~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI  186 (354)
T 3cps_A          152 NTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGI  186 (354)
T ss_dssp             GGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCe
Confidence            1111111 2377777776666544 4445566664

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=94.07  E-value=0.041  Score=56.25  Aligned_cols=105  Identities=18%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccC
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE  384 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~  384 (589)
                      +.||+|+| .|.+|..++..|.++. ++|+.+..++....+.   +......+. ...+....     ..+... .+.+.
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~   78 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKK---YKDACYWFQ-DRDIPENI-----KDMVVIPTDPKH   78 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB---HHHHSCCCC-SSCCCHHH-----HTCBCEESCTTS
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccccccccc---HHHhccccc-ccccccCc-----eeeEEEeCCHHH
Confidence            36899999 7999999999988764 5777664332211110   000000000 00000000     112221 23433


Q ss_pred             C-C-CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          385 F-K-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       385 ~-~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      + + ++|+||+|+|  .....++...+.   ..++.|+++++..
T Consensus        79 ~~~~~~DvV~~atp--~~~~~~~a~~~~---~aG~~VId~s~~~  117 (354)
T 1ys4_A           79 EEFEDVDIVFSALP--SDLAKKFEPEFA---KEGKLIFSNASAY  117 (354)
T ss_dssp             GGGTTCCEEEECCC--HHHHHHHHHHHH---HTTCEEEECCSTT
T ss_pred             HhcCCCCEEEECCC--chHHHHHHHHHH---HCCCEEEECCchh
Confidence            4 6 8999999998  333444444433   4567788887754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.03  E-value=0.067  Score=57.65  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +++|.|.|+ |.+|+.++..|++.|++|++.++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            468999995 999999999999999999999998654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=93.99  E-value=0.055  Score=55.10  Aligned_cols=98  Identities=13%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +.||+|+| .|.+|..+...|.++.. +++.+....+.-.+    +.    ..  .+.+.     . ...+... +.+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~----~~----~~--~~~~~-----g-~~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP----VH----FV--HPNLR-----G-RTNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB----GG----GT--CGGGT-----T-TCCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch----hH----Hh--Cchhc-----C-ccccccc-chhHh
Confidence            46899999 69999999999987754 76665433221100    00    00  00000     0 0011111 12235


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (589)
                      .++|+||+|+|....  .++...   ++..++.++++++...
T Consensus        67 ~~vDvV~~a~g~~~s--~~~a~~---~~~aG~~VId~Sa~~r  103 (345)
T 2ozp_A           67 EPADILVLALPHGVF--AREFDR---YSALAPVLVDLSADFR  103 (345)
T ss_dssp             CCCSEEEECCCTTHH--HHTHHH---HHTTCSEEEECSSTTS
T ss_pred             cCCCEEEEcCCcHHH--HHHHHH---HHHCCCEEEEcCcccc
Confidence            789999999996543  333333   3456777888887554

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.99  E-value=0.13  Score=49.58  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCC
Q 007805          310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVN  340 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~  340 (589)
                      ||+|+|+ |.||..++..+... |++|+ ++|++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            7999997 99999999998866 89877 56654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.99  E-value=0.39  Score=46.94  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   66 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVD   66 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777786 789999999999999999999999988776543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.93  E-value=0.052  Score=54.94  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      .++|.|.|+ |.+|+.++..|++.|++|++.++++.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            478999996 99999999999999999999999654

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=93.85  E-value=0.034  Score=56.23  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=44.3

Q ss_pred             CCccceEEEEcCCCCcH-HHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       305 ~~~~~kI~IIG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      +|...||+|||+|.||. ..+..+... +++|+ ++|+++++                              ..+...++
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------------------~g~~~~~~   71 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------------------EGVNSYTT   71 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------------------TTSEEESS
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------------------cCCCccCC
Confidence            44556899999999998 688888775 67754 78888542                              01334555


Q ss_pred             c-cCC---CCCCEEEEeccC
Q 007805          382 Y-SEF---KDVDMVIEAVIE  397 (589)
Q Consensus       382 ~-~~~---~~aDlVIeavpe  397 (589)
                      + +.+   .+.|+|++|+|.
T Consensus        72 ~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           72 IEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             HHHHHHHCTTCCEEEECSCH
T ss_pred             HHHHHhCCCCCCEEEEeCCc
Confidence            5 333   468999999993

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.83  E-value=0.25  Score=50.05  Aligned_cols=40  Identities=18%  Similarity=0.178  Sum_probs=35.4

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~II-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      ++|.|+ |+|.+|...++.+...|.+|++.++++++++.+.
T Consensus       152 ~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~  192 (346)
T 3fbg_A          152 KTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK  192 (346)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            579999 6899999999998889999999999999877753

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=93.82  E-value=0.22  Score=49.36  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +++|.|.|+ |.+|+.++..|++.|++|++.++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            368999995 999999999999999999999998543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.81  E-value=0.061  Score=53.42  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999996 9999999999999999999999983

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=93.79  E-value=0.087  Score=50.78  Aligned_cols=78  Identities=15%  Similarity=0.016  Sum_probs=51.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      -++|+++|+|.||..++..  . ++++ .+|+   ++   +              +.+          .+..++|+ +.+
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k---~--------------gel----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI---S--------------KDI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS---C--------------CCC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc---c--------------ccc----------CceeeCCHHHHh
Confidence            4689999999999999998  4 8876 4666   21   1              101          23456667 445


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +++|+|+||.+  .+   .+-+.+.+.+..+.=+++.+
T Consensus        59 a~pD~VVe~A~--~~---av~e~~~~iL~aG~dvv~~S   91 (253)
T 1j5p_A           59 SDVSTVVECAS--PE---AVKEYSLQILKNPVNYIIIS   91 (253)
T ss_dssp             TTCCEEEECSC--HH---HHHHHHHHHTTSSSEEEECC
T ss_pred             hCCCEEEECCC--HH---HHHHHHHHHHHCCCCEEEcC
Confidence            79999999985  33   22233666777765444433

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.74  E-value=0.33  Score=46.94  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=34.4

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |+++| |+ +-||.++|..|++.|..|+++|++++.+++..+++
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i   51 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL   51 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            55555 65 67899999999999999999999999888765543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.70  E-value=0.033  Score=54.77  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      .+++|.|.|+|.+|+.++..|++.|++|++.+++++.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3578999999999999999999999999999998654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=93.63  E-value=0.091  Score=53.74  Aligned_cols=99  Identities=17%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      ..||+|+| .|.+|..+...|.++. ++++.+....+.-.+    +......+  .+.+.        ..+.... .+..
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~----~~~~~~~~--~~~v~--------~dl~~~~-~~~~   80 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQS----MESVFPHL--RAQKL--------PTLVSVK-DADF   80 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSC----HHHHCGGG--TTSCC--------CCCBCGG-GCCG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCC----HHHhCchh--cCccc--------ccceecc-hhHh
Confidence            35899999 7999999999999875 377766433221101    11000000  01000        0111111 2334


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (589)
                      +++|+||+|+|.....  +.   ...+ ..++.++++++...
T Consensus        81 ~~vDvVf~atp~~~s~--~~---a~~~-~aG~~VId~sa~~R  116 (359)
T 1xyg_A           81 STVDAVFCCLPHGTTQ--EI---IKEL-PTALKIVDLSADFR  116 (359)
T ss_dssp             GGCSEEEECCCTTTHH--HH---HHTS-CTTCEEEECSSTTT
T ss_pred             cCCCEEEEcCCchhHH--HH---HHHH-hCCCEEEECCcccc
Confidence            6899999999865542  22   2334 66788889888654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.59  E-value=0.54  Score=45.38  Aligned_cols=42  Identities=24%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             cceEEEEcC-C-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          308 VRKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       308 ~~kI~IIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      -++|.|.|+ | -+|.++|..|++.|++|++.+++++.++...+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD   65 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence            357889998 8 49999999999999999999999988776543

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=93.59  E-value=0.11  Score=53.00  Aligned_cols=70  Identities=11%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||+|||+|.||.. .+..+... +++|+ ++|++  ..+...+.        ..            ...+...+++ +.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~--------~~------------~~~~~~~~~~~~l   60 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAP--------FK------------EKGVNFTADLNEL   60 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHH--------HH------------TTTCEEESCTHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHh--------hC------------CCCCeEECCHHHH
Confidence            58999999999984 55555554 67765 78887  21111110        00            0123455666 44


Q ss_pred             CC--CCCEEEEeccCChH
Q 007805          385 FK--DVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~~--~aDlVIeavpe~~~  400 (589)
                      ++  +.|+|++|+|....
T Consensus        61 l~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A           61 LTDPEIELITICTPAHTH   78 (349)
T ss_dssp             HSCTTCCEEEECSCGGGH
T ss_pred             hcCCCCCEEEEeCCcHHH
Confidence            44  48999999996554

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.53  E-value=0.1  Score=54.73  Aligned_cols=64  Identities=20%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh----------CCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805          309 RKVAVIGGGLMGSGIATAHIL----------NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~----------~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  377 (589)
                      -+|+|||+|.||+.++..+.+          .+++| .++|+++++.+..           .              ....
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~--------------~~~~   65 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------A--------------GGLP   65 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------H--------------TTCC
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------c--------------ccCc
Confidence            479999999999999987764          24444 4778888764331           0              1123


Q ss_pred             ccCCc-cCC--CCCCEEEEeccC
Q 007805          378 GVLDY-SEF--KDVDMVIEAVIE  397 (589)
Q Consensus       378 ~~~~~-~~~--~~aDlVIeavpe  397 (589)
                      +++|+ +.+  .+.|+|++|+|.
T Consensus        66 ~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           66 LTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             EESCTHHHHTCTTCCEEEECCCS
T ss_pred             ccCCHHHHhcCCCCCEEEEcCCC
Confidence            45666 334  368999999985

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=93.51  E-value=0.022  Score=53.68  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=48.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .+|+|||+|.+|..++..+.. .|++++ ++|.++++....            ..|          . .+...+++ +.+
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g----------v-~V~~~~dl~ell  137 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP------------VRG----------G-VIEHVDLLPQRV  137 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE------------ETT----------E-EEEEGGGHHHHS
T ss_pred             CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhh------------hcC----------C-eeecHHhHHHHH
Confidence            689999999999999985222 277654 779998754321            001          0 11123444 333


Q ss_pred             C-CCCEEEEeccCChHHHHHHHHHHHH
Q 007805          386 K-DVDMVIEAVIESVPLKQKIFSELEK  411 (589)
Q Consensus       386 ~-~aDlVIeavpe~~~~k~~v~~~l~~  411 (589)
                      + +.|.|++|+|  ....+++...+.+
T Consensus       138 ~~~ID~ViIA~P--s~~~~ei~~~l~~  162 (211)
T 2dt5_A          138 PGRIEIALLTVP--REAAQKAADLLVA  162 (211)
T ss_dssp             TTTCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             HcCCCEEEEeCC--chhHHHHHHHHHH
Confidence            3 6899999999  3334466555544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.46  E-value=0.28  Score=47.50  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~II-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      .|+++| | ++-+|.++|..|++.|.+|++.|++++.+++..+.
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~   52 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT   52 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            356666 5 47789999999999999999999999988776543

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=93.40  E-value=0.031  Score=55.40  Aligned_cols=92  Identities=17%  Similarity=-0.002  Sum_probs=59.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ..||+|+|+ |.||..++..+.+.|++ .++.+||.....             +            ...+....++ +..
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-------------~------------i~G~~vy~sl~el~   60 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM-------------E------------VLGVPVYDTVKEAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-------------E------------ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc-------------e------------ECCEEeeCCHHHHh
Confidence            368999998 99999999999988998 556666642100             0            0123344444 333


Q ss_pred             C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      +  ++|++|+++|  ++...+++.+..+. .-..++ ..|++++..
T Consensus        61 ~~~~~Dv~Ii~vp--~~~~~~~~~ea~~~-Gi~~vV-i~t~G~~~~  102 (288)
T 1oi7_A           61 AHHEVDASIIFVP--APAAADAALEAAHA-GIPLIV-LITEGIPTL  102 (288)
T ss_dssp             HHSCCSEEEECCC--HHHHHHHHHHHHHT-TCSEEE-ECCSCCCHH
T ss_pred             hcCCCCEEEEecC--HHHHHHHHHHHHHC-CCCEEE-EECCCCCHH
Confidence            4  7999999998  66666777776553 223333 345566654

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=93.40  E-value=0.53  Score=50.85  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -.++++-.+.-.+.++.+++. ++-+|.|.=. +.|..|.+-++          ....+....++ .++.+...|+|+.|
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pGf~~G~~aE~----------~Gi~~~gAk~l-~a~a~a~VP~itvI  453 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TGIDVGDEAEK----------AELLGLGQSLI-YSIENSKLPSLEIT  453 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHHHCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CCCCCCHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            368999999999999988764 4666666433 34666654321          11233344555 67899999999999


Q ss_pred             CCcccchhhHHhhhc-------CEEEEeCCceEeccccccCCCCChhhhhhHh-hhc------CH----------HHHHH
Q 007805          106 EGLALGGGLELAMGC-------HARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLV------GL----------SKAIE  161 (589)
Q Consensus       106 ~G~a~GgG~~lala~-------D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-~~~------G~----------~~a~~  161 (589)
                      -|.+.|||. +++++       |+++|.++|+++       .+++-|....+- +.+      |.          ....+
T Consensus       454 ~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (588)
T 3gf3_A          454 IRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQM  525 (588)
T ss_dssp             SSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHH
T ss_pred             cCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHH
Confidence            999988775 44443       377777766665       444444433332 221      10          01111


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      +-   +..++..|-+.|+||.|+++.+.......+.....+.|
T Consensus       526 y~---~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          526 YT---DKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HH---HTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred             HH---HhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence            11   13588899999999999999998887777776655554

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=93.37  E-value=0.068  Score=53.82  Aligned_cols=37  Identities=16%  Similarity=0.102  Sum_probs=26.5

Q ss_pred             HcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHH
Q 007805          510 SLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATS  547 (589)
Q Consensus       510 ~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~  547 (589)
                      ++|.+.+++=+-.+..||.- |=-..|.-|+|...++.
T Consensus       183 ~~g~~f~~~l~~Aq~~GyaE-~DP~~Dv~G~D~a~Kl~  219 (325)
T 3ing_A          183 ANGRSLRDVVDDAIKKGIAE-SNPQDDLNGLDAARKSV  219 (325)
T ss_dssp             HTTCCHHHHHHHHHHHTCSC-SSTHHHHTTHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcCCCC-CCcccccCChhHHHHHH
Confidence            78999888766666666631 22268999999988754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.29  E-value=0.055  Score=55.12  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      ..|.|||+|.+|.++|..|+++|++|+++|..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            47999999999999999999999999999974

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=93.28  E-value=0.52  Score=45.04  Aligned_cols=42  Identities=26%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      -++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK   51 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            357788886 889999999999999999999999988776544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.22  E-value=0.48  Score=45.11  Aligned_cols=41  Identities=24%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence            56778886 889999999999999999999999988776544

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.10  E-value=0.72  Score=44.53  Aligned_cols=41  Identities=22%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAK   53 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence            56778886 789999999999999999999999988776544

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.09  E-value=0.05  Score=59.57  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .+|.|||+|-+|+.++..|+..|+ +++++|.+.
T Consensus        18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            589999999999999999999998 899999764

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.08  E-value=0.16  Score=51.67  Aligned_cols=104  Identities=25%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHhCC-CeEEEEe-CChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 007805          308 VRKVAVIG-GGLMGSGIATAHILNN-IYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS  383 (589)
Q Consensus       308 ~~kI~IIG-~G~mG~~iA~~l~~~G-~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~  383 (589)
                      +.||+|+| .|.+|..+...|..+. ++|+.+. .+.+.-+.    +...+.. ...+.+....     ..+.+.+ +.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~----~~~~~~~-~~~~~~~~~~-----~~~~~~~~d~~   73 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKK----YKDAVKW-IEQGDIPEEV-----QDLPIVSTNYE   73 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSB----HHHHCCC-CSSSSCCHHH-----HTCBEECSSGG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCC----HHHhcCc-ccccccccCC-----ceeEEeeCCHH
Confidence            46899999 7999999999888764 4776663 22111110    0000000 0000011000     1122211 334


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      .++++|+||+|+|  .....++...+   +..++.++++++..
T Consensus        74 ~~~~vDvVf~atp--~~~s~~~a~~~---~~aG~~VId~s~~~  111 (350)
T 2ep5_A           74 DHKDVDVVLSALP--NELAESIELEL---VKNGKIVVSNASPF  111 (350)
T ss_dssp             GGTTCSEEEECCC--HHHHHHHHHHH---HHTTCEEEECSSTT
T ss_pred             HhcCCCEEEECCC--hHHHHHHHHHH---HHCCCEEEECCccc
Confidence            4578999999998  33334444443   34566678888754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=93.05  E-value=0.05  Score=55.11  Aligned_cols=73  Identities=15%  Similarity=0.072  Sum_probs=46.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEE-EEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.||+|||+|.+|...+..+ ..+++|+ ++|+++ ++.+++.+.        .++-.+          .....+|+ +.
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~l   62 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKA--------ISEMNI----------KPKKYNNWWEM   62 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHH--------HHTTTC----------CCEECSSHHHH
T ss_pred             ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHH--------HHHcCC----------CCcccCCHHHH
Confidence            35899999999998777776 5677766 789987 344443221        111000          02345666 33


Q ss_pred             C--CCCCEEEEeccCCh
Q 007805          385 F--KDVDMVIEAVIESV  399 (589)
Q Consensus       385 ~--~~aDlVIeavpe~~  399 (589)
                      +  .+.|+|++|+|...
T Consensus        63 l~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A           63 LEKEKPDILVINTVFSL   79 (337)
T ss_dssp             HHHHCCSEEEECSSHHH
T ss_pred             hcCCCCCEEEEeCCcch
Confidence            4  35899999998443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=92.98  E-value=0.041  Score=55.62  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHh---CCCeEEEEeCCh
Q 007805          308 VRKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~---~G~~V~~~d~~~  341 (589)
                      |.+|.|||+|..|.+.|..|++   .|++|+++|.++
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            4689999999999999999999   999999999763

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=92.98  E-value=0.16  Score=51.82  Aligned_cols=33  Identities=36%  Similarity=0.516  Sum_probs=25.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC----CeEE-EEeCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN----IYVV-LKEVN  340 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~-~~d~~  340 (589)
                      +-||+|||+|.||+.++..+.+..    ++|+ ++|.+
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~   41 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAE   41 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSS
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            358999999999999999998863    4543 45643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.93  E-value=0.046  Score=55.93  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      -|.|||+|.-|.+.|..|+++|++|+++|+.++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            399999999999999999999999999998653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=92.81  E-value=0.043  Score=58.67  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |++|.|||+|.-|.+-|..|+++|++|++++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            68999999999999999999999999999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.80  E-value=0.35  Score=51.18  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .+++|.|+|+|.+|..+|..|- .+++|.+++.|+++++...+.+.+   ..+=.|..+..+.          -..+-+.
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~---~~Vi~GD~td~~~----------L~ee~i~  299 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELEN---TIVFCGDAADQEL----------LTEENID  299 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTT---SEEEESCTTCHHH----------HHHTTGG
T ss_pred             cccEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCC---ceEEeccccchhh----------HhhcCch
Confidence            4588999999999999999874 569999999999998876442211   0011111110000          0004578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ++|++|-++..|-  ..-+...+++.+....+++
T Consensus       300 ~~D~~ia~T~~De--~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          300 QVDVFIALTNEDE--TNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             GCSEEEECCSCHH--HHHHHHHHHHHTTCSEEEE
T ss_pred             hhcEEEEcccCcH--HHHHHHHHHHHcCCccccc
Confidence            9999998876433  2223334555566555655

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.73  E-value=0.067  Score=48.47  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      .+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999999999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.72  E-value=0.73  Score=44.38  Aligned_cols=40  Identities=10%  Similarity=-0.002  Sum_probs=32.9

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      |.+-|-|++   -+|.++|..|++.|.+|++.+++++.++...
T Consensus         7 K~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            7 KTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELE   49 (256)
T ss_dssp             CEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            445566863   4899999999999999999999988776653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=92.72  E-value=0.66  Score=44.97  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      ++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   47 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE   47 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45777786 7899999999999999999999999887775443

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.71  E-value=0.65  Score=44.91  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=35.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   51 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESA   51 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56778885 7899999999999999999999999887775443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=92.70  E-value=0.08  Score=51.82  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC--CCeEEEEeCChHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN--NIYVVLKEVNSEYLL  345 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~  345 (589)
                      ++|.|.|+ |.+|+.++..|++.  |++|++.+++++..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46899997 99999999999998  999999999876543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.67  E-value=0.18  Score=54.96  Aligned_cols=82  Identities=16%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             CCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-----------------HHHHHHHHHHHHHhhHhcCC
Q 007805          301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-----------------LLKGIKTIEANVRGLVTRGK  363 (589)
Q Consensus       301 ~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-----------------~~~~~~~~~~~~~~~~~~g~  363 (589)
                      .+..... ++|.|+|.|.+|..+|..|.+.|++|+++|.|++.                 +++                 
T Consensus       342 ~~~~~~~-~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~-----------------  403 (565)
T 4gx0_A          342 IGEAPED-ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQ-----------------  403 (565)
T ss_dssp             -----CC-CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHH-----------------
T ss_pred             hcCCCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHh-----------------


Q ss_pred             CCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          364 LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                                         ..+++||.+|.++++| +....+.....+.-++-.||+
T Consensus       404 -------------------agi~~ad~vi~~~~~d-~~ni~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          404 -------------------AGIDRASGIIVTTNDD-STNIFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             -------------------HTTTSCSEEEECCSCH-HHHHHHHHHHHHHCSSSEEEE
T ss_pred             -------------------cCccccCEEEEECCCc-hHHHHHHHHHHHHCCCCEEEE

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.64  E-value=0.38  Score=44.31  Aligned_cols=93  Identities=13%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCC----
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD----  381 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~----  381 (589)
                      .+|.-||+|. | .++..+++.+  .+|+.+|++++.++.+.+.+...       |.          .++.. ..|    
T Consensus        42 ~~vLDiG~G~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~  102 (204)
T 3e05_A           42 LVMWDIGAGS-A-SVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-------VA----------RNVTLVEAFAPEG  102 (204)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH-------TC----------TTEEEEECCTTTT
T ss_pred             CEEEEECCCC-C-HHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-------CC----------CcEEEEeCChhhh
Confidence            5799999997 4 4566666665  79999999999999886654321       10          11111 111    


Q ss_pred             ccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          382 YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       382 ~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      +......|+|+...+..  ....+++++...++++..++..
T Consensus       103 ~~~~~~~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             CTTSCCCSEEEESCCTT--CHHHHHHHHHHHCCTTCEEEEE
T ss_pred             hhcCCCCCEEEECCCCc--CHHHHHHHHHHhcCCCeEEEEE
Confidence            12335689999876422  3557888999999988766543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.59  E-value=0.66  Score=44.81  Aligned_cols=41  Identities=27%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56778885 889999999999999999999999887766433

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.56  E-value=0.066  Score=55.52  Aligned_cols=35  Identities=31%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      -.+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            35799999999999999999999999999998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.54  E-value=0.55  Score=48.66  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+|.+|...++.+...|. +|++.|.++++++.+
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  254 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA  254 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            579999999999998888888899 899999999988775

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.51  E-value=0.17  Score=49.91  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.1

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCC-CeEEEEeCChHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYL  344 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~  344 (589)
                      .++|.|.|+ |.+|+.++..|++.| ++|++.+++++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~   43 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK   43 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH
Confidence            368999998 999999999999988 9999999997654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.50  E-value=0.76  Score=45.87  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.+
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            57888886 88999999999999999999999999887765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	589
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-40
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	9e-37
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	1e-33
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	9e-30
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	5e-20
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-17
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-15
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-14
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	5e-13
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	1e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-12
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	2e-10
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-10
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	2e-08
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	6e-08
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	7e-07
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	1e-06
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	5e-06
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	2e-05

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  146 bits (368), Expect = 1e-40
 Identities = 69/173 (39%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q        S           + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  137 bits (344), Expect = 9e-37
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +T+     G+  +        VN      +  L+   +   +   VK ++++     F  
Sbjct: 8   ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ +    
Sbjct: 68  GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+  +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 239
           VVT+++L   +        +    +        +   L+   +++     +     +  P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P     +  I++    G    +  EA  F +L     S  L+ +F   +   K   V 
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307

Query: 300 D 300
           D
Sbjct: 308 D 308

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  124 bits (311), Expect = 1e-33
 Identities = 60/184 (32%), Positives = 109/184 (59%)

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           + V++ AV+G G+MG GIA         +++K++N   + +G+      + G V +G++T
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           I ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +   K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 486 VGNC 489
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 9e-30
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 365 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
               +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 482 VPVVVGNC 489
            PV   + 
Sbjct: 184 HPVSCKDT 191

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 87.4 bits (215), Expect = 5e-20
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 5/229 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
            D+   ++V   G           + + + +    KP VAAV G A+ GG  LA+ C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E           +  L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VMDEEARLGYTE-VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

Query: 184 VTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232
               + L+ ++  A ++A      +R               +  +LA L
Sbjct: 179 APPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.6 bits (192), Expect = 8e-17
 Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 15/242 (6%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+   
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70

Query: 71  ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
                      V              +    +IE C KP++AA+ G  +GGG++L   C 
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE-MMLLSKSITSEEGWKLGLI 180
            R         + E+ +G+    G  QRLP+++G    +  +   ++ + ++E    GL+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQAKK 236
             V   ++++  +        + + P      +      +  S+ E+ + +    +   +
Sbjct: 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ 250

Query: 237 TA 238
           T 
Sbjct: 251 TQ 252

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 8   MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
           +E  N G+ ++ +      N+L+  ++  L    +   S   V+ I++            
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
               +    + +V       +  V+N I +   P +AA++GLALGGGLELA+ C  R+AA
Sbjct: 69  DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
              ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+  
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 217
            +    +   ALD+A    P      R  KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 18/183 (9%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +D    +    P V NA     V  L    + A    DV  ++LTGNG     G      
Sbjct: 27  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86

Query: 71  QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
                    S     S +                 V  LI    K ++  V G A GGG 
Sbjct: 87  GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146

Query: 115 ELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+    +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 147 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 206

Query: 174 GWK 176
             +
Sbjct: 207 MHQ 209

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 67.5 bits (163), Expect = 5e-13
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +   V  DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  G
Sbjct: 5   IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           F +       G   V     ++      +++ I   K+P++AA+ G+A GGGL +++   
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             I A   +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+ 
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
            V   +E  +V+   A ++AA               G +    E  +   
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F
Sbjct: 10  EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
             +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ +
Sbjct: 69  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V     
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188

Query: 189 LLKVSRLWALDIAAR 203
             K         A  
Sbjct: 189 FQKEVWTRLKAFAKL 203

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 8e-12
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 22/243 (9%)

Query: 5   RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +++  +      II LINP   NAL       L +  E A    DV   ++  +G  FS 
Sbjct: 6   KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
           G D     K  G        + S  +         V +      K ++  + G A+G   
Sbjct: 65  GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS-KSITSEE 173
            L   C    +       L       +   GGT     L   +      L+  K    + 
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184

Query: 174 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
             + G I              +     ++  +    ++ L+      S    +++LK   
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236

Query: 232 LQA 234
           + A
Sbjct: 237 IDA 239

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEF 550
           GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 551 DKAFPDRSFQSP--LVDLLLKSGRNGNK---GF 578
            + FPDR        +D L ++ R G K   GF
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGF 93

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 58.7 bits (140), Expect = 3e-10
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 4/235 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
                   ++ +   G  D     D   ++    I+   KPI++ VEG   GG  E+ M 
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234
           ++ VV  EEL   +   A  I+ +    I  +    ++   +      +  R+Q 
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)

Query: 286 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 337
           F      +K     +I L           G  L+        ++            VV+ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 338 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 384
           E + + +++   +     I   +R +V  + K         + ++           D  E
Sbjct: 78  EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137

Query: 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 440
             +  D+VI  + +    +  I  +   A P   I+    +        + +    +D  
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196

Query: 441 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
           I   H      +   + I     +   V   L  +GKI +     +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 32/118 (27%), Positives = 56/118 (47%)

Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +       GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS 
Sbjct: 9   PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+   
Sbjct: 69  GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 6e-08
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 5  RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
          RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +    
Sbjct: 3  RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFG--LPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   PY   A  L   G             G   P+GPF+LLD  G         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 549 EFDKAFPD--RSFQSPLVDLLLKSGRNGNK---GF 578
            + +   +      SP ++ L+   + G K   GF
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGF 95

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD--IN 68
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D    
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 68

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           V    +     SL    +++  VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 69  VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
                P  T G  P    +   P+++G + A EM+
Sbjct: 129 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 1   MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
           +A P          + +E  + GV ++T+                L   F +     + K
Sbjct: 1   LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
             V+   G   S   +I+      G            + ++N +   + P++AAV G   
Sbjct: 60  --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117

Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
                  M      A   T    P    G++PG G     P ++G ++    +L  + + 
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177

Query: 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           +      G ++ V++ +ELL  +   A  IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
          +  E  +D V +ITL +P   N  +  +   +KD    A + D V+
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	589
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.9
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.9
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.81
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.77
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.75
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.68
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.65
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.65
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.63
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.57
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.56
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.34
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.33
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.26
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.23
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.22
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.18
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.18
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.15
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.75
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.73
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.71
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.68
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.6
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.59
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.59
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.57
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.51
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.46
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.44
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.38
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.38
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.36
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.21
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.19
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.03
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.02
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.01
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.96
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.94
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.89
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.88
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.88
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.87
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.84
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.84
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.81
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.76
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.75
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.69
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.69
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.67
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.65
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.58
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.56
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.49
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.44
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.38
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.33
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.31
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.02
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.99
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.99
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.89
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.86
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.84
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.81
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.79
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.77
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.75
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.73
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.69
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.66
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.6
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.57
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.54
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.52
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.5
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.5
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.43
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.42
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.42
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.38
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.37
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.34
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.33
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.3
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.25
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.24
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.22
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.22
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.07
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.98
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.96
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.94
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.92
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.87
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.86
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.86
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.83
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.8
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.79
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.77
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.71
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.68
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.59
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.52
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.43
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.4
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.36
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.33
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.26
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.25
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.21
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.15
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.05
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.01
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.92
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.86
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.85
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.85
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.8
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.79
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.75
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.73
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.68
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.65
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.64
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.62
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.6
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.6
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.6
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.52
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.36
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.35
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.31
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.3
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.23
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.2
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.11
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.06
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.05
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.95
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.91
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.91
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.72
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.71
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.68
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.61
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.58
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.52
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.48
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.44
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.42
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.41
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.39
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.32
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.25
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.16
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.12
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.95
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.84
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.78
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.6
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.55
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.54
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.54
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.51
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.49
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.48
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.45
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.4
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.36
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.3
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.26
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.24
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.24
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.16
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.12
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.08
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.07
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	92.07
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.82
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.72
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.7
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.62
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.45
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.37
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.34
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.15
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.06
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.05
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.92
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	90.84
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.72
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.68
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.6
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.58
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	90.46
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.43
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.43
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.35
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	90.29
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.26
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.06
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.03
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.9
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.86
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.84
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.83
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.83
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.75
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.67
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.58
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.49
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.3
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	88.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	88.79
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	88.3
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	88.28
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	88.14
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.61
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	87.52
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	87.48
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.45
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.07
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	87.04
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	87.02
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.58
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	86.52
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.28
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.17
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	86.15
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.13
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.1
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.71
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	85.62
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	85.51
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	85.41
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.24
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.23
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	85.22
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	85.06
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	84.82
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.75
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.54
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	84.38
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.36
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.2
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.18
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.98
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.83
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.83
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	83.54
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.47
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	83.38
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.14
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.13
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.12
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	83.09
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.05
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.76
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	82.67
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.59
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	82.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.9
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.66
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.52
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.49
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.2
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	81.17
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	81.03
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.98
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.88
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	80.75
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	80.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	80.58
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.46
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.44
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	80.43
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.29
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	80.14
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.12

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.3e-54  Score=439.08  Aligned_cols=297  Identities=26%  Similarity=0.372  Sum_probs=252.5

Q ss_pred             CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 007805            1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (589)
Q Consensus         1 M~~--~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~   76 (589)
                      |.|  +.++++..++||++|+|| +|+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus         1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   80 (310)
T d1wdka4           1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL   80 (310)
T ss_dssp             CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred             CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence            664  589998867899999998 675 7999999999999999999999999999999999999999999998764333


Q ss_pred             Cccc--ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhc
Q 007805           77 GDVS--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (589)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~  154 (589)
                      ....  ......++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i  159 (310)
T d1wdka4          81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI  159 (310)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence            2211  1112234555 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCC--ChHHHHHHHHHHHH
Q 007805          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARL  232 (589)
Q Consensus       155 G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  232 (589)
                      |..++++++++|++++|+||+++||||+|||++++.+.+.++|+++++.++......+......  ........+...+.
T Consensus       160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (310)
T d1wdka4         160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG  239 (310)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999988765433322221111  11111122223333


Q ss_pred             -HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCC
Q 007805          233 -QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV  298 (589)
Q Consensus       233 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~  298 (589)
                       ..+++.++||||.+++++++++.+.+++++|+.|++.|.+++.|++++++|++|++||.++|.++.
T Consensus       240 ~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~  306 (310)
T d1wdka4         240 FVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV  306 (310)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence             356889999999999999999999999999999999999999999999999999999999886543

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-52  Score=412.39  Aligned_cols=254  Identities=33%  Similarity=0.428  Sum_probs=229.2

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (589)
Q Consensus         2 ~~~~~~~~~~--~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (589)
                      +|++|.+++.  +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence            5889999983  3589999999996 69999999999999999999999999999999999999999999886532111 


Q ss_pred             ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                        .+......++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.++
T Consensus        81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence              1111122344 5688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++++++|++++|+||+++|||++|++++++.+.+.+++.+++..++.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~-----------------------------  208 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA-----------------------------  208 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986543                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                             .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       209 -------~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~  258 (260)
T d1mj3a_         209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK  258 (260)
T ss_dssp             -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                   55788999999999999999999999999999999999999999998863

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.8e-51  Score=410.59  Aligned_cols=257  Identities=23%  Similarity=0.311  Sum_probs=231.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---
Q 007805            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---   78 (589)
                      |++|.+++ +|||++|||||| +.|++|.+|+.+|.++++++++|+++|+|||||.|+.||+|+|++++........   
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            78999999 899999999999 5799999999999999999999999999999999999999999998754221110   


Q ss_pred             -ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ........+.++ .++.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|+.|++|+++++++++|..
T Consensus        81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence             111112233455 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      +|+++++||+.++|+||+++||||+|||++++.+++.++|++|++.|+.+++                            
T Consensus       160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  211 (269)
T d1nzya_         160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV----------------------------  211 (269)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999876543                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN  297 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~  297 (589)
                              .+|+.+++....+++++++.|.+.+..++.++|++|++++|++||+|++.+.
T Consensus       212 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~  263 (269)
T d1nzya_         212 --------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV  263 (269)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence                    4577888888899999999999999999999999999999999999987553

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-51  Score=407.94  Aligned_cols=252  Identities=20%  Similarity=0.296  Sum_probs=226.5

Q ss_pred             CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc--
Q 007805            3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (589)
                      |+++.+++ +++|++|++| ||+ .|++|.+|+.+|.++++.+++| ++++|||||.|++||+|+|++++........  
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT   78 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence            68899999 8999999997 685 7999999999999999999987 5699999999999999999999865322211  


Q ss_pred             -ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ...+....++++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~  157 (258)
T d2fw2a1          79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA  157 (258)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence             112333445666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      ++++|++||++++|++|+++||||+|||++++.+++.++|++|++.||.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~----------------------------  209 (258)
T d2fw2a1         158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLE----------------------------  209 (258)
T ss_dssp             HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986554                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~  293 (589)
                              .+|+.++.....+++++++.|.+.+..++.|+|++|++++|+|||+|+
T Consensus       210 --------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         210 --------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence                    446777777777899999999999999999999999999999999986

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-51  Score=404.17  Aligned_cols=254  Identities=21%  Similarity=0.283  Sum_probs=222.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (589)
                      |+|++|.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++ ++++++|||+|.  |++||+|+|++++...... 
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~-   77 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD-   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence            9999999999 8999999999995 79999999999999999997 457999999986  5789999999998653322 


Q ss_pred             cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (589)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~  157 (589)
                       ...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..
T Consensus        78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~  155 (261)
T d1ef8a_          78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence             223344455677 779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (589)
Q Consensus       158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (589)
                      ++++++++|+.++|+||+++||||+|||++++.+++.++|+++++.||.+++                            
T Consensus       156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~----------------------------  207 (261)
T d1ef8a_         156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999986554                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          238 APNMPQHQACLDVIEEGIVHGG--YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~--~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                              .+|+.++...+...  ...++.+...+..++.|+|++|++++|++||+|++.
T Consensus       208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~  259 (261)
T d1ef8a_         208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence                    34566666555443  455566677889999999999999999999998863

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.7e-51  Score=405.88  Aligned_cols=253  Identities=23%  Similarity=0.256  Sum_probs=225.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Cccc
Q 007805            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDVS   80 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~   80 (589)
                      |+.+.++.+++||++|+| || +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ....
T Consensus         8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   86 (263)
T d1wz8a1           8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL   86 (263)
T ss_dssp             CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred             CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence            788999987789999999 67 57999999999999999999999999999999999999999999998654222 1122


Q ss_pred             ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (589)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~  160 (589)
                      .+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+|+
T Consensus        87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~  165 (263)
T d1wz8a1          87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  165 (263)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            2333445666 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (589)
Q Consensus       161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (589)
                      +++++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++                               
T Consensus       166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~-------------------------------  214 (263)
T d1wz8a1         166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH-------------------------------  214 (263)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987654                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                           .+|++++...... .+.++.|...+..++.|+|++|++++|++||+|++
T Consensus       215 -----~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         215 -----HTKHALNHWYRSF-LPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             -----HHHHHHHHHHHTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHhCh-HHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence                 3456777666544 45688999999999999999999999999999885

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.7e-50  Score=401.00  Aligned_cols=257  Identities=19%  Similarity=0.308  Sum_probs=226.4

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (589)
                      +|+++.++..+++|++||||||+ +|+||.+|+.+|.++++.+++|+++|+|||||.|++||+|+|+.++..........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            58899987657899999999996 79999999999999999999999999999999999999999999887543322111


Q ss_pred             c----------cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhH
Q 007805           81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (589)
Q Consensus        81 ~----------~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l  150 (589)
                      .          .......++ ..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence            1          111223445 66899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCHH-HHHHHHHcCCCCCHHHHHHcCCcceecCchH-HHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHH
Q 007805          151 PRLVGLS-KAIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (589)
Q Consensus       151 ~~~~G~~-~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~-l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (589)
                      ++++|.. .+.+++++|++++|+||+++||||+|+|+++ +.+++.+++.+|++.+|.+++                   
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~-------------------  220 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------  220 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred             ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHH-------------------
Confidence            9999955 4568999999999999999999999998655 678889999999999986554                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                                       .+|+.++++...+++++++.|...+..++.|+|++|++++|+|||+|||.
T Consensus       221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~  270 (275)
T d1dcia_         221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSI  270 (275)
T ss_dssp             -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGC
T ss_pred             -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                             45677888888899999999999999999999999999999999999974

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-49  Score=394.80  Aligned_cols=249  Identities=24%  Similarity=0.327  Sum_probs=221.6

Q ss_pred             EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc--cccch
Q 007805            8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--SLMPD   84 (589)
Q Consensus         8 ~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--~~~~~   84 (589)
                      +++++++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++.........  .....
T Consensus         2 v~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~   81 (253)
T d1uiya_           2 VQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSL   81 (253)
T ss_dssp             EEEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             EEEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhh
Confidence            34545679999999996 6999999999999999999999999999999999999999999988654333211  11222


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ....++ ..+.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++| +|++++|++++|..+|++|++
T Consensus        82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l  159 (253)
T d1uiya_          82 SLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLL  159 (253)
T ss_dssp             HHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhh
Confidence            233445 678999999999999999999999999999999999999999999999877 567899999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (589)
                      ||++++|++|+++||||+|+|++++.+.+.++++++++.|+.+++                                   
T Consensus       160 ~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~-----------------------------------  204 (253)
T d1uiya_         160 TGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR-----------------------------------  204 (253)
T ss_dssp             HCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH-----------------------------------
T ss_pred             cCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999986543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (589)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~  294 (589)
                       .+|+.+++....++++++..|...+..++.|+|++|++++|++||+|++
T Consensus       205 -~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~f  253 (253)
T d1uiya_         205 -LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF  253 (253)
T ss_dssp             -HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred             -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence             4578888888999999999999999999999999999999999998863

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-50  Score=398.11  Aligned_cols=248  Identities=26%  Similarity=0.405  Sum_probs=217.6

Q ss_pred             EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCcccccchhHH
Q 007805           10 VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (589)
Q Consensus        10 ~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (589)
                      .+++||++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|+ +||+|.|++++...... ....+.....
T Consensus        11 ~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~~   89 (266)
T d1hzda_          11 EENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKIR   89 (266)
T ss_dssp             GGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHHH
T ss_pred             EecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHHH
Confidence            335789999999996 69999999999999999999999999999999985 79999999988654322 1222334455


Q ss_pred             HHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCC
Q 007805           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (589)
Q Consensus        88 ~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  167 (589)
                      .++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++||+
T Consensus        90 ~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          90 AVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            666 7799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHcCCcceecCchHHH----HHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 007805          168 SITSEEGWKLGLIDAVVTSEELL----KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~~~l~----~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (589)
                      +++|++|+++||||+|||++++.    +.+.+++++++..||.+++                                  
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~----------------------------------  214 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR----------------------------------  214 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHH----------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHH----------------------------------
Confidence            99999999999999999987654    4455555666667765443                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (589)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~  295 (589)
                        .+|++++++...++.++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       215 --~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         215 --VAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             --HHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence              55788888888999999999999999999999999999999999998864

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-48  Score=380.11  Aligned_cols=240  Identities=23%  Similarity=0.282  Sum_probs=212.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc--
Q 007805            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (589)
Q Consensus         3 ~~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--   79 (589)
                      |++|.+++ +++|++|+|||| +.|++|.+|+.+|.+++++++.|+.+ +||++|.|++||+|+|++++.........  
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            68899999 889999999999 57999999999999999999999876 89999999999999999998654332211  


Q ss_pred             -cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                       ........+++ +++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~  158 (245)
T d2f6qa1          80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK  158 (245)
T ss_dssp             HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred             cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence             11222234555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (589)
                      |++++++|++++|+||+++||||+|||++++++++.++|+++++.||.+++                             
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (245)
T d2f6qa1         159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR-----------------------------  209 (245)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999986554                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHh
Q 007805          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG  281 (589)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~  281 (589)
                             .+|++++.....++++.++.|.+.+..+|.|+|+++
T Consensus       210 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         210 -------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             -------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             -------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence                   457788888888899999999999999999999975

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-47  Score=388.42  Aligned_cols=258  Identities=24%  Similarity=0.266  Sum_probs=210.4

Q ss_pred             CCCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhh
Q 007805            1 MAAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQ   71 (589)
Q Consensus         1 M~~~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-------~~F~aG~Dl~~~~   71 (589)
                      |++..+.++.+ ++||++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.+       +.||+|.|++...
T Consensus        15 ~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~   94 (297)
T d1q52a_          15 DDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG   94 (297)
T ss_dssp             TTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------
T ss_pred             CCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhc
Confidence            34567888874 6899999999996 6999999999999999999999999999999984       4577777776654


Q ss_pred             hccCCC-------c---ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCC
Q 007805           72 KVHGAG-------D---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGV  140 (589)
Q Consensus        72 ~~~~~~-------~---~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl  140 (589)
                      ......       .   ..........++ ..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl  173 (297)
T d1q52a_          95 RSGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS  173 (297)
T ss_dssp             -----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc
Confidence            321110       0   111112233555 6789999999999999999999999999999999865 579999999999


Q ss_pred             CCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCCh
Q 007805          141 IPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL  220 (589)
Q Consensus       141 ~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~  220 (589)
                      +|+++++++|+|++|..+|+++++||++++|+||+++||||+|||++++++++.++++++++.||.+++           
T Consensus       174 ~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~-----------  242 (297)
T d1q52a_         174 FDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR-----------  242 (297)
T ss_dssp             CCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------
T ss_pred             ccccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHH-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999886544           


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805          221 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (589)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~  296 (589)
                                               .+|++++.. ...+.+....|.+.+..++.|+|++|+++||++||+|++.|
T Consensus       243 -------------------------~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~  292 (297)
T d1q52a_         243 -------------------------MLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  292 (297)
T ss_dssp             -------------------------HHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             -------------------------HHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence                                     334555543 34455566678888999999999999999999999998754

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=9.6e-47  Score=371.41  Aligned_cols=243  Identities=21%  Similarity=0.288  Sum_probs=214.9

Q ss_pred             CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCcccc
Q 007805            4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL   81 (589)
Q Consensus         4 ~~~~~~~~-~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~   81 (589)
                      +.+.++.+ ++||++|+||||+.|++|.+|+.+|.++++.+++|+++++|||+|.|+ +||+|+|++++..... .....
T Consensus         2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~-~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccc-ccccc
Confidence            56778875 578999999999999999999999999999999999999999999886 6999999998854321 11223


Q ss_pred             cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE--eccccccCCCCChhhhhhHhhhcCHHHH
Q 007805           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (589)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~--~~pe~~~Gl~p~~g~~~~l~~~~G~~~a  159 (589)
                      +....++++ .++.++|||+||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|..++
T Consensus        81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            334445666 6799999999999999999999999999999999999976  7899999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (589)
                      ++++++|++++|++|+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  209 (249)
T d1sg4a1         160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ------------------------------  209 (249)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999986554                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHH
Q 007805          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH  284 (589)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~  284 (589)
                            ..|+.+++.....+.+.++.|.+.+...+.+++.+++++
T Consensus       210 ------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         210 ------LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             ------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence                  345677777777788889999999999999999998874

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.1e-45  Score=359.59  Aligned_cols=201  Identities=27%  Similarity=0.382  Sum_probs=179.9

Q ss_pred             EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccch
Q 007805            7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPD   84 (589)
Q Consensus         7 ~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (589)
                      .++.++|+|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|.|++++...........+..
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            355558899999999995 7999999999999999999999999999999876 68999999999876543333333444


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (589)
Q Consensus        85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l  164 (589)
                      ...+++ .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..+++++++
T Consensus        82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l  159 (230)
T d2a7ka1          82 RVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIY  159 (230)
T ss_dssp             HHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHH
T ss_pred             hhhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccccc
Confidence            455666 7799999999999999999999999999999999999999999999999998765 57999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      +|++++|+||+++||||+|||++++.+++.++|+++++.||.+++
T Consensus       160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~  204 (230)
T d2a7ka1         160 QCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI  204 (230)
T ss_dssp             HCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999987654

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-44  Score=356.75  Aligned_cols=186  Identities=24%  Similarity=0.280  Sum_probs=162.5

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc-
Q 007805            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV-   79 (589)
Q Consensus         2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~-   79 (589)
                      .++.|.+++ +++|++|+||||+ .|++|.+|+.+|.++++++++|+++++|||||.|++||+|+|++++......... 
T Consensus         3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~   81 (266)
T d1pjha_           3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK   81 (266)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccc
Confidence            357899999 8999999999996 6999999999999999999999999999999999999999999998754322111 


Q ss_pred             ---------cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCCCChhhhhh
Q 007805           80 ---------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQR  149 (589)
Q Consensus        80 ---------~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~p~~g~~~~  149 (589)
                               ..+......++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~  160 (266)
T d1pjha_          82 YPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS  160 (266)
T ss_dssp             CSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence                     11122233445 67899999999999999999999999999999997 55789999999999999999999


Q ss_pred             HhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHH
Q 007805          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL  189 (589)
Q Consensus       150 l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l  189 (589)
                      |+|++|..+|++|++||++++|+||+++||||+||++++.
T Consensus       161 l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         161 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             cccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            9999999999999999999999999999999999976543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4e-44  Score=352.43  Aligned_cols=205  Identities=20%  Similarity=0.291  Sum_probs=184.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (589)
Q Consensus         1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (589)
                      |.|++|++++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~   87 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTP-HDW   87 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccc-cch
Confidence            4588999999 7899999999997 699999999999999999999999999999999999999999998754322 122


Q ss_pred             cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEe-ccccccCCCCChhhhhhHhhhcCHHH
Q 007805           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPGFGGTQRLPRLVGLSK  158 (589)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~-~pe~~~Gl~p~~g~~~~l~~~~G~~~  158 (589)
                      ..+....+.++ +.+.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++|..+
T Consensus        88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~  165 (249)
T d1szoa_          88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR  165 (249)
T ss_dssp             HHHHHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred             hhhhhhhhhhh-hhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence            23333445666 7799999999999999885 577999999999999999995 79999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (589)
Q Consensus       159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (589)
                      ++++++||++++++||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus       166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  216 (249)
T d1szoa_         166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR  216 (249)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.5e-39  Score=304.96  Aligned_cols=185  Identities=32%  Similarity=0.626  Sum_probs=180.8

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      +.|+||+|||+|+||++||..++.+|++|++||++++.++++.+++...+.+.+.++.+++...+..++++..+++.+++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~  465 (589)
                      .+||+||||+||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC
Q 007805          466 AQVILDLMTVGKIIKKVPVVVGNCT  490 (589)
Q Consensus       466 ~e~~~~~~~l~~~lG~~~v~v~d~~  490 (589)
                      +++++.+.++++.+||.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=305.80  Aligned_cols=185  Identities=33%  Similarity=0.521  Sum_probs=176.0

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC-----HHHHHHHhhcccccC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL  380 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~  380 (589)
                      +.|+||+|||+|+||++||..++.+|++|++||++++.++++.+++++.+...++++...     ....+..++++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            578999999999999999999999999999999999999999999999999999988874     344566778999999


Q ss_pred             Cc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe
Q 007805          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  459 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv  459 (589)
                      ++ +++++||+||||+||++++|+++|++|++.+++++|++||||++++++++..+.+|+||+|+|||||++.+++|||+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            98 67999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~  490 (589)
                      +++.|++++++.+.+|++.+||.|++++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999987

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=180.70  Aligned_cols=92  Identities=30%  Similarity=0.473  Sum_probs=87.1

Q ss_pred             CcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC--CCchHHHHH
Q 007805          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDL  566 (589)
Q Consensus       491 Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  566 (589)
                      |||+||++.++++||++++++|+ +|++||.++ .++|+|+|||+++|.+|||+++++++++.+.++++  +.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 999999999 78999999999999999999999999999988764  458899999


Q ss_pred             HHHcCCCCc---ccceeeC
Q 007805          567 LLKSGRNGN---KGFSFLF  582 (589)
Q Consensus       567 ~v~~g~~G~---~Gfy~y~  582 (589)
                      |+++|++|+   +|||+|.
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            999999999   9999995

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.90  E-value=1.1e-24  Score=188.18  Aligned_cols=95  Identities=38%  Similarity=0.624  Sum_probs=87.2

Q ss_pred             CcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC--CCchHHHHHHH
Q 007805          491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLL  568 (589)
Q Consensus       491 Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v  568 (589)
                      |||+||++.++++||++++++|++|++||+++..+|+|+|||+++|++|||+++++.+++++.++++  +.+++++++||
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999988999999999999999999999999999998764  34778999999


Q ss_pred             HcCCCCc---ccceeeCCCc
Q 007805          569 KSGRNGN---KGFSFLFVFS  585 (589)
Q Consensus       569 ~~g~~G~---~Gfy~y~~~~  585 (589)
                      ++|++|+   +|||+|+.++
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~  100 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADK  100 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC---
T ss_pred             HcCCccccCCcEeeEcCCCC
Confidence            9999999   9999998653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.81  E-value=2.1e-19  Score=163.96  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=119.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|+||++||..|.++|++|++||++++.++++.+           .|.++           ...++.+++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccc-----------eeeeeccccccc
Confidence            47999999999999999999999999999999998887532           23221           344566889999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC------------CCee
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL  456 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~------------~~lv  456 (589)
                      |+||+|+|  .....++++++.+.++++++|++.+|. .............++++.||+.++..            ...+
T Consensus        59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~  135 (165)
T d2f1ka2          59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (165)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence            99999999  677889999999999999998766554 33222222222347899999765522            3345


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      .+++...++++.++.+.++++.+|.+++.|
T Consensus       136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            578888999999999999999999998865

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.77  E-value=2.2e-19  Score=146.42  Aligned_cols=82  Identities=16%  Similarity=0.312  Sum_probs=78.0

Q ss_pred             ccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHHHHH
Q 007805          493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDL  566 (589)
Q Consensus       493 i~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~  566 (589)
                      |+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|+|+++++++.+. .+++++.|+++|++
T Consensus         7 IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L~~   85 (95)
T d1wdka2           7 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKLRE   85 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHHHH
Confidence            889999999999999999997  899999999 9999999   9999999999999999999885 58888889999999


Q ss_pred             HHHcCCCCcccce
Q 007805          567 LLKSGRNGNKGFS  579 (589)
Q Consensus       567 ~v~~g~~G~~Gfy  579 (589)
                      |+++|    +|||
T Consensus        86 ~~~~g----~~Fy   94 (95)
T d1wdka2          86 MAKNG----QSFF   94 (95)
T ss_dssp             HHHTT----CCSC
T ss_pred             HHHhC----cCCC
Confidence            99999    8999

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.75  E-value=6.9e-18  Score=154.67  Aligned_cols=152  Identities=16%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (589)
                      |+||+|||+|+||++||..|.++|+  +|++||+|++.++.+.+           .+.++           ...++.  .
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence            5789999999999999999999996  78999999999887633           23221           222333  3


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCC-----------
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPA-----------  450 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~-----------  450 (589)
                      ...++|+||+|+|  ++...+++.++.+++++++++++.+|+..  ...+...+  +.+|++.||....           
T Consensus        59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            3468999999999  77778899999999999999988777543  23444333  4589999995433           


Q ss_pred             -CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 007805          451 -HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (589)
Q Consensus       451 -~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~  485 (589)
                       ..+..+.++++..++++.++.+++|++.+|.+++.
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence             12445668899999999999999999999998875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.68  E-value=1.7e-16  Score=142.35  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=121.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|+||.+|+..|.++| ++|.+||+++++++...++                       ..+...++.+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence            47999999999999999998877 8999999999988765321                       12456667788899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cCCCCCH
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA  466 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~~~t~~  466 (589)
                      +|+||+||+  ++...++++++   .+.+.+++|..++.+++.+.+.++...+++..+|+.|......+..+ .+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999996  55445555444   34578889999999999999988877789999999999888777644 6777899


Q ss_pred             HHHHHHHHHHHHcCCeeE
Q 007805          467 QVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v  484 (589)
                      +..+.+.++++.+|+...
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=7.3e-17  Score=146.19  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||||||+|.||.+||..|+++||+|++||+++++++...+           .+             .....+. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhC
Confidence            47999999999999999999999999999999998877522           12             2334455 67899


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv  459 (589)
                      ||+||.|||++.+++..++  ..+.+.++++++|++.++..+-.  ++.+.+. ...+|+..+....+   ..+++.-++
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            9999999997776665555  34888899999988766544432  3333332 33455555443221   234555566


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      .|   +++.+++++++++.+|+++++++
T Consensus       137 gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 GG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHHHhcCceEECC
Confidence            66   78999999999999999998864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.65  E-value=2.7e-16  Score=140.77  Aligned_cols=147  Identities=13%  Similarity=0.065  Sum_probs=117.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|+||++|+..|.++|++|++|++++++.+...+..                       .+..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence            4799999999999999999999999999999998876642211                       23444555 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecCCCCCH
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA  466 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~~~t~~  466 (589)
                      ||+||+||+  ++..    .++.+.++++.+|+|.++++.++.+.+.+....+++..+|+.|........ +..+..+++
T Consensus        58 ~dvIilavk--p~~~----~~vl~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIK--PQLF----ETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSC--GGGH----HHHHTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecc--hHhH----HHHhhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            999999996  4433    344455778889999999999999998887777899999988877665444 556788899


Q ss_pred             HHHHHHHHHHHHcCCeeE
Q 007805          467 QVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       467 e~~~~~~~l~~~lG~~~v  484 (589)
                      +..+.++++++.+|+...
T Consensus       132 ~~~~~v~~l~~~~G~~~~  149 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTFD  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.63  E-value=4.1e-16  Score=139.74  Aligned_cols=143  Identities=16%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             CCCCCCccceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 007805          301 IGLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (589)
Q Consensus       301 ~~~~~~~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (589)
                      |++....|+||+||| +|.||++||..|.++||+|++||++++....                                 
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~---------------------------------   48 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE---------------------------------   48 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH---------------------------------
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc---------------------------------
Confidence            345667899999999 8999999999999999999999998754322                                 


Q ss_pred             CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCCC----
Q 007805          380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM----  453 (589)
Q Consensus       380 ~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~~----  453 (589)
                         +.++++|+++.++|  ......++.++.+.++++++|++.+|.-+  ...+.+.  .+.+|++.||...+...    
T Consensus        49 ---~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g  121 (152)
T d2pv7a2          49 ---SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAK  121 (152)
T ss_dssp             ---HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTT
T ss_pred             ---hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCC
Confidence               23568999999998  66677899999999999999987766433  2233333  35689999997766432    


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 007805          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (589)
Q Consensus       454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~  485 (589)
                      ..+.++++  .+++.++++.++++.+|.+++.
T Consensus       122 ~~~v~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         122 QVVVRCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             CEEEEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             cEEEEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence            34444544  4567899999999999999874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=5.4e-15  Score=133.77  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=109.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      |+||+|||+|.||++||.+|+++||+|.+||+++++.+...+           .+             .....+. +.++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG-------------ASAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT-------------CEECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------hh-------------ccccchhhhhcc
Confidence            679999999999999999999999999999999998776422           12             2233344 7789


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeee
Q 007805          387 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (589)
                      .+|+|+.|+|.+.... +++.   .+.+.+.++.+|++.++..+-.  ++.+.+. ...+|+..+....|   ..+.+.-
T Consensus        57 ~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          57 GADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             SCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             ccCeeeecccchhhHH-HHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            9999999999665544 4443   3777888888887655543322  3333332 34466665443322   3445666


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      ++.|   +++++++++++++.+|+++++++
T Consensus       136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            6666   78999999999999999998864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=1.7e-16  Score=151.10  Aligned_cols=199  Identities=14%  Similarity=0.111  Sum_probs=138.6

Q ss_pred             HHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCC--CcHHHHH------HHHhCCCeEEEEeCChHHH-HHH
Q 007805          277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG  347 (589)
Q Consensus       277 ~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~--mG~~iA~------~l~~~G~~V~~~d~~~~~~-~~~  347 (589)
                      .++..++..|..-...++..+.+.    ....+++.++|+|+  ||.+|+.      +|++.|+.|++.|.+++.. +..
T Consensus        13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~   88 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH   88 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred             chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence            345566666765544443332221    22356788999997  9999988      7899999999999998764 333


Q ss_pred             HH--------HHHHHHHhhHhcCCC---------CHHHHHHHhhcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHH
Q 007805          348 IK--------TIEANVRGLVTRGKL---------TQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSEL  409 (589)
Q Consensus       348 ~~--------~~~~~~~~~~~~g~~---------~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l  409 (589)
                      ..        .++....+..+....         ++++     ..++.++|. +++++||+||+|+|+. +.+++++++|
T Consensus        89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe-----~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I  162 (242)
T d2b0ja2          89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPED-----VGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKF  162 (242)
T ss_dssp             HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGG-----GTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHH
T ss_pred             hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHH-----CCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHH
Confidence            22        223333333333321         2111     235566776 8899999999999954 6678899999


Q ss_pred             HHhCCCCcEEEecCCCCC--HHHHhcccC-CCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805          410 EKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (589)
Q Consensus       410 ~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  486 (589)
                      .+++++++||++.+|..+  ...+.+.+. ...+|++.||+++|.......++.+ .+++|.++++.++++.+|+.++++
T Consensus       163 ~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         163 ADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             GGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             HhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999999999876555432  234555554 4568999999998876666555544 579999999999999999999876

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=1e-13  Score=123.97  Aligned_cols=142  Identities=8%  Similarity=-0.069  Sum_probs=92.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (589)
                      |+|||+|+||.+|+..|.+.++.+.+|+|+++++++..+           .+            ...+.+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~------------~~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VY------------GGKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HT------------CCCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------cc------------cccccchhhhhccCcE
Confidence            799999999999999887655556799999999887533           11            1123344477899999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC--------CeeeEecCC
Q 007805          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM--------PLLEIVRTE  462 (589)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~--------~lveiv~~~  462 (589)
                      ||.|||++.  ..+++.++   ..++.++++.+++.+.+.+..     .+..+.||..++...        ..+-.+.  
T Consensus        59 Vil~v~d~~--i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  126 (153)
T d2i76a2          59 VFVIVPDRY--IKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLE--  126 (153)
T ss_dssp             EEECSCTTT--HHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEEC--
T ss_pred             EEEeccchh--hhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEe--
Confidence            999999543  44555443   246788888888777765533     234567765433211        1112223  


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805          463 RTSAQVILDLMTVGKIIKKVPVVVGN  488 (589)
Q Consensus       463 ~t~~e~~~~~~~l~~~lG~~~v~v~d  488 (589)
                       .++++++.++++++.+|.+++++.+
T Consensus       127 -gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         127 -GDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             -CCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             -CCHHHHHHHHHHHHHHCCcEEEeCC
Confidence             3678899999999999999998854

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.33  E-value=5.5e-13  Score=122.01  Aligned_cols=155  Identities=10%  Similarity=-0.006  Sum_probs=102.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      .+|||||+|.||.+||.+|+++||+|++||+++++.+...+           .+....     .........+. +.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~~-----~~~~a~~~~~~~~~~~~   66 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKGT-----KVLGAHSLEEMVSKLKK   66 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTTS-----SCEECSSHHHHHHHBCS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hccccc-----cccchhhhhhhhhhhcc
Confidence            57999999999999999999999999999999999877532           111000     00001111122 66789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeeEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT  461 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv~~  461 (589)
                      +|.+|.++|....+ .+++..+.+.++++.++++.++..+.+  ++...+. ...+++.......+   ..+. .-++.|
T Consensus        67 ~~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG  144 (176)
T d2pgda2          67 PRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG  144 (176)
T ss_dssp             SCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred             cceEEEecCchHHH-HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC
Confidence            99999999976554 456788999999999888666544433  2333322 33345544332111   1112 224444


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeE
Q 007805          462 ERTSAQVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lG~~~v  484 (589)
                         +++++++++++++.+++++.
T Consensus       145 ---~~~~~~~~~~il~~~~~kv~  164 (176)
T d2pgda2         145 ---NKEAWPHIKAIFQGIAAKVG  164 (176)
T ss_dssp             ---CTTTHHHHHHHHHHHSCBCT
T ss_pred             ---CHHHHHHHHHHHHHHhcccC
Confidence               67789999999999998763

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=1.3e-12  Score=116.53  Aligned_cols=147  Identities=12%  Similarity=0.021  Sum_probs=93.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||.+||..|+++||+|++||++++........                        .+....+. +.+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~------------------------~~~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR------------------------TVGVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH------------------------HHTCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh------------------------cccccccHHHHHhh
Confidence            479999999999999999999999999999887765543210                        11122334 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC--CCCeeeEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH--VMPLLEIVRTER  463 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~--~~~lveiv~~~~  463 (589)
                      ||+||.|||.+..  .++..++.+..+  .++++.++..  ....+++.++. .+++..+.+.++.  .....-++.|+.
T Consensus        57 ~diIi~~v~~~~~--~~~~~~~~~~~~--~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~~  131 (152)
T d1i36a2          57 CPVVISAVTPGVA--LGAARRAGRHVR--GIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGRD  131 (152)
T ss_dssp             SSEEEECSCGGGH--HHHHHHHHTTCC--SEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEESTT
T ss_pred             cCeEEEEecCchH--HHHHHhhcccCC--ceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECCC
Confidence            9999999996543  355566666543  3444433322  23455555543 3577666655431  111222455543


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 007805          464 TSAQVILDLMTVGKIIKKVPVVVGNCT  490 (589)
Q Consensus       464 t~~e~~~~~~~l~~~lG~~~v~v~d~~  490 (589)
                        .+.++    .++.+|..+.++++.|
T Consensus       132 --~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         132 --AEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             --HHHHH----GGGGGTCEEEECSSST
T ss_pred             --HHHHH----HHHHcCCeeeEcCCCC
Confidence              34333    3688999999888766

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=8e-12  Score=111.72  Aligned_cols=144  Identities=15%  Similarity=0.091  Sum_probs=100.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (589)
                      ||||||+|.||.+||.+|.++|+.| +|++++++.....+.           +             .......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~-----------~-------------~~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH-----------c-------------CCccccccccccee
Confidence            7999999999999999999999865 677777766553221           0             11233347778899


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCC--------CCCCeeeEe
Q 007805          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPA--------HVMPLLEIV  459 (589)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~--------~~~~lveiv  459 (589)
                      ++|.++|.+.++. .....+.+...++.+++..++..+-  .++...+...    +.+|.+.|        ..+.+.-++
T Consensus        57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~~v  131 (156)
T d2cvza2          57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTVML  131 (156)
T ss_dssp             EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEEEE
T ss_pred             EEEecccchhhhh-hhhccccccccccccccccccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEEEE
Confidence            9999999766544 5567788888899888754443332  2344444321    34444433        344566677


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805          460 RTERTSAQVILDLMTVGKIIKKVPVVVG  487 (589)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~  487 (589)
                      .|   ++++++++++++ .+++++++++
T Consensus       132 gG---~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2         132 GG---PEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             ES---CHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             eC---CHHHHHHHHHHH-HhcCcCEEeC
Confidence            77   899999999999 4899998875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.22  E-value=1.8e-12  Score=119.55  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=82.5

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      +.|+||+|||+|.||+++|..|+++|++|++|+++++.++...+.-++.  .++..-.        ....+.+++++ ++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~--~yl~~~~--------l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENV--LFLKGVQ--------LASNITFTSDVEKA   74 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCT--TTSTTCB--------CCTTEEEESCHHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccc--ccccccc--------cccccccchhhhhc
Confidence            5688999999999999999999999999999999999887653321000  0001111        12467788888 67


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHh-----CCCCcEEEecCCCCCH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTIDL  428 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~-----~~~~~ii~s~ts~~~~  428 (589)
                      ++++|+||.|||  ....+.+++++.++     .+++.++++.++++..
T Consensus        75 ~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~  121 (189)
T d1n1ea2          75 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  121 (189)
T ss_dssp             HTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             cCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCcc
Confidence            899999999999  66778888887653     3566777787777643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.18  E-value=2.2e-11  Score=111.25  Aligned_cols=155  Identities=14%  Similarity=0.059  Sum_probs=103.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  384 (589)
                      +||||||+|.||.+||.+|+++||+|++||+++++.+...+           .+.....     ........+.    ..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCcccc-----ccchhhhhhhhHHHHh
Confidence            47999999999999999999999999999999999887533           2211100     0011111111    34


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhccc-CCCCcEEEecCCCCC---CCCCeeeE
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPA---HVMPLLEI  458 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~-~~~~r~ig~h~~~p~---~~~~lvei  458 (589)
                      +..++.++++++....+. .++..+...+.++.++++.++..+..  .++..+ ....+++....+..+   ..+. ..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m  143 (178)
T d1pgja2          66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF  143 (178)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence            678888999988665544 55677888889998887655544332  334433 234466665544322   1122 235


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 007805          459 VRTERTSAQVILDLMTVGKIIKKVPV  484 (589)
Q Consensus       459 v~~~~t~~e~~~~~~~l~~~lG~~~v  484 (589)
                      +.|   +++++++++++++.+++++.
T Consensus       144 vgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         144 PGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             eeC---CHHHHHHHHHHHHHHhcccc
Confidence            555   78999999999999998876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.18  E-value=2.1e-10  Score=106.88  Aligned_cols=158  Identities=15%  Similarity=0.098  Sum_probs=96.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC------HHHH--HHHhhcccccC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT------QDKA--NNALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~--~~~~~~i~~~~  380 (589)
                      +||+|||+|.+|.++|..|+++||+|++||.|++.++...            .|...      .+..  .....++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln------------~g~~p~~e~~~~~~l~~~~~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN------------QGKSPIVEPGLEALLQQGRQTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------TTCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc------------ccCCcccchhhhhhhhhhhcccccccCC
Confidence            5799999999999999999999999999999999887743            22211      0000  11124567788


Q ss_pred             Cc-cCCCCCCEEEEeccCC--------hHHHHHHHHHHHHh---CCCCcEEEecCCCCCHH--HH-----hcccCC---C
Q 007805          381 DY-SEFKDVDMVIEAVIES--------VPLKQKIFSELEKA---CPPHCILATNTSTIDLN--IV-----GEKTSS---Q  438 (589)
Q Consensus       381 ~~-~~~~~aDlVIeavpe~--------~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~~~--~~-----~~~~~~---~  438 (589)
                      +. +++++||+++.|||..        ......+...+...   ..++.+|+.-++..+-+  .+     ......   .
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~  148 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGV  148 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccc
Confidence            87 6789999999999873        33344555554443   44666655433322211  11     111111   1


Q ss_pred             CcEEEecC------------CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 007805          439 DRIIGAHF------------FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (589)
Q Consensus       439 ~r~ig~h~------------~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~  485 (589)
                      .-.+...|            .+|+..     |+.+  .+++..+.+.++++.+...++.
T Consensus       149 ~~~~~~~PE~~~~G~a~~d~~~~~~i-----ViG~--~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         149 DFGVGTNPEFLRESTAIKDYDFPPMT-----VIGE--LDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TBEEEECCCCCCTTSHHHHHHSCSCE-----EEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred             cccchhhhhhhcccchhhhhcCCCeE-----EEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence            11223222            223221     3343  3689999999999998866553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.15  E-value=1.1e-11  Score=113.60  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      +||+|||+|.||.++|..|+++||+|++||++++.++...+....    ........     ........+++. +.+++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~e~~~~   72 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAI----IAEGPGLA-----GTAHPDLLTSDIGLAVKD   72 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSE----EEESSSCC-----EEECCSEEESCHHHHHTT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCC----chhhhhhh-----hhhhhhhhhhhhHhHhcC
Confidence            689999999999999999999999999999999988775321000    00000000     000112234555 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (589)
                      ||+||+|+|..  ....+++++.++++++++|+..
T Consensus        73 aD~iii~v~~~--~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          73 ADVILIVVPAI--HHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEES
T ss_pred             CCEEEEEEchh--HHHHHHHHhhhccCCCCEEEEe
Confidence            99999999844  4678999999999999987643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.05  E-value=4e-11  Score=109.71  Aligned_cols=102  Identities=15%  Similarity=0.096  Sum_probs=72.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHH-HHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~-~~  384 (589)
                      +||+|||+|.||+++|..|+++|++|++|.++  ++.++...            .++..+... ......+..++++ ++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~------------~~~~~~~~~~~~~~~~i~~~~~~~~~   68 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS------------AGREHPRLGVKLNGVEIFWPEQLEKC   68 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH------------TTCCBTTTTBCCCSEEEECGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh------------hhhhhhhhcchhccccccccccHHHH
Confidence            58999999999999999999999999999884  33343321            111110000 0001234556676 67


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ++++|+||.|||  ....+++++++.++++++.++.. +++
T Consensus        69 ~~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~-tkg  106 (180)
T d1txga2          69 LENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI-SKG  106 (180)
T ss_dssp             HTTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC-CCS
T ss_pred             Hhccchhhcccc--hhhhHHHHHhhccccccceeccc-ccC
Confidence            899999999999  66788999999999988766653 443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.79  E-value=5.2e-09  Score=91.84  Aligned_cols=122  Identities=19%  Similarity=0.236  Sum_probs=77.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.++|..++..|+  ++.++|++++.++.-...+....   ...+          ......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~---~~~~----------~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK---VFAP----------KPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT---TSSS----------SCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc---cccC----------CCeEEEECCHHHhc
Confidence            689999999999999999999886  89999999987654222222110   0000          01223456779999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCC--CCCHHHHhcccC-CCCcEEEe
Q 007805          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS--TIDLNIVGEKTS-SQDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~~~~~~~-~~~r~ig~  444 (589)
                      +||+||.+...              +..+.+++.++|.+++++ ++++..|.  .+....+..... .+.|++|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            99999987633              245666777788888755 44443332  221122223333 34678774

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.75  E-value=6.6e-09  Score=90.82  Aligned_cols=122  Identities=20%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      -+||+|||+|.+|.++|..++..|.  +|+++|+++++++.-...+...   ....+           .....+.|++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHh
Confidence            3589999999999999999999884  8999999987654321111110   01111           123456678889


Q ss_pred             CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEE--ecCCCCCHHHHhcccCC-CCcEEEe
Q 007805          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSS-QDRIIGA  444 (589)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~~-~~r~ig~  444 (589)
                      ++||+||.+...              +..+.+++..+|.++.++ ++++  ||...+....+...... +.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~-aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFD-GIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-cEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998632              133555666778877654 4444  33222222223333333 4577774

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.73  E-value=1.5e-08  Score=88.38  Aligned_cols=121  Identities=19%  Similarity=0.243  Sum_probs=77.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.++|..++..|.  ++.++|++++.++.....+........            ....+..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~------------~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL------------FDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT------------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhc------------ccceEEecCCHHHhc
Confidence            479999999999999999999984  999999999876543222221111000            012345567778999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh----cccC-CCCcEEEe
Q 007805          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTS-SQDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~----~~~~-~~~r~ig~  444 (589)
                      +||+||.+.  |.            +..+.+++.+.|.++++ +++++..|-  |++.+.    .... .+.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtN--Pvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecC--ChHHHHHHHHHHhCCChHhEeeC
Confidence            999999986  33            23345666677888874 555543322  333222    2222 34678774

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.71  E-value=2.4e-08  Score=86.71  Aligned_cols=123  Identities=16%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..++..|.  ++.++|++++.++.-...+.+.....   .         ....+..+.|+++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~---~---------~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcccc---C---------CCCccccCCCHHHhc
Confidence            589999999999999999998875  89999999887653222222211100   0         012456677889999


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HH-HhcccC-CCCcEEEe
Q 007805          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~-~~~~~~-~~~r~ig~  444 (589)
                      +||+||.+..  .            +..+.+++..++.++. |+++++..|....+ +. +..... .+.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998773  2            2234445555666665 55666544443221 11 222223 35677774

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.69  E-value=2.5e-08  Score=86.65  Aligned_cols=122  Identities=25%  Similarity=0.343  Sum_probs=76.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      .||+|||+|.+|+++|..++..|.  ++.++|++++.++.-...++...   ...+          ...+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~---~~~~----------~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS---SFYP----------TVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG---GGST----------TCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc---ccCC----------CceeecCCCHHHhh
Confidence            589999999999999999999987  89999999887543222222110   0000          12345567788899


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC-CCCcEEEe
Q 007805          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA  444 (589)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~  444 (589)
                      +||+||.+.-  .            +..+.+++..+|.++.+.. +++..|..  .....+..... .+.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNA-IYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTS-EEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCe-EEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            9999998762  2            3445666777788887554 44333322  11112222233 35678774

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.7e-09  Score=96.90  Aligned_cols=104  Identities=12%  Similarity=-0.055  Sum_probs=73.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||+|.||+.+|..|+++|++|++|+++++..+..           ...+.-.     .........++.+.+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG-----SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS-----CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccCCc-----cccccccccchhhhhccc
Confidence            589999999999999999999999999999997643321           0000000     000112223344667899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (589)
                      |+||.|++  ..-..+.++.+.++++++++|++...++...+
T Consensus        65 D~iii~vk--a~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          65 DLLLVTLK--AWQVSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             SEEEECSC--GGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ceEEEeec--ccchHHHHHhhccccCcccEEeeccCcccHHH
Confidence            99999997  34456788999999999998887776665443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.60  E-value=4.5e-08  Score=85.35  Aligned_cols=121  Identities=19%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..++..|.  +++++|+++++++.....+.+..   ....          ......+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLE----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSS----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccC----------CccceeccCHHHhc
Confidence            799999999999999999998875  89999999987654322222211   1111          01123456778999


Q ss_pred             CCCEEEEeccC------------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCC-HHH-HhcccC-CCCcEEE
Q 007805          387 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATNTSTID-LNI-VGEKTS-SQDRIIG  443 (589)
Q Consensus       387 ~aDlVIeavpe------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~~-~~~~~~-~~~r~ig  443 (589)
                      +||+||.+...                  +..+.+++.+.+.+++ |+++++..|-... ++. +..... .+.|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999997531                  1233445555666665 5666654443322 122 222333 2456776

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.59  E-value=4.4e-08  Score=85.13  Aligned_cols=102  Identities=14%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||+|||+|.+|.++|..++..+. ++.++|++++..+.....+.....            .......+..+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~------------~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc------------ccCCCCEEEecCcHHHhcC
Confidence            589999999999999999998876 999999998865543222211100            0001123556778899999


Q ss_pred             CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +|+||.+...              +..+.+++..+|.++.+ +++++..|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvt  118 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVN  118 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECS
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeC
Confidence            9999998832              12244566666777765 45555433

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.59  E-value=5.9e-08  Score=85.67  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|+++|..++..|+  ++.++|++++..+.-...+...   ....+          ...+....+++.++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~----------~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQ----------TPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCC----------CSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccC----------CCeEEeccchhhcc
Confidence            699999999999999999999997  8999999987764322222210   00101          02234456678999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+||.+.-.              +..+.+++..+|.++.+ +++++..|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvt  137 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVS  137 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECS
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeC
Confidence            99999986622              33355666677888765 45554333

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=7.6e-08  Score=83.37  Aligned_cols=98  Identities=21%  Similarity=0.264  Sum_probs=65.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|||+|.+|.++|..++..+.  ++.++|+++++++.-...+....   .-..           .....+.++++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---~~~~-----------~~~~~~~~~~~~~   66 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---PFTR-----------RANIYAGDYADLK   66 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSC-----------CCEEEECCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---cccc-----------cccccCCcHHHhc
Confidence            489999999999999999998875  89999999887654222222110   0001           1112345678899


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +||+||.+.-  .            +..+.+++.+.+.++++. ++++.
T Consensus        67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~-aiviv  114 (140)
T d1a5za1          67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD-SIVIV  114 (140)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCC-cEEEE
Confidence            9999999862  2            333455666778888754 45543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.51  E-value=9.4e-08  Score=84.16  Aligned_cols=125  Identities=21%  Similarity=0.318  Sum_probs=77.0

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .-+||+|||+|.+|.++|..++..++ +++++|++++.++.....+..... .....           ..+..++++ ++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~-~~~~~-----------~~~~~~~~~~~~   73 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTS-VVDTN-----------VSVRAEYSYEAA   73 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH-HTTCC-----------CCEEEECSHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcc-ccCCe-----------eEEeccCchhhh
Confidence            45799999999999999999988886 899999999876554333332211 01100           123445555 57


Q ss_pred             CCCCCEEEEeccC-------------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCC-HH-HHhcccC-CCCcEE
Q 007805          385 FKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTS-SQDRII  442 (589)
Q Consensus       385 ~~~aDlVIeavpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~-~~~~~~~-~~~r~i  442 (589)
                      +++||+||.+...                   +..+.+++..++.+++++ ++++..|.... +. .+.+... .+.|++
T Consensus        74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rVi  152 (154)
T d1pzga1          74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMIC  152 (154)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred             hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcEe
Confidence            8999999997721                   123556677778877765 55544333221 12 2222223 345777


Q ss_pred             Ee
Q 007805          443 GA  444 (589)
Q Consensus       443 g~  444 (589)
                      |+
T Consensus       153 G~  154 (154)
T d1pzga1         153 GM  154 (154)
T ss_dssp             EC
T ss_pred             cC
Confidence            74

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.46  E-value=1.4e-07  Score=81.91  Aligned_cols=101  Identities=17%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHH--HHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYL--LKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      +||+|||+ |.+|.++|..++..|.  ++.++|++++..  +.....+....   .....-.       .-.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~---~~~~~~~-------~~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTRSDA-------NIYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSCCCC-------EEEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc---cccccCC-------ccccCCcchHH
Confidence            47999995 9999999999999985  999999986432  21111121111   0000000       00122345678


Q ss_pred             CCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805          384 EFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       384 ~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ++++||+||.+.  |.            +..+.+++..+|.++.+ +.|++
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv  120 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV  120 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence            999999999985  32            23344556667778875 45553

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.44  E-value=2.4e-07  Score=85.06  Aligned_cols=106  Identities=22%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC--CHHHHHHHh----hcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--TQDKANNAL----KMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~----~~i~~~~~~  382 (589)
                      +||+|||+|.+|.++|..++ .|++|++||+|+++++...+            |..  .+...+..+    ..+..+++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~------------g~~p~~e~~l~~~~~~~~~~~~~~~~~   67 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINN------------GLSPIQDEYIEYYLKSKQLSIKATLDS   67 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHT------------TCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhh------------cccccchhhHHHHhhhhhhhhhccchh
Confidence            57999999999999998776 69999999999998877532            221  111112111    233344444


Q ss_pred             -cCCCCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          383 -SEFKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       383 -~~~~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                       .+..++|+|+.|+|...+         ......+.+... .++.+++. .|++++.
T Consensus        68 ~~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pg  122 (196)
T d1dlja2          68 KAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIG  122 (196)
T ss_dssp             HHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTT
T ss_pred             hhhhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCce
Confidence             557899999999988432         233444445544 44555543 3444443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.42  E-value=7.3e-08  Score=83.62  Aligned_cols=120  Identities=21%  Similarity=0.334  Sum_probs=68.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc-ccccCCccCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  385 (589)
                      +||+|||+|.+|+++|..++..+.  ++.++|++++.++.-...        +......       ... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D--------l~~~~~~-------~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGLPF-------MGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSCCC-------TTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee--------eccCccc-------CCCeeEeeCcHHHh
Confidence            589999999999999999999986  899999998764321111        1111000       011 1234466889


Q ss_pred             CCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCC-HH-HHhcccC-CCCcEEEe
Q 007805          386 KDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTS-SQDRIIGA  444 (589)
Q Consensus       386 ~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~-~~~~~~~-~~~r~ig~  444 (589)
                      ++||+||.+.  |.            +..+.+++.+++.++.++ ++++..|.... ++ .+..... .+.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH-GVILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCS-CEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCC-ceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            9999999984  32            233445566667777754 44443332211 12 2223333 34578774

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=2.1e-07  Score=82.05  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      -.||+|||+|.+|.++|..++..|+  ++.++|++++.++.-...+...   ....+          ...+....+++++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~   85 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVS   85 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhh
Confidence            3689999999999999999999986  8999999987755322222211   00101          0223445677889


Q ss_pred             CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+||.+...              +..+.+++..+|.++. ++.+++..|.
T Consensus        86 ~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtN  137 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTN  137 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSS
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCC
Confidence            999999987632              2334444445566665 4555554443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.38  E-value=5e-07  Score=78.87  Aligned_cols=123  Identities=20%  Similarity=0.336  Sum_probs=75.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      .||+|||+|..|+++|..++..+. ++.++|++++..+.....+.+... . ...          ...+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~-~-~~~----------~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV-M-AYS----------NCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH-H-HTC----------CCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc-c-cCC----------CcEEEecccccccCC
Confidence            589999999999999998888875 899999998876543332322110 0 000          012344566789999


Q ss_pred             CCEEEEecc--CC-----------------hHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHH-hcccC-CCCcEEEe
Q 007805          388 VDMVIEAVI--ES-----------------VPLKQKIFSELEKACPPHCILATNTSTIDL-NIV-GEKTS-SQDRIIGA  444 (589)
Q Consensus       388 aDlVIeavp--e~-----------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~-~~~~~-~~~r~ig~  444 (589)
                      ||+||.+.-  ..                 ..+.+++..++.+++ |+++++..|....+ +.+ ..... .+.|++|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            999998763  21                 124455556677776 45665544332221 222 22222 35677774

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=3.3e-06  Score=75.32  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCCcHHHHH--HHHhC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~--~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .||+|||+|..|.+.+.  .++..    +.+++++|+++++++.....+.+....+-.            .-++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~------------~~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA------------DLKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTC------------CCEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCC------------CeEEEEeCCh
Confidence            48999999999987543  24332    469999999999887644433333221111            1245667777


Q ss_pred             -cCCCCCCEEEEec
Q 007805          383 -SEFKDVDMVIEAV  395 (589)
Q Consensus       383 -~~~~~aDlVIeav  395 (589)
                       +++++||+||.++
T Consensus        71 ~eaL~dad~Vv~~~   84 (171)
T d1obba1          71 DDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             hhcccCCCeEeeec
Confidence             7899999999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.19  E-value=8e-07  Score=80.19  Aligned_cols=108  Identities=12%  Similarity=0.054  Sum_probs=77.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|+|||.|.+|..+|..+...|.+|+.||+++..                  +            ......++ +.+++
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhhc
Confidence            68999999999999999999999999999987531                  0            11233455 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCC-CCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHF  446 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~-~~r~ig~h~  446 (589)
                      ||+|+.++|-..+.+.-+=.+..+.++++++++..+-+  +..+.+...+.. ...-.+...
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV  154 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV  154 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESC
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEec
Confidence            99999999987765554446677788999998866554  444555554432 223345553

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.04  E-value=1e-05  Score=69.47  Aligned_cols=101  Identities=19%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCC--eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~--~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      .||+||| +|.+|+++|..++..|.  ++.++|++..  ..+.-...+....   .-...          ..+ .+.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~---~~~~~----------~~i-~~~~~~   66 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI---AYDSN----------TRV-RQGGYE   66 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH---TTTCC----------CEE-EECCGG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc---cccCC----------ceE-eeCCHH
Confidence            3899999 69999999999999986  8999998542  2221111121111   00010          112 245678


Q ss_pred             CCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          384 EFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       384 ~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++++||+||.+.  |.            +..+.+++..+|.++. |+.+++..|.
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtN  120 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSN  120 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCS
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecC
Confidence            899999999875  22            2334555556677666 4555554443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.03  E-value=2.2e-06  Score=77.78  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q 007805          309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (589)
Q Consensus       309 ~kI~II-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~  352 (589)
                      +||+|| |+|.||.+||..|+++||+|++|+|++++++...+++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            479999 78999999999999999999999999999888766554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.02  E-value=6e-06  Score=71.28  Aligned_cols=102  Identities=14%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (589)
                      .||+|||+ |.+|+++|..++..|.  +++++|+++.+.+. ..         .......    ......+...++++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~D---------l~~~~~~----~~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-AD---------LSHIETR----ATVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-HH---------HTTSSSS----CEEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-HH---------Hhhhhhh----cCCCeEEcCCChHHHh
Confidence            38999995 9999999999999986  79999998754222 11         1111000    0000112223334778


Q ss_pred             CCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          386 KDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       386 ~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ++||+||.+.-  .            +..+.+++..++.++. |+++++..|..
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNP  119 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNP  119 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSC
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCc
Confidence            99999998753  2            3445567777788885 55666554443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=1.7e-05  Score=70.01  Aligned_cols=75  Identities=16%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCcHHHHH-HHHh-C-C---CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIAT-AHIL-N-N---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~-~l~~-~-G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .||+|||+|..|.+.+. .+.. . .   -+++++|+++++++.....+.......   +         ....+..++|.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCCh
Confidence            58999999999987543 2332 2 2   389999999998775333222221110   0         01245566676


Q ss_pred             -cCCCCCCEEEEec
Q 007805          383 -SEFKDVDMVIEAV  395 (589)
Q Consensus       383 -~~~~~aDlVIeav  395 (589)
                       +++++||+||.++
T Consensus        72 ~eal~~AD~Vvita   85 (167)
T d1u8xx1          72 EEAFTDVDFVMAHI   85 (167)
T ss_dssp             HHHHSSCSEEEECC
T ss_pred             hhccCCCCEEEECC
Confidence             8899999999987

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.96  E-value=1.7e-06  Score=79.03  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.+|..+|..+..-|.+|+.||+........                          . .....++ +.+++
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~--------------------------~-~~~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK--------------------------K-GYYVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH--------------------------T-TCBCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCccccccccc--------------------------c-eeeeccccccccc
Confidence            689999999999999999999999999999875432110                          0 1122344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-..+...+.
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  147 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  147 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence            99999999977765554445666788999988654433  33445555443

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=1.7e-05  Score=71.13  Aligned_cols=135  Identities=15%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           28 LAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~---~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      ++.++..++...+..++.+   +.+... |.+      .|+|+..                +..++ +.+..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS------~GG~v~~----------------gl~i~-d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISLY-INS------PGGSISA----------------GMAIY-DTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEE------CCBCHHH----------------HHHHH-HHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeC------CCCCHHH----------------HHHHH-HHHHhhccceeee
Confidence            7888888888877555432   334333 343      3444332                22455 6788999999999


Q ss_pred             eCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhh---------------hhHhhhc--CHHHHHHHHHc
Q 007805          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLV--GLSKAIEMMLL  165 (589)
Q Consensus       105 v~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~--G~~~a~~l~lt  165 (589)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+-+...|..-...-.               ..+.+..  ......+++-.
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~  157 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR  157 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence            99999999999999999  89999999999887765542111000               0112222  33445566777


Q ss_pred             CCCCCHHHHHHcCCcceecCc
Q 007805          166 SKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       166 g~~~~a~~A~~~Glv~~vv~~  186 (589)
                      ...++|+||+++||||+|+..
T Consensus       158 d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         158 DRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TCEEEHHHHHHHTSCSEECSC
T ss_pred             CceecHHHHHHcCCCcEEecC
Confidence            888999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=6e-06  Score=70.36  Aligned_cols=91  Identities=18%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc-----
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-----  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-----  382 (589)
                      |++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.           +.+.          ..+.. .++.     
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-----------~~~~----------~~~~gd~~~~~~l~~   59 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT----------HAVIANATEENELLS   59 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-----------TTCS----------EEEECCTTCTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-----------HhCC----------cceeeecccchhhhc
Confidence            5689999999999999999999999999999999988752           1221          00000 1111     


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ..+.+||.||.+++++... ..+...+.+..+...|++-
T Consensus        60 a~i~~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          60 LGIRNFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HTGGGCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred             cCCccccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEee
Confidence            2368899999999977643 2233344455555556653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=2.9e-05  Score=68.84  Aligned_cols=124  Identities=17%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             ceEEEEcCCCCcHH--HHHHHHhC----CCeEEEEeCChHHHHH-HHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805          309 RKVAVIGGGLMGSG--IATAHILN----NIYVVLKEVNSEYLLK-GIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (589)
Q Consensus       309 ~kI~IIG~G~mG~~--iA~~l~~~----G~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (589)
                      .||+|||+|..|.+  ++..+...    +-+++++|++++..+. +......   .....-..        .-.+..++|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~---~~~~~~~~--------~~~~~~~td   70 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAK---RMVEKAGV--------PIEIHLTLD   70 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHH---HHHHHTTC--------CCEEEEESC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHH---HHHHhcCC--------CceeeecCC
Confidence            58999999998854  33344432    1389999999865221 1111111   11111000        023455666


Q ss_pred             c-cCCCCCCEEEEeccC----------------------------------ChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          382 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       382 ~-~~~~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      . +++++||+||.++.-                                  +..+.+++.+++.+++ |+++++..|-..
T Consensus        71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPv  149 (169)
T d1s6ya1          71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPA  149 (169)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred             chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChH
Confidence            6 778999999999842                                  2233567777888886 566665443322


Q ss_pred             CH-HHHhcccCCCCcEEEe
Q 007805          427 DL-NIVGEKTSSQDRIIGA  444 (589)
Q Consensus       427 ~~-~~~~~~~~~~~r~ig~  444 (589)
                      .+ +........+.|++|+
T Consensus       150 dv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         150 GMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHCCCCCEEee
Confidence            21 2222222234577774

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=2.1e-05  Score=69.32  Aligned_cols=73  Identities=18%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh--C----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~--~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      +||+|||+|..|.+.+.....  .    +.++.++|+++++++.... +.+..   ....           ..+..+++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~~~---~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKRL---VKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHHH---HTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHHhh---hccC-----------ceEEEecCc
Confidence            479999999999988854332  1    3589999999998764322 22111   1111           223444554


Q ss_pred             -cCCCCCCEEEEecc
Q 007805          383 -SEFKDVDMVIEAVI  396 (589)
Q Consensus       383 -~~~~~aDlVIeavp  396 (589)
                       +++++||+||.+.-
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence             88999999999873

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.88  E-value=1.8e-06  Score=78.54  Aligned_cols=103  Identities=14%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||+|.+|..+|..+...|.+|..||+....-...            .             ..+....++ +.++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            689999999999999999999999999999864421110            0             112334455 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+.+.+.+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            99999999977665554445667789999988754444  33445555543

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1e-05  Score=72.92  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           28 LAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      ++.++...+...+..++.++   .+. +.|.+.      |+|+..                ...++ +.+..++.|+...
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~~----------------g~~i~-d~i~~~~~~v~tv   80 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSP------GGVITA----------------GMSIY-DTMQFIKPDVSTI   80 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHHH----------------HHHHH-HHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCC------CccHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence            78888899888888776433   333 333443      444322                23555 6788999999999


Q ss_pred             eCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhhh------------------Hhhhc--CHHHHHHH
Q 007805          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLV--GLSKAIEM  162 (589)
Q Consensus       105 v~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~~------------------l~~~~--G~~~a~~l  162 (589)
                      +.|.|.+.|.-+.++||  .|++.++++|-+-+...|..   |...-                  +.+..  ......++
T Consensus        81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~  157 (183)
T d1yg6a1          81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  157 (183)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999998  79999999998877765542   21111                  11111  23344455


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      +-.-..++|+||+++||||+|+..
T Consensus       158 ~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         158 TERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hccCccccHHHHHHcCCCcEEecc
Confidence            555566899999999999999864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.84  E-value=3e-06  Score=76.95  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=74.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||.|.+|..+|..+...|.+|..||+..........                        ..+....++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~~l~   99 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE------------------------LNLTWHATREDMYP   99 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHGG
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeecccccccccc------------------------ccccccCCHHHHHH
Confidence            368999999999999999999899999999986432111100                        112334454 6789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      +||+|+.++|-..+.+.-+=++....++++++++..+-+  +..+.+...+.
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~  151 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  151 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHh
Confidence            999999999977766555556777889999988654443  44455655554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=1.5e-05  Score=68.74  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHh-C--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIG-GGLMGSGIATAHIL-N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~-~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      +||+||| +|.+|+++|..++. .  +.++.++|+++.....+. .+        ......     .....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl--------~h~~~~-----~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DL--------SHIPTA-----VKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HH--------HTSCSS-----CEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HH--------HCCccc-----cCCcEEEcCCCccc
Confidence            4899999 59999999998864 3  469999998754322211 11        111000     00112233455688


Q ss_pred             CCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          385 FKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       385 ~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +++||+||.+.  |.            +..+.+++.++|.++.++. +++..|.
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~a-ivivvtN  119 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKA-CIGIITN  119 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSS
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCc-EEEEccC
Confidence            99999999876  32            3345566677788887554 4544443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=4.1e-05  Score=64.90  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.++..    ..+-.|.. +++...           ...+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~----~~vi~Gd~~~~~~l~-----------~~~i~~   65 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID----ALVINGDCTKIKTLE-----------DAGIED   65 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS----SEEEESCTTSHHHHH-----------HTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh----hhhccCcccchhhhh-----------hcChhh
Confidence            57999999999999999999999999999999999887533110    00001111 100000           023689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      +|.++.+++++.  ..-+...+...+.++.+|+...+
T Consensus        66 a~~vv~~t~~d~--~N~~~~~~~k~~~~~~iI~~~~~  100 (132)
T d1lssa_          66 ADMYIAVTGKEE--VNLMSSLLAKSYGINKTIARISE  100 (132)
T ss_dssp             CSEEEECCSCHH--HHHHHHHHHHHTTCCCEEEECSS
T ss_pred             hhhhcccCCcHH--HHHHHHHHHHHcCCceEEEEecC
Confidence            999998887543  22233445556666677764333

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.81  E-value=5.3e-05  Score=68.57  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      .++.++...+...+..++.++   .+. +.|.+.|      +|+..                +..++ +.+..++.|+..
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t   87 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT   87 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence            378888899988887665322   343 3335543      33322                23555 778899999999


Q ss_pred             EeCCcccchhhHHhhh--cCEEEEeCCceEeccccccCCCCChhhhh------hH-----------hhh--cCHHHHHHH
Q 007805          104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPGFGGTQ------RL-----------PRL--VGLSKAIEM  162 (589)
Q Consensus       104 av~G~a~GgG~~lala--~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~------~l-----------~~~--~G~~~a~~l  162 (589)
                      .+.|.|.+.|.-|.++  ||.|++.++++|-+-+...|.........      .+           ...  .......+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999888775  57999999999999888766532211110      01           111  133455666


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      +-....++|+||+++||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            777888999999999999999853

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.76  E-value=9.3e-06  Score=73.63  Aligned_cols=105  Identities=10%  Similarity=0.006  Sum_probs=73.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|||||.|.+|..+|..+...|.+|..||+..........                        .......++ +.++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHh
Confidence            378999999999999999999999999999986543222100                        112233445 5688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-+.+.+.+.
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  154 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE  154 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence            999999999987776554445677789999988754444  33345555443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.75  E-value=1.2e-05  Score=71.63  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|||+|.||..+|..|+++||+|+++|++.++++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            789999999999999999999999999999999987764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2e-05  Score=68.65  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=68.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|+|+|.|.+|.++|..+...|.+|+++|++|-..-++                        .++......-.+++..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A------------------------~~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA------------------------AMEGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------------------------HHTTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh------------------------hcCceEeeehhhhhhhc
Confidence            679999999999999999999999999999999653332                        12223333333778999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC---CCHHHHhc
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGE  433 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~  433 (589)
                      |+||.|....-.+.    .+-.+.+++++|++..++.   +.+..+.+
T Consensus        81 divvtaTGn~~vI~----~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          81 NIFVTTTGCIDIIL----GRHFEQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             SEEEECSSCSCSBC----HHHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             cEEEecCCCccchh----HHHHHhccCCeEEEEeccccceecHHHHhh
Confidence            99998886433222    3344568999998765542   44555544

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.69  E-value=2.2e-05  Score=68.96  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      -++|.|||+|.||..++..|...|+ +|++++|+.++.+...+.+          |           ......+++ +.+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHh
Confidence            3789999999999999999999998 6999999988876643211          1           111112233 567


Q ss_pred             CCCCEEEEeccCC-hHHHHHHHHHHHHhCC--CCcEEEecC
Q 007805          386 KDVDMVIEAVIES-VPLKQKIFSELEKACP--PHCILATNT  423 (589)
Q Consensus       386 ~~aDlVIeavpe~-~~~k~~v~~~l~~~~~--~~~ii~s~t  423 (589)
                      .++|+||.|++.+ +-+.++.++.....-+  ...+|++.+
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            8999999999643 2345566665544332  234666654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.69  E-value=2.9e-06  Score=77.70  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.+.....                           ..... .++ +.++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~~-~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFDY-VSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCEE-CCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchhH-HHHHHHHHh
Confidence            68999999999999999999999999999986432100                           01111 234 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      ||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+++.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence            99999999987776554445667788999988654444  33345555554

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.67  E-value=0.00017  Score=64.98  Aligned_cols=132  Identities=16%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           28 LAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~--~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      ++.++..++...+..+++.  +++. +.|.+.      |+|+..                +..++ +.+..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~------GG~v~~----------------g~ai~-d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYINSP------GGSINE----------------GLAIL-DIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEEC------CBCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCc------hhhhhH----------------HHHHH-HHHHhhCCceEEEE
Confidence            7888888988888877643  3343 333433      444432                22455 67888999999999


Q ss_pred             CCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhh------------------hHhhhcCH--HHHHHHH
Q 007805          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVGL--SKAIEMM  163 (589)
Q Consensus       106 ~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~G~--~~a~~l~  163 (589)
                      .|.|.+.|.-+++++|  .|++.++++|-+.....|..   |...                  .+.+.-|.  ....+++
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~  159 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS  159 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence            9999999999999988  69999999999988876652   2221                  12222222  3344555


Q ss_pred             HcCCCCCHHHHHHcCCcceecCc
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTS  186 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~  186 (589)
                      -.-..++|+||+++||||+|+..
T Consensus       160 ~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         160 DRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HTTCEECHHHHHHHTSCSEECCC
T ss_pred             cCCeeecHHHHHHcCCCcEEccc
Confidence            56677999999999999999853

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=1.6e-05  Score=71.59  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||.|.+|..+|..+...|.+|+.||+........            .             ..+. ..++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA------------Q-------------LGIE-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH------------H-------------HTCE-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh------------h-------------cCce-eccHHHHHh
Confidence            4789999999999999999998999999999875442221            0             0112 1234 5688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      .||+|+.++|-..+.+.-+=++....++++++++..+-+  +.-+++.+.+.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~  149 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT  149 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHh
Confidence            999999999987776554445677789999988754444  33445655554

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.58  E-value=0.00011  Score=66.30  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805           27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~---~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia  103 (589)
                      .++.++...+...+..++..   ..+...+ .+.|      +|+..                ...++ +.+..++.||..
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~G------G~v~~----------------g~~i~-d~i~~~~~~V~t   89 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPG------GVVTA----------------GLAIY-DTMQYILNPICT   89 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECC------BCHHH----------------HHHHH-HHHHHSCSCEEE
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCc------ccHHH----------------HHHHH-HHHHhhcCceEE
Confidence            47888888888877766633   2344333 4443      33221                22555 778899999999


Q ss_pred             EeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhhh-----------------Hhhhc--CHHHHHHH
Q 007805          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRLV--GLSKAIEM  162 (589)
Q Consensus       104 av~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~~-----------------l~~~~--G~~~a~~l  162 (589)
                      .+.|.|.+.|.-+.+++|  .|++.++|+|-+-+...|..-  -....                 +....  ......++
T Consensus        90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~  167 (193)
T d1tg6a1          90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA  167 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999  599999999999888766521  11111                 11111  33444455


Q ss_pred             HHcCCCCCHHHHHHcCCcceecC
Q 007805          163 MLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       163 ~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      +-.-..++|+||+++||||+|+.
T Consensus       168 ~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         168 MERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HSSCEEECHHHHHHHTSCSEECS
T ss_pred             hccCccCCHHHHHHcCCCCEEcc
Confidence            55556699999999999999983

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=1.6e-05  Score=71.97  Aligned_cols=101  Identities=17%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -++|+|||.|.+|..+|..+...|.+|+.||+......                            .......++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            47899999999999999999999999999998643110                            011222344 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (589)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-+++.+.+.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~  147 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  147 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence            999999999987776655556777889999988755544  44455655553

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=7.2e-05  Score=65.09  Aligned_cols=86  Identities=21%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|+|||.|.-|.+=|..|..+|++|++--+... ..+++.           +.             .+...+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~~-------------Gf~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AH-------------GLKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HT-------------TCEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------hh-------------ccccccHHHHhhh
Confidence            6899999999999999999999999998766543 333331           12             2333333378899


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEE
Q 007805          388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILA  420 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~  420 (589)
                      ||+|...+|  -+.-.++++ +|.++++++..+.
T Consensus        73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEE
T ss_pred             cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEE
Confidence            999999999  444558885 6999999998775

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.44  E-value=0.00011  Score=66.11  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCC------CeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G------~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (589)
                      .+++|+|||.|.-|.+=|..|..+|      ..|++-=+. ....++|.           +.|--.        ...+..
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~  103 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG  103 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence            4689999999999999999999955      456544332 23333332           222100        000111


Q ss_pred             CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       380 ~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      +-.|+++.||+|+..+|+.  .-.++|++|.++++++..+.-
T Consensus       104 ~v~EAv~~ADiVmiLlPDe--~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         104 DMWETISGSDLVLLLISDS--AQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             EHHHHHHTCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEE
T ss_pred             CHHHHHhhCCEEEEecchH--HHHHHHHHHHHhcCCCceeee
Confidence            1227789999999999944  455889999999999987753

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.38  E-value=0.00018  Score=62.56  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      .||+|||+ |.+|.++|..|++.+.       ++.++|.++..... .. +.-    ........      ....+...+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~~-l~~----~~~~~~~~------~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-DG-VLM----ELQDCALP------LLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-HH-HHH----HHHHTCCT------TEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-hh-hhh----hhcccccc------cccccccCc
Confidence            58999995 9999999999987542       57788876543221 11 000    00100000      012334444


Q ss_pred             Cc-cCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805          381 DY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       381 ~~-~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      +. ++++++|+||.+.  |.            +..+.+++..+|.++++++.+++
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~ii  126 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEE
Confidence            44 7899999999876  22            23556677777888898887443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.33  E-value=0.00039  Score=61.54  Aligned_cols=105  Identities=11%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (589)
                      .-||+|+|+ |.+|.+++..|++...       ++.++|+++..-. + +.+.-.    +.....      .....+..+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~-l-~g~~md----l~d~a~------~~~~~~~~~   91 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA-L-EGVAME----LEDSLY------PLLREVSIG   91 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH-H-HHHHHH----HHTTTC------TTEEEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch-h-cchhhh----hccccc------ccccCcccc
Confidence            458999996 9999999999997532       5677777654321 1 111100    111100      011334445


Q ss_pred             CCc-cCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          380 LDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       380 ~~~-~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++. ++++++|+||.+.  |.            +..+.+++...|.++++++++|+..+.
T Consensus        92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1          92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            554 8899999999876  22            234556666778899998886654443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.31  E-value=0.00012  Score=63.26  Aligned_cols=88  Identities=15%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +++.|+|.|..|.++|..+...|..|+++++||-+.-+|                        .++.....+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            689999999999999999999999999999999653332                        23334443333789999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      |++|.++...-.+.    .+-.+.+++++|++....
T Consensus        80 Di~vTaTGn~~vI~----~~h~~~MKdgaIl~N~GH  111 (163)
T d1v8ba1          80 DFFITCTGNVDVIK----LEHLLKMKNNAVVGNIGH  111 (163)
T ss_dssp             SEEEECCSSSSSBC----HHHHTTCCTTCEEEECSS
T ss_pred             cEEEEcCCCCcccc----HHHHHHhhCCeEEEeccc
Confidence            99999997544222    334456889998865543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00017  Score=62.74  Aligned_cols=102  Identities=17%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (589)
                      .||+|||+ |.+|.++|..|+..++       ...+++.+  .+.++.....        ......      .....+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~~   70 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGLEA   70 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------cccccccc
Confidence            58999997 9999999999998753       13344443  3332221110        111000      00122333


Q ss_pred             cCC-ccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       379 ~~~-~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      .++ ++++++||+||.+.  |.            +..+.+++..++.++++++++++..|.
T Consensus        71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            343 37899999999876  22            234555666778888888886654443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00093  Score=52.73  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.0

Q ss_pred             CccceEEEEcCCCCc-HHHHHHHHhCCCeEEEEeCChH
Q 007805          306 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG-~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ..+++|-|||.|-+| +++|..|.+.|++|+++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457899999999999 7789999999999999998754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=6.5e-05  Score=68.64  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             CccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHH
Q 007805          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (589)
Q Consensus       306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~  345 (589)
                      |.|+||.|+|+ |.+|+.++..|+++||+|++++|+++++.
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            56899999995 99999999999999999999999988643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.99  E-value=0.00056  Score=59.45  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (589)
                      -.||.|||+|.-|..=+.....-|-+|+++|.+++++++....    +...++....+++             .+ +.++
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~~~~~~~-------------~l~~~~~   94 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVELLYSNSA-------------EIETAVA   94 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEEEECCHH-------------HHHHHHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hcccceeehhhhh-------------hHHHhhc
Confidence            3689999999999999999999999999999999998775332    1111111111111             11 5678


Q ss_pred             CCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          387 DVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       387 ~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +||+||-++  |....- +-+-++..+.++++.+|++.+
T Consensus        95 ~aDivI~aalipG~~aP-~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          95 EADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             TCSEEEECCCCTTSSCC-CCBCHHHHTTSCTTCEEEETT
T ss_pred             cCcEEEEeeecCCcccC-eeecHHHHhhcCCCcEEEEee
Confidence            999999887  332210 012244566789999998754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.89  E-value=0.0027  Score=55.36  Aligned_cols=70  Identities=23%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      .||||||+|.||.. ....+.+. ++++.++|.++++.+...+.                      .+.....+|+ +.+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhc
Confidence            47999999999976 45555554 56888999999887764321                      1112234454 333


Q ss_pred             -CCCCEEEEeccCChH
Q 007805          386 -KDVDMVIEAVIESVP  400 (589)
Q Consensus       386 -~~aDlVIeavpe~~~  400 (589)
                       .+.|+|++|+|....
T Consensus        60 ~~~iD~V~I~tp~~~H   75 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVH   75 (167)
T ss_dssp             GGCCSEEEECSCGGGH
T ss_pred             ccccceeccccccccc
Confidence             368999999985543

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.86  E-value=0.0059  Score=58.03  Aligned_cols=170  Identities=12%  Similarity=0.038  Sum_probs=93.7

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.-|++.  .-++++...+.+.++++.+.+. .+-+|.|.-     |.|+.+.+-.....  ......+.+.+ + ..+.
T Consensus       108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~d-----s~Ga~~~~~~e~~~--~~~~~g~~~~~-~-a~ls  177 (287)
T d1pixa2         108 VVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYP--NRRGGGTPFFR-N-AELN  177 (287)
T ss_dssp             EEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSS--STTSTTHHHHH-H-HHHH
T ss_pred             EEEeccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEec-----CCcccCCcchhhcc--chhhHHHHHHH-H-HHHh
Confidence            3334553  3688899999999998887765 344565643     33444432111100  01112222222 2 2366


Q ss_pred             hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecc--ccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP--ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE  173 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~p--e~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~  173 (589)
                      ...+|+|++|.|.|.|||...+++||++++.+++.+.+.  .+--+..+..+........+..  ...-..+-+.+.+.+
T Consensus       178 ~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~--~~ge~~~~eeLGGa~  255 (287)
T d1pixa2         178 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIAD--MVDRTGKTEPPGAVD  255 (287)
T ss_dssp             HTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHH--HHHTTCCCCCSSBHH
T ss_pred             hcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHh--hhcccccccccccHH
Confidence            678999999999999999888888888888888887663  2222332222211111111100  000011334444554


Q ss_pred             H--HHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          174 G--WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       174 A--~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      .  ..-|.+|.+++.+   +++.+.++++.+
T Consensus       256 ~H~~~sG~~d~v~~~e---~~ai~~~r~~ls  283 (287)
T d1pixa2         256 IHYTETGFMREVYASE---EGVLEGIKKYVG  283 (287)
T ss_dssp             HHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred             HhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence            4  3469999999765   344555555443

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0035  Score=60.14  Aligned_cols=136  Identities=14%  Similarity=0.019  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~  106 (589)
                      +++++-.+.-.+.++.++.- .+-+|-|-=+++ |-.|.+-++..          ..+...+.+ ..+..+++|+|+.|-
T Consensus       131 ~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG-~~~g~~~E~~g----------~~~~~a~~~-~~~~~~~vP~i~vv~  197 (316)
T d2f9ya1         131 MPAPEGYRKALRLMQMAERF-KMPIITFIDTPG-AYPGVGAEERG----------QSEAIARNL-REMSRLGVPVVCTVI  197 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESC-SCCSHHHHHTT----------HHHHHHHHH-HHHHTCSSCEEEEEE
T ss_pred             cccHHHHHHHHHHHHHHHHc-CcceEEEEecCc-ccCCccccccc----------HHHHHHHHH-HHHHhCCCceEEEEE
Confidence            68999999988888888764 344454432222 33343322211          112223444 568899999999999


Q ss_pred             CcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805          107 GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (589)
Q Consensus       107 G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~  185 (589)
                      |-+.|||.-....+|.+++.++|+|+.      +.|.++++..+...--...|.+.    ..+++++.+++|+||+|+|
T Consensus       198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII~  266 (316)
T d2f9ya1         198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  266 (316)
T ss_dssp             EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhccc
Confidence            999999998888999999999999983      35766666655544333444443    3489999999999999995

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0023  Score=53.22  Aligned_cols=79  Identities=22%  Similarity=0.204  Sum_probs=54.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      +||+|+|+ |.||..|+..+.+.|++++. +|.+.                                        .+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------------~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------------VEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------------EEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------------HHHhc
Confidence            47999996 99999999999999998763 34321                                        14467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (589)
                      ++|+||+-..  ++...+.++...   +.+..+++.|++++-+++.
T Consensus        41 ~~DVvIDFS~--p~~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSS--PEALPKTVDLCK---KYRAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHH---HHTCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecC--HHHHHHHHHHHH---hcCCCEEEEcCCCCHHHHH
Confidence            8999999764  443344444433   3455677888888866543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.0013  Score=57.59  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      ++|.|||+|-++.+++..|.+.|. +|++++|++++.+..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            679999999999999999999997 899999999887664

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.77  E-value=0.0022  Score=52.10  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---CccCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~  385 (589)
                      ++|.|||+|..|..-|..|++.|.+|++++.....-..          .+.+.+.            ++...   +.+.+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~------------i~~~~~~~~~~dl   70 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGM------------LTLVEGPFDETLL   70 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTS------------CEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCC------------ceeeccCCCHHHh
Confidence            68999999999999999999999999999876543211          1122222            22222   22568


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHH
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELE  410 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~  410 (589)
                      .++++|+.|.. +..+...+++...
T Consensus        71 ~~~~lv~~at~-d~~~n~~i~~~a~   94 (113)
T d1pjqa1          71 DSCWLAIAATD-DDTVNQRVSDAAE   94 (113)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHHH
T ss_pred             CCCcEEeecCC-CHHHHHHHHHHHH
Confidence            89999998864 6666566555433

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.73  E-value=0.0045  Score=53.97  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            4799999999999999988889999999999999988763

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00098  Score=58.17  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=46.8

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||||||+|.||.. ....+... +++++ ++|+++++.+...+..                       .+...++. +.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhh
Confidence            37999999999986 45555554 66654 8899988766643211                       12334444 34


Q ss_pred             CCCCCEEEEeccCChH
Q 007805          385 FKDVDMVIEAVIESVP  400 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~  400 (589)
                      +++.|+|++|+|.+..
T Consensus        59 ~~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          59 AASCDAVFVHSSTASH   74 (164)
T ss_dssp             HTTCSEEEECSCTTHH
T ss_pred             hhhcccccccccchhc
Confidence            5789999999996553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.0022  Score=56.95  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-CC-
Q 007805          310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-  385 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-  385 (589)
                      ||||||+|.||...+..+... +++|+ ++|+++++.+...+.          .+ +.        ...+..+|++ .+ 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~----------~~-~~--------~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc----------cc-cc--------cceeecCcHHHhhh
Confidence            799999999999999888775 66776 779999876654221          11 00        1123445553 22 


Q ss_pred             -CCCCEEEEeccCChH
Q 007805          386 -KDVDMVIEAVIESVP  400 (589)
Q Consensus       386 -~~aDlVIeavpe~~~  400 (589)
                       .+.|+|+.|+|.+..
T Consensus        64 ~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             CTTCCEEEECCCGGGH
T ss_pred             ccccceeeecccchhh
Confidence             568999999986554

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.60  E-value=0.01  Score=55.22  Aligned_cols=139  Identities=16%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      --+++....+.+..+.+.+..+. +-.|.+.-     |.|+.+.+-..     ....+...... + ..+ .-..|+|++
T Consensus       102 GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~~-----~l~~~~~~~~~-~-~~l-s~~vP~i~v  167 (253)
T d1on3a1         102 GGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGID-----SLSGYGKMFFA-N-VKL-SGVVPQIAI  167 (253)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH-----HHHHHHHHHHH-H-HHH-TTTSCEEEE
T ss_pred             cccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCcccccce-----eccccceehHH-H-HHH-hccceEEEE
Confidence            37899999999999999887654 44555532     23444432110     00011111111 1 223 335899999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-------HHc
Q 007805          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL  177 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-------~~~  177 (589)
                      +.|+|+||+.....+||++|+.+++.+++.-               |+.+       -..+|+.++.+|.       ..-
T Consensus       168 v~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG---------------P~vV-------e~~~ge~~~~eelGga~~h~~~s  225 (253)
T d1on3a1         168 IAGPCAGGASYSPALTDFIIMTKKAHMFITG---------------PQVI-------KSVTGEDVTADELGGAEAHMAIS  225 (253)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESSC---------------HHHH-------HHHHCCCCCHHHHHSHHHHHHTT
T ss_pred             EecCcccceeeccchhhheeccccceEEecC---------------cchh-------hhhhCCcCChHhccCHHHhhhcc
Confidence            9999999999999999999999887766421               1111       0134677766533       356


Q ss_pred             CCcceecCchHHHHHHHHHHHHHHh
Q 007805          178 GLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       178 Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      |.||.+++.++   .+.+.++++.+
T Consensus       226 G~iD~v~~~e~---~a~~~~r~lls  247 (253)
T d1on3a1         226 GNIHFVAEDDD---AAELIAKKLLS  247 (253)
T ss_dssp             CCCSEEESSHH---HHHHHHHHHHH
T ss_pred             ccceEEECCHH---HHHHHHHHHHH
Confidence            99999998764   35556655544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0015  Score=57.43  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|+|+|-.+.+++..|.+.|.+|++++|++++.+..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l   57 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL   57 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHH
Confidence            689999999999999999999999999999999887764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.012  Score=51.72  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            579999999999999988888897 7999999999988763

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.55  E-value=0.00079  Score=55.85  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      .++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            478999999999999999999999999999987643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.54  E-value=0.0045  Score=55.67  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|+|.|+|.+|..+|..|.+.|..|+++|.+++.++..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            689999999999999999999999999999999887664

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0024  Score=49.42  Aligned_cols=69  Identities=22%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      +||-|||.|-+|. ++|..|.+.|++|.++|+++...-+.          +.+.| +          .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----------L~~~G-i----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAY----------LRKLG-I----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------HHHTT-C----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----------HHHCC-C----------eEEeeecccccCC
Confidence            4799999998886 78999999999999999986432221          22333 1          1333344566889


Q ss_pred             CCEEEE--eccCC
Q 007805          388 VDMVIE--AVIES  398 (589)
Q Consensus       388 aDlVIe--avpe~  398 (589)
                      +|+||.  ++|++
T Consensus        61 ~d~vV~SsAI~~~   73 (89)
T d1j6ua1          61 PDLVIKTPAVRDD   73 (89)
T ss_dssp             CSEEEECTTCCTT
T ss_pred             CCEEEEecCcCCC
Confidence            999996  45544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.0011  Score=58.44  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      ++|.|+|+|-++.+++..|.+.+-+|++++|++++++...+.+.       ..+.           ......+...+.++
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~~-----------~~~~~~~~~~~~~~   80 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYGN-----------IQAVSMDSIPLQTY   80 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGSC-----------EEEEEGGGCCCSCC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hccc-----------cchhhhcccccccc
Confidence            67999999999999999999988899999999988776543221       1110           01111122346789


Q ss_pred             CEEEEeccCC
Q 007805          389 DMVIEAVIES  398 (589)
Q Consensus       389 DlVIeavpe~  398 (589)
                      |+||-|+|-.
T Consensus        81 diiIN~tp~g   90 (171)
T d1p77a1          81 DLVINATSAG   90 (171)
T ss_dssp             SEEEECCCC-
T ss_pred             ceeeeccccc
Confidence            9999999843

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.035  Score=51.62  Aligned_cols=139  Identities=15%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-+++....+.+..+.+.+.++. +-.|.+.-     |.|+.+.+-...     ...+.... ...  .......|+|++
T Consensus       102 gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~~-----~~~~~~~~-~~~--~~~~~~vP~I~~  167 (258)
T d2a7sa1         102 GGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVS-----LGLYSRIF-RNN--ILASGVIPQISL  167 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTHH-----HHHHHHHH-HHH--HHHTTTSCEEEE
T ss_pred             CCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccccc-----ccchhhHH-HHH--HHHcCCCCEEEE
Confidence            47899999999999999887654 45566643     234444321000     00011111 112  234567999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeC-CceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-------HH
Q 007805          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-------~~  176 (589)
                      +.|+|.||+......||++|+.+ .+.+++.                    |+....  ..+|+.++.++.       .+
T Consensus       168 v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~--~~~ge~~~~eeLGga~~h~~~  225 (258)
T d2a7sa1         168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK--TVTGEEVTMEELGGAHTHMAK  225 (258)
T ss_dssp             ECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH--HhcCCccChhhccCHhHhhhh
Confidence            99999999999999999998864 4444321                    111111  247888887754       45


Q ss_pred             cCCcceecCchHHHHHHHHHHHHHHh
Q 007805          177 LGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      .|.+|.+++++   +++.+.++++.+
T Consensus       226 sG~~D~v~~de---~~a~~~~r~~Ls  248 (258)
T d2a7sa1         226 SGTAHYAASGE---QDAFDYVRELLS  248 (258)
T ss_dssp             SCCCSEEESSH---HHHHHHHHHHHH
T ss_pred             ccccceEeCCH---HHHHHHHHHHHH
Confidence            79999999754   334444444443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00062  Score=53.47  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +||+|+|+|..|.++|..|.+.|.+|++||.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5799999999999999999999999999998643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.42  E-value=0.00092  Score=62.21  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      +.+||.|||+|.+|.+.|..|+++|++|+++|++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999999999999999999999999986

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0059  Score=57.35  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=87.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      .-+++....+.+..+.+.+.++. +-.|.++-     |.|+.+.+-..     ....+.... ..+ ..+.....|+|++
T Consensus       109 gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~-----sl~~~~~~~-~~~-~~~~~~~vP~I~v  175 (263)
T d2f9yb1         109 GGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALM-----SLMQMAKTS-AAL-AKMQERGLPYISV  175 (263)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHH-----HHHHHHHHH-HHH-HHHHHTTCCEEEE
T ss_pred             ccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccc-----hhhcchhHH-HHH-HHHHhCCCceEEE
Confidence            47899999999999999887553 44566653     33444432110     001111111 112 3356788999999


Q ss_pred             eCCcccchhh-HHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC-----CHHHHHHcC
Q 007805          105 VEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI-----TSEEGWKLG  178 (589)
Q Consensus       105 v~G~a~GgG~-~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~-----~a~~A~~~G  178 (589)
                      +.|.|.||+. .+++++|++++.+.+.+++.-.               +.+      + ..+|+.+     +++-..+-|
T Consensus       176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP---------------~vv------e-~~~ge~~~e~~g~a~~~~~~G  233 (263)
T d2f9yb1         176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP---------------RVI------E-QTVREKLPPGFQRSEFLIEKG  233 (263)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH---------------HHH------H-HHHTSCCCTTTTBHHHHGGGT
T ss_pred             ecCCcchHHHhhhhhcCceEeeecceeeeccCH---------------HHH------h-hhcCCcCChhhccHHHHHhCC
Confidence            9999999986 4788888888888877664211               111      1 1334444     344445689


Q ss_pred             CcceecCchHHHHHHHHHHHHHHh
Q 007805          179 LIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       179 lv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      +||.++++++..++..++.+-|..
T Consensus       234 ~iD~vv~~ee~~~~l~~~l~~L~~  257 (263)
T d2f9yb1         234 AIDMIVRRPEMRLKLASILAKLMN  257 (263)
T ss_dssp             CCSEECCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEECCHHHHHHHHHHHHHHhh
Confidence            999999877765555454444443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0016  Score=55.64  Aligned_cols=99  Identities=15%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhC-CC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      |+||||||+ |..|.-+...|..+ .+   +++.+..+...-..            +..+.        .........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~~--------~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFGG--------TTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGGT--------CCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------ccccC--------Cceeeecccch
Confidence            579999998 99999999877665 33   56666554321100            00000        00001111222


Q ss_pred             cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      +.++++|+||.|+|  .+..+++..++.+ ...++++++++|....+
T Consensus        61 ~~~~~~DivF~a~~--~~~s~~~~~~~~~-~g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          61 EALKALDIIVTCQG--GDYTNEIYPKLRE-SGWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHTCSEEEECSC--HHHHHHHHHHHHH-TTCCCEEEECSSTTTTC
T ss_pred             hhhhcCcEEEEecC--chHHHHhhHHHHh-cCCCeecccCCcccccC
Confidence            45789999999998  4444455555543 34456788999876543

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.053  Score=50.11  Aligned_cols=148  Identities=12%  Similarity=0.119  Sum_probs=90.5

Q ss_pred             EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805           16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (589)
Q Consensus        16 ~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (589)
                      +.|.-+++.  .-+++....+.+..+.+.+.+.. +-.|.+..     |.|+.+.+-...     ...+.+.. ... . 
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~~~-~~~-~-  153 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVDA-----LAGYGEIF-LRN-T-  153 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH-H-
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCccccccccc-----cccchHHH-HHH-H-
Confidence            334444553  37889999999999998877553 34555543     234444331110     00111111 112 2 


Q ss_pred             HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (589)
Q Consensus        94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~  172 (589)
                      ...-..|+|+++.|+|.||+......||++|+.+. +.+.       +-   |     |+.      .+ ..+|+.++.+
T Consensus       154 ~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~-------~a---G-----p~v------v~-~~~ge~~~~e  211 (251)
T d1vrga1         154 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMF-------IT---G-----PNV------IK-AVTGEEISQE  211 (251)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB-------SS---C-----HHH------HH-HHHCCCCCHH
T ss_pred             HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEE-------ec---C-----chh------hh-hhcCCcCChH
Confidence            33567999999999999999999999999998754 3322       21   1     121      11 2577889988


Q ss_pred             HH-------HHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          173 EG-------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       173 ~A-------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      +.       ..-|.+|.+++++   +.+.+.++++.+
T Consensus       212 elGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs  245 (251)
T d1vrga1         212 DLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLS  245 (251)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHT
T ss_pred             HccchhhhhhccccceEEECCH---HHHHHHHHHHHH
Confidence            75       4569999999765   334455555544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.34  E-value=0.00089  Score=64.71  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             HHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          271 KELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       271 ~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +.|...++..+.++-....-++.            ..-+||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~------------~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           5 AECFQENDYEEFLEIARNGLKAT------------SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGGGCCTTHHHHHHHHHHCSCCC------------SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             HhhcCCccHHHHHHHHhcCCCCC------------CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45677777555444333222111            123689999999999999999999999999999764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.015  Score=50.50  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|. +|+++|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            479999999999999999888998 7999999999988763

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.30  E-value=0.0014  Score=57.49  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      -||+|||+|.||...+..+.+. +++++ ++|++++....                           .......+. +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4799999999999999988775 56655 77887653211                           112223333 456


Q ss_pred             CCCCEEEEeccCCh
Q 007805          386 KDVDMVIEAVIESV  399 (589)
Q Consensus       386 ~~aDlVIeavpe~~  399 (589)
                      .+.|+|++|+|...
T Consensus        57 ~~~D~Vvi~tp~~~   70 (170)
T d1f06a1          57 DDVDVLFLCMGSAT   70 (170)
T ss_dssp             TTCSEEEECSCTTT
T ss_pred             cccceEEEeCCCcc
Confidence            78999999998665

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.26  E-value=0.003  Score=55.78  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (589)
                      ++|.|||+|-++.+++..|.+.| +|++++|++++.+...+.+...+....             ...+.. .++ ....+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~   83 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------------GEEVKF-SGLDVDLDG   83 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------------HHHEEE-ECTTCCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------------hhhhhh-hhhhhccch
Confidence            67999999999999999998777 999999999998876554433221000             001111 222 44677


Q ss_pred             CCEEEEecc
Q 007805          388 VDMVIEAVI  396 (589)
Q Consensus       388 aDlVIeavp  396 (589)
                      +|+||-|+|
T Consensus        84 ~dliIn~tp   92 (177)
T d1nvta1          84 VDIIINATP   92 (177)
T ss_dssp             CCEEEECSC
T ss_pred             hhhhccCCc
Confidence            889998887

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.01  Score=50.72  Aligned_cols=102  Identities=7%  Similarity=-0.020  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      .+|-|+|.|.+|..++..|...|++|+++|.+++......+..... .-.+-.|.. +++...           ...+.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d~~~L~-----------~a~i~~   71 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSNDSSVLK-----------KAGIDR   71 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTSHHHHH-----------HHTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcchHHHH-----------Hhcccc
Confidence            4699999999999999999999999999999988654432211100 000001111 111000           033688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||.||.+.+++..- ..+...+....+.-.+++-..
T Consensus        72 a~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          72 CRAILALSDNDADN-AFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             CSEEEECSSCHHHH-HHHHHHHHHHTSSSCEEEECS
T ss_pred             CCEEEEccccHHHH-HHHHHHHHHhCCCCceEEEEc
Confidence            99999999865432 222223334444444665433

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.24  E-value=0.038  Score=51.51  Aligned_cols=163  Identities=12%  Similarity=0.100  Sum_probs=102.2

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      +.-|+|..  .+++++-.+...+.++.++.. ++=.|.|.-. +.|..|.+-..          ....+...+++ .++.
T Consensus        71 vian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a  137 (264)
T d1vrga2          71 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKLL-YAYS  137 (264)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHHH-HHHh
Confidence            44466654  689999999999999998865 4556666433 34666654332          11233444666 7799


Q ss_pred             hCCCcEEEEeCCcccchhhHHh----hhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-c---CHHHH--HH--HH
Q 007805           96 DCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---GLSKA--IE--MM  163 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~la----la~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~---G~~~a--~~--l~  163 (589)
                      ++..|.|+.|=|.++|+|..-.    +.+|++++.++++++.       +.+-++...+-+. +   .....  .+  -.
T Consensus       138 ~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~~~~~~~  210 (264)
T d1vrga2         138 EATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRRKLIEE  210 (264)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHHHHHHHH
Confidence            9999999999999999886322    2588888877777663       3333333322221 1   00000  00  01


Q ss_pred             HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHH
Q 007805          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (589)
Q Consensus       164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (589)
                      +.-+.-++-.+.+.|++|.|+++.+.........+.+
T Consensus       211 ~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l  247 (264)
T d1vrga2         211 YKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVC  247 (264)
T ss_dssp             HHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence            1112246888899999999999988776655544433

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.22  E-value=0.06  Score=50.02  Aligned_cols=139  Identities=13%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (589)
Q Consensus        25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa  104 (589)
                      --+++....+.+..+.+.+..+. +-.|.|.-.|     |+.+.+-...     ...+.. .....  .......|+|++
T Consensus       101 gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg-----Garm~e~~~~-----~~~~~~-~~~~~--~~~s~~vP~I~v  166 (258)
T d1xnya1         101 GGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG-----GARIQEGVAS-----LGAYGE-IFRRN--THASGVIPQISL  166 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-----SBCGGGTHHH-----HHHHHH-HHHHH--HHTTTTSCEEEE
T ss_pred             cCccchhhHHHHHHHHHHHHHcC-CceEEEecCC-----CcccCccccc-----ccchhH-HHHHH--HHHcCCCCEEEE
Confidence            47899999999999999887653 4567676433     3444321110     001111 11111  123456999999


Q ss_pred             eCCcccchhhHHhhhcCEEEEeC-CceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-------HH
Q 007805          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (589)
Q Consensus       105 v~G~a~GgG~~lala~D~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-------~~  176 (589)
                      +.|.|.||+......||++|+.+ .+.+++.          |     |+.+       -..+|+.++.+|+       ..
T Consensus       167 v~G~~~gG~a~~~~~~~~vim~~~~a~i~~a----------G-----P~vv-------~~~~ge~i~~eelgga~~h~~~  224 (258)
T d1xnya1         167 VVGPCAGGAVYSPAITDFTVMVDQTSHMFIT----------G-----PDVI-------KTVTGEDVGFEELGGARTHNST  224 (258)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEETTTCEEESS----------C-----HHHH-------HHHHCCCCCHHHHHBHHHHHHT
T ss_pred             EcCCcChhHHHHHHhccchhhcccceEEEec----------C-----HHHH-------HHHhcCccChHHhccHHHHHhc
Confidence            99999999999999999988875 5555431          1     1111       1357888888875       45


Q ss_pred             cCCcceecCchHHHHHHHHHHHHHHh
Q 007805          177 LGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      -|++|.+++++   +.+.+.++++.+
T Consensus       225 sG~~d~v~~de---~ea~~~~r~~Ls  247 (258)
T d1xnya1         225 SGVAHHMAGDE---KDAVEYVKQLLS  247 (258)
T ss_dssp             SSCCSEEESSH---HHHHHHHHHHHH
T ss_pred             CCeeEEEeCCH---HHHHHHHHHHHH
Confidence            69999999654   334444444433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.22  E-value=0.0026  Score=56.92  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~  352 (589)
                      ++|.|.| .|-+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            6788888 5999999999999999999999999999888765544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.07  E-value=0.021  Score=52.04  Aligned_cols=73  Identities=15%  Similarity=0.095  Sum_probs=47.0

Q ss_pred             eEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       310 kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ||||||+|.||.. +...+... +++|+ ++|+++++++...+..          | +..       ..+...+|+ +.+
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell   96 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA   96 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence            7999999999975 55555544 66766 8899999887653311          1 110       112334555 334


Q ss_pred             --CCCCEEEEeccCChH
Q 007805          386 --KDVDMVIEAVIESVP  400 (589)
Q Consensus       386 --~~aDlVIeavpe~~~  400 (589)
                        .+.|+|++|+|.+..
T Consensus        97 ~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          97 KDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GCTTCCEEEECSCGGGH
T ss_pred             ccccceeeeeccchhhh
Confidence              368999999985543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.016  Score=50.95  Aligned_cols=77  Identities=10%  Similarity=0.001  Sum_probs=48.7

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHhCC--CeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          309 RKVAVIGGGLMGSG-IATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~-iA~~l~~~G--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      -||||||+|.||.. ....+.+.+  ++|+ ++|+++++.+...+.                      .+.....+++ +
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence            37999999999987 466666543  4655 789999887654221                      1222344555 3


Q ss_pred             CC--CCCCEEEEeccCChHHHHHHHHHH
Q 007805          384 EF--KDVDMVIEAVIESVPLKQKIFSEL  409 (589)
Q Consensus       384 ~~--~~aDlVIeavpe~~~~k~~v~~~l  409 (589)
                      .+  .+.|+|++|+|.+..  .++...+
T Consensus        62 ll~~~~id~v~I~tp~~~h--~~~~~~a   87 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN--LPFIEKA   87 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH--HHHHHHH
T ss_pred             cccccccceeecccccccc--ccccccc
Confidence            33  468999999985443  3444443

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.98  E-value=0.0034  Score=54.16  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC----
Q 007805          309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----  381 (589)
Q Consensus       309 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----  381 (589)
                      -||||||+|.+|+. +...+.+. ..+++ +.+++++.......         .+.|             +....+    
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~-------------i~~~~~~~d~   62 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMG-------------VTTTYAGVEG   62 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTT-------------CCEESSHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcC-------------Ccccccceee
Confidence            47999999999986 45555554 34655 45887653221100         1111             111111    


Q ss_pred             c---cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          382 Y---SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       382 ~---~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      +   ....+.|+|+.|+|......+...   ...++.+++++++|+.
T Consensus        63 l~~~~~~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          63 LIKLPEFADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHSGGGGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             eeecccccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            1   124678999999985555444432   2335778889999984

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.014  Score=46.88  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ..||+|||+|..|.-+|....+-|++|+++|.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35899999999999999999999999999999865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.95  E-value=0.0031  Score=61.50  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (589)
                      ++++|||+|.++..-+..+.. .+. +|.+||+++++.++..+++.       +...          -.+...++. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g----------~~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSG----------LTIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTT----------CEEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccC----------CCceecCCHHHHH
Confidence            679999999999988877654 454 89999999998877544321       1100          124456666 778


Q ss_pred             CCCCEEEEeccCC---hHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIES---VPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~---~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+|+.|++.+   +-+.       .+.++|++.|....+
T Consensus       192 ~~ADIi~t~Tas~s~~Pv~~-------~~~l~pG~hI~aiGs  226 (340)
T d1x7da_         192 KGVDIITTVTADKAYATIIT-------PDMLEPGMHLNAVGG  226 (340)
T ss_dssp             TTCSEEEECCCCSSEEEEEC-------GGGCCTTCEEEECSC
T ss_pred             hcCCceeeccccCCCCcccc-------hhhcCCCCEEeeccc
Confidence            9999999888532   1111       135778877765544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.94  E-value=0.0018  Score=60.51  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ..+||+|||+|.-|.+.|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457899999999999999999999999999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.92  E-value=0.0023  Score=56.19  Aligned_cols=110  Identities=15%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH------Hh-hcc-cc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN------AL-KML-KG-V  379 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~-~~i-~~-~  379 (589)
                      .+|.|||+|..|..=+.....-|..|+++|++++++++..+.    ..+++.-...+......      .+ ... .. .
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l----~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL----GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT----TCEECCC-----------------------CCHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh----hcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            589999999999998888888899999999999988775331    11111100000000000      00 000 00 0


Q ss_pred             CCc-cCCCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          380 LDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       380 ~~~-~~~~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ..+ +.+++||+||-++  |....= +-+-++..+.++++.+|++.+
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP-~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAP-VLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCC-CCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecCCcccc-eeehHHHHHhcCCCcEEEEEe
Confidence            001 4478999999876  332210 012245566789999998754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0014  Score=58.35  Aligned_cols=41  Identities=15%  Similarity=0.340  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ++|.|||+|-+|.+++..|.+.|. ++++++|++++.+++..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            689999999999999999999987 79999999988877543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.86  E-value=0.0049  Score=59.80  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 007805          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (589)
                      ++++|||+|.++..-+..+.. ... +|.+|++++++.+...++.+       ..+             +... +..+++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~-------------~~~~~~~~~a~  185 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRG-------------ISASVQPAEEA  185 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTT-------------CCEEECCHHHH
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcC-------------Cccccchhhhh
Confidence            579999999999999888765 333 89999999998877544322       111             1222 233678


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                      ++||+|+.|++....+..      .+.+++++.|....|
T Consensus       186 ~~aDiV~taT~s~~P~~~------~~~l~~G~hv~~iGs  218 (320)
T d1omoa_         186 SRCDVLVTTTPSRKPVVK------AEWVEEGTHINAIGA  218 (320)
T ss_dssp             TSSSEEEECCCCSSCCBC------GGGCCTTCEEEECSC
T ss_pred             ccccEEEEeccCcccccc------hhhcCCCCeEeecCC
Confidence            899999988875443311      134667776655443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.86  E-value=0.0016  Score=53.27  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            78999999999999999999999999999987754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0026  Score=56.29  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      .-+||+|||+|.-|.+-|..++++||+|+++|.+++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            358999999999999999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0016  Score=48.95  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |++|+|||.|..|.-++.....-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            58999999999999999999999999999998754

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.80  E-value=0.0047  Score=54.41  Aligned_cols=84  Identities=19%  Similarity=0.145  Sum_probs=47.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH-hhcccccCCc-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~  383 (589)
                      |-||||.|.|.||+.+++.+..+ +++|+.+ |+++........      ......+ ...+..... -..+....+. +
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~i~v~g~~~~   73 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH------RRGIRIY-VPQQSIKKFEESGIPVAGTVED   73 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH------HTTCCEE-CCGGGHHHHHTTTCCCCCCHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc------ccCccee-ccCccceeccccceecCCchhh
Confidence            45899999999999999999976 4676654 666554322211      0000001 111111111 1223333333 4


Q ss_pred             CCCCCCEEEEeccCC
Q 007805          384 EFKDVDMVIEAVIES  398 (589)
Q Consensus       384 ~~~~aDlVIeavpe~  398 (589)
                      ...++|+||||.|--
T Consensus        74 ~~~~vDiViecTG~f   88 (178)
T d1b7go1          74 LIKTSDIVVDTTPNG   88 (178)
T ss_dssp             HHHHCSEEEECCSTT
T ss_pred             hhhcCCEEEECCCCc
Confidence            456899999999943

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0013  Score=54.39  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=32.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +++.|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            78999999999999999999999999999987643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.77  E-value=0.0015  Score=53.49  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +||.|||+|.+|.-+|..|+..|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            7899999999999999999999999999998654

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.71  E-value=0.072  Score=49.74  Aligned_cols=160  Identities=16%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.-|+|..  ..++.+-.+...+.++.++.. ++-.|.|.-. +.|..|-+-...          ...+...+++ .++.
T Consensus        74 vian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~~----------g~~~~ga~~~-~a~a  140 (271)
T d2a7sa2          74 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYG  140 (271)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHH----------CHHHHHHHHH-HHHH
T ss_pred             EEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHHh----------hHHHHHHHHH-HHHH
Confidence            33456643  689999999999999999765 4667777533 346666543321          1223344566 7799


Q ss_pred             hCCCcEEEEeCCcccchhhHHh----hhcCEEEEeCCceEeccccccCCCCChhhhhhHhh-hcCHH----------H-H
Q 007805           96 DCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVGLS----------K-A  159 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~la----la~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~-~~G~~----------~-a  159 (589)
                      .+..|.|+.+=|.++|+|....    +.+|+++|.++++++.       ++.-++...+-+ .+...          + .
T Consensus       141 ~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~~~~~~~~~  213 (271)
T d2a7sa2         141 EATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLRLR  213 (271)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSCCTTSSTTH
T ss_pred             hCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhcccchHHHHHH
Confidence            9999999999999999875432    3478888887777664       332333222222 11110          0 1


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHH
Q 007805          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA  197 (589)
Q Consensus       160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a  197 (589)
                      .......+.-++..+.+.|++|.|+++.+..+......
T Consensus       214 ~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L  251 (271)
T d2a7sa2         214 LQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTAL  251 (271)
T ss_dssp             HHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHH
Confidence            11112233457778889999999999988766544433

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.68  E-value=0.027  Score=52.34  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |||++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            578766 65 56999999999999999999999999888765543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0015  Score=53.44  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +||.|||+|..|.-+|..|++.|.+|+++++.+.-
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999997643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.52  E-value=0.063  Score=46.02  Aligned_cols=39  Identities=18%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+|.+|...++.+...|.+|++.|+++++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence            579999999999999988888999999999999998775

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.43  E-value=0.0035  Score=55.64  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~  342 (589)
                      +||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            789999999999999999999999 5999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.40  E-value=0.0032  Score=59.22  Aligned_cols=31  Identities=39%  Similarity=0.496  Sum_probs=29.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.36  E-value=0.0053  Score=53.67  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=27.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCC-CeEE-EEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~  342 (589)
                      |.+|||-|.|.||+.+.+.+..++ .+|+ +-|+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            679999999999999999888775 5665 4466654

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.33  E-value=0.085  Score=48.97  Aligned_cols=163  Identities=15%  Similarity=0.190  Sum_probs=101.4

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (589)
Q Consensus        18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (589)
                      |.-|+|.  ..+++++-.+...+.++.++.. ++-.|.|.-. +.|-.|.+-+.          ....+...+++ .++.
T Consensus        69 via~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a  135 (263)
T d1xnya2          69 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQEH----------DGIIRRGAKLI-FAYA  135 (263)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHHH----------HhHHHHHHHHH-HHHH
Confidence            3345664  3699999999999999999865 4556666433 33666654332          11233344566 7799


Q ss_pred             hCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC----------HHHHHH
Q 007805           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG----------LSKAIE  161 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G----------~~~a~~  161 (589)
                      ++..|.|+.|-|.++|||.....    ..|+++|.+++.++.       +++-++...+-+.-.          .....+
T Consensus       136 ~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~~~  208 (263)
T d1xnya2         136 EATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQ  208 (263)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHHHH
T ss_pred             ccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            99999999999999998765432    368888887777663       333333333322110          000001


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHH
Q 007805          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (589)
Q Consensus       162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (589)
                      .. .-+..++..+...|++|.|+++.+.........+.+.
T Consensus       209 ~~-~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         209 EY-EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  247 (263)
T ss_dssp             HH-HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HH-HHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHh
Confidence            00 1112356778888999999999988765555444443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.28  E-value=0.047  Score=50.71  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=35.9

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .||++| |+ +-||.++|..|++.|++|++.|++++.+++..+++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367766 54 67999999999999999999999999888765544

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.26  E-value=0.0051  Score=50.54  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~  345 (589)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++++.-+.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~   67 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS   67 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence            6899999999999999999999999999999876543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0033  Score=52.05  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ++|.|||+|.+|.-+|..|+..|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7899999999999999999999999999999754

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.21  E-value=0.096  Score=48.60  Aligned_cols=164  Identities=15%  Similarity=0.099  Sum_probs=101.7

Q ss_pred             EeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHh
Q 007805           19 TLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED   96 (589)
Q Consensus        19 ~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   96 (589)
                      .=|+|.  ..+++++-.+...+.++..+.. ++-.|.|.=. +.|..|-+-+.          ....+...+++ .++.+
T Consensus        72 ian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a~  138 (264)
T d1on3a2          72 VANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSE  138 (264)
T ss_dssp             EEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHH
T ss_pred             EeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHHc
Confidence            345664  3799999999999999998864 4666666433 44666665332          11233444666 77999


Q ss_pred             CCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-c---CHH---HHH-HHHH
Q 007805           97 CKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---GLS---KAI-EMML  164 (589)
Q Consensus        97 ~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~---G~~---~a~-~l~l  164 (589)
                      +..|.|+.|=|.++|+|..-..    ..|+++|.+++.++       .++.-|+...+-+. +   ...   +.. ..-.
T Consensus       139 ~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~  211 (264)
T d1on3a2         139 ATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEY  211 (264)
T ss_dssp             CCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Confidence            9999999999999998864332    45777766666555       44444444333221 1   000   000 0011


Q ss_pred             cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (589)
Q Consensus       165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (589)
                      ..+.-++-.+.+.|+||+|+++.+.........+.+..
T Consensus       212 ~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         212 QNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  249 (264)
T ss_dssp             HHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence            11223577888899999999998876655555444433

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.15  E-value=0.0033  Score=51.51  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ++|.|||+|.+|.-+|..|++.|.+|+++.+++.-
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            78999999999999999999999999999987643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.094  Score=48.19  Aligned_cols=42  Identities=19%  Similarity=0.082  Sum_probs=34.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .|-|.|+ +-||.++|..|+++|++|+++|++++++++..+++
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445576 45999999999999999999999999988765543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.01  E-value=0.073  Score=50.30  Aligned_cols=42  Identities=29%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~II-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |++|| | +|-+|.++|..|++.|++|++.|++.+++++..+++
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            55555 5 688999999999999999999999999888765544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.94  E-value=0.075  Score=49.08  Aligned_cols=42  Identities=19%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      .||++| |+ +-||.++|..|++.|++|+++|++++.+++..+.
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~   53 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE   53 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            466655 75 6799999999999999999999999988876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.92  E-value=0.003  Score=51.45  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +++.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            78999999999999999999999999999987653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.86  E-value=0.099  Score=48.44  Aligned_cols=42  Identities=19%  Similarity=0.083  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      |+|-|.|+ +-||.++|..|++.|++|++.+++++.++++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56778885 7799999999999999999999999988876543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.016  Score=50.18  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+ ..|.++|..|++.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            689999975 5799999999999999999997543322                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                      ||+||.|+...--++       .+.+++++++++...+
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence            999999996322222       3468899999877554

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.04  Score=45.78  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             eEEEEc-CCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805          310 KVAVIG-GGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (589)
Q Consensus       310 kI~IIG-~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (589)
                      ||+|+| .|.||..++..+.+. ++++. .+|+.... ..                                    ....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence            799999 599999999887664 66654 45543110 00                                    0124


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh
Q 007805          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (589)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (589)
                      ++|+||+-..  ++...+.++.   .++.+..++..|++++.+++.
T Consensus        44 ~~DvvIDFS~--p~~~~~~~~~---~~~~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTH--PDVVMGNLEF---LIDNGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCC--TTTHHHHHHH---HHHTTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEccc--HHHHHHHHHH---HHhcCCCEEEeccccchhHHH
Confidence            6899999774  3323333333   334566777888888865543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.80  E-value=0.0073  Score=58.40  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      .+||+|||+|.-|.+.|..|+++|++|++++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            3789999999999999999999999999999874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.80  E-value=0.0052  Score=58.27  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            6999999999999999999999999999998753

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.79  E-value=0.017  Score=48.95  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC-CC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      +||||||+ |..|.-+.+.|.++ .|   ++..+.-+... .+           ....+.        ....+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk-----------~~~~~~--------~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VP-----------APNFGK--------DAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SB-----------CCCSSS--------CCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-cc-----------ccccCC--------cceeeecccchh
Confidence            47999997 99999999877754 34   44444433110 00           000000        000111112334


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      .++++|+||.|+|  -.+.+++..++.+. ..+++++++++...++
T Consensus        61 ~~~~~DvvF~alp--~~~s~~~~~~l~~~-g~~~~VIDlSsdfR~~  103 (147)
T d1mb4a1          61 SLKQLDAVITCQG--GSYTEKVYPALRQA-GWKGYWIDAASTLRMD  103 (147)
T ss_dssp             HHTTCSEEEECSC--HHHHHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred             hhccccEEEEecC--chHHHHHhHHHHHc-CCceEEEeCCcccccc
Confidence            5789999999999  44455666665543 3446788999876643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.064  Score=50.94  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~  352 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|+++++++.+.+++.
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~   57 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ   57 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            34445565 669999999999999999999999999888655443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.75  E-value=0.0043  Score=51.15  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      +++.|||+|.+|.-+|..+.+.|.+|+++.+++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            789999999999999999999999999999877543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.73  E-value=0.007  Score=56.98  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |||+|||+|.=|.+-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.011  Score=51.09  Aligned_cols=104  Identities=16%  Similarity=0.079  Sum_probs=60.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      ..||+|+|+ |.||+.++..+.+. +++++ .+|+.....-.            ...|.+...    ....+..++++ +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~~----~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAGA----GKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSSS----SCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhcc----ccCCceeeccHHH
Confidence            457999995 99999999988775 66654 55654221000            000100000    00123345555 4


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (589)
                      ....+|+||+-..  ++...+.++   ...+.+..+++.|+++.-+++.
T Consensus        68 ~~~~~DViIDFs~--p~~~~~~~~---~a~~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEGTLNHLA---FCRQHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHHHHHHHH---HHHHTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHHHHHHHH---HHHhccceeEEecCCCcHHHHH
Confidence            5688999999775  443334333   3344566777888888766543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.68  E-value=0.0095  Score=48.88  Aligned_cols=32  Identities=16%  Similarity=0.038  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      ++|+|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999999876

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.072  Score=49.72  Aligned_cols=41  Identities=27%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      +++-|.|+ +-||.++|..|++.|++|++.+|+++.+++..+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666786 559999999999999999999999999887644

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.64  E-value=0.0067  Score=49.56  Aligned_cols=36  Identities=14%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      ++|+|||+|.+|.-+|..|+..|.+|+++++.+.-+
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            789999999999999999999999999999876543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.62  E-value=0.044  Score=53.01  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      -++|.|.|+ |.+|+.++..|+++|++|++..|+.++.+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            478999996 9999999999999999999999998765543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.60  E-value=0.0066  Score=57.08  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      ++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            469999999999999999999999999999863

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.60  E-value=0.027  Score=48.99  Aligned_cols=85  Identities=14%  Similarity=0.156  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH-hhcccccCCc-cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~  384 (589)
                      .||||.|.|.||+.+...+.... .+|+ +.|+++........+      ................ ...+....+. +.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE------LGIPVYAASEEFIPRFEKEGFEVAGTLNDL   76 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH------TTCCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhh------cCceeecccccceeeecccCccccchhhhh
Confidence            48999999999999999988754 5655 557776543321110      0000000111111111 1122222233 44


Q ss_pred             CCCCCEEEEeccCCh
Q 007805          385 FKDVDMVIEAVIESV  399 (589)
Q Consensus       385 ~~~aDlVIeavpe~~  399 (589)
                      .+++|+||||.+--.
T Consensus        77 ~~~vDvViEcTG~f~   91 (172)
T d2czca2          77 LEKVDIIVDATPGGI   91 (172)
T ss_dssp             HTTCSEEEECCSTTH
T ss_pred             hccCCEEEECCCCCC
Confidence            579999999998433

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.60  E-value=0.047  Score=50.04  Aligned_cols=72  Identities=24%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             cceEEEEcCCCCcHHHHH----HHHh--CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 007805          308 VRKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (589)
                      .-||||||+|.+|+-++.    .+.+  .+++|+ ++|+++++.+...++.          + +         ......+
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~----------~-~---------~~~~~~~   75 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------Q-L---------KHATGFD   75 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------T-C---------TTCEEES
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc----------c-c---------ccceeec
Confidence            357999999998876654    2333  356766 7899998877643211          1 0         1122334


Q ss_pred             Ccc-CC--CCCCEEEEeccCCh
Q 007805          381 DYS-EF--KDVDMVIEAVIESV  399 (589)
Q Consensus       381 ~~~-~~--~~aDlVIeavpe~~  399 (589)
                      +++ .+  .+.|+|+.|+|...
T Consensus        76 ~~~~l~~~~~iD~V~i~tp~~~   97 (237)
T d2nvwa1          76 SLESFAQYKDIDMIVVSVKVPE   97 (237)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHH
T ss_pred             chhhcccccccceeeccCCCcc
Confidence            553 23  56899999998433

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.58  E-value=0.0096  Score=48.83  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ++|.|||+|.+|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5799999999999999999999999999998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.061  Score=46.30  Aligned_cols=39  Identities=21%  Similarity=0.064  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+|.+|...++.+...|.+|++.|.++++.+.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            579999999999988888888899999999999987765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.36  E-value=0.012  Score=49.08  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=33.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            689999999999999999999999999999976644

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.35  E-value=0.11  Score=48.27  Aligned_cols=43  Identities=26%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~II-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .||++| | ++-+|.++|..|++.|++|++.|++++.+++..+++
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            456666 5 578999999999999999999999999988865544

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.31  E-value=0.0096  Score=57.83  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChH
Q 007805          307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE  342 (589)
Q Consensus       307 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~  342 (589)
                      .|+||+|||+|.-|.+.|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5899999999999999999998766  69999998853

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.30  E-value=0.028  Score=46.38  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      ++|+|||+    |.+|..+...|...| ++|+.++.+.+.+                             ..+....+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            78999997    788888888887665 5888887764321                             2244556665


Q ss_pred             CC-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEE
Q 007805          384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  419 (589)
Q Consensus       384 ~~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii  419 (589)
                      .+ ...|+++.++|  .+...++++++.+.=-+..++
T Consensus        60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred             hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence            55 46899999998  666778888876653333344

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.23  E-value=0.076  Score=45.42  Aligned_cols=39  Identities=23%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+|.+|...++.+...|.+|++.+.++++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            579999999999988888888899999999999988775

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.20  E-value=0.024  Score=49.37  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|.. |++.|.++++++.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            5799999999999999988888875 567799999888763

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.015  Score=50.04  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (589)
                      ++|.|||-+ .+|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            789999975 5799999999999999999986543322                                     22567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      ||+||.|+.-.--++       .+.+++++++++..
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG  109 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG  109 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence            999999996222121       24578888888754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.06  E-value=0.1  Score=43.38  Aligned_cols=87  Identities=13%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (589)
Q Consensus       308 ~~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (589)
                      .++|+|||+    +..|..++..|..+||+|+.++...+.+                             .......+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            368999996    5689999999999999988887653221                             2234455664


Q ss_pred             CC-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC
Q 007805          384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (589)
Q Consensus       384 ~~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (589)
                      ++ ...|+|+.++|  .+...++++++... ....++. ...+..
T Consensus        70 dlp~~iD~v~i~vp--~~~~~~~~~e~~~~-g~k~v~~-~~G~~~  110 (139)
T d2d59a1          70 DIPDKIEVVDLFVK--PKLTMEYVEQAIKK-GAKVVWF-QYNTYN  110 (139)
T ss_dssp             GCSSCCSEEEECSC--HHHHHHHHHHHHHH-TCSEEEE-CTTCCC
T ss_pred             ccCccceEEEEEeC--HHHHHHHHHHHHHh-CCCEEEE-eccccC
Confidence            44 46899999998  77778888887765 3445543 343333

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.12  Score=47.88  Aligned_cols=42  Identities=19%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      .+-|.|+ +-+|.++|..|++.|++|++++++++++++..+++
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l   54 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC   54 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445565 78899999999999999999999999888865544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.03  E-value=0.076  Score=46.11  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            579999999999999999998997 6889999999987763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.95  E-value=0.2  Score=46.29  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++.+++..+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS   48 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34556676 5699999999999999999999999988876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.13  Score=47.39  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=34.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+++
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 54 77999999999999999999999999888765543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.91  E-value=0.04  Score=44.55  Aligned_cols=72  Identities=24%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ++|+|||+    |..|..+...|.+.||+|+.++.+.+.+                             ..+....++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999995    6779999999999999988877653321                             12344556654


Q ss_pred             C-CCCCEEEEeccCChHHHHHHHHHHHH
Q 007805          385 F-KDVDMVIEAVIESVPLKQKIFSELEK  411 (589)
Q Consensus       385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~  411 (589)
                      + ...|+++.++|  .+...++++++..
T Consensus        53 lp~~~D~vvi~vp--~~~~~~~l~~~~~   78 (116)
T d1y81a1          53 LPKDVDVIVFVVP--PKVGLQVAKEAVE   78 (116)
T ss_dssp             SCTTCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             ccccceEEEEEeC--HHHHHHHHHHHHh
Confidence            5 45699999998  6666677777554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.86  E-value=0.013  Score=55.83  Aligned_cols=32  Identities=16%  Similarity=0.491  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      +|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999996 799999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.72  E-value=0.0093  Score=49.19  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +++.|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            78999999999999999999999999999987644

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.71  E-value=0.16  Score=46.86  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      .+-|.|+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~   47 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA   47 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4445576 5699999999999999999999999988876543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.70  E-value=0.063  Score=46.62  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            469999999999999988888897 7999999999988763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.68  E-value=0.21  Score=45.84  Aligned_cols=43  Identities=28%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++++++..+++
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            44556676 66999999999999999999999999888765543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.15  Score=46.99  Aligned_cols=40  Identities=33%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       310 kI~-IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |++ |.|+ +-+|.++|..|++.|++|++.|++++++++..+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            444 4475 669999999999999999999999998877644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.58  E-value=0.11  Score=45.08  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~  349 (589)
                      ..|.|+|+|.+|...++.+...|. +|++.|+++++++.+.+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            469999999999999999999985 89999999999998744

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.02  Score=54.55  Aligned_cols=33  Identities=30%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      -.||+|||+|.=|.+-|..|+++|++|++++.+
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            367999999999999999999999999999976

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.52  E-value=0.2  Score=46.26  Aligned_cols=43  Identities=21%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++.+++..+++
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34556676 56999999999999999999999999988765543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.48  E-value=0.016  Score=52.99  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      +|+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            69999999999999999999996 799999864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.44  E-value=0.18  Score=46.41  Aligned_cols=40  Identities=35%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45544 64 679999999999999999999999988776533

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.42  E-value=0.22  Score=46.29  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++.+++..+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI   48 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34555575 6799999999999999999999999988876554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.41  E-value=0.018  Score=54.09  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      |.|||+|..|.+.|..|+++|++|+++|..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            899999999999999999999999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.39  E-value=0.0041  Score=57.00  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEE
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVV  335 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~  335 (589)
                      +||+|||+|.+|.+.|..|+++|++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCce
Confidence            479999999999999999999998654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.32  E-value=0.15  Score=47.06  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45544 65 66999999999999999999999998877653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.017  Score=55.22  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |..|.|||+|.-|.++|..|++.|++|++++.+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4679999999999999999999999999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.025  Score=48.96  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            5799999999999888877778999999999999888763

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.12  E-value=0.82  Score=42.80  Aligned_cols=161  Identities=10%  Similarity=0.098  Sum_probs=96.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (589)
Q Consensus        26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav  105 (589)
                      -+|+++-.+...+.++.++.. .+-.|.|.=. +.|-.|-+-+.          ....+...+++ .++.++..|.|+.|
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E~----------~g~~r~ga~~~-~a~~~~~VP~isvi  163 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT  163 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHHh----------hhHHHHHHHHH-HHHHhhcceeEEEE
Confidence            468899999999999998865 4556666422 33655544321          11233444566 67899999999999


Q ss_pred             CCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhH-hhhcCHH------------HHHHHHH-cCC
Q 007805          106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVGLS------------KAIEMML-LSK  167 (589)
Q Consensus       106 ~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l-~~~~G~~------------~a~~l~l-tg~  167 (589)
                      =|.++|||...+.    ..|++++     +..|-.++|.+++-++...+ .+.+...            +-.+++- .-+
T Consensus       164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~  238 (299)
T d1pixa3         164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT  238 (299)
T ss_dssp             CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999998854332    2343331     23344555666544444333 2222100            0011110 112


Q ss_pred             CCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (589)
Q Consensus       168 ~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (589)
                      ..++..+.+.|+||+|+++.+.......+.+.+.+++
T Consensus       239 ~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~~  275 (299)
T d1pixa3         239 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  275 (299)
T ss_dssp             TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             hcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhCc
Confidence            3578888999999999999888776666665544443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.95  E-value=0.036  Score=50.61  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ..-++|.|||+|.-|...|..+++.|++|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4568999999999999999999999999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.84  E-value=0.036  Score=46.68  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCcc
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS  383 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  383 (589)
                      .||||||+ |..|.-+.+.|.+++|   ++....-+...-+.            +...          ...+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~------------i~~~----------~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR------------MGFA----------ESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE------------EEET----------TEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc------------eeec----------cccchhccchhh
Confidence            57999997 9999999999987665   56655433221000            0000          001111 11225


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (589)
                      ...++|++|.|+|  ...-.++..++   ...+++|+++++....
T Consensus        61 ~~~~~d~vf~a~p--~~~s~~~~~~~---~~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          61 DFSSVGLAFFAAA--AEVSRAHAERA---RAAGCSVIDLSGALEP  100 (144)
T ss_dssp             CGGGCSEEEECSC--HHHHHHHHHHH---HHTTCEEEETTCTTTT
T ss_pred             hhccceEEEecCC--cchhhhhcccc---ccCCceEEeechhhcc
Confidence            5789999999998  44344544443   3467888999987653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.78  E-value=0.12  Score=46.97  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|+|-|.|++|..+|..|.+.|..|+..|.++..++..
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~   78 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA   78 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHH
Confidence            689999999999999999999999999999999887765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.028  Score=50.75  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |.|||+|.-|...|..|+++|++|+++|.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999975

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.55  E-value=0.3  Score=44.58  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      .+-|.|+ +-||.++|..|++.|++|++.|+++++++...
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3445576 66999999999999999999999998877653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.54  E-value=0.26  Score=45.40  Aligned_cols=42  Identities=19%  Similarity=0.128  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.+++++.+++..+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            44556675 6699999999999999999999999988876554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.54  E-value=0.29  Score=44.52  Aligned_cols=41  Identities=20%  Similarity=0.136  Sum_probs=33.5

Q ss_pred             ceEEE-EcC-CCCcHHHHHHHHhCCCe-------EEEEeCChHHHHHHHH
Q 007805          309 RKVAV-IGG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~I-IG~-G~mG~~iA~~l~~~G~~-------V~~~d~~~~~~~~~~~  349 (589)
                      |+|.+ -|+ +-||.++|..|++.|++       |++++++++.+++..+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence            46654 476 56899999999999987       9999999998887644

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.49  E-value=0.062  Score=46.91  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (589)
                      |.||+|||+ |..|.-+.+.|.++ .+++.-. -.+.+..  +-+.+......+  .+...        .......+. .
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~--aGk~~~~~~~~~--~~~~~--------~~~~~~~~~~~   68 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSND--AGKLISDLHPQL--KGIVD--------LPLQPMSDVRD   68 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTT--TTCBHHHHCGGG--TTTCC--------CBEEEESCGGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccc--cccccccccccc--ccccc--------cccccchhhhh
Confidence            679999996 99999999999997 5666543 2221100  000000000000  00000        001112222 3


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      ...++|+||.|+|  .....++...+   ...++.++++++.....
T Consensus        69 ~~~~~dvvf~alp--~~~s~~~~~~~---~~~~~~vIDlSadfRl~  109 (179)
T d2g17a1          69 FSADVDVVFLATA--HEVSHDLAPQF---LQAGCVVFDLSGAFRVN  109 (179)
T ss_dssp             TCTTCCEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred             hhcccceeecccc--chhHHHHhhhh---hhcCceeeccccccccc
Confidence            4578999999998  33344444443   34677888888865543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.48  E-value=0.23  Score=40.41  Aligned_cols=37  Identities=14%  Similarity=-0.029  Sum_probs=31.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |+|-|+|.|.+|..++..|  .|++|+++|.+++..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~   37 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV   37 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence            4688999999999999987  477899999999987664

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.45  E-value=0.031  Score=51.84  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~  342 (589)
                      .+|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            479999999999999999999995 8999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.40  E-value=0.13  Score=43.12  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      ++|.|||+|.+|..-|..|+++|.+|++++.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            7899999999999999999999999999964

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.36  E-value=0.19  Score=46.29  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             ceEEEEcC-CC--CcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~--mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      |+|-|.|+ |.  ||.++|+.|++.|.+|++.+++.+++.+
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH
Confidence            56778885 65  9999999999999999999999876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.31  E-value=0.3  Score=45.38  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34455565 66999999999999999999999999888765543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.49  Score=40.40  Aligned_cols=39  Identities=15%  Similarity=0.024  Sum_probs=33.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+ |.+|....+.....|.+|++.+.++++.+.+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV   69 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccccccccc
Confidence            57999995 9999988888888899999999998887665

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.17  Score=47.16  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHH
Q 007805          309 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~II--G~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      ++|+||  |.+-+|.++|..|++. |..|++.+|++++++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            579888  4577899999999975 899999999999988876544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.26  Score=45.02  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.+++..+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45555 75 679999999999999999999999988776533

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.24  E-value=0.18  Score=46.52  Aligned_cols=42  Identities=14%  Similarity=0.147  Sum_probs=34.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~  351 (589)
                      ++-|.|+ +-+|.++|..|++.|++|++.|++++.+++..+++
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445575 56999999999999999999999998887765543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.16  E-value=0.049  Score=46.25  Aligned_cols=38  Identities=11%  Similarity=0.028  Sum_probs=31.0

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~II--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      +.|.|+  |.|.||..+|..|++.|.+|+++++.+.-+..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            345555  99999999999999999999999987654433

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.12  E-value=0.031  Score=50.75  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~  342 (589)
                      .||+|||+|.-|.+-|..|+++  |++|+++|..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            3899999999999999999765  789999998864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.08  E-value=0.39  Score=44.17  Aligned_cols=41  Identities=34%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKT  350 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~  350 (589)
                      |+++| |+ +-||.++|..|++.|++|++.+++ ++.+++..+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            55555 54 669999999999999999999997 4556655443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.07  E-value=0.63  Score=39.43  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+ |.+|...++.+...|. .|++.++++++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            57999995 9999988888887784 9999999999887763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=92.07  E-value=0.063  Score=46.88  Aligned_cols=40  Identities=18%  Similarity=-0.056  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      .+|-.||+|.  +..+..|+++|++|+++|++++.++.+.++
T Consensus        22 ~rvLd~GCG~--G~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGK--SQDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCC--SHHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcC--CHHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            5899999999  457888999999999999999999998654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.85  E-value=0.23  Score=42.73  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~  347 (589)
                      .+|.|+|+|-+|...++.++..|. .|+..|+++++.+.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            569999999999999999998875 899999999998876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.82  E-value=0.057  Score=50.38  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      .+||.|+|+ |.+|+.++..|.++|++|++++|++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999997 999999999999999999999997654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.75  E-value=0.084  Score=45.57  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCC
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      ++|.|||-+ ..|.++|..|++.|..|+..+.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            789999965 55999999999999999999865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.72  E-value=0.45  Score=40.62  Aligned_cols=40  Identities=23%  Similarity=0.172  Sum_probs=33.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...| ..|++.|.++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            56999999999999888777666 47888999999887753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.055  Score=49.80  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 007805          310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (589)
Q Consensus       310 kI~-IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~  350 (589)
                      ||+ |.|+ +-||.++|..|++.|++|++.|++.+.++...++
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   48 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK   48 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence            555 5565 6799999999999999999999999887775443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.67  E-value=0.33  Score=44.17  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |++-|.|+ +-+|.++|..|++.|++|++.+++.+.+++.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45556686 5599999999999999999999999877654

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.62  E-value=0.1  Score=43.27  Aligned_cols=82  Identities=12%  Similarity=-0.002  Sum_probs=59.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (589)
Q Consensus       309 ~kI~IIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (589)
                      ++|+|||+    +..|..+...|.+.||+++.+..++...+                           ........++..
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---------------------------i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---------------------------LFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---------------------------ETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---------------------------eeceecccchhh
Confidence            67999997    77899999999999999999998753100                           112344555544


Q ss_pred             C-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      + ...|+|+.++|  .+...++++++... ...+++.
T Consensus        67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~-g~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRP--PSALMDHLPEVLAL-RPGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHH-CCSCEEE
T ss_pred             ccCCCceEEEecc--HHHHHHHHHHHHhh-CCCeEEE
Confidence            4 56799999998  66667888887665 3455654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.083  Score=48.54  Aligned_cols=41  Identities=24%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.+++..+
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            45667786 679999999999999999999999998877544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=0.55  Score=42.60  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=32.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~   45 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34556675 5699999999999999999999999887764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.34  E-value=0.26  Score=42.46  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            579999999999999999888886 7999999999988863

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.37  Score=44.00  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             ceEEEEcCC-C--CcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGG-L--MGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G-~--mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |+|-|.|++ .  +|.++|..|++.|++|++.+++++..+.+
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            456666764 3  66899999999999999999997655443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.17  E-value=0.45  Score=43.82  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             ceEEEEcC-C--CCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      |++-|.|+ |  -||.++|..|++.|++|++.+++++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            56777786 5  49999999999999999999999653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.15  E-value=0.46  Score=43.86  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=33.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      .+-|.|+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3445565 669999999999999999999999998877544

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.06  E-value=0.028  Score=45.48  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh---CCCeEEEEeCChHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEYL  344 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~  344 (589)
                      ++|.|||+|.+|.-+|..+..   .|.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            689999999999999976654   456899999876544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.05  E-value=0.66  Score=42.27  Aligned_cols=39  Identities=21%  Similarity=0.132  Sum_probs=31.2

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |++-|.|++   -+|.++|..|++.|++|++.+++++..+.+
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~   50 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA   50 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH
Confidence            456677863   489999999999999999999987655443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.56  Score=42.80  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++.++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   46 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34556675 7899999999999999999999999887764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.85  E-value=0.49  Score=43.51  Aligned_cols=38  Identities=26%  Similarity=0.221  Sum_probs=29.9

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHH
Q 007805          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSE-YLLKG  347 (589)
Q Consensus       310 kI~II-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~  347 (589)
                      |++|| | ++-||.++|..|++.|++|++.+++.+ .++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            45555 5 477999999999999999999999865 44443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.84  E-value=0.62  Score=42.01  Aligned_cols=92  Identities=17%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~~  384 (589)
                      ++|.=||+|+  +.++..|++.|++|+++|.+++.++.+.++...       .+.           ++.+ ..|.   ..
T Consensus        43 ~~iLDiGcGt--G~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT--GIPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT--CHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC--CccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhccc
Confidence            5899999998  455677899999999999999999888664321       110           1111 1111   11


Q ss_pred             CCCCCEEEEec----cCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 ~~~aDlVIeav----pe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      -+..|+|+..-    .-+..-.+.+++++..+++|+.+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            13568877541    1123345678999999999987664

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.069  Score=49.17  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             eEEEE--cCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       310 kI~II--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      |+++|  |++-+|.+||..|++.|++|++.|+++++++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            55655  46899999999999999999999999887655

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.056  Score=51.69  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |.|||+|.-|.+-|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.68  E-value=0.036  Score=44.74  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh---CCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~  343 (589)
                      ++|.|||+|..|.-+|..+..   .|.+|+++++++.-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            689999999999999977654   48899999987653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.60  E-value=0.16  Score=46.95  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHHH
Q 007805          309 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIE  352 (589)
Q Consensus       309 ~kI~II-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~  352 (589)
                      .||+|| |+ +-+|.++|..|++   .|++|++.+|+++++++..+++.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            578888 65 5689999999986   69999999999999888766544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.58  E-value=0.44  Score=43.68  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=33.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34555575 779999999999999999999999988777543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=90.46  E-value=0.061  Score=46.12  Aligned_cols=33  Identities=42%  Similarity=0.483  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~  341 (589)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999999999999999999874  789999876

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.43  E-value=0.12  Score=44.79  Aligned_cols=98  Identities=10%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-C
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  384 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  384 (589)
                      |.||+|||+ |..|.-+.+.|.++- +++...--+... .   +.+......+..             .......+.+ .
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G---~~i~~~~p~~~~-------------~~~~~~~~~~~~   63 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-G---KKLEEIFPSTLE-------------NSILSEFDPEKV   63 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-T---SBHHHHCGGGCC-------------CCBCBCCCHHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-C---CcccccCchhhc-------------cccccccCHhHh
Confidence            578999997 999999999998864 355544322111 0   111111000000             0001112222 2


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      .+++|+|+.|+|.....  ++    .+.. .++.|+++++....+
T Consensus        64 ~~~~dvvf~a~p~~~s~--~~----~~~~-~~~~VIDlSadfRl~  101 (176)
T d1vkna1          64 SKNCDVLFTALPAGASY--DL----VREL-KGVKIIDLGADFRFD  101 (176)
T ss_dssp             HHHCSEEEECCSTTHHH--HH----HTTC-CSCEEEESSSTTTCS
T ss_pred             ccccceEEEccccHHHH--HH----HHhh-ccceEEecCcccccc
Confidence            35799999999976642  22    2223 567888999977664

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.43  E-value=0.092  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      .+||.|+|+ |.+|+.++..|+++||+|++.+|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            367999996 99999999999999999999998754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.36  E-value=0.066  Score=48.86  Aligned_cols=32  Identities=31%  Similarity=0.355  Sum_probs=30.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |.|||+|.-|...|..++++|++|+++|.++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999998754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.35  E-value=0.52  Score=43.18  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++++++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45667776 5699999999999999999999999887664

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=90.29  E-value=0.42  Score=43.87  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c--CC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--EF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--~~  385 (589)
                      ++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++..+.       .| ++        .++ ...+. +  .-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~-~~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRF-LEGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEE-EESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeE-Eeccccccccc
Confidence            5789999998 4 46667788899999999999999988665331       11 11        011 11121 1  12


Q ss_pred             CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      ...|+|+-.+.  .....+++.++...++|+..++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            46799887664  5566788888888888876654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.26  E-value=0.043  Score=49.68  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC-------CeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~  342 (589)
                      .||+|||+|.=|-+-|..|+++|       ++|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999999988       47999998763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.06  E-value=0.35  Score=41.31  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=32.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|-+|...++.+...|. .|+..|.++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            479999999888888877777885 6888899999887753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.13  Score=46.55  Aligned_cols=39  Identities=13%  Similarity=-0.170  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      .+|-.+|+|.  +..+..|++.|++|+.+|.+++.++.+.+
T Consensus        47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            5799999999  56788899999999999999999988754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.90  E-value=0.17  Score=47.27  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=33.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  348 (589)
                      |.+-|.|+ +-||.++|..|++.|++|++.|++++++++..
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~   46 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELE   46 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34556675 78999999999999999999999998887653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.074  Score=48.94  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (589)
                      .||.|||+|-+|+.+|..|+..|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            579999999999999999999998 89999865

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.84  E-value=0.72  Score=42.51  Aligned_cols=39  Identities=23%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCCh-HHHHHH
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNS-EYLLKG  347 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~  347 (589)
                      |++-|.| .+-+|.+||..|++.|++|++.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            4455556 58899999999999999999999874 444443

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.1  Score=49.85  Aligned_cols=37  Identities=14%  Similarity=-0.037  Sum_probs=33.4

Q ss_pred             hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEe
Q 007805           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG  132 (589)
Q Consensus        96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~  132 (589)
                      .-..|+|++|.|.|+|+|.-++..||++|+.+++.+.
T Consensus       238 ~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~  274 (333)
T d1uyra1         238 YHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII  274 (333)
T ss_dssp             HHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEE
T ss_pred             cCCCCEEEEEeCCccccceeecccccEEEEeCCceEE
Confidence            3569999999999999999999999999999887654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.83  E-value=0.075  Score=51.35  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      -++|.|+|+ |.+|+.++..|+++||+|++..|++++.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            378999996 9999999999999999999999987654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.75  E-value=0.43  Score=43.48  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       310 kI~-IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      |++ |.|+ +-||.++|..|++.|++|++.|++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            444 5575 669999999999999999999998753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=0.18  Score=46.14  Aligned_cols=41  Identities=20%  Similarity=0.103  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~  349 (589)
                      |++-|.|+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45566686 569999999999999999999999988776543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.58  E-value=0.2  Score=44.63  Aligned_cols=39  Identities=15%  Similarity=0.002  Sum_probs=31.7

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCCeEEE--EeCChHHHH
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVL--KEVNSEYLL  345 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~--~d~~~~~~~  345 (589)
                      .|++|.|.|+ |.+|+.++..|++.|++|.+  ..|++++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4789999995 99999999999999987555  457776544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.50  E-value=0.068  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-----hCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~-----~~G~~V~~~d~~~~  342 (589)
                      --|.|||+|..|.++|..|+     ++|++|+++|+++.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            45999999999999999996     57999999998753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.49  E-value=0.095  Score=49.72  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=31.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      --.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            34699999999999999999999999999998754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.30  E-value=1.1  Score=40.49  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             EEEE-c-CCCCcHHHHHHHHhCCCeEEEEe-CChHHHHHHHHH
Q 007805          311 VAVI-G-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKT  350 (589)
Q Consensus       311 I~II-G-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~  350 (589)
                      |++| | .+-||.++|..|++.|++|++.+ ++++.++...+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~   45 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ   45 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            5555 5 47799999999999999999865 566666665443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.81  E-value=0.25  Score=43.00  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEe
Q 007805          309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKE  338 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d  338 (589)
                      -||||||+ |..|.-+.+.|.++ .+++....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            57999997 99999999999887 34666554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.79  E-value=0.27  Score=43.07  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCcc--CC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS--EF  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--~~  385 (589)
                      .+|.=||+|.  +..+..|++.|++|+.+|++++.++.+.+....       .+ +         ..+.+ ..|..  ..
T Consensus        32 grvLDiGcG~--G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-------~~-~---------~~~~~~~~d~~~~~~   92 (198)
T d2i6ga1          32 GRTLDLGCGN--GRNSLYLAANGYDVTAWDKNPASMANLERIKAA-------EG-L---------DNLQTDLVDLNTLTF   92 (198)
T ss_dssp             CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TT-C---------TTEEEEECCTTTCCC
T ss_pred             CcEEEECCCC--CHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh-------cc-c---------cchhhhheecccccc
Confidence            4799999995  457778899999999999999999987554321       11 1         11211 11221  11


Q ss_pred             -CCCCEEEEec-cC--ChHHHHHHHHHHHHhCCCCcEEE
Q 007805          386 -KDVDMVIEAV-IE--SVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       386 -~~aDlVIeav-pe--~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                       ..-|+|+... ..  +......+++++...++++.+++
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence             3358887422 11  12335678899999999887554

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.30  E-value=0.12  Score=43.76  Aligned_cols=93  Identities=18%  Similarity=0.136  Sum_probs=54.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC
Q 007805          310 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (589)
Q Consensus       310 kI~IIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (589)
                      ||||||+ |..|.-+.+.|.++.+   ++....-+... .+           .+...          ...... ......
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~----------~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFK----------DQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEET----------TEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------ccccc----------CCcccccccchhh
Confidence            7999998 9999999999988865   33434322110 00           00000          001111 111245


Q ss_pred             CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (589)
Q Consensus       385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (589)
                      ..++|+++.+.|...  ..++..+   ....++.|+++++.....
T Consensus        61 ~~~~d~~f~~~~~~~--s~~~~~~---~~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          61 FEGVDIALFSAGSST--SAKYAPY---AVKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             TTTCSEEEECSCHHH--HHHHHHH---HHHTTCEEEECSSTTTTC
T ss_pred             hhhhhhhhhccCccc--hhhHHhh---hccccceehhcChhhhcc
Confidence            688999999998333  3333333   345788899999876643

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.28  E-value=1.6  Score=42.15  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe-
Q 007805           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-  105 (589)
Q Consensus        27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav-  105 (589)
                      .|.++-...-.+++.++.+.-++-.|+|.- -+.|+.|-+-.          .....+.+..++ .++.++..|+|..| 
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~D-~pGF~~G~~~E----------~~gilr~GA~iv-~A~~~~~vP~i~vI~  176 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLPMMILAN-WRGFSGGQRDM----------FNEVLKYGSFIV-DALVDYKQPIIIYIP  176 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCCEEECCC-CCCBCC----------------CTHHHHHHHHH-HHHHTCCSCEEEEEC
T ss_pred             ccCchHHHHHHHHHHHhhhccccceEEeec-CCcccCcHHHH----------HHHHHHHHHHHH-HHHHhcCCCEEEEEe
Confidence            567888889999998887655666777743 35688776522          122344454566 77999999999999 


Q ss_pred             -CCcccchhhHHhh---hcCEEEEeCCceEeccccccCCCCChhhhhhH
Q 007805          106 -EGLALGGGLELAM---GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (589)
Q Consensus       106 -~G~a~GgG~~lal---a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l  150 (589)
                       .|.+.||.....-   ..|..     ..|+.|..+.|.+++-|+....
T Consensus       177 ~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         177 PTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             TTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred             CCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence             6666665544332   11211     1244455556666666665444

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.14  E-value=0.21  Score=45.30  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            56777786 669999999999999999999999877654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.61  E-value=0.1  Score=48.22  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +||.|+|+ |.+|+.++..|.+.||+|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            45999997 9999999999999999999999864

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.52  E-value=0.21  Score=41.12  Aligned_cols=97  Identities=16%  Similarity=0.114  Sum_probs=57.6

Q ss_pred             ceEEEEcCC----------CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHh--hcc
Q 007805          309 RKVAVIGGG----------LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KML  376 (589)
Q Consensus       309 ~kI~IIG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~i  376 (589)
                      +||+|+|+-          .-.-.++..|...|.+|.+||..-+..+..               ...........  ...
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~   78 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVH---------------GANKEYIESKIPHVSS   78 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTS---------------SSCHHHHHHTSHHHHT
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHh---------------hhhhhhhhhccccccc
Confidence            689999973          234567888999999999999743221100               00000000000  112


Q ss_pred             cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (589)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (589)
                      ...+++ ++++++|+||.+++-+.      |.++...+.++.+|.+...-+
T Consensus        79 ~~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          79 LLVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVGFM  123 (136)
T ss_dssp             TBCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSSCC
T ss_pred             eeehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCCCC
Confidence            344555 67899999999997332      344555566777787765443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.48  E-value=0.7  Score=39.87  Aligned_cols=93  Identities=15%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc----c
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~  383 (589)
                      .+|.=||+|.=  .++..+++.+.+|+.+|++++.++.+.+++++.       | ++        .++... .|.    .
T Consensus        35 ~~VLDiGcGsG--~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~-------g-l~--------~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTG--GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH-------G-LG--------DNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTS--HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT-------T-CC--------TTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeE--cccccccccceEEEEecCCHHHHHHHHHHHHHc-------C-CC--------cceEEEECchhhccc
Confidence            46888999983  455567777889999999999999987654321       1 10        122211 111    2


Q ss_pred             CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      .....|+|+...+  .....++++.+...++|+..++.
T Consensus        97 ~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          97 KIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             TSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEEE
Confidence            3467898887654  23345788888888888876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.45  E-value=0.31  Score=42.84  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...++.....|. .|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            479999999999777777666676 8999999999988763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.07  E-value=0.08  Score=45.74  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      ++|.|.|+ |.+|....+.+...|.+|+..+.++++++.+
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            57999996 8989888888778899999999999887765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=87.04  E-value=0.15  Score=46.64  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ..|.|||+|.-|..-|..++++|++|+++|.++.-
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35999999999999999999999999999998653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.02  E-value=0.64  Score=41.97  Aligned_cols=92  Identities=10%  Similarity=0.062  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~~  384 (589)
                      ++|.=||+|+  +.++..+++.|.+|+++|.+++.++.|.++...       .|.           .+++ ..|.   +.
T Consensus        39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-------~~~-----------~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS-------QGL-----------KPRLACQDISNLNI   98 (246)
T ss_dssp             TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-------TTC-----------CCEEECCCGGGCCC
T ss_pred             CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccc-------cCc-----------cceeeccchhhhcc
Confidence            5799999996  457778889999999999999999988664321       110           1111 1222   22


Q ss_pred             CCCCCEEEEe---c--cCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 FKDVDMVIEA---V--IESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 ~~~aDlVIea---v--pe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      -+..|+|+..   +  -.+.+-...+++++..+++|+-+++
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            2456988842   1  1234456678999999999987665

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.83  E-value=0.17  Score=48.85  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      +||.|.|+ |.+|+.|+..|.++||+|+++|+..
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            46999995 9999999999999999999999753

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.58  E-value=0.15  Score=43.21  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      .||.|||+|..|.-+|..|+ .+.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence            48999999999999999886 478999998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=86.52  E-value=0.45  Score=43.27  Aligned_cols=30  Identities=23%  Similarity=0.104  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEe
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKE  338 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d  338 (589)
                      ++|+|-|.|++|...|..|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            689999999999999999999999987654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.28  E-value=0.53  Score=43.68  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc-c
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-S  383 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~  383 (589)
                      .++|.|||+|.  ++++..+++. + -+|+++|+|++.++-+.+...... ...+..            ++.. ..|. +
T Consensus        76 p~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-~~~~d~------------r~~i~~~D~~~  140 (274)
T d1iy9a_          76 PEHVLVVGGGD--GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDP------------RVDVQVDDGFM  140 (274)
T ss_dssp             CCEEEEESCTT--CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-TTTTST------------TEEEEESCSHH
T ss_pred             cceEEecCCCC--cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-ccccCC------------CeEEEechHHH
Confidence            37899999997  4555555654 4 489999999999988766432211 111111            1111 1121 1


Q ss_pred             ----CCCCCCEEEEeccCChH-----HHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          384 ----EFKDVDMVIEAVIESVP-----LKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       384 ----~~~~aDlVIeavpe~~~-----~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                          .=+.-|+||.-.++...     ..+++++.+...++++.+++.++.+
T Consensus       141 ~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         141 HIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             HHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence                11346899866554211     2558889999999999999887643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.17  E-value=0.16  Score=43.57  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ++|.|||+|..|.-+|..|.+.|.+|+++.+.++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            6899999999999999999999999888766543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.15  E-value=2  Score=39.55  Aligned_cols=93  Identities=12%  Similarity=0.163  Sum_probs=59.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccCC-
Q 007805          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF-  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-  385 (589)
                      .+|.=||+|. | +++..+++. |.+|+.+|++++.++.+.++++       +.|. .        ..+.. ..+...+ 
T Consensus        54 ~~VLDiGCG~-G-~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~-------~~~l-~--------~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          54 MTLLDIGCGW-G-TTMRRAVERFDVNVIGLTLSKNQHARCEQVLA-------SIDT-N--------RSRQVLLQGWEDFA  115 (280)
T ss_dssp             CEEEEESCTT-S-HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-------TSCC-S--------SCEEEEESCGGGCC
T ss_pred             CEEEEecCCc-h-HHHHHHHHhCceeEEEecchHHHHHHHHHHHH-------hhcc-c--------cchhhhhhhhhhhc
Confidence            6899999998 3 456666654 9999999999999998866533       2221 1        11211 2233222 


Q ss_pred             CCCCEEE-----EeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805          386 KDVDMVI-----EAVIESVPLKQKIFSELEKACPPHCILAT  421 (589)
Q Consensus       386 ~~aDlVI-----eavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (589)
                      ..-|.|+     +.++  ..-...+|+++...++|+-.++.
T Consensus       116 ~~fD~i~si~~~eh~~--~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         116 EPVDRIVSIEAFEHFG--HENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CCCSEEEEESCGGGTC--GGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             cchhhhhHhhHHHHhh--hhhHHHHHHHHHhccCCCceEEE
Confidence            3456665     2333  12346889999999999876653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.13  E-value=0.2  Score=48.07  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      +||-|.|+ |.+|+.++..|++.|++|+++|+++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            78999995 999999999999999999999998654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.10  E-value=0.18  Score=44.26  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~  341 (589)
                      +||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5799999999999999999876  55899998764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.71  E-value=0.96  Score=42.19  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc---
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---  382 (589)
                      .++|.|||+|.  ++++..+++. +. +|+++|+|++.++.+.+..... ....+..++.          +...+..   
T Consensus        81 pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~r~~----------i~~~Da~~~l  147 (290)
T d1xj5a_          81 PKKVLVIGGGD--GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDPRVN----------LVIGDGVAFL  147 (290)
T ss_dssp             CCEEEEETCSS--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGSTTEE----------EEESCHHHHH
T ss_pred             CcceEEecCCc--hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCCCcE----------EEEccHHHHH
Confidence            47899999997  4556666665 43 7999999999998886644321 1112222110          1111111   


Q ss_pred             -cCC-CCCCEEEEeccCCh-----HHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 -SEF-KDVDMVIEAVIESV-----PLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 -~~~-~~aDlVIeavpe~~-----~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                       +.- +.-|+||.-+++..     -...++|+.+...++++.+++.++.+
T Consensus       148 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         148 KNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             HTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence             111 24788886554321     13457889999999999999887654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.62  E-value=1.4  Score=37.14  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeC-----ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (589)
Q Consensus       309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (589)
                      .||++||-| ++..|++..+..-|.+|++...     +++.++.+.+.                  .......+..+.+.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~   66 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQN------------------AAESGGSFELLHDP   66 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH------------------HHHHTCEEEEESCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHh------------------hhcccceEEEecCH
Confidence            589999974 3557777888888999999865     33333332211                  01112356677777


Q ss_pred             -cCCCCCCEEEEec
Q 007805          383 -SEFKDVDMVIEAV  395 (589)
Q Consensus       383 -~~~~~aDlVIeav  395 (589)
                       ++++++|+|..-.
T Consensus        67 ~ea~~~adviy~~~   80 (163)
T d1pvva2          67 VKAVKDADVIYTDV   80 (163)
T ss_dssp             HHHTTTCSEEEECC
T ss_pred             HHHhhhccEEeecc
Confidence             7899999998543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.51  E-value=1.1  Score=41.81  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--  382 (589)
                      .++|.|||+|.  ++++..+++. + -+|+++|+|++.++-+.+.....- ...+..+            ++. ..|.  
T Consensus        90 pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~r------------v~v~~~Da~~  154 (295)
T d1inla_          90 PKKVLIIGGGD--GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPR------------AEIVIANGAE  154 (295)
T ss_dssp             CCEEEEEECTT--CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTT------------EEEEESCHHH
T ss_pred             CceEEEecCCc--hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCC------------cEEEhhhHHH
Confidence            37899999997  3556666665 3 479999999999988766443221 1122111            111 1111  


Q ss_pred             ---cCCCCCCEEEEeccCCh--H----HHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 ---SEFKDVDMVIEAVIESV--P----LKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 ---~~~~~aDlVIeavpe~~--~----~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                         +.-+.-|+||.-.++..  .    ...++++.+...++++.+++.++.+
T Consensus       155 ~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         155 YVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             HGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence               11134689987654321  1    2468889999999999999877654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=85.41  E-value=0.69  Score=41.06  Aligned_cols=93  Identities=17%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC---
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE---  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---  384 (589)
                      ++|.=||+|.  +..+..+++.|.+|+.+|++++.++.+.+.+..       .+.          .++.+ ..|.+.   
T Consensus        17 ~rVLDiGcG~--G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-------~~~----------~~i~~~~~d~~~l~~   77 (231)
T d1vl5a_          17 EEVLDVATGG--GHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-------NGH----------QQVEYVQGDAEQMPF   77 (231)
T ss_dssp             CEEEEETCTT--CHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TTC----------CSEEEEECCC-CCCS
T ss_pred             CEEEEecccC--cHHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-------ccc----------ccccccccccccccc
Confidence            5799999996  455667888899999999999999887654321       110          12222 122221   


Q ss_pred             -CCCCCEEEEe-ccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805          385 -FKDVDMVIEA-VIESVPLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       385 -~~~aDlVIea-vpe~~~~k~~v~~~l~~~~~~~~ii~  420 (589)
                       -...|+|+-. +.+-..-...+++++...++|+..++
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence             1346888743 22222224477899999999987444

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.24  Score=47.32  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      +||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            46999996 99999999999999999999986

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.23  E-value=0.9  Score=41.79  Aligned_cols=40  Identities=20%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIK  349 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~  349 (589)
                      .|+|| |+ +-||.++|..|++.|++|++.+++ ++.++...+
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~   45 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA   45 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence            37777 54 679999999999999999987654 555555433

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.22  E-value=0.35  Score=45.92  Aligned_cols=103  Identities=13%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--  382 (589)
                      .++|.|||+|.  ++++..+++.  ..+|+++|++++.++.+.+.+...-....+..            +++. ..|.  
T Consensus        78 pk~VLiiG~G~--G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~------------rv~i~~~Da~~  143 (312)
T d1uira_          78 PKRVLIVGGGE--GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDP------------RAVLVIDDARA  143 (312)
T ss_dssp             CCEEEEEECTT--SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCT------------TEEEEESCHHH
T ss_pred             cceEEEeCCCc--hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCC------------ceEEEEchHHH
Confidence            37899999996  4455555554  34899999999999887654322111111111            1111 1111  


Q ss_pred             ---cCCCCCCEEEEeccCC-----h---HHHHHHHHHHHHhCCCCcEEEecCC
Q 007805          383 ---SEFKDVDMVIEAVIES-----V---PLKQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       383 ---~~~~~aDlVIeavpe~-----~---~~k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                         +.-+.-|+||.-.++.     +   -...++++.+...++++.|++.+++
T Consensus       144 ~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         144 YLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence               1113578998765431     1   1235788999999999998886543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.9  Score=42.26  Aligned_cols=103  Identities=20%  Similarity=0.225  Sum_probs=62.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--  382 (589)
                      .++|.|||+|.  ++++..+.+.  ..+|+++|++++.++-+.+..... ....+..+            ++. ..|.  
T Consensus        79 pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~-~~~~~d~r------------v~i~~~Da~~  143 (285)
T d2o07a1          79 PRKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM-AIGYSSSK------------LTLHVGDGFE  143 (285)
T ss_dssp             CCEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGCTT------------EEEEESCHHH
T ss_pred             cCeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhh-ccccCCCC------------ceEEEccHHH
Confidence            37899999997  4566666665  358999999999999886654322 11122221            111 1111  


Q ss_pred             ---cCCCCCCEEEEeccCChH-----HHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 ---SEFKDVDMVIEAVIESVP-----LKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 ---~~~~~aDlVIeavpe~~~-----~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                         +.-+.-|+||.-.++...     ..++.|+.+...++++.+++.++.+
T Consensus       144 ~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         144 FMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence               112346899866643222     2346788899999999998876543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.05  E-value=1.6  Score=39.43  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHH
Q 007805          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (589)
Q Consensus       309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~  345 (589)
                      |.+-|.| .+-||.++|..|++.|++|++.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3455556 478999999999999999999999987644

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.82  E-value=0.26  Score=46.54  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=29.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      +||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999996 99999999999999999999986

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.3  Score=48.48  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (589)
                      .||.|||+|-+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            379999999999999999999998 899999754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.71  E-value=0.73  Score=43.30  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      |+++| |+ +-||.++|..|++.|++|++.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            55555 65 66899999999999999999988754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.54  E-value=0.23  Score=46.62  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      -|.|||+|.-|.+.|..++++|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.38  E-value=0.6  Score=42.57  Aligned_cols=34  Identities=35%  Similarity=0.353  Sum_probs=28.4

Q ss_pred             EEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805          311 VAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (589)
Q Consensus       311 I~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~  344 (589)
                      |+|| |+ +-+|.++|..|+++|++|++.+++.+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5555 54 5699999999999999999999987654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.36  E-value=0.25  Score=43.11  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      -++|.|||+|.-|.+-|..+++.|.+|+++|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            478999999999999999999999999999854

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.29  Score=46.78  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeC
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      +||.|.|+ |.+|+.|+..|++.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999996 99999999999999999999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.24  Score=43.00  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      -++|.|||.|.-|.+=|..+++.|.+|+++++.+
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            3689999999999999999999999999998653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.98  E-value=0.25  Score=45.80  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHh-CCCeEEEEeCChH
Q 007805          310 KVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSE  342 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~  342 (589)
                      -|.|||+|.-|...|..|++ .|++|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.83  E-value=0.47  Score=40.48  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~  348 (589)
                      .+|.|+|+|.+|...+..++..|- .|+..|+++++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            579999999999999988888765 7999999999988763

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.83  E-value=0.55  Score=44.32  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc--
Q 007805          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY--  382 (589)
Q Consensus       308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--  382 (589)
                      .++|.|||+|.  ++++..+++. + -+|+++|++++.++.+.+..... ....+.            .+++. ..|.  
T Consensus       107 pk~VLIiGgG~--G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~-~~~~~d------------prv~i~i~Da~~  171 (312)
T d2b2ca1         107 PKRVLIIGGGD--GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM-SCGFSH------------PKLDLFCGDGFE  171 (312)
T ss_dssp             CCEEEEESCTT--SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT-SGGGGC------------TTEEEECSCHHH
T ss_pred             CCeEEEeCCCc--hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh-ccccCC------------CCeEEEEchHHH
Confidence            36899999997  5566666665 3 48999999999988875432110 000111            11111 1111  


Q ss_pred             ---cCCCCCCEEEEeccCCh-----HHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805          383 ---SEFKDVDMVIEAVIESV-----PLKQKIFSELEKACPPHCILATNTST  425 (589)
Q Consensus       383 ---~~~~~aDlVIeavpe~~-----~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (589)
                         +.-+.-|+||.=+++..     -..+++|+.+...++++.|+++++.+
T Consensus       172 ~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         172 FLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             HHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             HHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence               11234689986554322     23457788899999999999887654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.71  E-value=0.24  Score=44.83  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      .||-|.|+ +-||.++|..|++.|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            57889986 88999999999999999999999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=83.54  E-value=0.29  Score=43.35  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=28.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      |.|||+|.-|.+.|..+++.|.+|.+++.+
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            899999999999999999999999999975

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.47  E-value=0.21  Score=45.07  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       310 kI~II-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            44444 64 789999999999999999999998764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.38  E-value=1.6  Score=37.69  Aligned_cols=94  Identities=13%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc-cCC-
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-SEF-  385 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~~~-  385 (589)
                      ++|.=||+|.  +.++..+++.+.+|+++|.++..++.+.+.+...       + +.       ...+.. ..|. +.+ 
T Consensus        54 ~~VLDiGcG~--G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~-------~-l~-------~~~i~~~~~d~~~~~~  116 (194)
T d1dusa_          54 DDILDLGCGY--GVIGIALADEVKSTTMADINRRAIKLAKENIKLN-------N-LD-------NYDIRVVHSDLYENVK  116 (194)
T ss_dssp             CEEEEETCTT--SHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-------T-CT-------TSCEEEEECSTTTTCT
T ss_pred             CeEEEEeecC--ChhHHHHHhhccccceeeeccccchhHHHHHHHh-------C-Cc-------cceEEEEEcchhhhhc
Confidence            6799999998  4556677888889999999999998876643311       1 11       011222 1222 323 


Q ss_pred             -CCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCcEE
Q 007805          386 -KDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCIL  419 (589)
Q Consensus       386 -~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii  419 (589)
                       +..|+|+...|-  ..+....+++++...++|+.++
T Consensus       117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence             357988865442  2334457788888888887654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.14  E-value=0.56  Score=42.99  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=31.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTI  351 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~  351 (589)
                      |.|-|.|+ +-+|.++|..|++.|++|++. +++.+.+++..+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~   51 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence            34455565 669999999999999999985 56666666654433

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.13  E-value=0.32  Score=44.32  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=28.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ||-|-|.|+ +-||.++|..|++.|++|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            344556675 67999999999999999999999764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.12  E-value=0.32  Score=47.44  Aligned_cols=30  Identities=33%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEe
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKE  338 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d  338 (589)
                      +||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57999996 9999999999999999999998

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=83.09  E-value=0.2  Score=48.14  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeC
Q 007805          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      +|+||.|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            3789999995 99999999999999987665544

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=0.49  Score=37.76  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             ccceEEEEcCCCC-----------cHHHHHHHHhCCCeEEEEeCChHH
Q 007805          307 GVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       307 ~~~kI~IIG~G~m-----------G~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ..+||.|||+|..           +...+..|.+.|+++++++-||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            3589999999864           345567888899999999999874

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=0.47  Score=38.30  Aligned_cols=38  Identities=16%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CccceEEEEcCCCC-----------cHHHHHHHHhCCCeEEEEeCChHH
Q 007805          306 RGVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       306 ~~~~kI~IIG~G~m-----------G~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      ..++||.|||+|..           +...+..|.+.|+++++++-||+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            35799999999874           445567788899999999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.67  E-value=1.1  Score=41.45  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHHhhccccc-CCc-
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGV-LDY-  382 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-  382 (589)
                      ++|.|||+|.-  +++..+++.+. +|+++|+|++.++-+.+....   .++.... . -        -.+++.. .|. 
T Consensus        74 ~~vLiiG~G~G--~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~-~-~--------d~rv~i~~~Da~  141 (276)
T d1mjfa_          74 KRVLVIGGGDG--GTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN-G-K--------HEKAKLTIGDGF  141 (276)
T ss_dssp             CEEEEEECTTS--HHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHT-T-C--------CSSEEEEESCHH
T ss_pred             ceEEEecCCch--HHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhc-c-C--------CCCceEEEChHH
Confidence            68999999973  44455555543 799999999998887542210   0000000 0 0        0111111 111 


Q ss_pred             ---cCCCCCCEEEEeccCChHH-----HHHHHHHHHHhCCCCcEEEecCC
Q 007805          383 ---SEFKDVDMVIEAVIESVPL-----KQKIFSELEKACPPHCILATNTS  424 (589)
Q Consensus       383 ---~~~~~aDlVIeavpe~~~~-----k~~v~~~l~~~~~~~~ii~s~ts  424 (589)
                         ..-+.-|+||.=.++....     ..+.++.+...++++.+++.++.
T Consensus       142 ~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         142 EFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             HHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence               1124578888755543221     25788899999999999887653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.59  E-value=0.39  Score=45.17  Aligned_cols=34  Identities=21%  Similarity=0.087  Sum_probs=30.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      ++|-|.|+ |.+|+.++..|+++||+|+.+|+...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            57899986 99999999999999999999998643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.48  E-value=4.7  Score=39.06  Aligned_cols=111  Identities=11%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc---cC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SE  384 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~  384 (589)
                      .+|.=||+|. |.......+..|. +|+++|.++..++.|.+..+..-......|.-... . ............   +.
T Consensus       218 d~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~-~-~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         218 DTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN-V-EFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             CEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC-E-EEEESSCSTTCHHHHHH
T ss_pred             CEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc-c-eeeeeechhhccccccc
Confidence            4688899998 4443333344565 79999999999999877655432222211110000 0 000000011111   34


Q ss_pred             CCCCCEEEEec-cCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          385 FKDVDMVIEAV-IESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       385 ~~~aDlVIeav-pe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                      +..||+|+..- --..+ ....+.++...++|++.|++.-
T Consensus       295 ~~~adVV~inn~~f~~~-l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         295 IPQCDVILVNNFLFDED-LNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             GGGCSEEEECCTTCCHH-HHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccceEEEEecccCchH-HHHHHHHHHHhcCCCcEEEEec
Confidence            57788888632 11233 3466688888999999777643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.90  E-value=0.71  Score=39.50  Aligned_cols=39  Identities=8%  Similarity=-0.019  Sum_probs=33.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~  347 (589)
                      .+|.|.|+ |.+|...++.+...|.+|+..+.++++.+.+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            47999885 9999998888888899999999998877654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.66  E-value=0.36  Score=42.99  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      -|.|||+|.-|..-|..+++.|.+|+++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999999764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=0.36  Score=39.62  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh----CCCeEEEEeCChHHH
Q 007805          309 RKVAVIGGGLMGSGIATAHIL----NNIYVVLKEVNSEYL  344 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~----~G~~V~~~d~~~~~~  344 (589)
                      ++|.|||+|..|.-+|..|+.    .|.+|+++++++.-+
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            579999999999999988853    589999999876543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.49  E-value=0.4  Score=42.83  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      -|.|||+|.-|.+-|..+++.|.+|+++|.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38999999999999999999999999999765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.20  E-value=0.36  Score=45.67  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      -|.|||+|.-|.+.|..++++|++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=81.17  E-value=2.1  Score=38.78  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~  346 (589)
                      |.|-|.|+ +-+|.++|..|++.|.+|++.+++.+..+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~   44 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA   44 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence            45667776 458999999999999999888776655433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.03  E-value=0.49  Score=43.63  Aligned_cols=95  Identities=12%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc-c
Q 007805          309 RKVAVIGGGLMGSGIATAHILN---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-S  383 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~  383 (589)
                      .+|.=+|+|.  ++++..|++.   +-+|+.+|++++.++.+.++++.......              .++.. ..|. +
T Consensus        98 ~~VLE~G~Gs--G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~--------------~nv~~~~~d~~~  161 (264)
T d1i9ga_          98 ARVLEAGAGS--GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP--------------DNWRLVVSDLAD  161 (264)
T ss_dssp             CEEEEECCTT--SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC--------------TTEEEECSCGGG
T ss_pred             CEEEecCcCC--cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCC--------------ceEEEEeccccc
Confidence            4688888877  4444444442   23899999999999998776654321100              11111 1122 1


Q ss_pred             -C--CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805          384 -E--FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (589)
Q Consensus       384 -~--~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (589)
                       .  -...|.||+-+|+..    +.+.++...++|+..++.-+
T Consensus       162 ~~~~~~~fDaV~ldlp~P~----~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPW----EVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGG----GGHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCCcceEEEecCCHH----HHHHHHHhccCCCCEEEEEe
Confidence             1  245799999998666    44667777888888776543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=0.41  Score=45.59  Aligned_cols=34  Identities=29%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             ceEE-EEcC-CCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805          309 RKVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (589)
Q Consensus       309 ~kI~-IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~  342 (589)
                      +||+ |.|+ |.+|+.++..|.++||+|+.+|+.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            5784 7785 99999999999999999999998643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=0.43  Score=40.79  Aligned_cols=31  Identities=23%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      -|.|||+|..|..-|..+++.|.+|++++..
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3889999999999999999999999999864

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=80.75  E-value=0.72  Score=38.52  Aligned_cols=60  Identities=10%  Similarity=0.017  Sum_probs=42.3

Q ss_pred             ceEEEEcC---CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805          309 RKVAVIGG---GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (589)
Q Consensus       309 ~kI~IIG~---G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (589)
                      .||++||-   +.+..|++..+.+-|.+|++.....=..+.                           ..+....+. ++
T Consensus         4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~---------------------------~~~~~~~~~~ea   56 (151)
T d2at2a2           4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE---------------------------NTFGTYVSMDEA   56 (151)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccc---------------------------cceeEEEechhc
Confidence            47999997   468999999999999999888764211100                           123445555 78


Q ss_pred             CCCCCEEEEec
Q 007805          385 FKDVDMVIEAV  395 (589)
Q Consensus       385 ~~~aDlVIeav  395 (589)
                      ++++|+|....
T Consensus        57 ~~~aDviy~~r   67 (151)
T d2at2a2          57 VESSDVVMLLR   67 (151)
T ss_pred             cccCceeeeeE
Confidence            99999887543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=80.62  E-value=0.42  Score=45.77  Aligned_cols=30  Identities=20%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhCCCeEEEEeC
Q 007805          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      -|.|||+|.=|..+|..|+++|++|++.+.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            488999999999999999999999999986

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.58  E-value=10  Score=34.54  Aligned_cols=95  Identities=14%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccCC-C
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF-K  386 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-~  386 (589)
                      .+|.=||+|.-|.++ ....+.|.+|+++++++++++.+.+++.       +.|..         +++++ ..|...+ .
T Consensus        64 ~~VLDiGCG~G~~a~-~~a~~~g~~v~git~s~~Q~~~a~~~~~-------~~g~~---------~~v~~~~~d~~~~~~  126 (285)
T d1kpga_          64 MTLLDVGCGWGATMM-RAVEKYDVNVVGLTLSKNQANHVQQLVA-------NSENL---------RSKRVLLAGWEQFDE  126 (285)
T ss_dssp             CEEEEETCTTSHHHH-HHHHHHCCEEEEEESCHHHHHHHHHHHH-------TCCCC---------SCEEEEESCGGGCCC
T ss_pred             CEEEEecCcchHHHH-HHHhcCCcceEEEeccHHHHHHHHHHHH-------hhhhh---------hhhHHHHhhhhcccc
Confidence            679999999844333 2234469999999999999998866543       22221         12222 2232222 2


Q ss_pred             CCCEEEE-eccCCh--HHHHHHHHHHHHhCCCCcEEE
Q 007805          387 DVDMVIE-AVIESV--PLKQKIFSELEKACPPHCILA  420 (589)
Q Consensus       387 ~aDlVIe-avpe~~--~~k~~v~~~l~~~~~~~~ii~  420 (589)
                      .-|-|+. -..|-+  .-...+|+++...++|+..++
T Consensus       127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~  163 (285)
T d1kpga_         127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML  163 (285)
T ss_dssp             CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEE
Confidence            3454441 111222  224688999999999986554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.46  E-value=0.4  Score=45.71  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeC
Q 007805          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (589)
Q Consensus       308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (589)
                      .++|-|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            478999986 99999999999999999999986

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.44  E-value=0.23  Score=42.60  Aligned_cols=31  Identities=23%  Similarity=0.116  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEV  339 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~  339 (589)
                      -+|+|||+|.||...+..+.+..  ..+.++|.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            57999999999999887776532  23445543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.43  E-value=0.37  Score=42.60  Aligned_cols=31  Identities=26%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (589)
Q Consensus       311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (589)
                      |.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8899999999999999999999999999764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.29  E-value=0.18  Score=43.59  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (589)
                      .+|.|||+|..|..+|..|.+.|.+|.+..++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            35999999999999999999999877665543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=80.14  E-value=0.86  Score=41.53  Aligned_cols=83  Identities=14%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (589)
Q Consensus       309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (589)
                      +||+|||.  +  +....+.+.|.+++++|+++..                  |...            .....+.+.+|
T Consensus       123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~------------------gd~p------------~~~~~~lLp~a  168 (251)
T d2h1qa1         123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE------------------GDYP------------LPASEFILPEC  168 (251)
T ss_dssp             SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT------------------TCEE------------GGGHHHHGGGC
T ss_pred             CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC------------------CCCC------------chHHHHhhhcC
Confidence            78999975  5  4555677889999999999742                  1100            01111557899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCc-EEEe-cCCCCCH
Q 007805          389 DMVIEAVIESVPLKQKIFSELEKACPPHC-ILAT-NTSTIDL  428 (589)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s-~ts~~~~  428 (589)
                      |+||.+-   ..+....+..|..++++.. ++.. -|+.+.+
T Consensus       169 D~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P  207 (251)
T d2h1qa1         169 DYVYITC---ASVVDKTLPRLLELSRNARRITLVGPGTPLAP  207 (251)
T ss_dssp             SEEEEET---HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCG
T ss_pred             CEEEEEe---chhhcCCHHHHHHhCCcCCEEEEECCCcccCH
Confidence            9999887   5677788889999998764 4333 3333433

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.12  E-value=4  Score=36.32  Aligned_cols=35  Identities=29%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (589)
Q Consensus       309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~  343 (589)
                      |++-|.|+ +-||.++|..|++.|++|++.+++.+.
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            45666676 569999999999999999999998653