Citrus Sinensis ID: 007824

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCPSFYLQ
ccccccccccccEEEEEcccccHHHHHHHHccccccccEEEEEcccccccEEEEEcHHHHHHcccccccHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHcccccccccEEEccccHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHccHHHHHHHHcccHHHHHHHHHcccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccc
cccccccccccEEEEEEEccHEEEEEEcccccHHccccEEEEccccccccEEEEEcHHHHHccccccccHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEccEEEEEcHHHHHHHHHccccccHHHccHHHEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHccccccccEEEcHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHccHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcEEEcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccHHHHHccccccccccHccccccccccccccccccccHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHcccccccccccccccccEEcc
mpvarpdssgariIAHVDLDCFYVQveqrkqpklrglpTAVVQYNEWKGGGLIAVGYEarnygvkrsmrgdeakevcpqielvqvpvargkadlssyrnaGSEVVSILARkgrcerasidEVYLDLTDAAEAMlaetppesldevDEEALKSHILGleskdgndskATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAsgmnkpaqqttvpfssvkglldslpikkmkqlggklgtslqnelgvtTVGDLLKFSEdklqesygfntgtWLWNIargisgeevqarllpkshgsgksfpgpralKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLhasafkssdsdsrkkfpskscplrygtakiQEDTFNLFQAGLREFLGsfgvktqgshysgwRITALSVsaskivpvlsgTCSImkyfngpdkfgstseqlpdnfidaaplspsgsesystlnstelqnelpgeqvwIEHSMADLGQLEMkantwngldpscsiskqtsgqwfhsgtessssldqnkpqnrddsrmrsvpiksnqqehKKSAlkdkvhscpsfylq
mpvarpdssgariiAHVDLDCFYVQVEqrkqpklrglpTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVArgkadlssyrnagsevvsilarkgrcerasIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIlgleskdgndskATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLhasafkssdsdsrkkfpskscplrygTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSgtessssldqnkpqnrddsrmrsvpiksnqqehkksalkdkvhscpsfylq
MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHasafkssdsdsrkkfpsksCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCPSFYLQ
***********RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA*************************************TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL*****************VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV********************LKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL*********************PLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP********************************************VWIEHSMADLGQLEMKANTWNG*********************************************************************
**************AHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE*************KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD*********CPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSA****************************************************************************************************************************************************CPSFYLQ
*********GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS********TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA**************KSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS**************LQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSIS******************************MRSVPI***************VHSCPSFYLQ
*********GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESK******ATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI****************************************************************************************************************************VP**************************
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MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKVHSCPSFYLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query588 2.2.26 [Sep-21-2011]
Q9Y253 713 DNA polymerase eta OS=Hom yes no 0.658 0.542 0.437 6e-87
Q9JJN0 694 DNA polymerase eta OS=Mus yes no 0.717 0.608 0.405 1e-80
O42917 872 N-acetyltransferase eso1 yes no 0.576 0.388 0.294 1e-34
Q6R3M4 717 DNA polymerase iota OS=Mu no no 0.573 0.470 0.305 1e-31
Q9UNA4 740 DNA polymerase iota OS=Ho no no 0.576 0.458 0.301 2e-31
A3EWL3 1105 DNA repair protein REV1 O no no 0.591 0.314 0.283 5e-29
Q1RFU0351 DNA polymerase IV OS=Esch yes no 0.460 0.772 0.290 9e-29
Q0TL85351 DNA polymerase IV OS=Esch yes no 0.460 0.772 0.290 9e-29
A1A7U2351 DNA polymerase IV OS=Esch yes no 0.460 0.772 0.290 9e-29
Q3Z5A4351 DNA polymerase IV OS=Shig yes no 0.460 0.772 0.290 1e-28
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)

Query: 12  RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
           R++A VD+DCF+VQVEQR+ P LR  P AVVQY  WKGGG+IAV YEAR +GV RSM  D
Sbjct: 7   RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66

Query: 72  EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
           +AK++CP + L QV  +RGKA+L+ YR A  EV+ I++R    ERASIDE Y+DLT A +
Sbjct: 67  DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126

Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH---R 181
             L   +  P S D +    ++    G  + +    K  ++     +WL     D+    
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186

Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
           D  L  G +IV E+R  + +ET F CSAGI+HNK+LAKLA G+NKP +QT V   SV  L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246

Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
              +PI+K++ LGGKLG S+   LG+  +G+L +F+E +LQ  +G   G+WL+ + RGI 
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306

Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
            + V+ R LPK+ G  K+FPG  AL T   VQ WL QL +EL ERL  D   N R+A  L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366

Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
            +          D R     + C L RY   K+  D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Plays an important role in the repair of UV-induced pyrimidine dimers. Depending on the context, it inserts the correct base, but causes frequent base transitions and transversions. May play a role in hypermutation at immunoglobulin genes. Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but does not have lyase activity. Targets POLI to replication foci.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1 Back     alignment and function description
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eso1 PE=1 SV=1 Back     alignment and function description
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1 Back     alignment and function description
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3 Back     alignment and function description
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1 Back     alignment and function description
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB PE=3 SV=1 Back     alignment and function description
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dinB PE=3 SV=1 Back     alignment and function description
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3 SV=1 Back     alignment and function description
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
297738026 773 unnamed protein product [Vitis vinifera] 0.877 0.667 0.772 0.0
359472774 779 PREDICTED: DNA polymerase eta [Vitis vin 0.877 0.662 0.763 0.0
30694599672 DNA polymerase eta subunit [Arabidopsis 0.857 0.75 0.730 0.0
449526991557 PREDICTED: DNA polymerase eta-like [Cucu 0.897 0.947 0.705 0.0
297791325672 hypothetical protein ARALYDRAFT_494508 [ 0.874 0.764 0.714 0.0
23953869672 putative translesion synthesis polymeras 0.857 0.75 0.726 0.0
358348538543 DNA polymerase eta [Medicago truncatula] 0.879 0.952 0.733 0.0
2660675 689 similar to DNA-damage-inducible protein 0.857 0.731 0.706 0.0
255574476560 DNA polymerase eta, putative [Ricinus co 0.758 0.796 0.774 0.0
356528144 703 PREDICTED: DNA polymerase eta-like [Glyc 0.886 0.741 0.703 0.0
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/518 (77%), Positives = 445/518 (85%), Gaps = 2/518 (0%)

Query: 1   MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
           MPVA+P+SS ARIIAH+D+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAV YEAR
Sbjct: 1   MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60

Query: 61  NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
            +GVKRSMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASID
Sbjct: 61  KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120

Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
           EVYLDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR  ADH
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADH 179

Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
           RDKLLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+G
Sbjct: 180 RDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRG 239

Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
           LL SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGI
Sbjct: 240 LLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGI 299

Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
           SGEEV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHT
Sbjct: 300 SGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHT 359

Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
           LTLHA A+KS+DSDS KKFPSKSCPLRYG AKIQED  NLFQAGLRE+LGS  VKT+ + 
Sbjct: 360 LTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQ 419

Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSE 479
            SGW ITALSVSASKIV + +GTCSIMKYF+G D   S+ +Q  D    +AA LS SGSE
Sbjct: 420 CSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSE 479

Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTW 517
           SY  LN  E Q + PGE+  I + M +L Q E K   W
Sbjct: 480 SYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMW 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera] Back     alignment and taxonomy information
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana] gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana] gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp. lyrata] gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula] gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula] Back     alignment and taxonomy information
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana] gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis] gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
TAIR|locus:2156309672 POLH "Y-family DNA polymerase 0.950 0.831 0.641 3e-188
ZFIN|ZDB-GENE-060421-4949 749 polh "polymerase (DNA directed 0.744 0.584 0.408 1e-84
UNIPROTKB|F1NAG6 686 POLH "Uncharacterized protein" 0.687 0.588 0.438 2e-81
UNIPROTKB|F1NCM3657 POLH "Uncharacterized protein" 0.687 0.614 0.438 2e-81
UNIPROTKB|E2RC81 712 POLH "Uncharacterized protein" 0.741 0.612 0.410 1.8e-80
UNIPROTKB|Q9Y253 713 POLH "DNA polymerase eta" [Hom 0.658 0.542 0.432 2.2e-80
UNIPROTKB|F1RRJ6 698 POLH "Uncharacterized protein" 0.719 0.606 0.392 2.8e-78
RGD|1309893 689 Polh "polymerase (DNA directed 0.780 0.666 0.394 6.2e-78
MGI|MGI:1891457 694 Polh "polymerase (DNA directed 0.782 0.662 0.391 1e-77
UNIPROTKB|F1MZ79 710 POLH "Uncharacterized protein" 0.596 0.494 0.444 3.1e-74
TAIR|locus:2156309 POLH "Y-family DNA polymerase H" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
 Identities = 362/564 (64%), Positives = 425/564 (75%)

Query:     1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
             MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct:     1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60

Query:    61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
               GVKRSMRGDEAK  CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct:    61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120

Query:   121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
             EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+  +DG+D K +V+ W+CR DAD 
Sbjct:   121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180

Query:   181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
             RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ 
Sbjct:   181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240

Query:   241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
             LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct:   241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300

Query:   301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
             SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct:   301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360

Query:   361 LTLHXXXXXXXXXXXXXXXXXXXCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
             LTLH                   CP+RYG  KIQED FNLFQA LRE++GSFG+K QG+ 
Sbjct:   361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420

Query:   421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSE 479
                WRIT LSVSASKIV + SGT SIM+YF       S S    D  +     ++ S SE
Sbjct:   421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSA---DGCVQGNVAMTASASE 477

Query:   480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP-SCSISKQTSGQWFHSG 538
               S   STE Q  +P     + +++ +    +   +  +  D  SC  ++ T        
Sbjct:   478 GCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVSTQSES 537

Query:   539 TESSSSLDQNKPQNRDDSRMRSVP 562
              + + +    +  N    + R +P
Sbjct:   538 NKGTQTKKIGRKMNNSKEKNRGMP 561
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010224 "response to UV-B" evidence=IMP
GO:0042276 "error-prone translesion synthesis" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0042732 "D-xylose metabolic process" evidence=RCA
ZFIN|ZDB-GENE-060421-4949 polh "polymerase (DNA directed), eta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAG6 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCM3 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RC81 POLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y253 POLH "DNA polymerase eta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RRJ6 POLH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309893 Polh "polymerase (DNA directed), eta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1891457 Polh "polymerase (DNA directed), eta (RAD 30 related)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZ79 POLH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.766
4th Layer2.7.7.70.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
cd01702359 cd01702, PolY_Pol_eta, DNA Polymerase eta 1e-116
cd03586334 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp 8e-68
COG0389354 COG0389, DinP, Nucleotidyltransferase/DNA polymera 6e-55
cd00424343 cd00424, PolY, Y-family of DNA polymerases 3e-52
PRK02406343 PRK02406, PRK02406, DNA polymerase IV; Validated 1e-43
pfam00817148 pfam00817, IMS, impB/mucB/samB family 4e-39
cd01703379 cd01703, PolY_Pol_iota, DNA Polymerase iota 6e-39
cd01701404 cd01701, PolY_Rev1, DNA polymerase Rev1 1e-36
PRK14133347 PRK14133, PRK14133, DNA polymerase IV; Provisional 5e-35
PRK01810407 PRK01810, PRK01810, DNA polymerase IV; Validated 1e-34
PRK03348454 PRK03348, PRK03348, DNA polymerase IV; Provisional 1e-32
PRK03103409 PRK03103, PRK03103, DNA polymerase IV; Reviewed 5e-28
PRK03858396 PRK03858, PRK03858, DNA polymerase IV; Validated 1e-25
PRK01216351 PRK01216, PRK01216, DNA polymerase IV; Validated 4e-25
PRK03352346 PRK03352, PRK03352, DNA polymerase IV; Validated 4e-24
cd01700344 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly 1e-23
PRK02794419 PRK02794, PRK02794, DNA polymerase IV; Provisional 6e-21
pfam11799136 pfam11799, IMS_C, impB/mucB/samB family C-terminal 2e-16
PTZ00205571 PTZ00205, PTZ00205, DNA polymerase kappa; Provisio 3e-10
cd03468335 cd03468, PolY_like, DNA Polymerase Y-family 5e-10
PRK03609422 PRK03609, umuC, DNA polymerase V subunit UmuC; Rev 2e-06
>gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta Back     alignment and domain information 
 Score =  348 bits (895), Expect = e-116
 Identities = 164/425 (38%), Positives = 204/425 (48%), Gaps = 70/425 (16%)

Query: 15  AHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAK 74
           AH+D+D F+ QVEQ +   LR  P AVVQ+N      +IAV Y AR +GV R M  DEAK
Sbjct: 1   AHIDMDAFFAQVEQVRLGLLRNDPVAVVQWN-----SIIAVSYAARAFGVTRFMTIDEAK 55

Query: 75  EVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML 134
           + CP + L  V           Y+    E                        D  E   
Sbjct: 56  KKCPDLILAHVAT---------YKKGEDE-----------------------ADYHENPS 83

Query: 135 AETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLLACGVLIVT 193
                 SLD     + K  IL +  + G+   KA++ E             L  G  IV 
Sbjct: 84  PARHKVSLDPYRRASRK--ILNILKRFGDVVEKASIDE-----------AYLDLGSRIVE 130

Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
           E+R QV  E  +TCSAGIAHNKMLAKLASGMNKP  QT +   +V   L SLPI  ++ L
Sbjct: 131 EIRQQVYDELGYTCSAGIAHNKMLAKLASGMNKPNAQTILRNDAVASFLSSLPITSIRGL 190

Query: 254 GGKLGTSLQNELGVTTVGDLLKF--SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
           GGKLG  + + LG+ T GD+  F  SE  LQE +G   G WL+N+ RGI  E V+ R LP
Sbjct: 191 GGKLGEEIIDLLGLPTEGDVAGFRSSESDLQEHFGEKLGEWLYNLLRGIDHEPVKPRPLP 250

Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
           KS GS K+FPG  AL T   VQHWL  L  EL+ RL  D  +N R   TL L        
Sbjct: 251 KSMGSSKNFPGKTALSTE-DVQHWLLVLASELNSRLEDDRYENNRRPKTLVLSLRQRGDG 309

Query: 372 DSDSRKKFPSKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 430
                    S+SC L    A KI +D F L +A   E LG             + +T LS
Sbjct: 310 ------VRRSRSCALPRYDAQKIVKDAFKLIKAINEEGLGLAWN---------YPLTLLS 354

Query: 431 VSASK 435
           +S +K
Sbjct: 355 LSFTK 359

Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA. Length = 359
>gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa Back     alignment and domain information
>gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases Back     alignment and domain information
>gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated Back     alignment and domain information
>gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family Back     alignment and domain information
>gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota Back     alignment and domain information
>gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 Back     alignment and domain information
>gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional Back     alignment and domain information
>gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated Back     alignment and domain information
>gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional Back     alignment and domain information
>gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed Back     alignment and domain information
>gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated Back     alignment and domain information
>gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated Back     alignment and domain information
>gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated Back     alignment and domain information
>gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V Back     alignment and domain information
>gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional Back     alignment and domain information
>gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal Back     alignment and domain information
>gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional Back     alignment and domain information
>gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family Back     alignment and domain information
>gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 588
PRK03609422 umuC DNA polymerase V subunit UmuC; Reviewed 100.0
KOG2095656 consensus DNA polymerase iota/DNA damage inducible 100.0
cd01701404 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi 100.0
cd01702359 PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal 100.0
PTZ00205571 DNA polymerase kappa; Provisional 100.0
PRK01216351 DNA polymerase IV; Validated 100.0
PRK01810407 DNA polymerase IV; Validated 100.0
cd00424343 PolY Y-family of DNA polymerases. Y-family DNA pol 100.0
cd01703379 PolY_Pol_iota DNA Polymerase iota. Pol iota, also 100.0
PRK14133347 DNA polymerase IV; Provisional 100.0
PRK03858396 DNA polymerase IV; Validated 100.0
PRK03103409 DNA polymerase IV; Reviewed 100.0
PRK02794419 DNA polymerase IV; Provisional 100.0
PRK03348454 DNA polymerase IV; Provisional 100.0
PRK03352346 DNA polymerase IV; Validated 100.0
cd03586334 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, 100.0
cd01700344 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. 100.0
PRK02406343 DNA polymerase IV; Validated 100.0
COG0389354 DinP Nucleotidyltransferase/DNA polymerase involve 100.0
KOG2094490 consensus Predicted DNA damage inducible protein [ 100.0
cd03468335 PolY_like DNA Polymerase Y-family. Y-family DNA po 100.0
KOG2093 1016 consensus Translesion DNA polymerase - REV1 deoxyc 100.0
PF00817149 IMS: impB/mucB/samB family; InterPro: IPR001126 In 100.0
PF11799127 IMS_C: impB/mucB/samB family C-terminal domain; In 99.22
PF1343852 DUF4113: Domain of unknown function (DUF4113) 98.92
PF1179832 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 98.44
PRK04301317 radA DNA repair and recombination protein RadA; Va 97.73
TIGR02236310 recomb_radA DNA repair and recombination protein R 97.04
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 96.47
PF1173193 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd 95.92
PF0882759 DUF1805: Domain of unknown function (DUF1805); Int 93.59
PRK12766232 50S ribosomal protein L32e; Provisional 93.38
PF1039152 DNA_pol_lambd_f: Fingers domain of DNA polymerase 93.14
COG3743133 Uncharacterized conserved protein [Function unknow 92.57
PF0311866 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha 89.97
PF14229122 DUF4332: Domain of unknown function (DUF4332) 89.8
PF0499481 TfoX_C: TfoX C-terminal domain; InterPro: IPR00707 89.45
PRK02362737 ski2-like helicase; Provisional 89.2
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 84.4
COG2251474 Predicted nuclease (RecB family) [General function 83.35
PF14229122 DUF4332: Domain of unknown function (DUF4332) 82.31
PRK01172674 ski2-like helicase; Provisional 81.73
PRK0775895 hypothetical protein; Provisional 80.45
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=7.2e-77  Score=644.85  Aligned_cols=388  Identities=22%  Similarity=0.253  Sum_probs=333.1

Q ss_pred             EEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCC--CcEEEEccCCCC
Q 007824           13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP--QIELVQVPVARG   90 (588)
Q Consensus        13 ~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP--~L~~v~v~~~~~   90 (588)
                      +|+||||||||||||+++||+|+|+||||++++   +|+|+|+||+||++||++|||+++|+++||  ++++++      
T Consensus         1 ~~~hvD~d~FfaS~E~~~~p~l~g~Pv~V~~~~---~g~V~aasyeAr~~GV~~gmp~~~a~~l~~~~~l~~~~------   71 (422)
T PRK03609          1 MFALCDVNSFYASCETVFRPDLRGKPVVVLSNN---DGCVIARSAEAKALGIKMGDPWFKQKDLFRRCGVVCFS------   71 (422)
T ss_pred             CEEEEecCcceeeeeeccCccccCCcEEEEECC---CcEEEEcCHHHHHhCCCCCCcHHHHHHHhccCCeEEeC------
Confidence            599999999999999999999999999999865   489999999999999999999999999994  377763      


Q ss_pred             CCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhhh
Q 007824           91 KADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV  169 (588)
Q Consensus        91 ~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  169 (588)
                       +|++.|.++|++|++++.+| |.||++||||+|||+|++.+                      +++             
T Consensus        72 -~d~~~y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~----------------------l~~-------------  115 (422)
T PRK03609         72 -SNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN----------------------CRD-------------  115 (422)
T ss_pred             -CCHHHHHHHHHHHHHHHHHhCCCceEeccccceecCCCCcC----------------------CCC-------------
Confidence             89999999999999999998 89999999999999999752                      111             


Q ss_pred             hhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCC-----CCcccc-CccCHHHhcc
Q 007824          170 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-----AQQTTV-PFSSVKGLLD  243 (588)
Q Consensus       170 ~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP-----~g~~vv-~~~~~~~~L~  243 (588)
                                        ...++++||++|++++||+||||||+||++|||||.++||     +|..++ .+++..+||+
T Consensus       116 ------------------~~~~a~~i~~~I~~~~gl~~siGia~n~~lAK~As~~~k~~~k~~~g~~~i~~~~~~~~~L~  177 (422)
T PRK03609        116 ------------------LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLLS  177 (422)
T ss_pred             ------------------HHHHHHHHHHHHHHHHCCceEEEecCCHHHHHHHHHHhCCCCCCCCcEEEcCCHHHHHHHhh
Confidence                              1357999999999999999999999999999999988776     566666 5778999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCC-cccccccccCC
Q 007824          244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP-KSHGSGKSFPG  322 (588)
Q Consensus       244 ~lPI~~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~p-Ksi~~s~sF~~  322 (588)
                      ++||++|||||+++.++|. .+||+|+|||+++|+..|+++||+ .|..+++.++|+++.++....++ |+|+.++||+.
T Consensus       178 ~lPv~~l~GiG~~~~~~L~-~lGi~TigdL~~~~~~~L~~~fG~-~~~~l~~~a~G~~~~~~~~~~~~~ksi~~~~tf~~  255 (422)
T PRK03609        178 LQPVEEVWGVGRRISKKLN-AMGIKTALDLADTNIRFIRKHFNV-VLERTVRELRGEPCLSLEEFAPTKQEIVCSRSFGE  255 (422)
T ss_pred             cCChhhcCCccHHHHHHHH-HcCCCcHHHHhcCCHHHHHHHHCH-HHHHHHHHhCCCCCCCccccCCCCceEEEeeECCC
Confidence            9999999999999999998 899999999999999999999997 59999999999999999876665 69999999985


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCch---hHHHHHHH
Q 007824          323 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA---KIQEDTFN  399 (588)
Q Consensus       323 ~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T~---~i~~~A~~  399 (588)
                        ++.+.+++..++.+|+++|+.||+++    ++.|++|+|++++.+|... .+.|..+++.+++.||+   .|++.+.+
T Consensus       256 --~~~~~~~l~~~l~~l~~~l~~rLr~~----~~~~~~l~l~ir~~~~~~~-~~~~~~~~~~~l~~pt~d~~~l~~~a~~  328 (422)
T PRK03609        256 --RITDYESMRQAICSYAARAAEKLRGE----HQYCRFISTFVKTSPFALN-EPYYGNSASVKLLTPTQDSRDIIAAATR  328 (422)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHc----CCcccEEEEEEEcCCcccc-CCCcCceeEEeCCCCCCCHHHHHHHHHH
Confidence              49999999999999999999999987    9999999999999887531 22344567777887876   57888888


Q ss_pred             HHHHHHHHhhccccccccCCCCCCCceeEEeeccCCcc----------cCC---ccchhhhhhh--------cCCCCCCC
Q 007824          400 LFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV----------PVL---SGTCSIMKYF--------NGPDKFGS  458 (588)
Q Consensus       400 Ll~~i~r~~~~~~~y~kaGv~~~~~~Ir~lgvs~s~L~----------~~~---~~~~sLm~~f--------~~~~~~~~  458 (588)
                      +|+++|+.               +.+++.+||.+++|.          +..   .+...|+.++        .+.+..|+
T Consensus       329 ll~~~~~~---------------~~~~r~~GV~~~~l~~~~~~q~~LF~~~~~~~~~~~l~~~iD~i~~r~G~~~i~~a~  393 (422)
T PRK03609        329 ALDAIWRD---------------GHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMKVLDTLNAKSGKGTLYFAG  393 (422)
T ss_pred             HHHHHhCC---------------CCceEEeeEEEEeeccCCCcCccCccccccccchHHHHHHHHHHHHhhCCCeEEECC
Confidence            98886543               125666666665554          321   1234566665        56788888


Q ss_pred             CCCCCCCcccccCCCCCCcccccCcCcchh
Q 007824          459 TSEQLPDNFIDAAPLSPSGSESYSTLNSTE  488 (588)
Q Consensus       459 ~~~~~~~w~m~~~~~SP~ytT~w~~Lp~~~  488 (588)
                      ++..+ +|.|+++++||+|||+|+|||.++
T Consensus       394 ~~~~~-~w~~~~~~~s~~ytt~~~~l~~~~  422 (422)
T PRK03609        394 QGIAQ-QWQMKREMLSPRYTTRWSDLLRVK  422 (422)
T ss_pred             CCCCC-CccCchhhcCCCCCCCHHHcceeC
Confidence            88865 799999999999999999999874

>KOG2095 consensus DNA polymerase iota/DNA damage inducible protein [Replication, recombination and repair] Back     alignment and domain information
>cd01701 PolY_Rev1 DNA polymerase Rev1 Back     alignment and domain information
>cd01702 PolY_Pol_eta DNA Polymerase eta Back     alignment and domain information
>PTZ00205 DNA polymerase kappa; Provisional Back     alignment and domain information
>PRK01216 DNA polymerase IV; Validated Back     alignment and domain information
>PRK01810 DNA polymerase IV; Validated Back     alignment and domain information
>cd00424 PolY Y-family of DNA polymerases Back     alignment and domain information
>cd01703 PolY_Pol_iota DNA Polymerase iota Back     alignment and domain information
>PRK14133 DNA polymerase IV; Provisional Back     alignment and domain information
>PRK03858 DNA polymerase IV; Validated Back     alignment and domain information
>PRK03103 DNA polymerase IV; Reviewed Back     alignment and domain information
>PRK02794 DNA polymerase IV; Provisional Back     alignment and domain information
>PRK03348 DNA polymerase IV; Provisional Back     alignment and domain information
>PRK03352 DNA polymerase IV; Validated Back     alignment and domain information
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa Back     alignment and domain information
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V Back     alignment and domain information
>PRK02406 DNA polymerase IV; Validated Back     alignment and domain information
>COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair] Back     alignment and domain information
>cd03468 PolY_like DNA Polymerase Y-family Back     alignment and domain information
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] Back     alignment and domain information
>PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA Back     alignment and domain information
>PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases Back     alignment and domain information
>PF13438 DUF4113: Domain of unknown function (DUF4113) Back     alignment and domain information
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] Back     alignment and domain information
>PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets Back     alignment and domain information
>PRK12766 50S ribosomal protein L32e; Provisional Back     alignment and domain information
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains Back     alignment and domain information
>COG3743 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals Back     alignment and domain information
>PF14229 DUF4332: Domain of unknown function (DUF4332) Back     alignment and domain information
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>COG2251 Predicted nuclease (RecB family) [General function prediction only] Back     alignment and domain information
>PF14229 DUF4332: Domain of unknown function (DUF4332) Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK07758 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
3mr6_A435 Human Dna Polymerase Eta - Dna Ternary Complex With 2e-85
3mr2_A435 Human Dna Polymerase Eta In Complex With Normal Dna 2e-85
2dpi_A420 Ternary Complex Of Hpoli With Dna And Dctp Length = 2e-30
2alz_A390 Ternary Complex Of Hpoli With Dna And Dctp Length = 3e-30
3h40_A389 Binary Complex Of Human Dna Polymerase Iota With Te 3e-30
1t3n_A388 Structure Of The Catalytic Core Of Dna Polymerase I 4e-30
3gv5_B420 Human Dna Polymerase Iota In Complex With T Templat 4e-29
1t94_A459 Crystal Structure Of The Catalytic Core Of Human Dn 7e-23
2oh2_A508 Ternary Complex Of Human Dna Polymerase Length = 50 8e-23
3pzp_A517 Human Dna Polymerase Kappa Extending Opposite A Cis 1e-22
2uvr_A358 Crystal Structures Of Mutant Dpo4 Dna Polymerases W 9e-20
2uvv_A358 Crystal Structures Of Mutant Dpo4 Dna Polymerases W 1e-19
2rdi_A342 Snapshots Of A Y-family Dna Polymerase In Replicati 1e-19
2bq3_A358 Dna Adduct Bypass Polymerization By Sulfolobus Solf 1e-19
1jxl_A352 Crystal Structure Of A Y-Family Dna Polymerase In A 1e-19
4gc7_A359 Crystal Structure Of Dpo4 In Complex With S-mc-dadp 1e-19
2asd_A360 Oxog-Modified Insertion Ternary Complex Length = 36 1e-19
2w9b_A358 Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo 1e-19
2imw_P348 Mechanism Of Template-Independent Nucleotide Incorp 1e-19
3v6h_A348 Replication Of N2,3-Ethenoguanine By Dna Polymerase 1e-19
3qz7_A360 T-3 Ternary Complex Of Dpo4 Length = 360 1e-19
3v6k_A347 Replication Of N2,3-Ethenoguanine By Dna Polymerase 1e-19
2ago_A341 Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide 1e-19
3pvx_A347 Binary Complex Of Aflatoxin B1 Adduct Modified Dna 1e-19
3gii_A341 Dpo4 Extension Ternary Complex With Disordered A Op 1e-19
4f4z_B361 Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt 2e-19
1jih_A513 Yeast Dna Polymerase Eta Length = 513 6e-19
2r8j_A554 Structure Of The Eukaryotic Dna Polymerase Eta In C 6e-19
3mfh_A520 Dna Polymerase Eta In Complex With Undamaged Dna Le 6e-19
2wtf_A536 Dna Polymerase Eta In Complex With The Cis-Diammine 7e-19
1jx4_A352 Crystal Structure Of A Y-Family Dna Polymerase In A 1e-18
3pr4_A341 Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa 2e-18
4f4w_A361 Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Le 1e-17
4f4y_A362 Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length 2e-17
3bq0_A354 Pre-insertion Binary Complex Of Dbh Dna Polymerase 5e-17
4f50_A361 Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length 6e-17
1k1q_A354 Crystal Structure Of A Dinb Family Error Prone Dna 7e-17
3gqc_A504 Structure Of Human Rev1-Dna-Dntp Ternary Complex Le 5e-16
4dez_A356 Structure Of Msdpo4 Length = 356 7e-16
1im4_A221 Crystal Structure Of A Dinb Homolog (Dbh) Lesion By 4e-15
>pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 Back     alignment and structure 
Iteration: 1

 Score =  313 bits (802), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/419 (42%), Positives = 244/419 (58%), Gaps = 20/419 (4%)
Query: 12  RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
           R++A VD+DCF+VQVEQR+ P LR  P AVVQY  WKGGG+IAV YEAR +GV RSM  D
Sbjct: 10  RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 69
Query: 72  EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
           +AK++CP + L QV  +RGKA+L+ YR A  EV+ I++R    ERASIDE Y+DLT A +
Sbjct: 70  DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 129
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
             L   +  P S D +    ++    G  + +    K  ++     +WL     D+    
Sbjct: 130 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 189
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
           D  L  G +IV E+R  + +ET F CSAGI+HNK+LAKLA G+NKP +QT V   SV  L
Sbjct: 190 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 249
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
              +PI+K++ LGGKLG S+   LG+  +G+L +F+E +LQ  +G   G+WL+ + RGI 
Sbjct: 250 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 309
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
            + V+ R LPK+ G  K+FPG  AL T   VQ WL QL +EL ERL  D   N R+A  L
Sbjct: 310 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 369
Query: 362 TLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
            +                    C L RY   K+  D F + +      + + G++T+ S
Sbjct: 370 VV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----MNTSGIQTEWS 419
>pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 Back     alignment and structure
>pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 420 Back     alignment and structure
>pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 390 Back     alignment and structure
>pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template UT Length = 389 Back     alignment and structure
>pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In Complex With Dna And Dttp Length = 388 Back     alignment and structure
>pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna And Incoming Ddadp Length = 420 Back     alignment and structure
>pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna Polymerase Kappa Length = 459 Back     alignment and structure
>pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 Back     alignment and structure
>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 Back     alignment and structure
>pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 Back     alignment and structure
>pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 Back     alignment and structure
>pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 Back     alignment and structure
>pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 Back     alignment and structure
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 Back     alignment and structure
>pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 Back     alignment and structure
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 Back     alignment and structure
>pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 Back     alignment and structure
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 Back     alignment and structure
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 Back     alignment and structure
>pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 Back     alignment and structure
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 Back     alignment and structure
>pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 Back     alignment and structure
>pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 Back     alignment and structure
>pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 Back     alignment and structure
>pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 Back     alignment and structure
>pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta Length = 513 Back     alignment and structure
>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex With 1,2- D(gpg)-cisplatin Containing Dna Length = 554 Back     alignment and structure
>pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna Length = 520 Back     alignment and structure
>pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link Length = 536 Back     alignment and structure
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 Back     alignment and structure
>pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 Back     alignment and structure
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Length = 361 Back     alignment and structure
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length = 362 Back     alignment and structure
>pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase Length = 354 Back     alignment and structure
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length = 361 Back     alignment and structure
>pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna Polymerase From Sulfolobus Solfataricus Length = 354 Back     alignment and structure
>pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex Length = 504 Back     alignment and structure
>pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 Back     alignment and structure
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
3osn_A420 DNA polymerase IOTA; hoogsteen base PAIR, protein- 1e-134
4ecq_A435 DNA polymerase ETA; transferase-DNA complex; HET: 1e-134
3mfi_A520 DNA polymerase ETA; DNA damage, DNA repair, DNA re 1e-103
1t94_A459 Polymerase (DNA directed) kappa; replication, DNA 1e-79
3pzp_A517 DNA polymerase kappa; DNA nucleotidyltransferase, 4e-73
1jx4_A352 DNA polymerase IV (family Y); protein-DNA complex, 4e-66
3bq0_A354 POL IV, DBH, DNA polymerase IV; Y-family, lesion b 2e-64
2aq4_A434 DNA repair protein REV1; polymerase, PAD, N-digit, 4e-58
3gqc_A504 DNA repair protein REV1; protein-DNA complex, DNA 2e-54
1im4_A221 DBH; DNA polymerase PALM, thumb, fingers, helix-ha 8e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-134
 Identities = 118/445 (26%), Positives = 183/445 (41%), Gaps = 48/445 (10%)

Query: 1   MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
           +P     S   R+I HVDLDCFY QVE    P+L+  P  V Q        ++   YEAR
Sbjct: 20  LPTPNASS---RVIVHVDLDCFYAQVEMISNPELKDKPLGVQQK-----YLVVTCNYEAR 71

Query: 61  NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASI 119
             GVK+ M   +AKE CPQ+ LV         DL+ YR    +V  +L       ER   
Sbjct: 72  KLGVKKLMNVRDAKEKCPQLVLVNGE------DLTRYREMSYKVTELLEEFSPVVERLGF 125

Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
           DE ++DLT+  E  L +   + L                          V         D
Sbjct: 126 DENFVDLTEMVEKRLQQLQSDELS------------------AVTVSGHVYNNQSINLLD 167

Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
                L  G  I  E+R  +  +   T  AG+A NK+LAKL SG+ KP QQT +   S +
Sbjct: 168 VLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQ 227

Query: 240 GLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
            L+ SL  IK++  +G K    L+  LG+ +V DL  FS   L++  G +    +  ++ 
Sbjct: 228 HLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSF 286

Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
           G     V     P+S     SF       +    ++ + +L   L  R    + Q+ R  
Sbjct: 287 GEDNSPVILSGPPQSFSEEDSFKK---CSSEVEAKNKIEELLASLLNR----VCQDGRKP 339

Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQ 417
           HT+ L     +   S+      S+ CP+  +   K+    +++    +   +  F  +  
Sbjct: 340 HTVRLI---IRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLF--RNM 394

Query: 418 GSHYSGWRITALSVSASKIVPVLSG 442
            +    + +T LSV    +  + + 
Sbjct: 395 VNVKMPFHLTLLSVCFCNLKALNTA 419
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 Back     alignment and structure
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 Back     alignment and structure
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 Back     alignment and structure
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 Back     alignment and structure
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 Back     alignment and structure
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 Back     alignment and structure
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 Back     alignment and structure
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 Back     alignment and structure
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
4ecq_A435 DNA polymerase ETA; transferase-DNA complex; HET: 100.0
4dez_A356 POL IV 1, DNA polymerase IV 1; Y-family, transfera 100.0
3osn_A420 DNA polymerase IOTA; hoogsteen base PAIR, protein- 100.0
1jx4_A352 DNA polymerase IV (family Y); protein-DNA complex, 100.0
3bq0_A354 POL IV, DBH, DNA polymerase IV; Y-family, lesion b 100.0
4f4y_A362 POL IV, DNA polymerase IV; Y-family polymerase, tr 100.0
3mfi_A520 DNA polymerase ETA; DNA damage, DNA repair, DNA re 100.0
3gqc_A504 DNA repair protein REV1; protein-DNA complex, DNA 100.0
3pzp_A517 DNA polymerase kappa; DNA nucleotidyltransferase, 100.0
1t94_A459 Polymerase (DNA directed) kappa; replication, DNA 100.0
2aq4_A434 DNA repair protein REV1; polymerase, PAD, N-digit, 100.0
1im4_A221 DBH; DNA polymerase PALM, thumb, fingers, helix-ha 100.0
1unn_C115 POL IV, DNA polymerase IV; beta-clamp, translesion 98.87
1wcn_A70 Transcription elongation protein NUSA; RNA-binding 95.43
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 95.34
3bqs_A93 Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s 93.4
3mab_A93 Uncharacterized protein; NYSGXRC, PSI-2, structura 92.84
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 92.55
1z3e_B73 DNA-directed RNA polymerase alpha chain; bacterial 91.91
1b22_A114 DNA repair protein RAD51; DNA binding, riken struc 91.62
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 89.34
1qw2_A102 Conserved hypothetical protein TA1206; structural 89.04
3gfk_B79 DNA-directed RNA polymerase subunit alpha; protein 88.59
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 88.07
3k4g_A86 DNA-directed RNA polymerase subunit alpha; bacteri 88.02
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 87.17
2kz3_A83 Putative uncharacterized protein RAD51L3; RAD51D, 84.27
1vq8_Y241 50S ribosomal protein L32E; ribosome 50S, protein- 84.16
1ci4_A89 Protein (barrier-TO-autointegration factor (BAF) ) 83.91
2nrt_A220 Uvrabc system protein C; UVRC, endonuclease, RNAse 83.11
1coo_A98 RNA polymerase alpha subunit; transcription regula 82.22
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 81.73
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Back     alignment and structure
Probab=100.00  E-value=3.3e-78  Score=655.29  Aligned_cols=412  Identities=43%  Similarity=0.705  Sum_probs=337.5

Q ss_pred             CCCCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCC
Q 007824            9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA   88 (588)
Q Consensus         9 ~~~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~   88 (588)
                      .+.|+|+||||||||||||++++|+|+++||||++++.+++|+|+||||+||++||++||++.+|+++||++++++++..
T Consensus         7 ~~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~   86 (435)
T 4ecq_A            7 GQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRES   86 (435)
T ss_dssp             SCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEE
T ss_pred             CCCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEeccccc
Confidence            56799999999999999999999999999999999876667999999999999999999999999999999999987655


Q ss_pred             CCCCChHHHHHHHHHHHHHHhhcCCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhh-hhcccCccC----CCC
Q 007824           89 RGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK-SHILGLESK----DGN  163 (588)
Q Consensus        89 ~~~~d~~~Y~~~S~~v~~iL~~~~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~-~~l~g~~~~----~~~  163 (588)
                      ++++||+.|+++|++|++||.+|..||+|||||+|||||++....+.+......   +..... +++-|.+..    .+.
T Consensus        87 ~~~~~~~~Y~~~S~~i~~il~~~~~vE~~SiDEafLDlT~~~~~~l~~l~g~~~---~~~~~~~~~~~g~~~~~~~~~~~  163 (435)
T 4ecq_A           87 RGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPI---SADLLPSTYIEGLPQGPTTAEET  163 (435)
T ss_dssp             TTEECCHHHHHHHHHHHHHHHHHSCEEEEETTEEEEECHHHHHHHHHHHTTCCC---CGGGCTTEEETTCSCCCC-----
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCceeecccceEEEECccchhhcchhcccccc---ccccccccccccCCCcccccccc
Confidence            666899999999999999999998999999999999999987543211000000   000000 000010000    000


Q ss_pred             Cch-----hhhhhhhhc---cCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCc
Q 007824          164 DSK-----ATVKEWLCR---CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF  235 (588)
Q Consensus       164 ~~~-----~~~~~~~~~---~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~  235 (588)
                      ...     ..+.+|++.   ++.+|.+..+..|+.+|++||++|++++|||||||||+||++||||++++||+|++++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~  243 (435)
T 4ecq_A          164 VQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH  243 (435)
T ss_dssp             CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCG
T ss_pred             cchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEeh
Confidence            011     134556542   456788888999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHhcccCCCCCCCCCcHHHHHH-HHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCCccc
Q 007824          236 SSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH  314 (588)
Q Consensus       236 ~~~~~~L~~lPI~~l~GiG~k~~~~-L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~pKsi  314 (588)
                      +++.+||+++||++|||||++++++ |. .+||+|++||+++|+..|+++||...|.+||+.|+|+|+++|.+..++|||
T Consensus       244 ~~~~~~L~~lpv~~l~GiG~~~~~~lL~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi  322 (435)
T 4ecq_A          244 GSVPQLFSQMPIRKIRSLGGKLGASVIE-ILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTI  322 (435)
T ss_dssp             GGHHHHHHTCBGGGSTTCSSHHHHHHHH-HHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCE
T ss_pred             hHHHHHHhhCCHHHhcCCCHHHHHHHHH-HcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCee
Confidence            9999999999999999999999887 66 899999999999999999999995579999999999999999988889999


Q ss_pred             ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEEEEEEEeccCCCCCCCcccCccccccCCCc-hhH
Q 007824          315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGT-AKI  393 (588)
Q Consensus       315 ~~s~sF~~~~~i~~~e~l~~~L~~La~eL~~RLr~~l~~~~~~~~tltL~lr~~~~~~~~~~~~~~s~s~~L~~~T-~~i  393 (588)
                      +++++|+.+.++++.+++..+|..|+++|+.||+++..++++.|++|+|++++.++..    ....+++++|+.++ .+|
T Consensus       323 ~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~----~~~~~R~~~l~~~~~~~i  398 (435)
T 4ecq_A          323 GCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKR----LSSLRRCCALTRYDAHKM  398 (435)
T ss_dssp             EEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCS----SCSEEEEEECCSCCHHHH
T ss_pred             eeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCC----CceeEEeccCCCCCHHHH
Confidence            9999999633588999999999999999999999864456899999999999976432    23457889998553 478


Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCCC-CCCceeEEeeccCCccc
Q 007824          394 QEDTFNLFQAGLREFLGSFGVKTQGSHY-SGWRITALSVSASKIVP  438 (588)
Q Consensus       394 ~~~A~~Ll~~i~r~~~~~~~y~kaGv~~-~~~~Ir~lgvs~s~L~~  438 (588)
                      .++|..||++.|+       .   |.+. -..+||.|||++++|.+
T Consensus       399 ~~~a~~L~~~~~~-------~---~~~~~~~~pir~lgvs~s~f~~  434 (435)
T 4ecq_A          399 SHDAFTVIKNCNT-------S---GIQTEWSPPLTMLFLCATKFSA  434 (435)
T ss_dssp             HHHHHHHHGGGCC-------C---SSTTEEEEEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhh-------c---cccccCCCCeeEEEEEEeeccc
Confidence            8888888887321       1   1100 02379999999999875
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis} Back     alignment and structure
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ... Back     alignment and structure
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Back     alignment and structure
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Back     alignment and structure
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A Back     alignment and structure
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Back     alignment and structure
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Back     alignment and structure
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Back     alignment and structure
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Back     alignment and structure
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Back     alignment and structure
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Back     alignment and structure
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 Back     alignment and structure
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B Back     alignment and structure
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1 Back     alignment and structure
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1 Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} Back     alignment and structure
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Back     alignment and structure
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A Back     alignment and structure
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A Back     alignment and structure
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 588
d1jiha2389 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas 3e-62
d1t94a2333 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho 3e-59
d1zeta2273 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom 3e-59
d1im4a_209 e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob 3e-28
d1jx4a2240 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul 2e-26
d1jiha1120 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's 6e-22
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase eta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  208 bits (530), Expect = 3e-62
 Identities = 85/368 (23%), Positives = 124/368 (33%), Gaps = 59/368 (16%)

Query: 8   SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
            S    IAH+D++ F+ QVEQ +    +  P   VQ+N      +IAV Y AR YG+ R 
Sbjct: 20  ESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWN-----SIIAVSYAARKYGISRM 74

Query: 68  MRGDEAKEVCPQIELVQVPVARG---------------------------KADLSSYRNA 100
               EA + C  +  +   V +                            K  L  YR  
Sbjct: 75  DTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRE 134

Query: 101 GSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESL------DEVDEEALKSH 153
             + + I        ERASIDEV+LDL      ML       L       +      ++ 
Sbjct: 135 SRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAF 194

Query: 154 ILGLESKDGNDSKATVKEWLCRCD------------ADHRDKLLACGVLIVTELRMQVLK 201
           I G    + +      K    + +             D  D +LA G  +   +R  +  
Sbjct: 195 IGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKD 254

Query: 202 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--LPIKKMKQLGGKLGT 259
              +T S G++  K + KLAS   KP  QT V    +   LD     I     LGG LG 
Sbjct: 255 ILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGK 314

Query: 260 SLQNELGVTTVGDLLKFSE---DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 316
            L + L +     +    E   D   +   F     +       S   +          +
Sbjct: 315 ELIDVLDLPHENSIKHIRETWPDNAGQLKEFL-DAKVKQSDYDRSTSNIDPLKTADL--A 371

Query: 317 GKSFPGPR 324
            K F   R
Sbjct: 372 EKLFKLSR 379
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Back     information, alignment and structure
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 Back     information, alignment and structure
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 Back     information, alignment and structure
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 120 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
d1zeta2273 DNA polymerase iota {Human (Homo sapiens) [TaxId: 100.0
d1t94a2333 DNA polymerase kappa {Human (Homo sapiens) [TaxId: 100.0
d1jx4a2240 DinB homolog (DBH) {Archaeon Sulfolobus solfataric 100.0
d1jiha2389 DNA polymerase eta {Baker's yeast (Saccharomyces c 100.0
d1im4a_209 DinB homolog (DBH) {Archaeon Sulfolobus solfataric 100.0
d1jiha1120 DNA polymerase eta {Baker's yeast (Saccharomyces c 99.24
d1jx4a1101 DinB homolog (DBH) {Archaeon Sulfolobus solfataric 99.24
d1t94a1105 DNA polymerase kappa {Human (Homo sapiens) [TaxId: 99.16
d1unnc_111 DNA polymerase IV {Escherichia coli [TaxId: 562]} 99.08
d1k1sa1105 DinB homolog (DBH) {Archaeon Sulfolobus solfataric 99.07
d1zeta1115 DNA polymerase iota {Human (Homo sapiens) [TaxId: 98.93
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 97.23
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 96.79
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 95.84
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 95.58
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 94.96
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 94.73
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 94.65
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 94.38
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 93.54
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 93.33
d1doqa_69 C-terminal domain of RNA polymerase alpha subunit 92.36
d1gm5a2180 RecG "wedge" domain {Thermotoga maritima [TaxId: 2 92.35
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 91.81
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 91.67
d1lb2b_72 C-terminal domain of RNA polymerase alpha subunit 90.77
d1z3eb167 C-terminal domain of RNA polymerase alpha subunit 90.22
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 90.09
d1qw2a_102 Hypothetical protein Ta1206 {Archaeon Thermoplasma 88.08
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-65  Score=519.47  Aligned_cols=271  Identities=35%  Similarity=0.510  Sum_probs=235.3

Q ss_pred             CCEEEEEeCChhHHHHhhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHhcCCCCCCcHHHHHhhCCCcEEEEccCCCC
Q 007824           11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARG   90 (588)
Q Consensus        11 ~r~I~hiD~D~FyasvE~~~~P~L~~~PvaV~~~~~~~~g~Via~SyeAR~~GVk~gM~~~~A~~lcP~L~~v~v~~~~~   90 (588)
                      +|+|+||||||||||||++++|+|+|+||||.+     +|+|+||||+||++||++||++.+|+++||++++++      
T Consensus         1 sRvI~hiD~d~FyasvE~~~~p~l~~~PvaV~~-----~g~v~a~sy~AR~~GVk~gm~~~~A~~~cP~l~v~~------   69 (273)
T d1zeta2           1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN------   69 (273)
T ss_dssp             CCCEEEEEETTHHHHHHHHHCGGGTTSCCEEES-----SSBEEEECHHHHTTTCCSCBCHHHHHHTCTTCCCEE------
T ss_pred             CcEEEEEcCChHHHHHHhHhCccccCCcEEEcC-----CcEEEEeCHHHHHhCCCCCCCHHHHHHhCccccccc------
Confidence            589999999999999999999999999999964     378999999999999999999999999999998875      


Q ss_pred             CCChHHHHHHHHHHHHHHhhc-CCeEEeccceEEEeccchhHHhhhcCCCCCchhhhHHhhhhhcccCccCCCCCchhhh
Q 007824           91 KADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV  169 (588)
Q Consensus        91 ~~d~~~Y~~~S~~v~~iL~~~-~~vE~~SiDEafLDlt~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  169 (588)
                      ++|++.|+++|++|+++|.+| +.||++||||+|||+|++....+.+...+.+   .......++|+...          
T Consensus        70 ~~~~~~Y~~~S~~i~~~l~~~~~~ve~~SiDE~flDlt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------  136 (273)
T d1zeta2          70 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDEL---SAVTVSGHVYNNQS----------  136 (273)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSGG---GGCCCCSEEGGGCC----------
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCeeEEEcCcceEEeccccccccccccccchh---hccccccccccccc----------
Confidence            368999999999999999998 7999999999999999988655443322111   01111223343221          


Q ss_pred             hhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEEecCcHHHHHHHhcCCCCCCccccCccCHHHhcccC-CCC
Q 007824          170 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK  248 (588)
Q Consensus       170 ~~~~~~~~~~~~~~ll~~g~~la~~Ir~~I~~~~Glt~SvGIa~nk~LAKLAs~~~KP~g~~vv~~~~~~~~L~~l-PI~  248 (588)
                           -+-.+|.+..+..+..+|++||++|++++|+|||+|||+||+|||||++++||||++++.++++..||+++ ||+
T Consensus       137 -----~~~~d~~~~~~~~~~~~a~~ir~~I~~~~g~~~svGIa~nk~lAKlAs~~~KP~g~~vi~~~~~~~~l~~l~pv~  211 (273)
T d1zeta2         137 -----INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIK  211 (273)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHTTCSSGG
T ss_pred             -----ccchhhhhhhcccHHHHHHHHHHHHHHHhCCCeEeeecCcHHHHHHHhhccccccccchhhhhHHHHHhcCcchH
Confidence                 01124555567778899999999999999999999999999999999999999999999999999999998 799


Q ss_pred             CCCCCcHHHHHHHHHhhCCcchhhhccCCHHHHHHHhCcchHHHHHHHHhcCCCcccccccCC
Q 007824          249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP  311 (588)
Q Consensus       249 ~l~GiG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rfG~~~g~~l~~~a~G~d~~~v~~~~~p  311 (588)
                      +|||||++++++|+ .+||+|++||+++|...|+++||...|.++|+.++|+|.+||.+..+|
T Consensus       212 ~l~GiG~~~~~~L~-~~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~a~G~D~~pV~~~~~P  273 (273)
T d1zeta2         212 EIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPP  273 (273)
T ss_dssp             GSTTCCHHHHHHHH-TTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSC
T ss_pred             HhcCCCHHHHHHHH-HhCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHHHcCcCCCCCCCCCCC
Confidence            99999999999998 799999999999999999999998679999999999999999887665
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Back     information, alignment and structure
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Back     information, alignment and structure
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure