Citrus Sinensis ID: 007811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
ccHHHHccccccEEEEEEccccccccccccccccccEEEEccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccEEEEccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHccEEEcccccccccHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHcccccccccccHHHHHHcccccEEEccccccc
ccEEEEEcccccHHEEEHHHHHHHHHccccccccccEEEEEccccccEEEEEEcccccHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHEHHcHHHHHHHHHHcHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHccccccEccccHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEccHHHHHHHccccHHHHccccccHHHHHHHHHccccccccHHHHHHHHcEEEcccccccccHHHHHHHHHHHHcccccEEEEEcccccccEEEHHHHHHHHcccHccEEEEHHHHHcccccEEEHHHccccc
MAELLFEtygvpsvafgvDAAFSYkynqqygicnkdglaicpgfstthvipfvegepvyrgscrtniggyhITDYLKQLLslkhpqhmtKLTWEKVEDLKmehcyiapdyfseaqLFQKGTKEaehktrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFlsdtgyvsRQEIESTLVKLTQSLRKAKGERKVEQAELEKtdasmnekyplihipdnMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEerrlenpeLYVEQMRAKYKELSEKIDQRKrlktngnhtngnntsggvgrgerLNAAQRERMRLLTTAafdrgkgedtfgakdeDWQLYKLMsrdnddddeemDENEAELARISARLqevdptfvpkqesgptqsaaeiprvrpltkedFQIVLgverfrcpeilfrpnwvgidqvgldemtgvsirrlptkdeDLEQRLTSSilmtggcclfpGMSERLEAGIrmirpcgapikvvraldpvldawrGASVyatklqfpqqtfsrmdyYEKGENWLRRYQLQYTL
MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTqslrkakgerkveqaelektdasmnekyplIHIPDNMLSLEQLKEKRRQIFLktttegrqrakqkrveeeleqekknqeeeerrlenpelyVEQMRAKYKELSEKIDQrkrlktngnhtngnntsggvgrgERLNAAQRERMRLLTtaafdrgkgedtfgakdedwqLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPtfvpkqesgptqsaaeiprvrpltkedFQIVLGVErfrcpeilfrpnwvgidqvgldemtgvsirrlptkdedLEQRLTssilmtggCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVyatklqfpqqtfsrMDYYEKGENWLRRYQLQYTL
MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVpppteeppseeeiarkaaikerQGQRLREMAEAKRSSRINELENQIHGlefllqqleqveeNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVeeeleqekknqeeeerrlenPELYVEQMRAKYKELSEKIDQRKRLKtngnhtngnntsggvgrgERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRdnddddeemdeneaeLARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
***LLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWV*******************************************NQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV********************************LIHI************************************************************************************************************************************WQLY*******************************************************LTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPT****LEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ***
MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQ***********KTRCWQLPWVPPPTEEPP*************************************IHGLEFL*******************GYVSRQEIESTLV*******************************PLIHIPDNMLS**********IFL***********************************PELYVEQMR*********************************************************KGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFV*********************KEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ*********TRCWQLPWVP************ARKAAIK****************SRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQS***************EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTT*****************************ENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRD*************ELARISARLQEVDPTFV***********AEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
*AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKA*******************EKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLK**********************************A*FDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGP*QSA**IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL*YTL
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MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRxxxxxxxxxxxxxxxxxxxxxxxxDIAAFLSDTGYVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELYxxxxxxxxxxxxxxxxxxxxxKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDxxxxxxxxxxxxxxxxxxxxxLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query589 2.2.26 [Sep-21-2011]
Q940Z2724 Actin-related protein 5 O yes no 0.996 0.810 0.728 0.0
A2ZP58575 Actin-related protein 5 O yes no 0.962 0.986 0.586 0.0
A2WKK5575 Actin-related protein 5 O N/A no 0.962 0.986 0.586 0.0
Q9Y7X8721 Actin-like protein arp5 O yes no 0.945 0.772 0.289 1e-60
P53946755 Actin-related protein 5 O yes no 0.967 0.754 0.279 6e-55
Q54E71684 Actin-related protein 5 O yes no 0.896 0.771 0.299 1e-52
Q9VEC3648 Actin-related protein 5 O yes no 0.848 0.771 0.277 6e-52
Q17GZ9655 Actin-related protein 5 O N/A no 0.495 0.445 0.302 6e-30
Q293V2651 Actin-related protein 5 O yes no 0.325 0.294 0.346 4e-25
Q9H9F9607 Actin-related protein 5 O yes no 0.198 0.192 0.404 5e-22
>sp|Q940Z2|ARP5_ARATH Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2 Back     alignment and function desciption
 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/589 (72%), Positives = 518/589 (87%), Gaps = 2/589 (0%)

Query: 1   MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 60
           MAELLFETYGVP+VAFGVDAAFSYKYNQ +GIC KDG+ +CPGF+TTH IPFV+GEP+Y+
Sbjct: 135 MAELLFETYGVPAVAFGVDAAFSYKYNQLHGICKKDGIVLCPGFTTTHSIPFVDGEPIYK 194

Query: 61  GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKG 120
           GS RTNIGGYH+TDYLKQLLSLK+P H ++ TWEK EDLK+EHCYIAPDY SE +LFQ+G
Sbjct: 195 GSSRTNIGGYHVTDYLKQLLSLKYPFHSSRFTWEKAEDLKLEHCYIAPDYASEIRLFQEG 254

Query: 121 TKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELEN 180
            KEAE KT  WQLPW+PPPTE PPSEEEIARKAAI+E+QGQRLREMAEAKR S+IN++EN
Sbjct: 255 RKEAEEKTSYWQLPWIPPPTEVPPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMEN 314

Query: 181 QIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240
           Q+  L FLL+Q++QVEE+DI  FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE 
Sbjct: 315 QLISLRFLLKQVDQVEEDDIPTFLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEY 374

Query: 241 EKTDASM-NEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKK 299
           E+   S+ NEKYPL+++PD++L+ EQLK+K+RQ+FLKTT EGR RA+QKR EEELE+EK+
Sbjct: 375 EENPDSLNNEKYPLMNVPDDILTPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKR 434

Query: 300 NQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNA 359
           NQ EEERR ENPE Y+E+++A+YKE+ E+++Q+KRLKTNG+ +NGNN SGG+GRGERL+A
Sbjct: 435 NQLEEERRRENPESYLEELQAQYKEVLERVEQKKRLKTNGS-SNGNNKSGGIGRGERLSA 493

Query: 360 AQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISAR 419
           AQRERMRLLTTAAFDRGKGEDTFG++DEDWQLYKLMS+DNDDDDE+ D +EAELAR+S+R
Sbjct: 494 AQRERMRLLTTAAFDRGKGEDTFGSRDEDWQLYKLMSKDNDDDDEQPDSDEAELARLSSR 553

Query: 420 LQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV 479
           LQE+DPTFV K E   +Q++ E+PRVRPLT+ED++IV+G+ERFRCPEILF PN +GIDQV
Sbjct: 554 LQEIDPTFVQKVEGELSQTSGEVPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQV 613

Query: 480 GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKV 539
           GLDEM G SIRRLP  +++LE+RLTSSILMTGGC L PGM+ERLE GIRMIRPCG+PI V
Sbjct: 614 GLDEMAGTSIRRLPHDEKELEERLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINV 673

Query: 540 VRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 588
           VRA+DPVLDAWRGAS +A  L F    F++MDY EKGE+WLR YQ++Y 
Sbjct: 674 VRAMDPVLDAWRGASAFAANLNFLGNAFTKMDYDEKGEDWLRNYQIRYN 722
Probable subunit of a chromatin-remodeling complex. Involved in DNA repair. Required for multicellular development of all organs.
Arabidopsis thaliana (taxid: 3702)
>sp|A2ZP58|ARP5_ORYSJ Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2 Back     alignment and function description
>sp|A2WKK5|ARP5_ORYSI Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y7X8|ARP5_SCHPO Actin-like protein arp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arp5 PE=1 SV=1 Back     alignment and function description
>sp|P53946|ARP5_YEAST Actin-related protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARP5 PE=1 SV=1 Back     alignment and function description
>sp|Q54E71|ARP5_DICDI Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1 Back     alignment and function description
>sp|Q9VEC3|ARP5_DROME Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1 Back     alignment and function description
>sp|Q17GZ9|ARP5_AEDAE Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1 Back     alignment and function description
>sp|Q293V2|ARP5_DROPS Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2 Back     alignment and function description
>sp|Q9H9F9|ARP5_HUMAN Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
255581531639 conserved hypothetical protein [Ricinus 0.998 0.920 0.79 0.0
225449462 725 PREDICTED: actin-related protein 5 [Viti 1.0 0.812 0.781 0.0
449459898 720 PREDICTED: actin-related protein 5-like 0.993 0.812 0.779 0.0
147775114607 hypothetical protein VITISV_042044 [Viti 1.0 0.970 0.778 0.0
356539858 724 PREDICTED: actin-related protein 5-like 0.998 0.812 0.769 0.0
356539860 730 PREDICTED: actin-related protein 5-like 0.998 0.805 0.769 0.0
356569368 723 PREDICTED: actin-related protein 5-like 0.998 0.813 0.783 0.0
356501069 722 PREDICTED: actin-related protein 5-like 0.998 0.814 0.774 0.0
356501071 728 PREDICTED: actin-related protein 5-like 0.998 0.807 0.774 0.0
15450490590 At3g12380/MQC3.20 [Arabidopsis thaliana] 0.996 0.994 0.728 0.0
>gi|255581531|ref|XP_002531571.1| conserved hypothetical protein [Ricinus communis] gi|223528801|gb|EEF30807.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/600 (79%), Positives = 538/600 (89%), Gaps = 12/600 (2%)

Query: 1   MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 60
           MAELLFETYGVPSVAFGVDAAFSYKYNQQ GIC+KDGLAICPGF+TTHVIPF++GEPVY+
Sbjct: 39  MAELLFETYGVPSVAFGVDAAFSYKYNQQRGICDKDGLAICPGFTTTHVIPFIDGEPVYK 98

Query: 61  GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKG 120
           G CRTNIGG+H+TDYLKQLLSLK+P HM + TWEKVEDLKMEHCYIAPDY SEA+LFQKG
Sbjct: 99  GCCRTNIGGFHVTDYLKQLLSLKYPHHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKG 158

Query: 121 TKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELEN 180
           TKEAE KT+CWQLPWVPPP EEPPSEEE+ARKAA KERQGQRLREMA  K+S+RIN+LEN
Sbjct: 159 TKEAEDKTKCWQLPWVPPPVEEPPSEEELARKAAAKERQGQRLREMAVLKKSTRINDLEN 218

Query: 181 QIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240
           Q+  L+FLLQQLEQVEE++I +FL DTGYVS+QEIES +V+ TQSLRKAKGE K EQAEL
Sbjct: 219 QLRDLKFLLQQLEQVEEDEIPSFLRDTGYVSKQEIESLIVQKTQSLRKAKGEPKAEQAEL 278

Query: 241 E-KTDASMNEKYPLIHIPDNMLSLEQ-----------LKEKRRQIFLKTTTEGRQRAKQK 288
           E K+D+S NE+YPL+ IPD+ L+ EQ           LKEK++Q+FL+TT  GRQ+AKQK
Sbjct: 279 EEKSDSSTNERYPLLEIPDDELTSEQACSSFHDVSSQLKEKKKQLFLRTTALGRQQAKQK 338

Query: 289 RVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTS 348
           R EEELE+E+KNQ +EE+RLENPELY+E+ RAKYKELSEK++QRKRLKTNGNH+NGNN S
Sbjct: 339 RREEELERERKNQLDEEKRLENPELYLEETRAKYKELSEKVEQRKRLKTNGNHSNGNNVS 398

Query: 349 GGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDE 408
           GGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMS+DNDDD E  DE
Sbjct: 399 GGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDGEGPDE 458

Query: 409 NEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEIL 468
           +E ELARIS+RLQE+DPTF+PK + GP+Q A E+P+ RPLTKEDFQ++LGVERFRCPEIL
Sbjct: 459 DEVELARISSRLQEIDPTFIPKPDVGPSQPANEMPKPRPLTKEDFQVLLGVERFRCPEIL 518

Query: 469 FRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIR 528
           F PN VGIDQ GLDEM GVSIRRLP+K+EDLE+RLT+SI +TGG CL+PGMSERLE+GIR
Sbjct: 519 FHPNLVGIDQAGLDEMAGVSIRRLPSKEEDLEKRLTNSIFITGGSCLYPGMSERLESGIR 578

Query: 529 MIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 588
           MIRP G+PIKVVRALDPVLDAWRGA+ YA  LQFPQQTFSRMDYYEKGE+WLRRYQ  YT
Sbjct: 579 MIRPNGSPIKVVRALDPVLDAWRGAATYAAALQFPQQTFSRMDYYEKGEDWLRRYQFCYT 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449462|ref|XP_002283252.1| PREDICTED: actin-related protein 5 [Vitis vinifera] gi|296086213|emb|CBI31654.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459898|ref|XP_004147683.1| PREDICTED: actin-related protein 5-like [Cucumis sativus] gi|449503255|ref|XP_004161911.1| PREDICTED: actin-related protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147775114|emb|CAN74904.1| hypothetical protein VITISV_042044 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539858|ref|XP_003538410.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356539860|ref|XP_003538411.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356569368|ref|XP_003552874.1| PREDICTED: actin-related protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356501069|ref|XP_003519351.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356501071|ref|XP_003519352.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|15450490|gb|AAK96538.1| At3g12380/MQC3.20 [Arabidopsis thaliana] gi|24111383|gb|AAN46815.1| At3g12380/MQC3.20 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
ASPGD|ASPL0000051593770 AN2487 [Emericella nidulans (t 0.960 0.735 0.280 4.8e-62
POMBASE|SPBC365.10721 arp5 "actin-like protein Arp5" 0.966 0.789 0.260 5.5e-54
SGD|S000005004755 ARP5 "Nuclear actin-related pr 0.721 0.562 0.248 7.4e-51
FB|FBgn0038576648 Arp5 "Actin-related protein 5" 0.478 0.435 0.284 9.1e-49
UNIPROTKB|Q293V2651 Arp5 "Actin-related protein 5" 0.478 0.433 0.279 7.6e-47
DICTYBASE|DDB_G0291728684 arpE "actin related protein 5" 0.544 0.469 0.284 8.2e-46
CGD|CAL0000047776 orf19.504 [Candida albicans (t 0.650 0.493 0.260 2.7e-45
UNIPROTKB|G3N1W1611 ACTR5 "Uncharacterized protein 0.429 0.414 0.288 2.6e-41
UNIPROTKB|F1SDX1608 ACTR5 "Uncharacterized protein 0.439 0.425 0.278 9.6e-41
UNIPROTKB|Q9H9F9607 ACTR5 "Actin-related protein 5 0.427 0.415 0.287 1.1e-40
ASPGD|ASPL0000051593 AN2487 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 167/595 (28%), Positives = 266/595 (44%)

Query:     1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR 60
             M E+LFE Y  PSVA+G+D+ FSY+YN+       DGL +    ++THVIP +  + +  
Sbjct:   189 MNEILFECYSAPSVAYGIDSLFSYRYNR-----GTDGLIVDSSHTSTHVIPVLNSKALLS 243

Query:    61 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKG 120
                R N GG H ++YL +L+ LK+P    K+T  ++EDL   HCY++ DY  E   +   
Sbjct:   244 NCSRLNFGGMHASEYLLKLMRLKYPTFPGKMTEHQMEDLMHNHCYVSKDYDRELSGYLDW 303

Query:   121 TKEAEHKTRCWQLPWVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELEN 180
             T   E +    Q P+                        G+RL+E A   R  ++ + E 
Sbjct:   304 TG-LEDRDHVIQYPFTEHIVPEKTEEELARIAERKKES-GRRLQEQAAKMRLEKLMKKEQ 361

Query:   181 QIHGXXXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240
             ++                +    L          +E  +  L +S+++++ +   +    
Sbjct:   362 ELEYYKDLQRGLQSETKKEKTRILDAEDLKDEAHLERLIRDLERSIKRSRNK---DLGNE 418

Query:   241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXX 300
             E+ +AS    +PL+ +PD  L    LKEKR Q  +K+  + RQRAK+++           
Sbjct:   419 EQEEASEEMSFPLLDVPDEELDEAGLKEKRHQRLMKSNVDARQRAKEEKEREQARKDEEL 478

Query:   301 XXXXXXXXXXPELYVEQMRAKYKELSEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAA 360
                       PE +V + RA+ + L ++I +R R+K                    L A 
Sbjct:   479 RLDREKRENDPEGWVAERRAQRQNLLQRIKERDRMKADLGNRKSLASQMRMKTLANLAAD 538

Query:   361 QRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRXXXXXXXXXXXXXXXLARISARL 420
               ++ R        RG  +D FGA DEDW +Y+ ++                L  +   L
Sbjct:   539 GPKKRR--------RGGDDDDFGANDEDWGVYRTVATGEQSDDDEEEDLSGMLDSVEREL 590

Query:   421 QEVDPTFVPKQ----ESGPTQSAAEI------PRVRPLTKEDFQIVLGVERFRCPEILFR 470
              E DP F        +S  T+S   +      P      +E  QI L VER R PE++F+
Sbjct:   591 LEYDPEFTENHTLAAQSDWTKSLIHVFLRGPWPFDPESQREAHQIHLNVERIRVPEVVFK 650

Query:   471 PNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMI 530
             P+  GIDQ G+ E+    + +  +  E+ + RL   + +TGG  LF    ER     R  
Sbjct:   651 PSIAGIDQAGIVEIAADIVNQRFSNPEE-QARLLRDVFLTGGNTLFQNFDERFRNDFRAC 709

Query:   531 RPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 585
              P  A + V RA DP+LDAW+GA+ +A+     + + SR +Y EKG  +L+ + L
Sbjct:   710 LPLEAQLTVRRASDPILDAWKGAAQWASGSGLAKSSISREEYLEKGSEYLKEHDL 764
GO:0003674 "molecular_function" evidence=ND
GO:0005829 "cytosol" evidence=IEA
GO:0031011 "Ino80 complex" evidence=IEA
GO:0006338 "chromatin remodeling" evidence=IEA
POMBASE|SPBC365.10 arp5 "actin-like protein Arp5" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005004 ARP5 "Nuclear actin-related protein involved in chromatin remodeling" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0038576 Arp5 "Actin-related protein 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q293V2 Arp5 "Actin-related protein 5" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291728 arpE "actin related protein 5" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000047 orf19.504 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1W1 ACTR5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDX1 ACTR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9F9 ACTR5 "Actin-related protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940Z2ARP5_ARATHNo assigned EC number0.72830.99660.8107yesno
A2WKK5ARP5_ORYSINo assigned EC number0.58620.96260.9860N/Ano
A2ZP58ARP5_ORYSJNo assigned EC number0.58620.96260.9860yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
pfam00022367 pfam00022, Actin, Actin 2e-23
smart00268373 smart00268, ACTIN, Actin 4e-23
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 6e-19
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 9e-19
pfam00022367 pfam00022, Actin, Actin 2e-17
smart00268373 smart00268, ACTIN, Actin 2e-17
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-16
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 5e-16
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 2e-14
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 5e-12
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-11
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 7e-09
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 3e-08
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 7e-08
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-06
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 4e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.001
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG1293564 COG1293, COG1293, Predicted RNA-binding protein ho 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  101 bits (255), Expect = 2e-23
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 427 FVPKQESGPTQSAAEIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMT 485
           +V     G T +++  P        D   I+LG ERFR PEILF P+ +G +  G+ E+ 
Sbjct: 211 YVSDDPFGDTAASSSPP-TVSYELPDGYVIILGNERFRVPEILFNPSLIGSESAGIPELI 269

Query: 486 GVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA-LD 544
             SI        DL   L ++I++TGG  LFPG +ERLE  +  + P G  +K++    +
Sbjct: 270 YDSINACDV---DLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPNE 326

Query: 545 PVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 583
               AW G S+ A+   F Q   S+ +Y E G + + R 
Sbjct: 327 RKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERK 365

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 589
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 99.88
PRK13930335 rod shape-determining protein MreB; Provisional 99.71
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.69
PRK13927334 rod shape-determining protein MreB; Provisional 99.65
PRK13929335 rod-share determining protein MreBH; Provisional 99.63
PRK13928336 rod shape-determining protein Mbl; Provisional 99.39
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.02
COG1077342 MreB Actin-like ATPase involved in cell morphogene 97.35
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 97.18
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 96.43
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 96.02
PRK15080267 ethanolamine utilization protein EutJ; Provisional 95.98
PRK09472420 ftsA cell division protein FtsA; Reviewed 95.9
PRK13917344 plasmid segregation protein ParM; Provisional 94.95
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 94.37
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 93.46
PRK15080267 ethanolamine utilization protein EutJ; Provisional 93.45
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 93.33
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 93.3
PRK01433595 hscA chaperone protein HscA; Provisional 89.95
PRK09472420 ftsA cell division protein FtsA; Reviewed 89.11
CHL00094 621 dnaK heat shock protein 70 88.48
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 88.08
PTZ00400663 DnaK-type molecular chaperone; Provisional 87.95
CHL00094621 dnaK heat shock protein 70 87.19
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 87.1
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 86.37
TIGR01991599 HscA Fe-S protein assembly chaperone HscA. The Hea 86.36
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 86.35
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 86.04
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 85.92
PRK05183616 hscA chaperone protein HscA; Provisional 85.85
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 85.68
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 85.65
PRK00290627 dnaK molecular chaperone DnaK; Provisional 85.56
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 85.42
PTZ00400 663 DnaK-type molecular chaperone; Provisional 85.01
COG4820277 EutJ Ethanolamine utilization protein, possible ch 84.5
PLN03184673 chloroplast Hsp70; Provisional 84.07
PRK13411 653 molecular chaperone DnaK; Provisional 83.89
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 83.59
PRK13410668 molecular chaperone DnaK; Provisional 83.35
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 82.95
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 82.76
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 81.81
PTZ00186657 heat shock 70 kDa precursor protein; Provisional 81.64
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 80.52
PRK05183 616 hscA chaperone protein HscA; Provisional 80.22
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-99  Score=804.43  Aligned_cols=502  Identities=41%  Similarity=0.667  Sum_probs=440.7

Q ss_pred             ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811            1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL   80 (589)
Q Consensus         1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL   80 (589)
                      |+|+||||||||+|.+++++++|+|.+-...+ ..+|+||++|+++|||+||.+|.++...++|+||||+++++||.+|+
T Consensus       135 m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~-~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lm  213 (645)
T KOG0681|consen  135 MVELLFETYGVPKVAYGIDSLFSFYHNYGKSS-NKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLM  213 (645)
T ss_pred             HHHHHHHHcCCcceeechhhHHHHhhccCccc-CcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHH
Confidence            78999999999999999999999997542222 34899999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811           81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG  160 (589)
Q Consensus        81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~  160 (589)
                      +.+||.|++.+++..++.+++.|||||.||..|+..+.. ++++++++.++||||++.+.     +.||+++|++|++  
T Consensus       214 q~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d~~d~~~~~~qlP~~evl~-----~~e~~l~Ae~kqe--  285 (645)
T KOG0681|consen  214 QLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MDYYDENRNYFQLPYTEVLA-----EVELALTAEKKQE--  285 (645)
T ss_pred             hccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hhhhhccceEEecccccccc-----hhhhhccHHHHHH--
Confidence            999999999999999999999999999999999999998 99999999999999997542     2259999999999  


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811          161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL  240 (589)
Q Consensus       161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~  240 (589)
                      +|||++++-+|.+|+.++|+.=                           .|+++|+++ .       |++.    ++ ++
T Consensus       286 kRlq~~a~lkrv~k~~~re~~r---------------------------edeqql~~~-~-------kaq~----e~-e~  325 (645)
T KOG0681|consen  286 KRLQEQAALKRVEKINARENRR---------------------------EDEQQLESY-N-------KAQG----EQ-ES  325 (645)
T ss_pred             HHHHHHHHHhhHHHHHHHHhhh---------------------------hhHHHHHHH-H-------Hhhh----ch-hc
Confidence            9999999999999999887721                           345556555 2       2221    11 11


Q ss_pred             hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811          241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA  320 (589)
Q Consensus       241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~  320 (589)
                      ..   ..+.+|||++|| ++|+++|||+||+|+|||++++||+|+|.+|++      |++.+++++|.+|+.+|++++|.
T Consensus       326 ~~---D~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar~rar~eke~------Er~~k~~~~r~~~~~swl~e~r~  395 (645)
T KOG0681|consen  326 NL---DLEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDARLRARVEKEL------ERLNKLEEEREENLISWLEELRE  395 (645)
T ss_pred             Cc---cHhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhhccccccchH------HHhhcccccccccHHHHHHHHHH
Confidence            11   123589999999 999999999999999999999999999999944      44466777888999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhc---c----CCCCCCCCCCchhhHHHH
Q 007811          321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFD---R----GKGEDTFGAKDEDWQLYK  393 (589)
Q Consensus       321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~---~----~~~~d~fg~~d~dw~vy~  393 (589)
                      +++.|++++++++++++++              ++|+|+++|.|||.|+.||.+   +    +-.+|+|||+|+||+||.
T Consensus       396 k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe  461 (645)
T KOG0681|consen  396 KLEKLLERISQKKRLKQEL--------------KDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYE  461 (645)
T ss_pred             HHHHHHHHHHHHHHHHHhh--------------hhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHH
Confidence            9999999999999999999              899999999999999999976   1    235888999999999996


Q ss_pred             HhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCC-CCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCC
Q 007811          394 LMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQES-GPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPN  472 (589)
Q Consensus       394 ~i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~-~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Ps  472 (589)
                      ++.       +..+.+...|..|+++|+++||+|++.... .+.  .  -...+-+..+++++++|.||++|||++|+|+
T Consensus       462 ~le-------e~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~--~--~~~~p~~~~e~~qlh~nVEriRvPEIiFqPs  530 (645)
T KOG0681|consen  462 DLE-------EENKSILEDLKSLNHELLEFDPHFTQYVEGTTDP--R--NGVLPGFTAEDYQLHLNVERIRVPEIIFQPS  530 (645)
T ss_pred             Hhh-------hhhhhHHHHHHHHHHHHHhhCcccccccccccCc--c--cCcchhHHHhhhhhhhcceeeccceeeeccc
Confidence            663       334456678999999999999999997411 111  0  0111223577799999999999999999999


Q ss_pred             CCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeec
Q 007811          473 WVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG  552 (589)
Q Consensus       473 l~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~G  552 (589)
                      ++|.|++||.|++..++.++   |.+.+..|.+||+||||+|++||+.+||.+||..+.|.+++|+|+.+.||..+||.|
T Consensus       531 iiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~G  607 (645)
T KOG0681|consen  531 IIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRG  607 (645)
T ss_pred             cccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhh
Confidence            99999999999999999866   999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCccceeHHHHhhhchHHHHHhhcccCC
Q 007811          553 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL  589 (589)
Q Consensus       553 gsilasl~~f~~~wITk~EY~E~G~~iv~~k~~~~~~  589 (589)
                      |+.+|...+|...||||+||+|+|+++++.|+.||+.
T Consensus       608 A~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~  644 (645)
T KOG0681|consen  608 ASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIY  644 (645)
T ss_pred             hHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999863

>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 4e-17
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 5e-17
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 5e-17
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 5e-17
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 5e-17
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 5e-17
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 6e-17
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 6e-17
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 6e-17
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 6e-17
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 6e-17
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 6e-17
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 6e-17
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 7e-17
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 7e-17
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 7e-17
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 7e-17
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 7e-17
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 7e-17
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 7e-17
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 7e-17
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 7e-17
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 7e-17
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 7e-17
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 8e-17
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 8e-17
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 9e-17
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 9e-17
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 9e-17
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 9e-17
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 9e-17
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 2e-16
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 3e-16
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-16
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 3e-16
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 5e-16
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 6e-16
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-15
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-15
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 2e-07
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-06
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-06
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 6e-06
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 455 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 514
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTT 304
Query: 515 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 574
           +FPG+++R+   +  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKHEYDE 364
Query: 575 KGENWLRR 582
            G + + R
Sbjct: 365 SGPSIVHR 372
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 3e-23
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 6e-18
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 3e-22
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 3e-18
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 9e-22
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 4e-20
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 4e-21
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 2e-18
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 4e-19
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 3e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-04
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  100 bits (252), Expect = 3e-23
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 455 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 514
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304

Query: 515 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 574
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364

Query: 575 KGENWLRR 582
            G + + R
Sbjct: 365 AGPSIVHR 372
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.59
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.13
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 98.93
2v7y_A509 Chaperone protein DNAK; HSP70, heat shock protein, 98.72
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 98.58
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 98.24
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 97.82
3d2f_A675 Heat shock protein homolog SSE1; nucleotide exchan 97.52
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 97.03
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 96.36
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 95.87
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 95.83
3js6_A355 Uncharacterized PARM protein; partition, segregati 95.71
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 95.28
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 95.23
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 93.58
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 93.27
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 93.1
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 92.99
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 91.22
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 91.19
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 89.95
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 88.38
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 85.35
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 80.27
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 80.26
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1e-58  Score=509.46  Aligned_cols=136  Identities=27%  Similarity=0.440  Sum_probs=128.8

Q ss_pred             ccccCCCCCeEEEeCce-eccccccCcCCCCCCC----------------------------------------------
Q 007811          444 RVRPLTKEDFQIVLGVE-RFRCPEILFRPNWVGI----------------------------------------------  476 (589)
Q Consensus       444 ~~y~lp~~~~~I~lg~E-Rf~~pE~LF~Psl~g~----------------------------------------------  476 (589)
                      ..|+||+| +.|.||.| ||+|||+||+|+++|.                                              
T Consensus       277 ~~yeLPDG-~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
T 3qb0_A          277 RSIESPWN-EEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQE  355 (498)
T ss_dssp             EEEECSSS-CEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC--------------------
T ss_pred             eEEECCCC-CEEEECchHhhhCchhhCCHhHcCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45788999 99999999 9999999999998865                                              


Q ss_pred             ----------------------------------CCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHH
Q 007811          477 ----------------------------------DQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSER  522 (589)
Q Consensus       477 ----------------------------------~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eR  522 (589)
                                                        +..|||++|.+||+   +||+|+|+.||+|||||||+|+||||.+|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~---~cd~d~r~~L~~nIvLsGGst~~pGf~~R  432 (498)
T 3qb0_A          356 AVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIM---SSDVDLRATLAHNVVLTGGTSSIPGLSDR  432 (498)
T ss_dssp             ---------------------------------CCSCCHHHHHHHHHH---TSCTTTHHHHHTTEEEESGGGGSTTHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCCCchHHHHHHHH---hCCHHHHHHHhcCEEEeCCccCchhHHHH
Confidence                                              56899999999996   67999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCeEEEeC---CCCccceeechhhhcccCCCCccceeHHHHhhhch-HHHHHhh
Q 007811          523 LEAGIRMIRPCGAPIKVVRA---LDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGE-NWLRRYQ  584 (589)
Q Consensus       523 L~~EL~~l~p~~~~v~V~~~---~d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~-~iv~~k~  584 (589)
                      |++||+.++| .++|+|+++   ++|.|++|+||||||++++|+++||||+||+|+|+ .|||+||
T Consensus       433 l~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc  497 (498)
T 3qb0_A          433 LMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF  497 (498)
T ss_dssp             HHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred             HHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence            9999999999 889999988   68999999999999999999999999999999999 8999998
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 589
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-27
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-16
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-17
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 3e-16
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 3e-17
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 5e-14
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 0.002
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 0.002
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (267), Expect = 5e-27
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 382 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELAR-ISARLQEVDPTFVPKQESGPTQSAA 440
              +D    L K+++         +   E E+ R I  +L  V   F  +  +  + S+ 
Sbjct: 34  LAGRDLTDYLMKILTERGYS---FVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 90

Query: 441 EIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDL 499
           E     P    D Q I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+
Sbjct: 91  EKSYELP----DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMK---CDIDI 143

Query: 500 EQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559
            + L ++ +M+GG  ++PG+++R++  I  + P    IK++   +     W G S+ A+ 
Sbjct: 144 RKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203

Query: 560 LQFPQQTFSRMDYYEKGEN 578
             F Q   ++ +Y E G +
Sbjct: 204 STFQQMWITKQEYDEAGPS 222
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 97.1
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 96.96
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 95.53
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 92.5
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 90.24
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 90.12
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 87.86
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 84.91
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 81.62
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-51  Score=404.54  Aligned_cols=133  Identities=31%  Similarity=0.609  Sum_probs=127.6

Q ss_pred             cccCCCCCeEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHH
Q 007811          445 VRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLE  524 (589)
Q Consensus       445 ~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~  524 (589)
                      .|.+|+| +.|.++.|||.+||+||+|+.+|.+..||+++|.+||.   +||+|+|+.|++|||||||+|+||||.+||+
T Consensus        93 ~~~lpdg-~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~---~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~  168 (225)
T d2fxua2          93 SYELPDG-QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM---KCDIDIRKDLYANNVMSGGTTMYPGIADRMQ  168 (225)
T ss_dssp             EEECTTS-CEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHH---TSCHHHHHHHHTCEEEESGGGCSTTHHHHHH
T ss_pred             eEECCCC-CEEEEchHhccccHhhcCccccCCccCChhHHHHHHhh---cCCcchhhhhhcCEEEeCCcccCCchhHHHH
Confidence            3556777 99999999999999999999999999999999999996   6799999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCeEEEeCCCCccceeechhhhcccCCCCccceeHHHHhhhchHHHH
Q 007811          525 AGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLR  581 (589)
Q Consensus       525 ~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~~iv~  581 (589)
                      +||..+.|...+++|+.+++|.|++|+||||||++++|+++||||+||+|+|++|||
T Consensus       169 ~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         169 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             hHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            999999999999999999999999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure