Citrus Sinensis ID: 007827
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV10 | 616 | Probable peptide/nitrate | yes | no | 0.964 | 0.920 | 0.580 | 0.0 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.947 | 0.875 | 0.594 | 0.0 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.993 | 0.994 | 0.568 | 0.0 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.913 | 0.866 | 0.474 | 1e-153 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.933 | 0.953 | 0.445 | 1e-136 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.925 | 0.980 | 0.414 | 1e-118 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.909 | 0.938 | 0.395 | 1e-115 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.950 | 0.937 | 0.401 | 1e-114 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.906 | 0.935 | 0.385 | 1e-112 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.894 | 0.940 | 0.380 | 1e-110 |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/572 (58%), Positives = 438/572 (76%), Gaps = 5/572 (0%)
Query: 5 SKTAVVATDDEPQ----LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
S TAV + +++ Q + YRGWK MPF+IGNETFEKLG GT SNLLVYLT +FN+KSI
Sbjct: 25 SVTAVDSVEEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSI 84
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA T+IN FSGT NF T + AFL DTYFGRYKTL A +A FLG V+ LTAA+ +LHP
Sbjct: 85 TAATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPA 144
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
CG C GP+ Q+AFL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+GI S
Sbjct: 145 ACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDS 204
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FTFTFA ++SLT++VYVQS+VSW GL IPA +MFL+C +FF G +LY K+K
Sbjct: 205 FFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKAS 264
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPLA QV AIKKR LK ++PWL L+N+ P NSKL +T QFR LDKAAI+TP
Sbjct: 265 GSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILTP 324
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
ED+++ DG +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ + QQ TY VFQALQSD
Sbjct: 325 EDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSD 384
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G+ F IPAA+Y +F M G+T++I +YDR++VP ++R+T + GIT+LQR+ G+
Sbjct: 385 RRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFF 444
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
A +++++G +E++RR+ AL++P +G+ R+G ISS+S +WLIPQLSL G +EAF I +
Sbjct: 445 ATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQ 504
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
+EFYYKQFPENMRS GS+ +VG +S+YL FLI+ VHR T+ +S G+WL EDLNKGRL
Sbjct: 505 MEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRL 564
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 571
D FY+++A + +NF +FL+ ++WY+YKGS D
Sbjct: 565 DLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/560 (59%), Positives = 432/560 (77%), Gaps = 3/560 (0%)
Query: 13 DDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGT 72
+++ ++ YRGWK MPF+IGNETFEKLG GT SNLLVYLT++FN+KS TA T+IN FSGT
Sbjct: 55 EEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGT 114
Query: 73 TNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132
NF T + AFL DTYFGRYKTL A +A FLG V+ LTAAI LHP CGN+ S C G
Sbjct: 115 INFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKIS--CEG 172
Query: 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192
P+ Q+ FL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+GI SFFNWY+FTFTFA
Sbjct: 173 PSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFA 232
Query: 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFV 252
+ISLT +VY+QS+VSW GL IP +MFL+C +FF G RLY KVK GSPLA +V
Sbjct: 233 QIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIA 292
Query: 253 AAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAIN 312
AAIKKR LK ++PW+ L+NHIP N N+ L +T QFR LDKAAIMTPE+++ SDG+A +
Sbjct: 293 AAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMTPEEKLNSDGTASD 352
Query: 313 PWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPA 372
PW+L ++Q+VEEVK ++RVIPIW ++ +YY+A+ Q TY VFQALQSDRR+G+ F+IPA
Sbjct: 353 PWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPA 412
Query: 373 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIE 432
A+Y +F M G+T++I YDR++VP L+R+T E GI++LQR+ G AI ++++SG IE
Sbjct: 413 ATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIE 472
Query: 433 DKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 491
++RR+ AL++P +G+ R G ISS+S LWLIPQL+L G +EAF I ++EFYYKQFPENM
Sbjct: 473 ERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENM 532
Query: 492 RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGL 551
+S GS+ +VG +S+YL FLIS VHR T + +G+WL EDLNK +LDYFY+++ L +
Sbjct: 533 KSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLTGLMV 592
Query: 552 LNFGFFLLCAKWYKYKGSGD 571
+N +FLL A+WY+YKG D
Sbjct: 593 VNMAYFLLMARWYRYKGGND 612
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/589 (56%), Positives = 437/589 (74%), Gaps = 5/589 (0%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
ME +A DDE ++ YRGWK MPF+IGNETFEKLG G+SSNL++YLTT+FNMKSI
Sbjct: 1 MEVEKTEKNIAEDDESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSI 60
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA ++NI+ GT+NF T++ AFL D+YFGRYKTL FA +A FLG + + LTA I LHP
Sbjct: 61 TAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPA 120
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C + C GP+ Q+ FL + L+VIGAGGIRPCNL FGADQF+P T+ GK+GI S
Sbjct: 121 QCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIES 180
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C +FF GS+LY KVK
Sbjct: 181 FFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKAS 240
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSP+ S +V V AIKKR LK P P L+N+I + NSKL HT QFR LDK+AI T
Sbjct: 241 GSPIHSITRVIVVAIKKRRLK-PVGPN-ELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQ 298
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
+D++ DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A +QQ TY +FQ+LQSD
Sbjct: 299 DDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSD 358
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++GGIT LQR+ G+ L
Sbjct: 359 RRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFL 418
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
I +M++S I+E RR +AL++P +GL R+GAISS+SG+WLIPQL L+G ++A + +
Sbjct: 419 CITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQ 478
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
+EFYYKQFPENMRS GSL + G +++YL+ FL+S VH T+G S G WLPEDLNKGRL
Sbjct: 479 MEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRL 538
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 588
+YFY+LVA + LN +FLL + WY+YK A + M+K + E V
Sbjct: 539 EYFYFLVAGMMTLNLAYFLLVSHWYRYKDV--VAKDKDMDKTSAEFDKV 585
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/550 (47%), Positives = 376/550 (68%), Gaps = 13/550 (2%)
Query: 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGA 81
GW+++ F++GNET E+LG+ G +N +VYLT +F+++ + A +INI+SG TN L+GA
Sbjct: 54 GWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGA 113
Query: 82 FLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 141
++SDTY GR+KT+ FAS A+ LG++ ++LTA+ +LHP C +QD +C GP Q+ L
Sbjct: 114 YISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVL 173
Query: 142 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201
GL + +G+GGIRPC++ FG DQF+ TE G +G+ SFFNWYY TFT ++I+ TV+V
Sbjct: 174 LLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVV 233
Query: 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261
Y+Q VSW G IP +M L+ MFF G + Y VKPEGS + QV VAA KKR LK
Sbjct: 234 YIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLK 293
Query: 262 LPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSM 319
LP E T+ + P K+ + SKL + QFRCLDKAA++ E + +G + WRL S+
Sbjct: 294 LPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI-EGDLTPEGPPADKWRLCSV 352
Query: 320 QKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFS 379
Q+VEEVK LIR++PIW++ I+ A+ Q T+ V QAL+ DR +G F+IPA S ++ S
Sbjct: 353 QEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLG-PKFEIPAGSLSVIS 411
Query: 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKR--RS 437
+L + I++P YDR+ VP ++R+T + GIT+LQR+ G++ AIF+MI++GI+E R RS
Sbjct: 412 LLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRS 471
Query: 438 LALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGS 497
+ P G+ + +S WL PQL L+G EAF II ++EF+ QFPE+MRSI S
Sbjct: 472 INAGDPTGM-------TPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANS 524
Query: 498 LAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFF 557
L + FA S+YL+ FL+++VH+F+ G DWL ++LN G+LDYFYYL+A LG++N +F
Sbjct: 525 LFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYF 584
Query: 558 LLCAKWYKYK 567
CA+ Y+YK
Sbjct: 585 WYCARGYRYK 594
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/573 (44%), Positives = 363/573 (63%), Gaps = 24/573 (4%)
Query: 16 PQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNF 75
P+ GW+++ F++GNET EKLG+ G S+N ++YL +F+M+ + A + ++ G TNF
Sbjct: 11 PEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNF 70
Query: 76 ATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 135
A LLGA +SD Y GR+KT+ +AS+ S LG++ ++LTA + +LHPP C N C P
Sbjct: 71 APLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNK 130
Query: 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195
QL LF GLG + IG+GGIRPC++ FG DQF+ TE G +G+ SFFNWYY T T ++
Sbjct: 131 LQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIF 190
Query: 196 SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAI 255
S TV+VY+Q+ VSW G IP +M + +FF+G R Y VKPEGS + +V VAA
Sbjct: 191 SHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAAR 249
Query: 256 KKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINP 313
KKR LK+ T + P K + SKLP T QF+ LDKAA++ D + S+G N
Sbjct: 250 KKRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVILDGD-LTSEGVPANK 308
Query: 314 WRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAA 373
WRL S+Q+VEEVK LIRV+P+W++ I+ VA+ Q T++VFQA + DR +G HF+IPAA
Sbjct: 309 WRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMG-PHFEIPAA 367
Query: 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIED 433
S + S + + IW+PIY+ ++VP L R+ K +T+LQRM IG++ AI +M +G +E
Sbjct: 368 SITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRMGIGIVFAILSMFTAGFVEG 425
Query: 434 KRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS 493
RR+ R ++ +S WL L L+G E+F I +EF+ QFPE+MRS
Sbjct: 426 VRRT-----------RATEMTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRS 474
Query: 494 IGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553
I SL + FA +NYL+ L++ VH+ + DWL +DL++G+LDYFYYL+A LG++N
Sbjct: 475 IANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVN 534
Query: 554 FGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKS 586
+F CA Y+YK +E N EKS
Sbjct: 535 LVYFWYCAHRYQYKAGSQ------IEDFNEEKS 561
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/570 (41%), Positives = 367/570 (64%), Gaps = 26/570 (4%)
Query: 2 EKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT 61
EK + ++ + T L GWK+MP++IGNET E+L T G +N +VY+ ++M +
Sbjct: 4 EKGTSSSDLTTRQRKPL---GWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQ 60
Query: 62 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121
A TLIN +S TNFA ++GAF+SD+Y G++ T+ F S+A LGMLVL+ T+ + L PP
Sbjct: 61 AVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPP 120
Query: 122 C-GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C +Q +G C + QL L +GL L+ +G GGIR C++ F DQF+ +TE G++G S
Sbjct: 121 CTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRS 180
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FF+WYY T T ++S+T+++YVQ+++SW G IP + F + + F+G+R Y VKPE
Sbjct: 181 FFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPE 240
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINS-KLPHTGQFRCLDKAAIMT 299
GS + +V VAA KKR + + H + + + S KL T QFR L+KA I+
Sbjct: 241 GSVFSGVFKVLVAAYKKRKARFTSG--IDYHQPLLETDLQSNKLVLTDQFRFLNKAVIVM 298
Query: 300 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 359
D+ ++ WR +++++E++K +I +IPI+AS+I+ ++A+ QQQT+ V QAL+
Sbjct: 299 NNDEAGNE-----EWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKM 353
Query: 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 419
D + T + IP AS + S+L + IW+P Y+ ++V ++ +TK+ GGI++LQ++ IG I
Sbjct: 354 DLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNI 413
Query: 420 LAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
+I TM+ISGI+E KRR L+L+ G++ +S WL PQ L+GF + FTI+
Sbjct: 414 FSISTMLISGIVERKRRDLSLN---GVK--------MSVFWLTPQQVLMGFYQVFTIVGL 462
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-KGASTGDWLPEDLNKGR 538
EF+ KQ P NMRSIG SL ++G ++++YL+ ++S+VH T +G + WL +D++K +
Sbjct: 463 TEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS--WLTDDIDKSK 520
Query: 539 LDYFYYLVAALGLLNFGFFLLCAKWYKYKG 568
LD FYY +AAL LNF FF CA+ Y+Y+
Sbjct: 521 LDCFYYFIAALSTLNFIFFFWCARRYRYRN 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/548 (39%), Positives = 327/548 (59%), Gaps = 13/548 (2%)
Query: 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGA 81
WK+ F++GNE E+L G +NL+ YL + N + TA + +SGT L+GA
Sbjct: 27 NWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGA 86
Query: 82 FLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 141
F++D Y GRY T+ GM +L+L+A++ L P +C N D+ C P Q A
Sbjct: 87 FIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNC-NADT--CH-PNSSQTAVF 142
Query: 142 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201
F L ++ +G GGI+PC +FGADQF+ N E+ K +SFFNW+YF+ +I+ TV+V
Sbjct: 143 FVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLV 202
Query: 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261
++Q +V W WG G+P M ++ FF GSR Y +P GSPL QV VAA +K +K
Sbjct: 203 WIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVK 262
Query: 262 LPEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSM 319
+PE+ L ++ I + KL HT + DKAA+ + D IK DG +NPWRL S+
Sbjct: 263 VPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSV 320
Query: 320 QKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFS 379
+VEE+K +I ++P+WA+ IV+ Q T V Q D+ +G +F+IP+AS ++F
Sbjct: 321 TQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGK-NFEIPSASLSLFD 379
Query: 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439
+ + W P+YD+ I+P ++ T+ E G T LQRM IG++++IF MI +G++E R
Sbjct: 380 TVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYV 439
Query: 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA 499
+ +Q++ +S W IPQ LIG +E FT I ++EF+Y Q P+ MRS+ +L+
Sbjct: 440 KTHN-AYDQKQ---IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS 495
Query: 500 FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLL 559
A+ NYL+ L+++V + TK W+P++LN+G LDYF+YL+A L LNF +L
Sbjct: 496 LTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLW 555
Query: 560 CAKWYKYK 567
+K YKYK
Sbjct: 556 ISKRYKYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/576 (40%), Positives = 349/576 (60%), Gaps = 17/576 (2%)
Query: 1 MEKNSKTAVVATDDEPQLNYR------GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI 54
ME+ SK + +++E QL+ R G +MPF+ NE EKL G +N++ YLTT
Sbjct: 1 MEEQSKNKI--SEEEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQ 58
Query: 55 FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114
++ A + F+GT++ LLGAF++D++ GR+ T+ FAS+ +GM +L+++A I
Sbjct: 59 LHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAII 118
Query: 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESG 174
L PP C ++ C QL+ L+ L L +G+GGIRPC +AFGADQF+ + +
Sbjct: 119 PTLRPPPCKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQ 176
Query: 175 KQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234
++FNWYYF A+++++TV+V++Q +V W GLGIP MFLS F G +LY
Sbjct: 177 TTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLY 236
Query: 235 AKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCIN--SKLPHTGQFRCL 292
+ P GSP +QV VAA +KR L++ +P L N I+ KL HT L
Sbjct: 237 RHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFL 296
Query: 293 DKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYV 352
DKAAI+T ED +K G N WRLS++ +VEE+K +IR+ PI AS I+ A QQ T+
Sbjct: 297 DKAAIVTEEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFS 355
Query: 353 VFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ 412
+ QA +R + N+ F+IPA S ++F+ + + I YDR+ V ++ T E GIT L
Sbjct: 356 LQQAKTMNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLH 414
Query: 413 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSE 472
RM IG +++I +++G +E KR+S+A+ GL + I +S LWLIPQ L G +E
Sbjct: 415 RMGIGFVISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWLIPQYGLHGVAE 472
Query: 473 AFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 532
AF I +EF+Y Q PE+MRS +L ++ +I NY++ L+++VH+F+ +WLP+
Sbjct: 473 AFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPD 532
Query: 533 -DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567
+LN+GRL+YFY+L+ L +N ++L CAK Y YK
Sbjct: 533 NNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/547 (38%), Positives = 324/547 (59%), Gaps = 14/547 (2%)
Query: 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAF 82
WK+ F++G E E+L G S+NL+ YL NM++++A+ ++ +SGT L+GAF
Sbjct: 29 WKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAF 88
Query: 83 LSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142
++D Y GRY T+ V GM +L+++A++ L P C + A G Q A F
Sbjct: 89 IADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETCHATAG----QTAITF 143
Query: 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202
L L+ +G GGI+PC +FGADQF+ E K+ +SFFNW+YF MI+ +V+V+
Sbjct: 144 IALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVW 203
Query: 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262
+Q +V W WGLG+P M ++ FF GS Y KP GSPL +QV VA+ +K +K+
Sbjct: 204 IQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKI 263
Query: 263 PEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ 320
PE+ L N ++ I + KL HT DKAA+ T D + S+ W+L ++
Sbjct: 264 PEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSS--SWKLCTVT 321
Query: 321 KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSM 380
+VEE+K LIR++PIWA+ IV+ Q T V Q D+ +G +FKIP+AS ++F
Sbjct: 322 QVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFDT 380
Query: 381 LGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 440
L + W P+YD++IVP ++ T E G T LQR+ IG++++IF+M+ +GI+E R +
Sbjct: 381 LSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQ 440
Query: 441 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500
+ + E+ ++ W +PQ L+G +E FT I ++EF+Y Q P+ MRS+ +L+
Sbjct: 441 THNLYNEET----IPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 496
Query: 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLC 560
A NYL+ FL+++V + T+ W+ ++LN G LDYF++L+A L LNF +L
Sbjct: 497 TAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWI 556
Query: 561 AKWYKYK 567
AKWY YK
Sbjct: 557 AKWYTYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/549 (38%), Positives = 337/549 (61%), Gaps = 23/549 (4%)
Query: 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGA 81
GW+++ ++I NE+FEKL + NL VYL T +N+ + +INI+ G+ N TL GA
Sbjct: 20 GWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGA 79
Query: 82 FLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG-PTPWQLAF 140
F+SD Y GR+ TL S+ASF+GM + +LTAA+ L P C D C P WQL
Sbjct: 80 FVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC--IDPSNCSNQPAKWQLGV 137
Query: 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200
LF+GLGL+ IGAGG+RPCN+AFGADQF+ +T+ GK + +FFNW+YF+FT A++I+LT +
Sbjct: 138 LFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALVIALTGV 197
Query: 201 VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHL 260
VY+Q+++SW G IP + LS F +G Y K EGS A V+V AA KKR +
Sbjct: 198 VYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRKV 257
Query: 261 KLPEEPWLTL---HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLS 317
K + + ++ P + K + R DKA+I+T +++ DG+A WRL
Sbjct: 258 KPGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVTNPNELNEDGNAKYKWRLC 313
Query: 318 SMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 377
S+Q+V+ +K + ++P+W + I ++ QQ Y + QA+Q D+ G +F++PA +
Sbjct: 314 SVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVPAGWMNL 373
Query: 378 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRS 437
SM+ L IWI +Y+ +I+P ++++T ++ +T+ R+ I ++ I MI++G E KRR+
Sbjct: 374 VSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--VMGIICMIVAGFQEKKRRA 431
Query: 438 LALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496
AL + G+ +S +S + L+PQ +L G +EAF+ +A +EF + PE+MR++ G
Sbjct: 432 SAL--------KNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAG 483
Query: 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL-PEDLNKGRLDYFYYLVAALGLLNFG 555
++ F+ +I++Y+ LI+++ T+ WL +DLNK RL+ +++++A + + N
Sbjct: 484 AIFFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFIIAGIQVANLL 542
Query: 556 FFLLCAKWY 564
+F L A Y
Sbjct: 543 YFRLFASRY 551
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| 296453136 | 588 | nitrate transporter [Citrus trifoliata] | 1.0 | 1.0 | 0.971 | 0.0 | |
| 225456647 | 586 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.993 | 0.721 | 0.0 | |
| 225456645 | 586 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.993 | 0.708 | 0.0 | |
| 224119132 | 586 | predicted protein [Populus trichocarpa] | 0.948 | 0.952 | 0.754 | 0.0 | |
| 297734038 | 1053 | unnamed protein product [Vitis vinifera] | 0.972 | 0.543 | 0.702 | 0.0 | |
| 449441051 | 589 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.988 | 0.693 | 0.0 | |
| 359491749 | 577 | PREDICTED: probable peptide/nitrate tran | 0.960 | 0.979 | 0.683 | 0.0 | |
| 224059970 | 596 | predicted protein [Populus trichocarpa] | 0.979 | 0.966 | 0.668 | 0.0 | |
| 225452684 | 585 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.994 | 0.670 | 0.0 | |
| 255540889 | 602 | nitrate transporter, putative [Ricinus c | 0.993 | 0.970 | 0.636 | 0.0 |
| >gi|296453136|gb|ADH21397.1| nitrate transporter [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/588 (97%), Positives = 580/588 (98%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
MEKN+KTAV TDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTT+FNMKSI
Sbjct: 1 MEKNNKTAVFTTDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTVFNMKSI 60
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TATTLINIF+GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL+LTAAISKLHPP
Sbjct: 61 TATTLINIFNGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLTLTAAISKLHPP 120
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
DCGNQDSGAC GPTPWQLAFLF GLGLMVIGAGGIRPCNLAFGADQFNPNTESGK+GITS
Sbjct: 121 DCGNQDSGACSGPTPWQLAFLFIGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKKGITS 180
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY KVKP+
Sbjct: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYVKVKPD 240
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCL+KAAIMTP
Sbjct: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLEKAAIMTP 300
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
EDQIKSDGSAINPWRLSS QKVEEVKVLIRVIPIWASAIVYYVA VQQQTYVVFQALQSD
Sbjct: 301 EDQIKSDGSAINPWRLSSKQKVEEVKVLIRVIPIWASAIVYYVASVQQQTYVVFQALQSD 360
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL
Sbjct: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
Query: 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEV 480
AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEV
Sbjct: 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEV 480
Query: 481 EFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLD 540
EFYYKQFPENMRSIGGSL FVGFAISNYL+GFLISMVHRFTKGASTGDWLPEDLNKGRLD
Sbjct: 481 EFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLD 540
Query: 541 YFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 588
YFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEK+NPEKSPV
Sbjct: 541 YFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKVNPEKSPV 588
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456647|ref|XP_002270812.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/586 (72%), Positives = 501/586 (85%), Gaps = 4/586 (0%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
ME N K VVATD EP+ +RG K+MPFVIGNETFEKLGT GTS+NLLVYLTT+FNMKSI
Sbjct: 1 MENNEK--VVATD-EPKTKHRGIKAMPFVIGNETFEKLGTIGTSTNLLVYLTTVFNMKSI 57
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TATT +N+F+G+TNFATL+GAFL DTYFGRY TLGFAS++SFLGMLV++LTAA+ K+HPP
Sbjct: 58 TATTFVNVFNGSTNFATLIGAFLCDTYFGRYTTLGFASISSFLGMLVITLTAAVQKMHPP 117
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
CG D+G C GPT Q+AFL +G GL+VIGA GIRPCNLAFGADQFNP TESGK+GI+S
Sbjct: 118 HCGTTDTGTCIGPTAGQMAFLLSGFGLLVIGAAGIRPCNLAFGADQFNPETESGKRGISS 177
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWYYFT+TFAMM+SLTVIVYVQSDVSW+ GL IP +M LSCA+FF+G+R+Y KVKPE
Sbjct: 178 FFNWYYFTYTFAMMVSLTVIVYVQSDVSWSLGLAIPTLLMLLSCALFFMGTRIYVKVKPE 237
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPL + QV VAA+KKR L+LP +PWL+L NHIP N INSKLPHT QFR L K AI+TP
Sbjct: 238 GSPLKNVAQVIVAAVKKRRLELPGQPWLSLFNHIPANSINSKLPHTDQFRFLSKGAILTP 297
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
E QI SDGSA NPWRLSSMQKVEEVK +IRVIPIWA+ I+YYVALVQQ TYVVFQALQSD
Sbjct: 298 EVQINSDGSAANPWRLSSMQKVEEVKCVIRVIPIWAAGIIYYVALVQQSTYVVFQALQSD 357
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G+T FKIPAASY +F+ML LTIWIPIYD+IIVP L+RLT KE GIT+LQ+M IGM+L
Sbjct: 358 RRLGSTGFKIPAASYTVFTMLSLTIWIPIYDQIIVPLLRRLTGKEVGITLLQKMGIGMVL 417
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
A+ TMI+S ++E++RR+LAL++ VG+E RRGAISSLSG+WL+PQL+LIG SE TII +
Sbjct: 418 AVITMILSALVEERRRTLALTKATVGIEARRGAISSLSGMWLVPQLTLIGISEGLTIIGQ 477
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
VEF+YKQFPENMRS G+ F G A SNYL+ FL+S+VH+ T G +TG+WLPEDLNKGRL
Sbjct: 478 VEFFYKQFPENMRSFAGAFLFCGIAFSNYLSSFLVSIVHQSTGGTATGNWLPEDLNKGRL 537
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 585
DYFYYLVAALG++N +FL CAKWYKYK S + EV++EK+ P+K
Sbjct: 538 DYFYYLVAALGMVNLLYFLACAKWYKYKDSEESPLEVSLEKMQPQK 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456645|ref|XP_002266777.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/586 (70%), Positives = 496/586 (84%), Gaps = 4/586 (0%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
MEKN K T DEP YRG K+MPF+IGNETFE LGT GTSSNLLVYLT +FNMKSI
Sbjct: 1 MEKNEKAG---TADEPNFEYRGLKAMPFIIGNETFENLGTVGTSSNLLVYLTAVFNMKSI 57
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA TLINIF GTTN TL+GAFL DTYFGRYKTLGFA+VASF+GMLV++LTA ISKLHPP
Sbjct: 58 TAVTLINIFYGTTNLGTLVGAFLCDTYFGRYKTLGFATVASFMGMLVITLTALISKLHPP 117
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C + +G C GPT WQ+AFL G GL+VIGA GIRPCNLAFGADQFNP TESGK+G++S
Sbjct: 118 HCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGADQFNPITESGKRGLSS 177
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C +FF+G+R+Y K++P+
Sbjct: 178 FFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLACVLFFMGTRIYVKLEPK 237
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP+T QFR LDK AI+TP
Sbjct: 238 GSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLPYTDQFRFLDKGAIITP 297
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
EDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVAL QQQTY VFQ+LQSD
Sbjct: 298 EDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVALAQQQTYTVFQSLQSD 357
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
R +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T KEGGIT+LQ+M +GM L
Sbjct: 358 RHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGKEGGITVLQKMGVGMFL 417
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
+I TM++S +E +RR+LAL P + ++ RRGAISS+SGLW IPQL+L+G SEAFT+IA+
Sbjct: 418 SIVTMLVSAFVEHQRRTLALCEPTLRIDPRRGAISSMSGLWFIPQLTLVGVSEAFTVIAQ 477
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
VEF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T GA++G+WLPEDLNKGRL
Sbjct: 478 VEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGAASGNWLPEDLNKGRL 537
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 585
DYFYYLVAALG++N G+FLLCAKWYKYKGS EV ME++ EK
Sbjct: 538 DYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESEK 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119132|ref|XP_002317993.1| predicted protein [Populus trichocarpa] gi|222858666|gb|EEE96213.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/562 (75%), Positives = 493/562 (87%), Gaps = 4/562 (0%)
Query: 14 DEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTT 73
DE + NYRG K+MPFVIGNETFEKLG+TGT SNLLVYLTT+F+MKSITATTLINIF+GTT
Sbjct: 10 DEHRENYRGVKAMPFVIGNETFEKLGSTGTLSNLLVYLTTVFHMKSITATTLINIFNGTT 69
Query: 74 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC--GNQDSGACP 131
N ATLLGAFL DTYFGRYKTL FAS+ASFLGM+V++LTAAISKLHPP C G QD+ ACP
Sbjct: 70 NIATLLGAFLCDTYFGRYKTLAFASIASFLGMVVITLTAAISKLHPPQCASGTQDTAACP 129
Query: 132 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191
TPWQ+ FL +GLGL+VIG GGIRPCNLAFGADQFNP TESG++GITSFFNWYYFTFTF
Sbjct: 130 ALTPWQMTFLLSGLGLLVIGGGGIRPCNLAFGADQFNPQTESGRKGITSFFNWYYFTFTF 189
Query: 192 AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVF 251
AMMISLT++VYVQSD++WAWGL IPAF+MF SC +FF GSR+Y KVKP+GSPL S VQV
Sbjct: 190 AMMISLTIVVYVQSDINWAWGLAIPAFLMFFSCVLFFAGSRIYVKVKPDGSPLTSVVQVI 249
Query: 252 VAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAI 311
VAAIKKR L+LPE+PWL+L NHIP INS LP+T QFR LDKAAI+T EDQI S+GS
Sbjct: 250 VAAIKKRKLELPEQPWLSLFNHIPARSINSNLPYTDQFRFLDKAAILTTEDQIMSNGSTA 309
Query: 312 NPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIP 371
PWRL S+Q+VEEVK L+RVIPIWASA++YY+ L+QQQTYVVFQALQS+R +GNT+FKIP
Sbjct: 310 TPWRLCSLQQVEEVKCLLRVIPIWASALLYYIGLIQQQTYVVFQALQSNRGLGNTNFKIP 369
Query: 372 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGII 431
AASYAIFSMLGLTIWIPIYDR+IVP L + TKKEGGITILQ+M +GM L I TM+ISGI+
Sbjct: 370 AASYAIFSMLGLTIWIPIYDRLIVPWLAKHTKKEGGITILQKMGVGMALGIVTMLISGIV 429
Query: 432 EDKRRSLALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 490
E++RR+LA+S P+G++ R +SSLS LWL PQL LIG SEAFTIIA++E YYKQFPEN
Sbjct: 430 EERRRALAISSPIGVDSRSNVNVSSLSALWLAPQLILIGISEAFTIIAQIELYYKQFPEN 489
Query: 491 MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALG 550
MRSIGGSL+FVG A+S+YL+ FLISMVH+ TK ++ GDWLPEDLNKGRLD FYYLVAALG
Sbjct: 490 MRSIGGSLSFVGVAVSSYLSAFLISMVHQITKKSACGDWLPEDLNKGRLDLFYYLVAALG 549
Query: 551 LLNFGFFLLCAKWYKYKGSGDG 572
++N G+F++CAKWYKYKG+ DG
Sbjct: 550 VINMGYFIVCAKWYKYKGN-DG 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734038|emb|CBI15285.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/585 (70%), Positives = 489/585 (83%), Gaps = 13/585 (2%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
MEKN K T DEP YRG K+MPF+IGNETFE LGT GTSSNLLVYLT +FNMKSI
Sbjct: 44 MEKNEKAG---TADEPNFEYRGLKAMPFIIGNETFENLGTVGTSSNLLVYLTAVFNMKSI 100
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA TLINIF GTTN TL+GAFL DTYFGRYKTLGFA+VASF+GMLV++LTA ISKLHPP
Sbjct: 101 TAVTLINIFYGTTNLGTLVGAFLCDTYFGRYKTLGFATVASFMGMLVITLTALISKLHPP 160
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C + +G C GPT WQ+AFL G GL+VIGA GIRPCNLAFGADQFNP TESGK+G++S
Sbjct: 161 HCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGADQFNPITESGKRGLSS 220
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C +FF+G+R+Y K++P+
Sbjct: 221 FFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLACVLFFMGTRIYVKLEPK 280
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP+T QFR LDK AI+TP
Sbjct: 281 GSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLPYTDQFRFLDKGAIITP 340
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
EDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVAL QQQTY VFQ+LQSD
Sbjct: 341 EDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVALAQQQTYTVFQSLQSD 400
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
R +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T KEGGIT+LQ+M +GM L
Sbjct: 401 RHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGKEGGITVLQKMGVGMFL 460
Query: 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEV 480
+I TM++S +E +RR+LAL AISS+SGLW IPQL+L+G SEAFT+IA+V
Sbjct: 461 SIVTMLVSAFVEHQRRTLALC----------AISSMSGLWFIPQLTLVGVSEAFTVIAQV 510
Query: 481 EFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLD 540
EF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T GA++G+WLPEDLNKGRLD
Sbjct: 511 EFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGAASGNWLPEDLNKGRLD 570
Query: 541 YFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 585
YFYYLVAALG++N G+FLLCAKWYKYKGS EV ME++ EK
Sbjct: 571 YFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESEK 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441051|ref|XP_004138297.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] gi|449477593|ref|XP_004155066.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/594 (69%), Positives = 495/594 (83%), Gaps = 12/594 (2%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
ME+N++ V DEP +NYRG K+MPFV+GNETFEKLGTTGTSSNLLVYLT +F+MK+I
Sbjct: 1 MERNNED--VNNLDEPNVNYRGVKAMPFVVGNETFEKLGTTGTSSNLLVYLTDVFHMKNI 58
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TATTL+NIF G+TNF+TL GAFL DTYFGRYKTLG+AS+AS +GM+VL+LTA I KLHPP
Sbjct: 59 TATTLMNIFHGSTNFSTLFGAFLCDTYFGRYKTLGYASIASLMGMVVLTLTATIEKLHPP 118
Query: 121 DCGNQDSG-ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179
DCG +G AC PT WQ+AFL GLGL+VIGAGGIRPCNLAFGADQFNPNT SGK GI
Sbjct: 119 DCGKGSAGGACLEPTSWQIAFLLFGLGLLVIGAGGIRPCNLAFGADQFNPNTASGKLGIN 178
Query: 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKP 239
SFFNWYYFTFTFAMMISLT+IVYVQ++VSWAWGL IPAF+MFLSCA+FF+GS +Y K++P
Sbjct: 179 SFFNWYYFTFTFAMMISLTIIVYVQTEVSWAWGLAIPAFLMFLSCALFFMGSWIYVKLEP 238
Query: 240 EGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMT 299
+GSP S ++V +AA+KKR L LP++ W +L NHIP N INSKLP+T QF DKAAI+T
Sbjct: 239 DGSPFTSVMRVLMAALKKRQLPLPDQQWPSLFNHIPSNSINSKLPYTNQFSFFDKAAIIT 298
Query: 300 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 359
ED+ KSDGSA +PW L S Q+VEEVK L+RVIPIW +AI+Y+VA QQQTY VFQALQS
Sbjct: 299 SEDKFKSDGSAADPWTLCSTQQVEEVKCLVRVIPIWGAAIIYHVATTQQQTYAVFQALQS 358
Query: 360 DRRV--GNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416
DRR+ GNTH FKIPAASY IF+M+GLTIWIP YDRI+VP L+R+T +EGGIT+LQ+M
Sbjct: 359 DRRLFFGNTHYFKIPAASYTIFTMIGLTIWIPFYDRILVPSLRRITAREGGITLLQKMGF 418
Query: 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQ-RRGAISSLSGLWLIPQLSLIGFSEAFT 475
GM +AI TM IS ++E KRR+LAL++P+ E RRG+ISS+S LWL+PQL+LIG SEAFT
Sbjct: 419 GMGIAIITMFISALVEQKRRNLALTQPLCEETGRRGSISSMSALWLVPQLTLIGLSEAFT 478
Query: 476 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 535
+IA+VEFYYK+FPENMRSIGGSL+FVG A+SNYL+GF++++VHR T G WLPEDLN
Sbjct: 479 VIAQVEFYYKEFPENMRSIGGSLSFVGLALSNYLSGFMVTVVHRLT----AGKWLPEDLN 534
Query: 536 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD-GAPEVAMEKLNPEKSPV 588
KGRLDYFY+LV+ L +N G+FLLC+KWYKYKGSG G E+ K EK+ V
Sbjct: 535 KGRLDYFYFLVSGLEAVNLGYFLLCSKWYKYKGSGSHGVDEMDFGKTEFEKTVV 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491749|ref|XP_002270558.2| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/575 (68%), Positives = 476/575 (82%), Gaps = 10/575 (1%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
MEKN + + T DEP++NYRG K+MP++IGNETFEKLG GT SNLL+Y+T +FNMKSI
Sbjct: 12 MEKNEE---IDTADEPEVNYRGVKAMPYIIGNETFEKLGAIGTLSNLLLYVTVVFNMKSI 68
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TATTLINIF+GTTNFATL GAFLSDTYFGRYKTLGFAS++SF+G+LV++LTAAI LHPP
Sbjct: 69 TATTLINIFNGTTNFATLPGAFLSDTYFGRYKTLGFASISSFMGLLVIALTAAIPNLHPP 128
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
+CG + C G T WQ+AFL TG GL+VIGAGGIRPCNLAFGADQFNP TESGK+GI S
Sbjct: 129 ECGK--ASRCIGATAWQMAFLLTGFGLLVIGAGGIRPCNLAFGADQFNPKTESGKRGIDS 186
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FT TFA M+SLT IVYVQS VSW GLGIPA +M LSC +FF+G+++Y KVKP
Sbjct: 187 FFNWYFFTLTFAQMVSLTAIVYVQSKVSWGIGLGIPALLMLLSCVVFFMGTKIYVKVKPT 246
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSP+ S QV V A+KKR LKLPE+PWL+L ++IP N INSKLP+T QFR LDKAA+++P
Sbjct: 247 GSPMTSVAQVIVVAVKKRRLKLPEQPWLSLFSYIPPNSINSKLPYTDQFRFLDKAAVLSP 306
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
EDQ+ DGSA PWRL SMQ+VEEVK ++RVIPIW+SAI+Y+ A+VQQ TY VFQALQS+
Sbjct: 307 EDQLNPDGSAAYPWRLCSMQQVEEVKCIMRVIPIWSSAIIYHCAIVQQHTYAVFQALQSN 366
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
R VGN+ F+IPAASY +FSML LTIW+PIYDRI+VP L+R+T KE GITILQR+ IG+ L
Sbjct: 367 RYVGNSKFQIPAASYTVFSMLSLTIWVPIYDRIVVPFLRRITGKEAGITILQRIGIGIFL 426
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
++ T ++S ++E+ RR +RP +G+ RRG ISS+SG WLIPQL+L G +EAFT I +
Sbjct: 427 SVLTSLVSALVEEWRR----TRPIIGVYPRRGGISSMSGFWLIPQLTLAGLAEAFTAIGQ 482
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
VEFYYKQFPENMRSI GS F G A S+Y++G L+S+VHR T GA TG+WLPEDLNKGRL
Sbjct: 483 VEFYYKQFPENMRSIAGSFFFCGMAASSYVSGLLVSIVHRTTAGAKTGNWLPEDLNKGRL 542
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 574
DYFYYLVA+LG++N G+FL+CAKWY YKGS P
Sbjct: 543 DYFYYLVASLGVINLGYFLVCAKWYTYKGSYQQHP 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059970|ref|XP_002300021.1| predicted protein [Populus trichocarpa] gi|222847279|gb|EEE84826.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/579 (66%), Positives = 477/579 (82%), Gaps = 3/579 (0%)
Query: 4 NSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITAT 63
N K ++DEP++ Y G K+MPFVIGNETFEKLGT G+S+NL VYLTT+FNMKS+ AT
Sbjct: 20 NLKEEKTTSNDEPEIKYGGIKAMPFVIGNETFEKLGTVGSSTNLAVYLTTVFNMKSVKAT 79
Query: 64 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123
TL+N+F+GT+N A L+GA+LSDTYFGRY TLGFASV SFLGM+VL LTAAIS +HPP C
Sbjct: 80 TLLNVFNGTSNLAPLIGAYLSDTYFGRYWTLGFASVFSFLGMVVLMLTAAISTMHPPKCA 139
Query: 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183
C GPT WQLAFL +G +VIGAGGIRPCNLAFGADQFNPNTESGK+GITSFFN
Sbjct: 140 --PGAVCAGPTSWQLAFLLSGFAFLVIGAGGIRPCNLAFGADQFNPNTESGKRGITSFFN 197
Query: 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSP 243
WYYFTFTFA+MIS+T IVYVQS+VSWA GLGIPAF+M LSC MFF+G+R+Y VKP+GSP
Sbjct: 198 WYYFTFTFAVMISVTGIVYVQSNVSWAIGLGIPAFLMLLSCVMFFVGTRIYVIVKPQGSP 257
Query: 244 LASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQ 303
+ S VQV VAA KKR LK+P+ ++L N+IP INSKLP T QFRCLDKAAI+T E+Q
Sbjct: 258 ITSIVQVLVAATKKRGLKVPDNSAMSLFNYIPAKSINSKLPSTEQFRCLDKAAIITDENQ 317
Query: 304 IKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRV 363
I DG+A NPW+L S+Q+VEEVK L+R+IP+W+++I+Y + L+QQQTY VFQALQ DRR+
Sbjct: 318 INLDGTAANPWKLCSVQQVEEVKCLLRIIPVWSTSILYQIPLLQQQTYAVFQALQMDRRL 377
Query: 364 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423
G+T FK+PAA+Y IF+ML LTIWIP+YDRIIVP LQRLT K+GGIT+LQRM IGMILAI
Sbjct: 378 GSTSFKVPAATYIIFTMLTLTIWIPLYDRIIVPFLQRLTGKDGGITLLQRMGIGMILAIL 437
Query: 424 TMIISGIIEDKRRSLALSR-PVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEF 482
++SG++E+ RR +AL+R P+G + G+ISS+SG+WLIPQL+L G SE F IA++EF
Sbjct: 438 CTVVSGLVEENRRHIALTRPPLGQTNKGGSISSMSGMWLIPQLALSGLSEGFNYIAQIEF 497
Query: 483 YYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYF 542
YYKQFPENMRSI GS F G A++NYL+G L+S+VH+ T G+ TGDWL +DLNKG+LDYF
Sbjct: 498 YYKQFPENMRSIAGSAFFAGGALANYLSGVLVSIVHQITSGSKTGDWLDDDLNKGKLDYF 557
Query: 543 YYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKL 581
YY++A LG+LNFG+FLLCAKWY+YK + D +A + +
Sbjct: 558 YYVIAGLGILNFGYFLLCAKWYRYKDADDSTVGMATKGI 596
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452684|ref|XP_002276806.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera] gi|296087781|emb|CBI35037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/591 (67%), Positives = 478/591 (80%), Gaps = 9/591 (1%)
Query: 1 MEKNSKTAVVATDDEPQ-LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKS 59
MEK K + +D+ P+ +NYRG K+MPF+IGNETFEKLGT GTSSNL+VYLT++FN+KS
Sbjct: 1 MEKEEKA--ILSDESPEVINYRGVKAMPFIIGNETFEKLGTIGTSSNLMVYLTSVFNIKS 58
Query: 60 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119
+TA TLINIF+GTTN A LLGAFLSD+YFGR+KTL AS+ S GM V+ LTAAISKLHP
Sbjct: 59 VTAATLINIFNGTTNMAPLLGAFLSDSYFGRFKTLALASICSLSGMTVIMLTAAISKLHP 118
Query: 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179
P CG +++ C GPT QLAFL TG GL++IGAGGIRPCNLAFGADQFNP TESGK+GI
Sbjct: 119 PHCGTKETELCRGPTTSQLAFLLTGFGLLIIGAGGIRPCNLAFGADQFNPATESGKRGIN 178
Query: 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKP 239
SFFNWYYFTFTFA+MIS T IVYVQS+VSWA GLGIP+ +MF+SC +FF GSR+Y KVKP
Sbjct: 179 SFFNWYYFTFTFAVMISGTFIVYVQSNVSWALGLGIPSCLMFVSCVLFFAGSRIYVKVKP 238
Query: 240 EGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMT 299
GSPL QV VAA KKR+ KLP+ P L+L +H+P N +NSKLPHT QFR LDK+AI+T
Sbjct: 239 RGSPLTGVAQVLVAASKKRYFKLPDHPELSLFSHVPTNYMNSKLPHTDQFRFLDKSAIIT 298
Query: 300 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 359
EDQI +DGSA NPWRL SMQ+VEEVK L+RVIPIWAS+I+Y+VA+VQQ TY V QALQS
Sbjct: 299 MEDQINTDGSASNPWRLCSMQQVEEVKCLMRVIPIWASSIIYHVAIVQQHTYAVLQALQS 358
Query: 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 419
DR +G+ F++PAASY+IFSML LTIWIPIYDRI++P L +LT KE GIT+LQRM G++
Sbjct: 359 DRHLGS--FEVPAASYSIFSMLSLTIWIPIYDRIVIPFLHKLTGKEDGITLLQRMGTGIV 416
Query: 420 LAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIA 478
L++ TM++S +IE++RR+ A +RP +G + GAISS+S WLIPQL L G SEAF I
Sbjct: 417 LSVATMLVSAVIEEQRRTFARTRPTIGTAPKGGAISSMSASWLIPQLILAGLSEAFNSIG 476
Query: 479 EVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-KGASTGDWLPEDLNKG 537
++EFYYKQFPENMRSI GS F G A SNYL+GFL+S+VH+ T GA GDWLPEDLNKG
Sbjct: 477 QIEFYYKQFPENMRSIAGSFFFCGIAGSNYLSGFLVSVVHQITLNGARGGDWLPEDLNKG 536
Query: 538 RLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 588
+LD FYY++AALG +NF +FL+C+KWY+YKG GD EVAME K V
Sbjct: 537 KLDCFYYMIAALGAVNFAYFLVCSKWYRYKG-GDRV-EVAMETKGSRKHVV 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540889|ref|XP_002511509.1| nitrate transporter, putative [Ricinus communis] gi|223550624|gb|EEF52111.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/586 (63%), Positives = 471/586 (80%), Gaps = 2/586 (0%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
ME N K A D+EP +NYRGWK+MPF+IGNETFEKLG GT +NLL+YLTT+FNMKSI
Sbjct: 15 MESNEKDDATAHDEEPNINYRGWKAMPFIIGNETFEKLGAIGTLANLLIYLTTVFNMKSI 74
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA T+I +F+GT N TL+GAFL DTYFGRY TLGFA++ SFLG+L++ LTA ISKLHP
Sbjct: 75 TAATIITVFNGTANLGTLVGAFLCDTYFGRYNTLGFATITSFLGLLMIDLTAVISKLHPA 134
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C +++S C GPTP Q+A L+ G LM+IGAGG+RPCNLAFGADQFNP TESGK+GI S
Sbjct: 135 QC-DKESATCKGPTPGQMAVLYAGFALMIIGAGGVRPCNLAFGADQFNPKTESGKKGINS 193
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FTFTFA M+SLT+IVYVQ++VSWA GL IPA +M ++C +F++GSR+Y KVK
Sbjct: 194 FFNWYFFTFTFAQMVSLTLIVYVQANVSWAIGLAIPAILMLIACVLFYMGSRIYVKVKAC 253
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSP+ S QV V AIKKR LK E+PWL L N IP IN++L +T QFR LDKAAI T
Sbjct: 254 GSPITSVAQVIVVAIKKRRLKPVEQPWLFLFNFIPPKSINAQLSYTDQFRFLDKAAIKTL 313
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
D+I DGS +NPW+L S+Q+VEEVK LIRV+PIW + +++Y+A+VQQ TY VFQA+QSD
Sbjct: 314 RDEINPDGSPVNPWKLCSLQQVEEVKCLIRVLPIWVAGVIFYMAIVQQNTYAVFQAVQSD 373
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G++ F+IPAASY +F ML LTI+IPIYDRI+VP +Q++T KEGGIT+LQR+ IG +
Sbjct: 374 RRLGSSEFEIPAASYTVFLMLSLTIFIPIYDRILVPFVQKVTGKEGGITLLQRIGIGTVF 433
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
+ +MI+S ++E++RR++AL++P +G+ RRGAISS+SGLWL+PQL+L G +EAF I
Sbjct: 434 STASMIVSALVEEQRRTIALTKPTLGIAPRRGAISSMSGLWLVPQLTLAGLAEAFGAIGL 493
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
VEFYYKQFPENMRSI GSL F G A ++YL+ LI++VHR T+ +TG+WL EDLNKGRL
Sbjct: 494 VEFYYKQFPENMRSIAGSLFFCGMAGASYLSSLLITVVHRTTEKTATGNWLAEDLNKGRL 553
Query: 540 DYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 585
DY+YYL+AALG+LNFG+FL+CAKWYKYKG E+ EK EK
Sbjct: 554 DYYYYLIAALGVLNFGYFLICAKWYKYKGGNAVTIEMTREKKPSEK 599
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.964 | 0.920 | 0.573 | 1.2e-184 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.957 | 0.959 | 0.573 | 1.5e-179 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.913 | 0.866 | 0.467 | 2.8e-137 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.914 | 0.934 | 0.445 | 2.9e-126 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.948 | 0.936 | 0.395 | 5.7e-107 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.908 | 0.936 | 0.387 | 7.5e-105 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.904 | 0.933 | 0.377 | 5.4e-102 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.865 | 0.910 | 0.385 | 1.1e-101 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.909 | 0.914 | 0.374 | 3.4e-100 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.867 | 0.864 | 0.396 | 1.3e-98 |
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1791 (635.5 bits), Expect = 1.2e-184, P = 1.2e-184
Identities = 328/572 (57%), Positives = 430/572 (75%)
Query: 5 SKTAVVATDDEPQ----LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
S TAV + +++ Q + YRGWK MPF+IGNETFEKLG GT SNLLVYLT +FN+KSI
Sbjct: 25 SVTAVDSVEEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSI 84
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA T+IN FSGT NF T + AFL DTYFGRYKTL A +A FLG V+ LTAA+ +LHP
Sbjct: 85 TAATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPA 144
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
CG C GP+ Q+AFL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+GI S
Sbjct: 145 ACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDS 204
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FTFTFA ++SLT++VYVQS+VSW GL IPA +MFL+C +FF G +LY K+K
Sbjct: 205 FFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKAS 264
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSPLA QV AIKKR LK ++PWL L+N+ P NSKL +T QFR LDKAAI+TP
Sbjct: 265 GSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILTP 324
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
ED+++ DG +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ + QQ TY VFQALQSD
Sbjct: 325 EDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSD 384
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G+ F IPAA+Y +F M G+T++I +YDR++VP ++R+T + GIT+LQR+ G+
Sbjct: 385 RRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFF 444
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
A +++++G +E++RR+ AL++P +G+ R+G ISS+S +WLIPQLSL G +EAF I +
Sbjct: 445 ATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQ 504
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
+EFYYKQFPENMRS GS+ +VG +S+YL FLI+ VHR T+ +S G+WL EDLNKGRL
Sbjct: 505 MEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRL 564
Query: 540 DYFYYLVAAXXXXXXXXXXXCAKWYKYKGSGD 571
D FY+++A ++WY+YKGS D
Sbjct: 565 DLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
Identities = 326/568 (57%), Positives = 424/568 (74%)
Query: 1 MEKNSKTAVVATDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI 60
+EK K +A DDE ++ YRGWK MPF+IGNETFEKLG G+SSNL++YLTT+FNMKSI
Sbjct: 3 VEKTEKN--IAEDDESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSI 60
Query: 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120
TA ++NI+ GT+NF T++ AFL D+YFGRYKTL FA +A FLG + + LTA I LHP
Sbjct: 61 TAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPA 120
Query: 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180
C + C GP+ Q+ FL + L+VIGAGGIRPCNL FGADQF+P T+ GK+GI S
Sbjct: 121 QCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIES 180
Query: 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 240
FFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C +FF GS+LY KVK
Sbjct: 181 FFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKAS 240
Query: 241 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP 300
GSP+ S +V V AIKKR LK P P L+N+I + NSKL HT QFR LDK+AI T
Sbjct: 241 GSPIHSITRVIVVAIKKRRLK-PVGP-NELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQ 298
Query: 301 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 360
+D++ DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A +QQ TY +FQ+LQSD
Sbjct: 299 DDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSD 358
Query: 361 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420
RR+G F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++GGIT LQR+ G+ L
Sbjct: 359 RRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFL 418
Query: 421 AIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 479
I +M++S I+E RR +AL++P +GL R+GAISS+SG+WLIPQL L+G ++A + +
Sbjct: 419 CITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQ 478
Query: 480 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539
+EFYYKQFPENMRS GSL + G +++YL+ FL+S VH T+G S G WLPEDLNKGRL
Sbjct: 479 MEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRL 538
Query: 540 DYFYYLVAAXXXXXXXXXXXCAKWYKYK 567
+YFY+LVA + WY+YK
Sbjct: 539 EYFYFLVAGMMTLNLAYFLLVSHWYRYK 566
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 257/550 (46%), Positives = 369/550 (67%)
Query: 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGA 81
GW+++ F++GNET E+LG+ G +N +VYLT +F+++ + A +INI+SG TN L+GA
Sbjct: 54 GWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGA 113
Query: 82 FLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 141
++SDTY GR+KT+ FAS A+ LG++ ++LTA+ +LHP C +QD +C GP Q+ L
Sbjct: 114 YISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVL 173
Query: 142 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201
GL + +G+GGIRPC++ FG DQF+ TE G +G+ SFFNWYY TFT ++I+ TV+V
Sbjct: 174 LLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVV 233
Query: 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261
Y+Q VSW G IP +M L+ MFF G + Y VKPEGS + QV VAA KKR LK
Sbjct: 234 YIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLK 293
Query: 262 LPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSM 319
LP E T+ + P K+ + SKL + QFRCLDKAA++ E + +G + WRL S+
Sbjct: 294 LPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI-EGDLTPEGPPADKWRLCSV 352
Query: 320 QKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFS 379
Q+VEEVK LIR++PIW++ I+ A+ Q T+ V QAL+ DR +G F+IPA S ++ S
Sbjct: 353 QEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLG-PKFEIPAGSLSVIS 411
Query: 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR--S 437
+L + I++P YDR+ VP ++R+T + GIT+LQR+ G++ AIF+MI++GI+E RR S
Sbjct: 412 LLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRS 471
Query: 438 LALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGS 497
+ P G+ + +S WL PQL L+G EAF II ++EF+ QFPE+MRSI S
Sbjct: 472 INAGDPTGM-------TPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANS 524
Query: 498 LAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXX 557
L + FA S+YL+ FL+++VH+F+ G DWL ++LN G+LDYFYYL+A
Sbjct: 525 LFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYF 584
Query: 558 XXCAKWYKYK 567
CA+ Y+YK
Sbjct: 585 WYCARGYRYK 594
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 248/557 (44%), Positives = 352/557 (63%)
Query: 16 PQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNF 75
P+ GW+++ F++GNET EKLG+ G S+N ++YL +F+M+ + A + ++ G TNF
Sbjct: 11 PEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNF 70
Query: 76 ATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 135
A LLGA +SD Y GR+KT+ +AS+ S LG++ ++LTA + +LHPP C N C P
Sbjct: 71 APLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNK 130
Query: 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195
QL LF GLG + IG+GGIRPC++ FG DQF+ TE G +G+ SFFNWYY T T ++
Sbjct: 131 LQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIF 190
Query: 196 SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAI 255
S TV+VY+Q+ VSW G IP +M + +FF+G R Y VKPEGS + +V VAA
Sbjct: 191 SHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAAR 249
Query: 256 KKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINP 313
KKR LK+ T + P K + SKLP T QF+ LDKAA++ D + S+G N
Sbjct: 250 KKRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVILDGD-LTSEGVPANK 308
Query: 314 WRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAA 373
WRL S+Q+VEEVK LIRV+P+W++ I+ VA+ Q T++VFQA + DR +G HF+IPAA
Sbjct: 309 WRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMG-PHFEIPAA 367
Query: 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIED 433
S + S + + IW+PIY+ ++VP L R+ K +T+LQRM IG++ AI +M +G +E
Sbjct: 368 SITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRMGIGIVFAILSMFTAGFVEG 425
Query: 434 KRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS 493
RR+ A ++ +S WL L L+G E+F I +EF+ QFPE+MRS
Sbjct: 426 VRRTRATE-----------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRS 474
Query: 494 IGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXX 553
I SL + FA +NYL+ L++ VH+ + DWL +DL++G+LDYFYYL+A
Sbjct: 475 IANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVN 534
Query: 554 XXXXXXCAKWYKYK-GS 569
CA Y+YK GS
Sbjct: 535 LVYFWYCAHRYQYKAGS 551
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 228/577 (39%), Positives = 344/577 (59%)
Query: 1 MEKNSKTAVVATDDEPQLNYR------GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI 54
ME+ SK + +++E QL+ R G +MPF+ NE EKL G +N++ YLTT
Sbjct: 1 MEEQSKNKI--SEEEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQ 58
Query: 55 FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114
++ A + F+GT++ LLGAF++D++ GR+ T+ FAS+ +GM +L+++A I
Sbjct: 59 LHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAII 118
Query: 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESG 174
L PP C ++ C QL+ L+ L L +G+GGIRPC +AFGADQF+ + +
Sbjct: 119 PTLRPPPCKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQ 176
Query: 175 KQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234
++FNWYYF A+++++TV+V++Q +V W GLGIP MFLS F G +LY
Sbjct: 177 TTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLY 236
Query: 235 AKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNH---IPKNCINSKLPHTGQFRC 291
+ P GSP +QV VAA +KR L++ +P L N P + + KL HT
Sbjct: 237 RHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPIS-LGGKLTHTKHMSF 295
Query: 292 LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTY 351
LDKAAI+T ED +K G N WRLS++ +VEE+K +IR+ PI AS I+ A QQ T+
Sbjct: 296 LDKAAIVTEEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTF 354
Query: 352 VVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITIL 411
+ QA +R + N+ F+IPA S ++F+ + + I YDR+ V ++ T E GIT L
Sbjct: 355 SLQQAKTMNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFL 413
Query: 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFS 471
RM IG +++I +++G +E KR+S+A+ GL + I +S LWLIPQ L G +
Sbjct: 414 HRMGIGFVISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWLIPQYGLHGVA 471
Query: 472 EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 531
EAF I +EF+Y Q PE+MRS +L ++ +I NY++ L+++VH+F+ +WLP
Sbjct: 472 EAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLP 531
Query: 532 ED-LNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 567
++ LN+GRL+YFY+L+ CAK Y YK
Sbjct: 532 DNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 212/547 (38%), Positives = 320/547 (58%)
Query: 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAF 82
WK+ F++GNE E+L G +NL+ YL + N + TA + +SGT L+GAF
Sbjct: 28 WKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAF 87
Query: 83 LSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142
++D Y GRY T+ GM +L+L+A++ L P +C N D+ C P Q A F
Sbjct: 88 IADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNC-NADT--CH-PNSSQTAVFF 143
Query: 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202
L ++ +G GGI+PC +FGADQF+ N E+ K +SFFNW+YF+ +I+ TV+V+
Sbjct: 144 VALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVW 203
Query: 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262
+Q +V W WG G+P M ++ FF GSR Y +P GSPL QV VAA +K +K+
Sbjct: 204 IQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKV 263
Query: 263 PEEPWLTLHNHIPKNCINS--KLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ 320
PE+ L ++ I KL HT + DKAA+ + D IK DG +NPWRL S+
Sbjct: 264 PEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSVT 321
Query: 321 KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSM 380
+VEE+K +I ++P+WA+ IV+ Q T V Q D+ +G +F+IP+AS ++F
Sbjct: 322 QVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGK-NFEIPSASLSLFDT 380
Query: 381 LGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 440
+ + W P+YD+ I+P ++ T+ E G T LQRM IG++++IF MI +G++E R
Sbjct: 381 VSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVK 440
Query: 441 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500
+ +Q++ +S W IPQ LIG +E FT I ++EF+Y Q P+ MRS+ +L+
Sbjct: 441 THNA-YDQKQ---IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 496
Query: 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXC 560
A+ NYL+ L+++V + TK W+P++LN+G LDYF+YL+A
Sbjct: 497 TTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWI 556
Query: 561 AKWYKYK 567
+K YKYK
Sbjct: 557 SKRYKYK 563
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 207/548 (37%), Positives = 320/548 (58%)
Query: 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAF 82
WK+ F++G E E+L G S+NL+ YL NM++++A+ ++ +SGT L+GAF
Sbjct: 29 WKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAF 88
Query: 83 LSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142
++D Y GRY T+ V GM +L+++A++ L P C + A G T A F
Sbjct: 89 IADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETCHATAGQT----AITF 143
Query: 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202
L L+ +G GGI+PC +FGADQF+ E K+ +SFFNW+YF MI+ +V+V+
Sbjct: 144 IALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVW 203
Query: 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262
+Q +V W WGLG+P M ++ FF GS Y KP GSPL +QV VA+ +K +K+
Sbjct: 204 IQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKI 263
Query: 263 PEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSA-INPWRLSSM 319
PE+ L N ++ I + KL HT DKAA+ T D + G+A + W+L ++
Sbjct: 264 PEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESD---NKGAAKSSSWKLCTV 320
Query: 320 QKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFS 379
+VEE+K LIR++PIWA+ IV+ Q T V Q D+ +G +FKIP+AS ++F
Sbjct: 321 TQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFD 379
Query: 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439
L + W P+YD++IVP ++ T E G T LQR+ IG++++IF+M+ +GI+E R +
Sbjct: 380 TLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYV 439
Query: 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA 499
+ + E+ ++ W +PQ L+G +E FT I ++EF+Y Q P+ MRS+ +L+
Sbjct: 440 QTHNLYNEET----IPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS 495
Query: 500 FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXX 559
A NYL+ FL+++V + T+ W+ ++LN G LDYF++L+A
Sbjct: 496 LTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLW 555
Query: 560 CAKWYKYK 567
AKWY YK
Sbjct: 556 IAKWYTYK 563
|
|
| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 205/532 (38%), Positives = 330/532 (62%)
Query: 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGA 81
GW+++ ++I NE+FEKL + NL VYL T +N+ + +INI+ G+ N TL GA
Sbjct: 20 GWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGA 79
Query: 82 FLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG-PTPWQLAF 140
F+SD Y GR+ TL S+ASF+GM + +LTAA+ L P C D C P WQL
Sbjct: 80 FVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC--IDPSNCSNQPAKWQLGV 137
Query: 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200
LF+GLGL+ IGAGG+RPCN+AFGADQF+ +T+ GK + +FFNW+YF+FT A++I+LT +
Sbjct: 138 LFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALVIALTGV 197
Query: 201 VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHL 260
VY+Q+++SW G IP + LS F +G Y K EGS A V+V AA KKR +
Sbjct: 198 VYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRKV 257
Query: 261 KLPEEPWLTL---HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLS 317
K + + ++ P + K H + R DKA+I+T +++ DG+A WRL
Sbjct: 258 KPGSDITFYIGPSNDGSPTTLVRDK--H--RLRFFDKASIVTNPNELNEDGNAKYKWRLC 313
Query: 318 SMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 377
S+Q+V+ +K + ++P+W + I ++ QQ Y + QA+Q D+ G +F++PA +
Sbjct: 314 SVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVPAGWMNL 373
Query: 378 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRS 437
SM+ L IWI +Y+ +I+P ++++T ++ +T+ R+ I ++ I MI++G E KRR+
Sbjct: 374 VSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--VMGIICMIVAGFQEKKRRA 431
Query: 438 LALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496
AL + G+ +S +S + L+PQ +L G +EAF+ +A +EF + PE+MR++ G
Sbjct: 432 SAL--------KNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAG 483
Query: 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE-DLNKGRLDYFYYLVA 547
++ F+ +I++Y+ LI+++ T+ WL + DLNK RL+ +++++A
Sbjct: 484 AIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFFIIA 534
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 205/547 (37%), Positives = 315/547 (57%)
Query: 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAF 82
WK+ PF++GNE E+L G + NL+ YLTT + +++A T + + GT L+GA
Sbjct: 45 WKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAV 104
Query: 83 LSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142
L+D Y+GRY T+ S F+GM L+L+A++ L P +C CP TP Q A F
Sbjct: 105 LADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD---FCPSATPAQYAMFF 161
Query: 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202
GL L+ +G GGI+PC +FGADQF+ + SFFNW+YF+ ++S +++V+
Sbjct: 162 GGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVW 221
Query: 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262
+Q + W G GIP M L+ A FF G+ LY KP GSP+ QV VA+ +K +K+
Sbjct: 222 IQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKV 281
Query: 263 PEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ 320
PE+ L + I + K+ HT + LDKAA+++ E++ KS G N WRL ++
Sbjct: 282 PEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS-EEESKS-GDYSNSWRLCTVT 339
Query: 321 KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSM 380
+VEE+K+LIR+ PIWAS I++ Q T V Q + ++G+ F++P A+ F
Sbjct: 340 QVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGS--FQLPPAALGTFDT 397
Query: 381 LGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 440
+ IW+P+YDR IVP ++ T + G T +QRM IG+ +++ M + I+E R L +
Sbjct: 398 ASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIR--LHM 455
Query: 441 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500
+ +GL + GA +S LW IPQ ++G +E F I ++EF+Y Q P+ MRS+ +LA
Sbjct: 456 ANDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALAL 514
Query: 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXC 560
+ A+ NYL+ ++++V FT W+ ++LN G LDYF++L+A
Sbjct: 515 LTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFS 574
Query: 561 AKWYKYK 567
A YK K
Sbjct: 575 AARYKQK 581
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 210/529 (39%), Positives = 312/529 (58%)
Query: 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAF 82
WK+ PF++GNE E+L G + NL+ Y T+ + +++A + + I+ GT L+GA
Sbjct: 56 WKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAV 115
Query: 83 LSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142
++D+Y+GRY T+ S F+GM +L+L+A++ L P C + C T Q A F
Sbjct: 116 IADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFF 175
Query: 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202
TGL L+ +G GGI+PC +FGADQF+ + SFFNW+YF+ IS T++V+
Sbjct: 176 TGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVW 235
Query: 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262
VQ +V W G IP M +S A FF+G+ LY KP GSP+ QV VAA +K L L
Sbjct: 236 VQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL 295
Query: 263 PEEPWLTLHNHIPKNCI---NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSM 319
PE+ L+ KN + + K+ HT ++ LDKAA+++ E + KS G+ NPW+L ++
Sbjct: 296 PEDISF-LYETREKNSMIAGSRKIQHTDGYKFLDKAAVIS-EYESKS-GAFSNPWKLCTV 352
Query: 320 QKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFS 379
+VEEVK LIR+ PIWAS IVY V Q T V Q +R + + F+IP AS+ +F
Sbjct: 353 TQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRS--FEIPPASFGVFD 410
Query: 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439
L + I IPIYDR +VP ++R T G+T LQRM IG+ L++ ++ + I+E R LA
Sbjct: 411 TLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA 470
Query: 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA 499
++S W IPQ L+G +E F I VEF+Y + P+ MRS+ +LA
Sbjct: 471 QD-----------FVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALA 519
Query: 500 FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAA 548
+ A+ +YL+ ++++V FT W+P+DLNKG LDYF++L+ +
Sbjct: 520 LLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LV10 | PTR53_ARATH | No assigned EC number | 0.5804 | 0.9642 | 0.9204 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 588 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-55 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-27 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-19 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 2e-05 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-55
Identities = 116/422 (27%), Positives = 181/422 (42%), Gaps = 59/422 (13%)
Query: 91 YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 150
+KT+ S+ +G ++L+L A P +P Q+A + GL L+ +
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAI----------------PPSLSPVQVALFYIGLYLIAL 44
Query: 151 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 210
G GGI+P AFGADQF+ + + FF+W+YF+ +I+ + Y+Q +V +
Sbjct: 45 GTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 211 WGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV--QVFVAAIKKRHLKLPE-EPW 267
G G+PA M L+ +F LGSR Y K P G + + AA K R L+LP+ W
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 268 LT-LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ-KVEEV 325
L K I+ HT + W L Q V +
Sbjct: 162 LYWALEKYNKRSISQTKVHTR-VAVIFIPLPKF--------------WALFDQQGSVWLL 206
Query: 326 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTI 385
+ ++ ++PIWA I+ Q T +V Q DR + F+IP AS+ F+ L + I
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPL-FEIPPASFQSFNPLAVLI 265
Query: 386 WIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 445
+PI D ++ P L+ + G+T+ QR +GM + I ++ I+E KR A
Sbjct: 266 LLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYA------ 315
Query: 446 LEQRRGAISSLSGLWLIPQLSLIGFSEAFT-IIAEV---EFYYKQFPENMRSIGGSLAFV 501
A+ S W +P L E F + EF P +M S+ L+
Sbjct: 316 -----AALGLTSPGWTVPLFILWSLPELFISGVGLAGALEFAPDALPSSMMSLWTLLSAA 370
Query: 502 GF 503
Sbjct: 371 AA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 101/396 (25%), Positives = 171/396 (43%), Gaps = 71/396 (17%)
Query: 47 LLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106
L++YL TAT + + F+ L+GA ++D++ G++KT+ + S+ +G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 166
+ SL A G P A GL L+ +G GGI+PC AFG DQ
Sbjct: 70 LASLGAV-----------PSLGH-----PLHDALSLVGLALIALGTGGIKPCVSAFGGDQ 113
Query: 167 FNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-------WAWGLGIPAFM 219
F E FF+++YF + S + ++ DV + G+P +
Sbjct: 114 F---EERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170
Query: 220 MFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI 279
M L+ +F +GS++Y K P G+ ++ ++ V A+KKR + E W LH
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR-FRTRSEDWPRLHW------- 222
Query: 280 NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAI 339
LD AA I+S K L+RV+ ++
Sbjct: 223 ------------LDWAAPKYLIRMIRS------------------TKRLLRVLFLFIPLP 252
Query: 340 VYYVALVQQQTYVVFQALQSDRRVGNT-HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRL 398
+++ AL QQ LQ+ R G+ F I + L + I +PI+D ++ P L
Sbjct: 253 MFW-ALFDQQGSR--WTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPAL 309
Query: 399 QRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDK 434
+ + T L++MA+GM+LA ++ ++++K
Sbjct: 310 AKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 3e-19
Identities = 82/497 (16%), Positives = 164/497 (32%), Gaps = 85/497 (17%)
Query: 29 VIGNETFEKLGTTGTSSNLLVYLTTIF----NMKSITATTLINIFSGTTNFATLLGAFLS 84
+ E +E+ G + L++YL AT L + + ++G +L+
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 85 DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTG 144
D G +T+ ++ +G LVL++++ L+ G
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSG----------------------PGGLYIG 123
Query: 145 LGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 204
L L+++G G +P + + + + G F +Y +I+ + +
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAPIITGLLA 179
Query: 205 SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA----KVKPEGSPLASTVQVFVAAIKKRHL 260
+ W G G+ A M + +F LG R P + V + +
Sbjct: 180 INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLV----V 235
Query: 261 KLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ 320
+ L N L +I+ S +
Sbjct: 236 MILAALLTLLLNQ--NTFSGVLL----------VISILIAIIYFAE--------AFRSPK 275
Query: 321 KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTH----FKIPAASYA 376
+E + L+ IP++ A++++ + +Q L +DR V F++P A +
Sbjct: 276 VFDERRRLLAAIPLFLFAVIFWA--LYEQMGSSL-NLYADRNV--NRQIFGFEVPPAWFQ 330
Query: 377 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR 436
+ + ++ PI + L + + + A+G+ILA +I +
Sbjct: 331 SLNPFFIILFSPILAALWTK----LGRGNKQPSTPIKFALGLILAGLGFLILLL------ 380
Query: 437 SLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496
G +S WL+ L F E F + K P ++S
Sbjct: 381 --------AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIM 432
Query: 497 SLAFVGFAISNYLNGFL 513
++ F+ A L G +
Sbjct: 433 AMWFLTVAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 29/215 (13%)
Query: 33 ETFEKLGTTGTSSNLLVYL--TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR 90
E +E+ G L VYL A + +S T +G + D +G
Sbjct: 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78
Query: 91 YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 150
KT+ + LG +L P +F GLG + +
Sbjct: 79 KKTMVLGGIVLMLGHFML-------------------AMSIYP-----DLIFYGLGTIAV 114
Query: 151 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 210
G+G + + + + G + F Y + IS + + + +
Sbjct: 115 GSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIGSFISPLLAGVIAENYGYH 171
Query: 211 WGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA 245
G + A M + FF G + + PL+
Sbjct: 172 VGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLS 206
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 43/248 (17%)
Query: 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFL 83
+++ +V+ + +E G + L++YLT A L + + +LG FL
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 84 SDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFT 143
+D G + ++ +G +VL S++HP +FL+
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVL----GASEIHP-------------------SFLYL 105
Query: 144 GLGLMVIGAGGIRP---CNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200
L ++V G G + C L + +P + G F+ Y +I+
Sbjct: 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG-------FSLMYAAGNVGSIIAPIAC 158
Query: 201 VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHL 260
Y Q + SWA G G+ A M +F G+R + T V ++ +
Sbjct: 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH----------TRGVNKKVLRATNF 208
Query: 261 KLPEEPWL 268
LP WL
Sbjct: 209 LLPNWGWL 216
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 31/189 (16%)
Query: 41 TGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100
G S L L + + A +++ FS +LL +LSD FGR + L +
Sbjct: 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLL 73
Query: 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNL 160
LG L+L+ L L G L+ +G G + P
Sbjct: 74 FALGSLLLAFA------------------------SSLWLLLVGRFLLGLGGGALYPAAA 109
Query: 161 AFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMM 220
A A+ F P + F ++ + + + W W I A +
Sbjct: 110 ALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163
Query: 221 FLSCAMFFL 229
L +
Sbjct: 164 LLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 45/219 (20%), Positives = 63/219 (28%), Gaps = 31/219 (14%)
Query: 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97
LG + L +YL + L+ FS A L LSD FGR + L
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD-RFGRRRVLLIG 68
Query: 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRP 157
+ LG+L+L + L L L +G G + P
Sbjct: 69 LLLFALGLLLLLFAS------------------------SLWLLLVLRVLQGLGGGALFP 104
Query: 158 CNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 217
A AD F P E G+ F + + + S W I A
Sbjct: 105 AAAALIADWF-PPEERGR-----ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 218 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIK 256
+ L+ + L P V A K
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 26/169 (15%)
Query: 50 YLTTIFNMKSITATTLINIFSGTTNFA-TLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108
Y TIF ++ + L+ I G NF T + FL D FGR L + + LVL
Sbjct: 275 YSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVD-RFGRRPLLLLGAAGMAICFLVL 333
Query: 109 SLTAAISKLHPPDCG---------NQDSGACPGPTPWQL-AFLFT----GLGLMVIGAGG 154
+ GP PW + + LF + + A
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393
Query: 155 IRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203
N G P IT Y F +++ + V+
Sbjct: 394 WL-ANFLIG--FLFPI-------ITGAIGGYVFLVFAGLLVLFILFVFF 432
|
Length = 449 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.89 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.88 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.85 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.85 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.81 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.79 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.77 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.74 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.74 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.73 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.72 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.7 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.7 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.69 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.61 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.58 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.57 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.46 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.45 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.43 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.38 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.34 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.29 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.28 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.26 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.24 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.21 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.21 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.2 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.2 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.2 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.19 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.18 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.18 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.17 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.17 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.17 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.16 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.15 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.15 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.14 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.12 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.12 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.12 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.11 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.11 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.11 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.1 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.1 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.08 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.08 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.08 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.08 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.08 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.05 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.04 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.02 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.02 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.99 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.88 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.87 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.87 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.87 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.86 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.85 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.84 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.81 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.78 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.78 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.78 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.76 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.76 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.76 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.76 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.76 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.75 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.74 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.72 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.67 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.64 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.63 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.62 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.6 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.58 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.57 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.56 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.55 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.53 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.5 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.49 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.48 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.47 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.47 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.46 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.45 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.44 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.4 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.38 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.37 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.37 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.35 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.33 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.3 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.27 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.19 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.17 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.11 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.03 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.02 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.98 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.96 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.88 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.87 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.83 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.64 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.62 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.6 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.49 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.46 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.42 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.26 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.19 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.09 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.95 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.93 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.92 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.71 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.5 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.2 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.02 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.96 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.85 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.8 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.17 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.16 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.05 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.88 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.38 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.64 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.08 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.65 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 89.55 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 87.26 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 86.67 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 84.78 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 84.68 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 83.1 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 82.43 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=382.18 Aligned_cols=537 Identities=43% Similarity=0.751 Sum_probs=480.5
Q ss_pred ccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 19 NYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
....|+.+.+++..+.++.++++++..++..|++..++.+...+...++.+........+++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCC-CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDC-GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
++..+|.+++.++..+|.+.++.| ...+...|..++..+...++.++-+..+|.|+..|+..++.+||+++..+..++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999999988999988887 3344457888899999999999999999999999999999999999777888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHh
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 257 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
+.+.|+|+|+..++|..++..+..|+.+..||.+.|.++.+..++++++++...+.++..+|.+++.....+++..+.++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHH
Q 007827 258 RHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWAS 337 (588)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (588)
++...+..+... ...........+++++++++++++..+++. +.....++|+.++.+.+++.|..++.+++++.
T Consensus 272 ~~~~~~~~~~~~----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~ 345 (571)
T KOG1237|consen 272 RKAVVSLDPEEL----YYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT 345 (571)
T ss_pred HhccCCCcchhc----cccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence 887765442221 111122233344788999999999887654 55667889999999999999999999999999
Q ss_pred HHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHH
Q 007827 338 AIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIG 417 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g 417 (588)
.+.++..+.|+.+..+.|+..++++.+ +++.+++++...+..+...+..|+.|++..|+.+|..++..+++.+.++++|
T Consensus 346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G 424 (571)
T KOG1237|consen 346 TIIYSTVYAQMVTFFVLQATTMDRHLG-SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIG 424 (571)
T ss_pred HHHHHHHHHhhhhheehhhhhcCCCCC-CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeecc
Confidence 999999999999999999999999997 3499999999999999999999999999999999999877779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHH
Q 007827 418 MILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGS 497 (588)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~ 497 (588)
+++..+++...+..+.++.+..... .+++.+.+.+|.+++++++|++|.+..+...++.++++|++||+.+++
T Consensus 425 ~~~si~sm~~aa~vE~krl~~~~~~-------~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a 497 (571)
T KOG1237|consen 425 LVLSILSMAVAGIVEAKRLKTAVSL-------LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA 497 (571)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhc-------cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence 9999999999999988777765431 133577999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC-CCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 007827 498 LAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 571 (588)
Q Consensus 498 ~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 571 (588)
++.+..++|+.++.++...+...++. ..+|++ .+.|.++...+|++.+....+....+..+.++++.++.++
T Consensus 498 l~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 498 LWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 99999999999999999988876543 558999 9999999999999999999999999999999888776553
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=315.30 Aligned_cols=462 Identities=18% Similarity=0.266 Sum_probs=347.7
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC----CCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFN----MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKT 93 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~ 93 (588)
....++|.++.++..+++|+++|||+...+..|++.+++ +|.+++..+.++|.....+...++||++||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 335578899999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.++.++|.++++.... .....++++..+.++|.|.+.|+..++++|++++++++
T Consensus 95 I~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 99999999999999887620 13557899999999999999999999999999998887
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh--------
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-------- 245 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 245 (588)
+. .+++.+|.+.|+|+.++|++.+++.+++||+..|.++++.+.++++.++..++........+++..
T Consensus 153 rD----~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 RD----GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred cC----CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 55 469999999999999999999999999999999999999999999988887766543322211110
Q ss_pred hHHHHHHHHHHhh-ccCCCCCCccccccCCCcccccCCCCCCCccchhh-hhcccCcccccccCCCCCCccccchhhHHH
Q 007827 246 STVQVFVAAIKKR-HLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD-KAAIMTPEDQIKSDGSAINPWRLSSMQKVE 323 (588)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (588)
...+......... ..... .+.+.... ...+.... -+-.....|. +.. +
T Consensus 229 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~i~~~~----~~~~~~~~~~---~~~-~ 278 (498)
T COG3104 229 VLGGLVVMILAALLTLLLN----------------------QNTFSGVLLVISILIAI----IYFAEAFRSP---KVF-D 278 (498)
T ss_pred hHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH----HHHHHHhccC---ccH-H
Confidence 0011111111000 00000 00000000 00000000 0000001110 112 5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhc
Q 007827 324 EVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 402 (588)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 402 (588)
+|++....+++++..++||+.+.|+++.+..++.. .+++.. ++.+++++++++|++.+++++|+.+++ +.+++
T Consensus 279 er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~--g~~vp~~~fQslNp~~Iii~~pI~a~l----~~~l~ 352 (498)
T COG3104 279 ERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF--GFEVPPAWFQSLNPFFIILFSPILAAL----WTKLG 352 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--ceecCHHHHHhhCHHHHHHHHHHHHHH----HhHhh
Confidence 78888899999999999999999999977777654 444422 588999999999999999999999998 55544
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhh
Q 007827 403 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEF 482 (588)
Q Consensus 403 ~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 482 (588)
++++..+...++++|++++..+++++....... + +.....|.+|+++.+++.++||.+.+|...++
T Consensus 353 ~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~------~--------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~ 418 (498)
T COG3104 353 RGNKQPSTPIKFALGLILAGLGFLILLLAGIWF------G--------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSM 418 (498)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh------c--------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444558888999999999999988887652211 0 11234899999999999999999999999999
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 483 YYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 483 ~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+.+.+|+++.+..+|++.++...++.++..+.+.... ++ .. .+......+|+..+.+.++..+..+...+
T Consensus 419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----~~----~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----PA----YTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----hh----hhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999888773211 00 00 01123456788888888877777776665
Q ss_pred ccc
Q 007827 563 WYK 565 (588)
Q Consensus 563 ~~~ 565 (588)
+.+
T Consensus 489 ~~~ 491 (498)
T COG3104 489 KLN 491 (498)
T ss_pred HHH
Confidence 543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=312.62 Aligned_cols=464 Identities=14% Similarity=0.218 Sum_probs=327.4
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
.+|+|.++.++..++++++++|++..+++.|+++++|++.++++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999995599999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.+++.++.+ ....++++|.++++|.|.+.|+..++++|++|++++++ .
T Consensus 90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~----~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL----D 142 (489)
T ss_pred HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh----h
Confidence 99999988887632 12346688999999999999999999999998643322 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc--CCCCChhhhHHHHH------
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV--KPEGSPLASTVQVF------ 251 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 251 (588)
..++++|.+.|+|.+++|.+++++.+++|||+.|++..+..+++++.+...++..++. ++++++.+.....+
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~ 222 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV 222 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence 4699999999999999999999999999999999997766655555555554433322 12222221110000
Q ss_pred HHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh
Q 007827 252 VAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV 331 (588)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (588)
.......+....... ..........+... ...++....++ .++++.+..
T Consensus 223 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~----------~f~~~~~~~~~-~~r~r~~~~ 271 (489)
T PRK10207 223 VMIFVCAWLMHNVEV--------------------ANLVLIVLSIVVTI----------IFFREAFKLDK-TGRNKMFVA 271 (489)
T ss_pred HHHHHHHHHHhhhhH--------------------HHHHHHHHHHHHHH----------HHHHHHhcCCH-HHHHHHHHH
Confidence 000000000000000 00000000000000 00000000011 224445455
Q ss_pred hhHHHHHHHHHHHHhcccceeeeecc-ccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCCh
Q 007827 332 IPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITI 410 (588)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 410 (588)
..+++..+++|..+.|....+..+.. ..++... ++.+++.+++++|++.+++..|+.+++ .+|+++|+.+.++
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~ 345 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSM 345 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCc
Confidence 66666788899999998775555443 3444443 577888999999999999999997665 8999888777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc
Q 007827 411 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 490 (588)
Q Consensus 411 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~ 490 (588)
..++.+|+++.+++++......... ...+ ...+.+|++..+++.++||++.+++.++++.+.+|++
T Consensus 346 ~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~-----------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~ 411 (489)
T PRK10207 346 PMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ-----------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH 411 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence 9999999999988876654321100 0001 1357788999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 491 MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 491 ~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
++|.++|++++..++|+.++..+........ +..++.. ....+.++|...+++.++..+++++..|+.++.
T Consensus 412 ~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~~~~~~~----~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 412 LMGFILGMWFLTQAAAFLLGGYVATFTAVPD--NITDPLE----TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886553100 0000100 012467889889988888888887777665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=308.54 Aligned_cols=452 Identities=16% Similarity=0.225 Sum_probs=324.6
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI--FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
.+++|.++.+.+.++++.+++|++.++++.|++++ +|+|..+++++.+.+.++..++.+++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 35677788888999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
.++.+++.++++++ .+.+.+++++.+.|+|.|...|+..++++|+++++++. .
T Consensus 86 ~~~~~~g~~~~~~~------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMS------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R 138 (475)
T ss_pred HHHHHHHHHHHHhc------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence 99999988877765 23556778999999999999999999999999754321 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhh-----HHH---
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-----TVQ--- 249 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--- 249 (588)
++.+++++|.+.|+|.++||.+++++.+++||++.|++.++..+++++.+...++.+++.++++++.+. ..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 345799999999999999999999999989999999998876666666555555444332222211110 000
Q ss_pred ---HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccch-hhhhcccCcccccccCCCCCCccccchhhHHHHH
Q 007827 250 ---VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV 325 (588)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (588)
.+....+..+..... . ..+.... ..........+ ... .+ +.+.. ++
T Consensus 219 ~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~-~~~-----~~----~~~~~-~~ 268 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHV-V------------------IANILLMTVTLAVIIFFFR-LAF-----KP----RLDAV-AR 268 (475)
T ss_pred HHHHHHHHHHHHHHHhcc-H------------------HHHHHHHHHHHHHHHHHHH-HHH-----hc----cCCHH-HH
Confidence 000000100000000 0 0000000 00000000000 000 00 00111 23
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeee-eccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVF-QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 404 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k 404 (588)
++....+++++..+++|..+.|..+.+.. +....+.+.+ ++.+++++++++|++.+++..|+.+++ ..++.||
T Consensus 269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~--~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~ 342 (475)
T TIGR00924 269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRK 342 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhC
Confidence 33344677788888999999999985443 3344555554 677899999999999999999997765 5666666
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 405 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 405 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
.++.+...++.+|+++.++++...+...+. . + ++...+.+|+++++++.++||.+..|..+++++
T Consensus 343 ~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~--~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~ 407 (475)
T TIGR00924 343 GKDPTTPLKFTLGMLFCGASFLTFAASIWF----A--D---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWT 407 (475)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c--C---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 545677778899999999998887754211 0 0 123478999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 485 KQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 485 ~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
+.+|+++||+++|++.+...+|+.+++.+.+...+.. +..+.|...+++.++..+++++..|+.
T Consensus 408 ~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 408 KIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887664422 234577777777777777777766654
Q ss_pred c
Q 007827 565 K 565 (588)
Q Consensus 565 ~ 565 (588)
+
T Consensus 472 ~ 472 (475)
T TIGR00924 472 N 472 (475)
T ss_pred H
Confidence 3
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=298.94 Aligned_cols=449 Identities=14% Similarity=0.191 Sum_probs=316.2
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
.+|+|.++.++..++.+++.+|++..+++.|+++++|++..+++.+.+.+.....++.+++|+++||++||||+++++.+
T Consensus 5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..++.+++.... .+...++++..+..+|.|...++..++++|++|+++++| .
T Consensus 85 l~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R----~ 137 (493)
T PRK15462 85 LMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRR----D 137 (493)
T ss_pred HHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccc----c
Confidence 9988877665421 112234555566678888888888999999997643333 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCC-CCChhh--hHHH---HHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKP-EGSPLA--STVQ---VFVA 253 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~ 253 (588)
++++++|...|+|+.++|.+.+++.+.+||++.|.+.++.++++++.++..++...+..+ ++++.. .... ....
T Consensus 138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL 217 (493)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence 569999999999999999999999999999999999887777777766665544333211 111111 0000 0000
Q ss_pred H-------HHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhh-hcccCcccccccCCCCCCccccchhhHHHHH
Q 007827 254 A-------IKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDK-AAIMTPEDQIKSDGSAINPWRLSSMQKVEEV 325 (588)
Q Consensus 254 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (588)
. .......... ......... .....- .+-.......++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~er 264 (493)
T PRK15462 218 VLLVATPALITVLFWKEW---------------------SVYALIVATIIGLGVL------------AKIYRKAENQKQR 264 (493)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH------------HHHHHhcCCHHHH
Confidence 0 0000000000 000000000 000000 0000000112457
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeeeec-cccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 404 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k 404 (588)
+++..++++.+..++||..+.|.++.+..+. ..++++++ ++.+|+.+++++|++.+++.+|+...+ +.|+.||
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~--g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~ 338 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF--GYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAG 338 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc--ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcC
Confidence 7888888899999999999999999655544 56788776 789999999999999999999998776 6777555
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 405 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 405 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
+++++...++.+|++++++++.++....... ..+ ...+.+|++..+++.++||.+..|...+++.
T Consensus 339 ~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~-----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~ 403 (493)
T PRK15462 339 NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY-----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQIT 403 (493)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC-----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 5567888999999999999988776543210 001 1278889999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 485 KQFPENMRSIGGSLAFVGF-AISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 485 ~~~P~~~rg~~~~~~~~~~-~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
+.+|+|.||+.||++.+.. .+|+.+++.+.........+ +-.........+...|...+.+.++.
T Consensus 404 ~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 404 RIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998744 68888887777655321000 00000001124566777777766655
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=298.80 Aligned_cols=460 Identities=15% Similarity=0.252 Sum_probs=320.8
Q ss_pred ccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 19 NYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
..+++|.++.++..++++.+++|++..+++.|+++++|+|..+++++.+.+........+++|+++||++|||++++.+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999888887777777899999999339999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
++.+++..++.++. .+...+++++.++|++.|...++..++++|++|+++++ +
T Consensus 96 ~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~ 148 (500)
T PRK09584 96 IVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----L 148 (500)
T ss_pred HHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----h
Confidence 99998888777652 13455778899999999999999999999999753322 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc--CCCCChhhhH--H----HH
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV--KPEGSPLAST--V----QV 250 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~~ 250 (588)
..+++++|.+.++|.+++|.+++++.+++||++.|++.++..+++++.+.+.++..++. ++++++.+.. . ..
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGV 228 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHH
Confidence 24688899999999999999999999999999999998876666665544443332222 1221111110 0 00
Q ss_pred HHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc-chhhHHHHHHHHh
Q 007827 251 FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL-SSMQKVEEVKVLI 329 (588)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 329 (588)
.............. . ..+. .......... ...++. ...++ .++++..
T Consensus 229 ~~~~~~~~~~~~~~-~------------------~~~~--~~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 229 VALIAIATWLLHNQ-E------------------IARM--ALGVVALGIV----------VIFGKEAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHhcc-h------------------HHHH--HHHHHHHHHH----------HHHHHHHhhcCH-HHHHHHH
Confidence 00111111000000 0 0000 0000000000 000000 01112 2344455
Q ss_pred hhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCC
Q 007827 330 RVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGI 408 (588)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~ 408 (588)
..+.+++..+++|..+.|.+..+..+... .+++.. ++.+++++++++|++.+++++|+.++. .+|+++| .
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~ 347 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---L 347 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---C
Confidence 55667788889999999999977665532 344443 567889999999999999999998775 6777666 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC
Q 007827 409 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 488 (588)
Q Consensus 409 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P 488 (588)
...+++.+|+++.++++..+.....+. ++....+.+|.++.+++.++||++.+|...+++.+.+|
T Consensus 348 ~~~~~~~~G~~l~~l~f~~l~~~~~~~---------------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP 412 (500)
T PRK09584 348 PMPHKFAIGMVLCSGAFLVLPLGAKFA---------------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP 412 (500)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc
Confidence 577899999999999998877653210 11134677899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 489 ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 489 ~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
+++||+++|++.++..+|+.+++.+......... ..+.. ...+++.+.|...++++++..++++...++.++.
T Consensus 413 ~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~--~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 413 QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN--VTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888887754321000 00000 0112467888888888887777777777666544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=222.54 Aligned_cols=375 Identities=15% Similarity=0.073 Sum_probs=239.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
+|....+.+..+...++.....+.++.|+++++|+|..+.+++.+.+.++..+++++.|+++|| +||||+++.+.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 4555666677777788877888899999999999999999999999999999999999999999 699999999998887
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++...+.++....+ ....+...+++.|+++|++.+...+...+++.|.+++++ ++.+.
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence 77666555421000 000246678999999999999999988888889886422 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
++.....++|.++++.+++++.+.+||++.+++..+..++..+ +..+ .++.++++++...
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~---------------- 210 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVKGERLP---------------- 210 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCCccchh----------------
Confidence 7777788899999999999999999999988765554332222 1111 1111110000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhh-hHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVI-PIWASAIVY 341 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 341 (588)
++ +..+...... ...+....+
T Consensus 211 ---------------------------------------------------~~-------~~~~~~~~~~~~~~~~~~~~ 232 (399)
T PRK05122 211 ---------------------------------------------------FR-------RVLGRVWPYGMGLALASIGF 232 (399)
T ss_pred ---------------------------------------------------HH-------HHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000000 001111111
Q ss_pred HHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
.......+.+...+ ... ..........++.++..++..+ +.||.++| +.+..+.++.
T Consensus 233 ~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~~~~~~ 289 (399)
T PRK05122 233 GTIATFITLYYAAR------GWD------GAALALTLFGVAFVGARLLFGN----LINRLGGL-------RVAIVSLLVE 289 (399)
T ss_pred HHHHHHHHHHHHHc------ccc------cchHHHHHHHHHHHHHHHHHHH----HHHHhccH-------HHHHHHHHHH
Confidence 11111111111100 000 0111112223333333343333 36665543 4555666666
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHH
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV 501 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~ 501 (588)
.+++...... .+.+..+...++.+++.+...+.......+.+|++.||+++|+++.
T Consensus 290 ~~~~~~~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (399)
T PRK05122 290 ILGLLLLWLA------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV 345 (399)
T ss_pred HHHHHHHHHh------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6665554432 2334455567788888888888777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
...+|..+++.+.+.+.+.. ++++.|++.+++.+++.+..++..
T Consensus 346 ~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 346 FLDLSLGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887643 456778887777777766655543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=220.85 Aligned_cols=372 Identities=13% Similarity=0.064 Sum_probs=234.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|...+.+.+..+......+...+.+| .+.+++|+|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence 43344444444444333343333444 4577999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+.+.++ .+++.++++|+++|++.+...+...+++.|++|+++ ++...
T Consensus 86 ~~~~~~~~~------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 135 (390)
T PRK03545 86 ASHVLSALA------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL 135 (390)
T ss_pred HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence 888888776 467889999999999999888888999999987422 23568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
+++..+.++|.+++|.+++.+.+.+|||+.|++.++..++..+......|+.+++ ++++. +......
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~----~~~~~~~------- 202 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSL----KSLPLLF------- 202 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchH----HHHHHHH-------
Confidence 8888899999999999999999889999999998776655544433322221110 00000 0000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhh-hhhHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVY 341 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 341 (588)
..+.... .....+.....
T Consensus 203 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 221 (390)
T PRK03545 203 -------------------------------------------------------------RRPALVSLYLLTVVVVTAH 221 (390)
T ss_pred -------------------------------------------------------------hCcHHHHHHHHHHHHHHHH
Confidence 0011111 11111111111
Q ss_pred HHHHhcccceeeeeccccccccCCcccc-ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFK-IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
+..+...+.+.. ...| .+ ...........++.+++..+.++ +.||.++| .+..+..+
T Consensus 222 ~~~~~~~~~~l~-------~~~g---~s~~~~~~~~~~~~~~~~~g~~~~g~----l~dr~~~~--------~~~~~~~~ 279 (390)
T PRK03545 222 FTAYSYIEPFVQ-------QVAG---LSENFATLLLLLFGGAGIIGSVLFSR----LGNRHPSG--------FLLIAIAL 279 (390)
T ss_pred HHHHHHHHHHHH-------HhcC---CCccHHHHHHHHHHHHHHHHHHHHHH----Hhhccchh--------HHHHHHHH
Confidence 222211111111 1111 00 01112222333344444444333 35554432 23344444
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~ 500 (588)
...+....... ..+.+.++...++.+++.....+.....+.+..|+ .|++++|+++
T Consensus 280 ~~~~~~~l~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~ 335 (390)
T PRK03545 280 LLVCLLLLLPA-----------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFS 335 (390)
T ss_pred HHHHHHHHHHH-----------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44443333221 12344555567777888777777777788888775 7899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
....+|..+|+.+.|.+.+.. +++..|++.+++.+++.+..+...+
T Consensus 336 ~~~~~g~~~G~~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 336 GIFNIGIGAGALLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998754 4567888888888888777766653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-24 Score=234.86 Aligned_cols=337 Identities=27% Similarity=0.514 Sum_probs=266.8
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
++||++...+..|+++.+|++..++..+...+.....+..+++|+++|+++||+|++.++.++..+|..++++... |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988877532 110
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q 007827 118 HPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 197 (588)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 197 (588)
. ...+....+++..+..+|.|++.|+..+..+|+++++ .++.+.++|+++|.+.|+|+.+++
T Consensus 80 ~---------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~---~~~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 G---------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER---QLSLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred c---------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123455778899999999999999999999999742 233456899999999999999999
Q ss_pred HHHHHhccc-------cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcccc
Q 007827 198 TVIVYVQSD-------VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTL 270 (588)
Q Consensus 198 ~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (588)
.+.+++.++ .+|..+|.+++++++++++++...++.+++.++.+++..+..+.+....++++....+.
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----- 216 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----- 216 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence 999998744 36999999999999999888887777776666666666666666666555442211100
Q ss_pred ccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc
Q 007827 271 HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT 350 (588)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (588)
...++++.+.... ..+.++++|++++++++++..+++|..+.|+.+
T Consensus 217 ----------------~~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s 262 (654)
T TIGR00926 217 ----------------WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGS 262 (654)
T ss_pred ----------------cchhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 0012232221110 123567789999999999999999999999999
Q ss_pred eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 007827 351 YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGI 430 (588)
Q Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~ 430 (588)
.+..|....+.+++ ++.+++.+++.+|++.++++.|+.++.++|..+|.+. +.++..++.+|++++++++.+.+.
T Consensus 263 ~~~~qa~~m~~~l~--g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 263 RWTLQATRMDGDVG--GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred HHHHHHHHhcCccC--CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776665 6778999999999999999999999887777766543 378899999999999999999988
Q ss_pred HHHHHhh
Q 007827 431 IEDKRRS 437 (588)
Q Consensus 431 ~~~~~~~ 437 (588)
.+...++
T Consensus 338 ve~~~~~ 344 (654)
T TIGR00926 338 VQLKVNP 344 (654)
T ss_pred HHHHHhc
Confidence 8766654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=220.58 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=139.8
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
++|..........+.+.+..+......|. +.+++|+|+.+.+++.+.+.++..+++++.|+++|| +||||++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence 44555555556666666666665555554 457899999999999999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+++.+. .+++.+++.|++.|++.+...+...+++.|.+++ +.++.
T Consensus 90 ~~~~~~~~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~ 139 (406)
T PRK11551 90 FGLFSLATAQA------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP------RLRGT 139 (406)
T ss_pred HHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH------HHHHH
Confidence 87777666665 3567888999999999999999899999999863 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+++.+...++|..+++.+++.+.+..+|++.|++.++..++..++
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 6888888999999999999988888899999998876654444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=220.02 Aligned_cols=390 Identities=13% Similarity=0.031 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 007827 28 FVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV 107 (588)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~ 107 (588)
.++...+...++.......+|.+. ++++.++.+.|++.+.+.++..+++++.|+++|| +|||+.+..+.++.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHH
Confidence 344445555565555556666665 5678899999999999999999999999999999 69999999888777776655
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+....... ..+++.+++.|++.|++.+...++..+++.|.+++ +.++...++.+.
T Consensus 99 ~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 153 (417)
T PRK10489 99 LALNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR------ENLMQAGAITML 153 (417)
T ss_pred HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH------HHHHHHHHHHHH
Confidence 44321100 03467788899999999888888888888888863 123356777788
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC-CCCChhhhHHHHHHHHHHhhccCCCCCC
Q 007827 188 TFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEP 266 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
..++|..+||.+++.+.+..+|++.|++.++..++..++.+.. |+.++++ +++++..+..+.
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~---------------- 216 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSLLAG---------------- 216 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHHHHH----------------
Confidence 8999999999999999888899999988776665554443322 2111100 000000000000
Q ss_pred ccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 007827 267 WLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALV 346 (588)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (588)
++ .....+.+.......+..........
T Consensus 217 -----------------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T PRK10489 217 -----------------------------------------------FR-----FLLASPVVGGIALLGGLLTMASAVRV 244 (417)
T ss_pred -----------------------------------------------HH-----HHHcChHHHHHHHHHHHHHHHHhHHH
Confidence 00 00000111111100011000111111
Q ss_pred cccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHH
Q 007827 347 QQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 426 (588)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~ 426 (588)
.. +.+.....|. + ....+.+.....++.+++..+.+++ .||.+ +.+.+..+.++.+++++
T Consensus 245 ~~-------p~~~~~~~g~-~-~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~~-------~~~~l~~~~~~~~~~~~ 304 (417)
T PRK10489 245 LY-------PALADEVWQM-G-AAQIGLLYAAVPLGAALGALTSGWL----AHSAR-------PGLLMLLSTLGSFLAVG 304 (417)
T ss_pred hh-------HHHHHhccCC-C-hhHhHHHHHHHHHHHHHHHHHHHHh----hhccC-------cchHHHHHHHHHHHHHH
Confidence 11 1111221220 0 0011222333344444444443332 34321 12345555555555555
Q ss_pred HHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 007827 427 ISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS 506 (588)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig 506 (588)
..... .+.+......++.+++.+...+...+++.+.+|++.||+++|+++....+|
T Consensus 305 ~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 360 (417)
T PRK10489 305 LFGLM------------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTG 360 (417)
T ss_pred HHHcc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhh
Confidence 44431 234445556677778777777777889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Q 007827 507 NYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGA 573 (588)
Q Consensus 507 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 573 (588)
..+++.+.|.+.+.. ++...++..+++.++..++.+...+++|+++.||.+
T Consensus 361 ~~~g~~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 361 DAIGAALLGGLGAMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HhHHHHHHHHHHHHh----------------chhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999999998754 334566677777777667777777888877776654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=215.31 Aligned_cols=375 Identities=12% Similarity=0.054 Sum_probs=234.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
.+.++.+.+..++...+.....+.+|.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||.++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHH
Confidence 3455555566666677777777888999999999999999999999999999999999999999 699999998887776
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+...+....+. ....++..++++|+++|++.+...+...+++.|.+++++ ++.++
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~ 150 (392)
T PRK12382 93 LAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM 150 (392)
T ss_pred HHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence 65443322211010 001367788999999999999888888888889886422 23557
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCC
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKL 262 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
++...+.++|..++|.+++++.+.+||++.+.+..+..++.+ .+. ++.++.+++++...+.
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~--------------- 211 (392)
T PRK12382 151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAGERPSL--------------- 211 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCcccCchH---------------
Confidence 778888899999999999999888999987665544332222 111 1111111100000000
Q ss_pred CCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 007827 263 PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 342 (588)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (588)
+ ..+ +... ...+ . .......+.
T Consensus 212 ---------------------------~---------------------~~~-----~~~~-~~~~-~---~~l~~~~~~ 233 (392)
T PRK12382 212 ---------------------------W---------------------SVV-----GLIW-KPGL-G---LALQGVGFA 233 (392)
T ss_pred ---------------------------H---------------------HHH-----HHHH-HhHH-H---HHHHHHHHh
Confidence 0 000 0000 0000 0 001111111
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
......+.+.. +.... ..........++.++..++..+ +.||.++| +.+..+..+..
T Consensus 234 ~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~~~~~~~ 290 (392)
T PRK12382 234 VIGTFVSLYFA------SKGWA------MAGFTLTAFGGAFVLMRVLFGW----MPDRFGGV-------KVAIVSLLVET 290 (392)
T ss_pred HHHHHHHHHHH------hcCCc------hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCC-------eehHHHHHHHH
Confidence 11111111110 00010 0111112223333344444333 47776655 33445555665
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
++++..... .+.+......++.+++.+...+.......+.+|++.||++.|++++.
T Consensus 291 ~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (392)
T PRK12382 291 VGLLLLWLA------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF 346 (392)
T ss_pred HHHHHHHHc------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 665544432 23344455667778888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 007827 503 FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLC 560 (588)
Q Consensus 503 ~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~ 560 (588)
..+|..+++.+.+.+.+.. ++.+.|.+.+++.+++.+..+..
T Consensus 347 ~~~g~~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 347 QDIAYGVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754 35678888888777776665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=207.53 Aligned_cols=379 Identities=14% Similarity=0.097 Sum_probs=256.9
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
++.|..++.+.+..|.-...=+.....+|.. .+++|.|..++|++++.|..+..+++|+...++|| +.||+.++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 3445666666666666666666666677655 67999999999999999999999999999999999 699999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.++++++ .+++.++++|++.|+..|.+++...++.+++.|++++ +
T Consensus 87 lFi~~n~l~alA------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~------~ 136 (394)
T COG2814 87 LFIVSNLLSALA------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR------G 136 (394)
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch------h
Confidence 999999999998 4688999999999999999999999999999985322 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc-eeeccCCCCChhhhHHHHHHHHHHhh
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR-LYAKVKPEGSPLASTVQVFVAAIKKR 258 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
++.++...+..++.++|..++.++.+.+|||..|++..++.++.++..+...| +...+ ..+.+..+..+ ..
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~----~l--- 208 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLR----LL--- 208 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHH----Hh---
Confidence 56888888999999999999999999999999999988888887777666555 11110 01011110100 00
Q ss_pred ccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhh-hhhHHHH
Q 007827 259 HLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWAS 337 (588)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 337 (588)
+++++.. +....+.
T Consensus 209 -----------------------------------------------------------------~~p~v~~~l~~t~l~ 223 (394)
T COG2814 209 -----------------------------------------------------------------RRPGVLLGLLATFLF 223 (394)
T ss_pred -----------------------------------------------------------------cCchHHHHHHHHHHH
Confidence 0111111 1111222
Q ss_pred HHHHHHHHhcccceeeeeccccccccCCccccc-cchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 338 AIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI-PAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
....+..|.+...++... .| +.. ...+......++.+++..+.+|+ .|| +.| +.+..
T Consensus 224 ~~g~F~~ftYi~P~L~~v-------~g---~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-~~~-------~~l~~ 281 (394)
T COG2814 224 MTGHFALYTYIRPFLESV-------AG---FSVSAVSLVLLAFGIAGFIGNLLGGRL----ADR-GPR-------RALIA 281 (394)
T ss_pred HcchhhhHHhHHHHHHHc-------cC---CCHhHHHHHHHHHHHHHHHHHHHHhhh----ccc-cch-------hHHHH
Confidence 222333333222222211 11 111 12334444555556666665554 666 322 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
...+..+.+..+.... .+.+..+...++.++.........+....+.. ++.++.++
T Consensus 282 ~~~l~a~~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~ 337 (394)
T COG2814 282 ALLLLALALLALTFTG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAG 337 (394)
T ss_pred HHHHHHHHHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHH
Confidence 5566666665555431 23344444444455555555555555555533 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
+++....++|..+|..+++.+.+.. ++....++.+.+.+++.++.+...++.+
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998753 5667788888888888777776665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=227.12 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=124.5
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
...+.+++.+++|++..+.+++.+++.++..++++++|+++|| +|||+++++++++..++.++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 3445556677899999999999999999999999999999999 699999999998888888777766
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
.+++.++++|++.|++.|+..++..+++.|.+|. +.++..++++..+..+|.++++.++..+
T Consensus 253 ------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~------~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 ------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ------EKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999963 2234567777888889999888876554
Q ss_pred ccc-------------cchhhHHHHHHHHHHHHHHHHH
Q 007827 204 QSD-------------VSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 204 ~~~-------------~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
... .+||+.+++.++..++.+++.+
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 432 3689988887665555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=221.92 Aligned_cols=409 Identities=13% Similarity=0.082 Sum_probs=224.2
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc
Q 007827 56 NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 135 (588)
Q Consensus 56 g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (588)
+++..+.+++.+.+.++..+++++.|+++|| +||||+++++.+++.++.+.+++....- . ....++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~-~-----------~~~~~~~ 117 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGF-T-----------SIGPDNT 117 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccc-c-----------cccccch
Confidence 8999999999999999999999999999999 6999999999999888877666531000 0 0000112
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc--------ccc
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDV 207 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~ 207 (588)
.....++++|+++|++.|...+...++++|.+|+++ |+...+....+..+|.++++.++..+. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345678899999999999999999999999997421 235677777788889888877765443 457
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCC
Q 007827 208 SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 287 (588)
Q Consensus 208 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (588)
|||+.|++.++..++..+..++ .|+.++....+.+.++..+.. ++ ........ .
T Consensus 192 gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~~~~~~~~----~~--~~~~~~~~-------------------~ 245 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLLYF-VPETPRYLMSRGKQEQAEGIL----RK--IMGNTLAT-------------------Q 245 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHcCCHHHHHHHH----HH--HcCChhHH-------------------H
Confidence 8999999877666555443333 233221100001111100000 00 00000000 0
Q ss_pred ccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccce--eeeeccccccccCC
Q 007827 288 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTY--VVFQALQSDRRVGN 365 (588)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 365 (588)
..+.... .. . .+.+..+..................+.+...+ ...+........|
T Consensus 246 ~~~~~~~-~~--------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g- 302 (479)
T PRK10077 246 ALQEIKH-SL--------------------D-HGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG- 302 (479)
T ss_pred HHHHHHH-HH--------------------H-HhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcC-
Confidence 0000000 00 0 00000000000000000000001111111110 0000000001111
Q ss_pred cccccc-chhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 007827 366 THFKIP-AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV 444 (588)
Q Consensus 366 ~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 444 (588)
.... .........+..++..++.. ++.||++|| +.+..+.++++++++.+.....
T Consensus 303 --~~~~~~~~~~~~~~~~~~i~~~~~g----~l~dr~g~r-------~~~i~~~~~~~v~~~~l~~~~~----------- 358 (479)
T PRK10077 303 --ASTDIALLQTIIVGVINLTFTVLAI----MTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY----------- 358 (479)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHH----HHHHHhcCh-------HHHHHhHHHHHHHHHHHHHHHh-----------
Confidence 0000 11112222223333333333 347777765 5667777777777666554311
Q ss_pred cccccCCccccchHHHHHHHHHHHHHHHHh-HhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 007827 445 GLEQRRGAISSLSGLWLIPQLSLIGFSEAF-TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 523 (588)
Q Consensus 445 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~ 523 (588)
......+.+...++.+.+.+. ..+..+.++.|.+|++.|++++|+....+++++.+++.+.|.+.+.
T Consensus 359 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~--- 426 (479)
T PRK10077 359 ---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN--- 426 (479)
T ss_pred ---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---
Confidence 011222333334444444443 3466789999999999999999999999999999999888866521
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 007827 524 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPE 575 (588)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (588)
+|+.++ .+..+.|++++++++++.++.+++.+|.|+++.||.++.
T Consensus 427 ----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 427 ----SWLVAH---FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred ----cchhhh---ccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 111110 122356777787777777777777888887766654333
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=216.83 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=144.3
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
.+|..+.+....++...+++.+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +|||++++++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 34566777778888888888999999999999999999999999999999999999999999999 69999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.++.++..++ .+++.+++++.+.+.+.+...++..++..|.+++ +.++..
T Consensus 84 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (395)
T PRK10054 84 ASGFIAIPLV------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSS------TSKTKI 133 (395)
T ss_pred HHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------hHHHHH
Confidence 7777776665 3456677788888888777788888888888753 223467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
+++.+...++|.+++|.+++++.+ .+|+.+|++.++..++.+++.
T Consensus 134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 889999999999999999998875 789999998777666654433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=215.67 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHH
Confidence 3344444444445556666554 5799999999999999999999999999999999 6999999999999888888777
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
++ .+++.+++.|++.|++.|...+...+++.|++++ +.++...++++.+.
T Consensus 107 ~~------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~ 156 (434)
T PRK11663 107 FS------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR------TERGGWWAIWNTAH 156 (434)
T ss_pred HH------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH------HHHHHHHHHHHHHH
Confidence 65 3567788899999999999889899999999863 22346788888999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
++|..++|.+.+++.+.+|||+.|++.++..++..
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999988776554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=213.29 Aligned_cols=168 Identities=12% Similarity=0.140 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
..++...++..++++.+.++++.|+++++|+|..+.|.+.+...+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 445567778888888999999999999999999999999999999999999999999999 6999999999999988887
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+... .+++.+++.|+++|++.+...|...+++.|.+|+ +.++.++++.+
T Consensus 92 ~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIA------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP------HQRGRFFSLLM 141 (400)
T ss_pred HHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHH
Confidence 77665 3567788999999999988888888999998863 22346789999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
...++|..+||.+++++. .+||++.|++.++..++..++
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 689999999877665554433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-22 Score=215.11 Aligned_cols=178 Identities=14% Similarity=0.056 Sum_probs=145.7
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+.+..++..+..+.+...+|.|.+ ++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence 34566666777777777788888888764 699999999999999999999999999999999 6999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.+.+.++ .+.+.++++|+++|++.+...+...+++.|.+|+ +.++..++
T Consensus 88 ~~~~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 137 (471)
T PRK10504 88 GSLFCALS------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR------EQYMAAMT 137 (471)
T ss_pred HHHHHHHh------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH------HHHHHHHH
Confidence 77776654 3567788999999999999999999999998863 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+.+...++|..++|.+++++.+..|||+.|++......+..++.....++
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999998776665555554444343
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=207.61 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=142.4
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
..++.|+.+..+....++.....|.....+|.+ .+++|+++++.++..+.+.++..+++++.|+++|| +|||++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHH
Confidence 444566655555555444544555555666665 57899999999999999999999999999999999 6999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
.++.+++.+++.++ .+++.+++.|+++|++.+...+...+++.|.+|+ +.
T Consensus 92 ~~~~~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~------~~ 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP------RT 141 (394)
T ss_pred HHHHHHHHHHHHHH------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH------hH
Confidence 99999888777665 3678899999999999999999999999999863 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
++.+.+......++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 34568888888999999999999999999999999998776554433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=205.15 Aligned_cols=169 Identities=13% Similarity=0.071 Sum_probs=129.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHH-HHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~-~~~~~~i~~~~~~~ 110 (588)
..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+.+++.|+++|| +||||.++. +.+...++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788899999999999999999999999999999999999999999 699987655 44444445555555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+ .+++.+++.|++++.+.+...|...++..|..++ +++.+....+..+...+
T Consensus 84 ~------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 84 N------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADR----TGREAVMFSSVMRAQIS 135 (375)
T ss_pred c------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh----cchhhHHHHHHHHHHHh
Confidence 4 3566777888888888777788777777776642 22222223566677788
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+++|.+++++.+.+|||+.|++.++..++..++.++
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999987766555554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=207.05 Aligned_cols=361 Identities=11% Similarity=-0.012 Sum_probs=223.3
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 41 TGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
+...+.+| .+++++|+|..+.+++.+.+.+++.+++++.|+++|| +|||+++..+..+++++.++++++
T Consensus 26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---------
Confidence 44445555 4567999999999999999999999999999999999 699999999999999999999887
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
++++.++++|+++|++.+...+....++.+.+++ + ++.+.+.+..+.++|..+++.++
T Consensus 95 ---------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~---~----~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 95 ---------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ---R----TPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred ---------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc---c----chhHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999888988888741 1 23567788888889999999999
Q ss_pred HHhcccc-chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccc
Q 007827 201 VYVQSDV-SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI 279 (588)
Q Consensus 201 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (588)
+++.++. +||+.+...++..++.+...+...++ ++++++.+ +
T Consensus 153 ~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~--------------------- 195 (393)
T PRK09705 153 PWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSHKT------------T--------------------- 195 (393)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccCC------------C---------------------
Confidence 9888775 89988766544433333322222111 11100000 0
Q ss_pred cCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeecccc
Q 007827 280 NSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 359 (588)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (588)
. +. ...+ . +.+.....+...+....++....+.+.+...+ ..
T Consensus 196 -~-----~~----------------------~~~l---~-----~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--g~ 237 (393)
T PRK09705 196 -T-----TP----------------------VRVV---F-----TPRAWTLGVYFGLINGGYASLIAWLPAFYIEI--GA 237 (393)
T ss_pred -c-----CC----------------------cccc---c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 0 00 0000 0 01111011111112222223333333322111 11
Q ss_pred ccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439 (588)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 439 (588)
+. ...........++.+++..+.++ +.||.++| +....++.+..++........
T Consensus 238 s~--------~~ag~~~~~~~i~~i~g~~~~g~----l~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~------- 291 (393)
T PRK09705 238 SA--------QYSGSLLALMTLGQAAGALLMPA----MARHQDRR-------KLLMLALVLQLVGFCGFIWLP------- 291 (393)
T ss_pred Ch--------hhhhHHHHHHHHHHHHHHHHHHH----HHhhccch-------HHHHHHHHHHHHHHHHHHHcc-------
Confidence 10 01112233334444444444333 36665544 445556666555554443321
Q ss_pred ccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
.+.... ..++.+++.+...+.......+..| ++.+++.+++.+....++..+++.+.+.+.
T Consensus 292 ----------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 292 ----------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred ----------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1234566666666766666667774 688999999999999999999999999998
Q ss_pred hhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007827 519 RFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 568 (588)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~ 568 (588)
|..+ ++...|.+.++..++..+..+.+.+|++.+.
T Consensus 354 ~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 354 SISG---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHhC---------------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 8652 3445666767777777666677776665443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=214.86 Aligned_cols=178 Identities=14% Similarity=0.110 Sum_probs=126.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh-----cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI-----FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
++.+..+.+..+...+....+....+.+ ..+ .+.+..+.+++.+.+.++..++++++|+++|| +|||+++.++
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~ 92 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKML-GYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHH
Confidence 3333334444444444443434434433 332 24556677899999999999999999999999 6999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccc
Q 007827 98 SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQG 177 (588)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (588)
+++..++.+++.++... ....+...++++|+++|++.|...+....+++|.+|+ +.
T Consensus 93 ~~~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~------~~ 148 (502)
T TIGR00887 93 LIIMIIATVASGLSPGS------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK------KW 148 (502)
T ss_pred HHHHHHHHHHHHHccCc------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh------hh
Confidence 99988888777665210 0002367899999999999999999999999999974 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcc-----------------------ccchhhHHHHHHHHHHHHHHH
Q 007827 178 ITSFFNWYYFTFTFAMMISLTVIVYVQS-----------------------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 178 ~~~~~~~~~~~~~~g~~i~~~i~~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
|+.+.++.+....+|..+++.++..+.. .++||+.|.+.++..++..+.
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 3456788888888998888887764421 247999998776655544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=206.35 Aligned_cols=353 Identities=11% Similarity=0.035 Sum_probs=224.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
....+...++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHH
Confidence 34555555665556667777765 689999999999999999999999999999999 6999999999888777776666
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
+....++ .+.+.++++|++.|++.+...+...+++.|.++++ .++..+++.+...
T Consensus 83 ~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 137 (365)
T TIGR00900 83 FVALLGG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVR 137 (365)
T ss_pred HHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHH
Confidence 6532110 26788899999999999999999999999998642 2346789999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh-hHHHHHHHHHHhhccCCCCCCcc
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-STVQVFVAAIKKRHLKLPEEPWL 268 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (588)
++|..++|.+++++.+..||++.|++.++..+++.++.+..+.+..++ +++++.+ +..+...
T Consensus 138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------- 200 (365)
T TIGR00900 138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLRDTR---------------- 200 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHHHHH----------------
Confidence 999999999999999889999999887766555544433322111110 0000000 0000000
Q ss_pred ccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHHHHHHH-h
Q 007827 269 TLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIVYYVAL-V 346 (588)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 346 (588)
..++ ...+.+.+..... .......+.... .
T Consensus 201 -------------------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (365)
T TIGR00900 201 -------------------------------------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVA 232 (365)
T ss_pred -------------------------------------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000011111111 111111111111 1
Q ss_pred cccceeeeeccccccccCCccccccc---hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHH
Q 007827 347 QQQTYVVFQALQSDRRVGNTHFKIPA---ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423 (588)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~ 423 (588)
..+.+. ....+ .+. ........++.++...+..+ +.||.++| +.+..+..+.++
T Consensus 233 ~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-------~~~~~~~~~~~~ 289 (365)
T TIGR00900 233 LFPYVQ-------SKYLG-----RGSTHYGWVLAAFGLGALLGALLLGL----LGRYFKRM-------ALMTGAIFVIGL 289 (365)
T ss_pred HhHHHH-------HHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchh-------HHHHHHHHHHHH
Confidence 111111 11111 111 22223333344444444333 35554433 445555555555
Q ss_pred HHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHH
Q 007827 424 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~ 503 (588)
+++..... .+ +.+..+...++.+++.+...+...+++.|.+|++.|+++.|+.++..
T Consensus 290 ~~~~~~~~----------------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 346 (365)
T TIGR00900 290 AILVVGLT----------------------PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS 346 (365)
T ss_pred HHHHHHhh----------------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55555442 11 24556667788899999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007827 504 AISNYLNGFLISMVHRF 520 (588)
Q Consensus 504 ~ig~~l~~~~~~~l~~~ 520 (588)
.++..+++.+.+.+.+.
T Consensus 347 ~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 347 HAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988763
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=207.22 Aligned_cols=157 Identities=17% Similarity=0.056 Sum_probs=125.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
...+.+.++. +.+++|+|..+.++..+.+.++..++.++.|+++|| +||||.++.+.++..++.+.+..+
T Consensus 29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 3334444554 457899999999999999999999999999999999 699999999988888877776665
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+.+.+++.|++.|++.+...+...+++.|.++++ + +....++.+....+|..++|.+
T Consensus 99 ----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 99 ----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA----D--AIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred ----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh----H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999988888889999998642 1 1234666666777889999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++++.+..+|++.|++.++..++..+...
T Consensus 157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 157 GAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 99998888999999887776655554433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=216.31 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=120.7
Q ss_pred HHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 007827 48 LVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDS 127 (588)
Q Consensus 48 ~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 127 (588)
...+.+++|+|..+.|++.+.+.+++.++++++|+++|| +||||++..+.++.+++.+..+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 445678999999999999999999999999999999999 699999988888777766655542100
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc
Q 007827 128 GACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV 207 (588)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~ 207 (588)
...+.+.+++.|++.|++.+...|+..++++|.+|++++ +.+.+++..+.++|.++++.+..++.+.+
T Consensus 118 ------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r------g~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 118 ------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR------GRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred ------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce------eeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 013678899999999999999999999999999975322 24577777788899999988887665542
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHh
Q 007827 208 ---SWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 208 ---g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|+..|.+.++..++..++.++
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHH
Confidence 5888887766655444333333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=209.51 Aligned_cols=378 Identities=12% Similarity=0.032 Sum_probs=231.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh-----hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT-----ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
...+.+..++...++....+.+|.|.+ ++|++..+ .+++.+.+.+...++.++.|+++|| +|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHH
Confidence 344445666777777777888888875 68888665 3788899999999999999999999 6999999998888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++..++... .+++.+++.|++.|++.+ ..+...+++.|.++++ + ++.
T Consensus 94 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~--~~~ 142 (408)
T PRK09874 94 MGIVMVLMGLA------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRN----K--SGW 142 (408)
T ss_pred HHHHHHHHHHH------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh----h--hhH
Confidence 88777766654 357788899999999865 4566777888887532 1 235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhcc
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHL 260 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
..+......++|..++|.+++.+.+.++|++.|++.++..++..+......++..+..+++++ .+..+. .+ .
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~--~- 214 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHMREV----VT--S- 214 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHHHHH----HH--h-
Confidence 677888888999999999999998889999999987776655554443332321110000000 000000 00 0
Q ss_pred CCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHH
Q 007827 261 KLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIV 340 (588)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (588)
. ++.+....... ....
T Consensus 215 --------------------------------------------------------~-----~~~~~~~~~~~---~~~~ 230 (408)
T PRK09874 215 --------------------------------------------------------L-----KNPKLVLSLFV---TTLI 230 (408)
T ss_pred --------------------------------------------------------C-----cCCchHHHHHH---HHHH
Confidence 0 00000000000 0000
Q ss_pred HHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
..............+......... ........+.....++.++..+...+ +.||+++| +.+..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~~ 297 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVS--NIAFISGMIASVPGVAALLSAPRLGK----LGDRIGPE-------KILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccc-------hhHHHHHHH
Confidence 111111111111101000000000 00000111112223333344444333 46776655 344455544
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF 500 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~ 500 (588)
..++++..... .+.+......++.+++.+...+...+++.+..|++.||+.+++.+
T Consensus 298 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 298 SVLLLIPMSFV------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred HHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 44444433322 233444556677888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
....+|..+++.+.+.+.+.. ++++.|++.+++.+++.+..+...
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887543 456788888888887766655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=214.69 Aligned_cols=403 Identities=14% Similarity=0.069 Sum_probs=238.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|..+..+.+..++..+....+...+|.+ .+++|.+..+.+|+.+.+.++..++.++.|+++|| +|||++++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3444455556666666666666666665 57899999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.++ .+.+.++++|+++|+|.+...+.....+.+.+++ . +.++.++
T Consensus 83 ~~~~~~~~a------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~---~--~~r~~~~ 133 (495)
T PRK14995 83 LASLAAAFS------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTE---E--KQRNMAL 133 (495)
T ss_pred HHHHHHHHc------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---H--HHHHHHH
Confidence 999988876 4678899999999999999888777777777642 1 2345678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhh-HHH---H--HHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-TVQ---V--FVAAIK 256 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~ 256 (588)
+++....++|..+||.+++++.+++||||.|++...+.++.+++..+..|+.++++.++.+... ... . +....+
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~ 213 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK 213 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776666555544444432221111111111 000 0 000011
Q ss_pred hhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH
Q 007827 257 KRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA 336 (588)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (588)
... +...+++. ..................+.+...+..+++.+++ +......+..+.
T Consensus 214 ~~~-~~~~~~~~-----------------~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~-----~~~~~~~~~~~~ 270 (495)
T PRK14995 214 TAL-KGFLSLWV-----------------TSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH-----RIILSGVVMAMT 270 (495)
T ss_pred hcc-ccCCchHH-----------------HHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC-----cccHHHHHHHHH
Confidence 000 00000000 0000000000000000000011112223322221 111111111111
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
....++...... +.+.+...|. -....+.......++..+..++..+ +.||.++| +.+..
T Consensus 271 ~~~~~~~~~~~~-------~~~lq~v~g~--s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~ 330 (495)
T PRK14995 271 AMITLVGFELLM-------AQELQFVHGL--SPLEAGMFMLPVMVASGFSGPIAGI----LVSRLGLR-------LVATG 330 (495)
T ss_pred HHHHHHHHHHHH-------HHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCch-------HHHHH
Confidence 111111111111 1111111120 0001112222233444445555433 47776654 45566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
|+++.+++++.+.... ...+.+......++.|++.+...++....+.+.+|++.++.++
T Consensus 331 g~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~ 389 (495)
T PRK14995 331 GMALSALSFYGLAMTD---------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAG 389 (495)
T ss_pred HHHHHHHHHHHHHHhc---------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHH
Confidence 7777766665554321 1123344455678889999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
++.++...+|+.+|+.+.+.+.+.
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=205.88 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=131.4
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
+...+++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++..++.++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 344455788999999999999999999999999999999999 699999999998888888877776
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 007827 125 QDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
.+++.++++|++.|++.+...+...+++.|.+|+ +.++..+++.....++|..++|.+++++.
T Consensus 80 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 80 -----------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPA------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999863 22346788888999999999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+..+|++.|++.++..++..++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhhe
Confidence 88999999998777665555444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=209.13 Aligned_cols=181 Identities=11% Similarity=0.044 Sum_probs=143.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.+|+....+.+..+++........... ..+++++|+|..+.+++.+++.++..+++++.|+++|| +|||+++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHH
Confidence 345555555555555555555544444 47889999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.++++++ .++..+++.|++.|++.+...|....++.|.+|+ +.++.
T Consensus 83 ~~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~rg~ 132 (412)
T TIGR02332 83 WGIASTATMFA------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA------YFRAR 132 (412)
T ss_pred HHHHHHHHHHh------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH------HHHHH
Confidence 99988888776 3567889999999999999999888899999963 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc------ccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQS------DVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
..++++....+|.++++.+++++.+ ..|||+.|++.++..++..++.++..|+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 6888888999999999999988763 3699999998777665544444443343
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=210.14 Aligned_cols=142 Identities=21% Similarity=0.301 Sum_probs=116.6
Q ss_pred chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhH
Q 007827 59 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 138 (588)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (588)
..+.+++.+++.++..++.++.|+++|| +|||++++.+.++..++..++.+... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 127 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF---------------------ALSV 127 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc---------------------ccch
Confidence 8999999999999999999999999999 69999999999998888877765422 1345
Q ss_pred HHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH---HHhccccchhhHHHH
Q 007827 139 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---VYVQSDVSWAWGLGI 215 (588)
Q Consensus 139 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~---~~~~~~~g~~~~~~~ 215 (588)
+.++++|+++|++.+...+...++++|.+++++ ++...++++.+.++|..+++.++ ....+..+||+.|++
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 678999999999999999999999999997422 23557888889999999999998 666677899999998
Q ss_pred HHHHHHHHHHHHH
Q 007827 216 PAFMMFLSCAMFF 228 (588)
Q Consensus 216 ~~~~~~~~~~~~~ 228 (588)
.++..++.++..+
T Consensus 202 ~~~~~~~~~~~~~ 214 (481)
T TIGR00879 202 QLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 6655554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=205.15 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=126.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.|.+. .+.+++.+++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+.+.++
T Consensus 19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHH--------
Confidence 44444 44567788999999999999999999999999999999999 699999999999999988887776
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+++.++++|++.|++.+...+.....+.+.+++ + ++...++...+.++|..+++.+
T Consensus 89 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 89 ----------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD---K----RGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ----------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc---c----cHHHHHHHHHhcchhHhHHHHH
Confidence 4677889999999999998877777777877752 1 2456788888888898877777
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
.+.+.+..|||+.|++.++..++..+..+
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77777778999999987776655544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=211.55 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=121.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh-hhH-----HHHHHHHHHHHhhhhhhhhhhccccchhHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT-ATT-----LINIFSGTTNFATLLGAFLSDTYFGRYKTLGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~-~~~-----~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~ 96 (588)
++......+..+++.+.+..+ .+...++.++++.+... ..+ +.++..++..++++++|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 344445556667777765554 44555777777544322 122 2466778899999999999999 699999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
++++++++.++++++.+..+. ....+..++++|+++|++.|+..+...++++|.+|++ +|
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~----~R 152 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATI----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR----KR 152 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHH----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC----CC
Confidence 999999999998887431100 0001124889999999999999999999999999742 22
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHH
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMF 221 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~ 221 (588)
+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 153 --g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 153 --GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 23466666666777777766554332 25899999998665443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=205.03 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=118.1
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+...+| .+++++|+|.++.|++.+.+.+++.+++++.|+++|| +|||+++..+......+. ......
T Consensus 10 ~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~-~~~~~~---------- 76 (368)
T TIGR00903 10 FSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAA-GRLLDP---------- 76 (368)
T ss_pred HHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH-HHHHHh----------
Confidence 334444 5567999999999999999999999999999999999 699987665444433332 222221
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.++..++++|+++|++.+.. +.....++|.+|+ +.++.+.++...+..+|.++++.++++
T Consensus 77 -------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~------~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 77 -------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE------ERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred -------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25778999999999999864 4455666888863 223467888899999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.+.+|||+.|++.++..++..++.++..|
T Consensus 137 l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 137 IYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999866665555444443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=214.16 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=122.7
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
..+++ .+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.+++.++.
T Consensus 39 ~~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------- 105 (455)
T TIGR00892 39 TVFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------- 105 (455)
T ss_pred hhhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh-----------
Confidence 33344 4567999999999999999999999999999999999 7999999999888888887776652
Q ss_pred CCCCCCCCCCCchhHHHHH-HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 124 NQDSGACPGPTPWQLAFLF-TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
+.+.++ ..|++.|++.+...+...+++.+.++ + .++...++.+.+..+|..++|.++++
T Consensus 106 -------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~----~r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 106 -------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY---R----RRPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred -------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH---h----hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344554 45688899998876667778888774 1 13467888888999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+.+.+|||++|++.+++.++.++..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9998999999999887666555444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-21 Score=204.26 Aligned_cols=173 Identities=15% Similarity=0.188 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC---CCchhhhH---HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFN---MKSITATT---LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g---~s~~~~~~---~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+....+..+++.+.... .+++..++.++++ .+..+.+. +.+...++..++++++|+++|| +||||++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 33444456666666555 4556667778874 55554333 3444555555999999999999 699999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.++.++++++.+.... -..++..+++.|+++|++.|...+...++++|.+|++ +| +
T Consensus 102 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~----~r--g 159 (432)
T PRK10406 102 MMCFGSLVIACLPGYETI----------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG----RK--G 159 (432)
T ss_pred HHHHHHHHHhhcCCchhH----------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC----cc--c
Confidence 999999888776321000 0013456889999999999999999999999999742 22 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMFL 222 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~~ 222 (588)
...+..+...+.|..+++.+...+. ..+|||++|++.++..++
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 4566666677778777776654443 257999999987665443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=207.15 Aligned_cols=156 Identities=15% Similarity=0.045 Sum_probs=118.3
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
...+|+.++ |+|..+.+++.+.+.++..++++++|+++|| +|||++++.+.++.+++.+.+.+....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 9999999999999999999999999999999 699999999998888888777664210
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH-HHHHHHHHhc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM-ISLTVIVYVQ 204 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~~~i~~~~~ 204 (588)
..+...+++.|++.|++.+...+.....+.+++++ +.++.+.++++.+.++|+. .+|+++..+.
T Consensus 117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 02466788899999999999888777888888863 2234567888888888864 4555443333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHh
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
...|||+.|++.++..++..++..+
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999877665554444333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=204.58 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=133.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++......+..+...+..+... ++..++++++|+|+.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIF-YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 4444444455555555554543 44456678999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+.+.++ .+.+.++++|++.|++.+...+....++.|.+++++ ++.+.
T Consensus 95 ~~~~~~~~~------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~ 144 (426)
T PRK12307 95 VGTGLSGLA------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKAS 144 (426)
T ss_pred HHHHHHHHH------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhh
Confidence 988887776 357789999999999999999999999999987421 23567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
+++..+..+|.++++.+.+.+.+.+|||+.|++...
T Consensus 145 ~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 145 AFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 788888899999999999998888999999987543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=202.11 Aligned_cols=176 Identities=11% Similarity=0.116 Sum_probs=123.2
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhc--CCCchhhhHHH-----HHHHHHHHHhhhhhhhhhhccccchhH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIF--NMKSITATTLI-----NIFSGTTNFATLLGAFLSDTYFGRYKT 93 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~lsDr~~Grr~~ 93 (588)
+++|.....++..+++.+....+....+.++.+++ +.++.+ +++. ++..++..+++++.|+++|| +|||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHH
Confidence 33455555566667777776665555666666665 677764 4443 24445677888999999999 699999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.+++.++.++++++.+..+. .......++++|+++|++.|...+....++.|.+|++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~--- 157 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTI----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN--- 157 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHH----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---
Confidence 999999999998888886431100 0001235888999999999999999999999998742
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhc--------cccchhhHHHHHHHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMM 220 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~ 220 (588)
+| +...+....+..+|..++..+...+. ..+|||++|++.++..
T Consensus 158 -~r--g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 158 -KK--AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred -CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 22 34456666677777777766655543 3579999998876644
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=202.26 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=140.0
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+++|+......+..+...+..+......+ .+++++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45566666666777777777666655555 5578899999999999999999999999999999999 699999999988
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..++.+++.+. .+++.+++.|++.|++.+...+...+++.|.++++ .++
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~ 135 (405)
T TIGR00891 86 LFSAGTLACGFA------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRN 135 (405)
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhh
Confidence 888888777665 35677889999999999999999999999999742 223
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS--WAWGLGIPAFMMFLS 223 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g--~~~~~~~~~~~~~~~ 223 (588)
...++.....++|..+++.+++.+.+..+ ||+.|.+..+..++.
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 56888888899999999999998887666 999998765544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-21 Score=196.26 Aligned_cols=345 Identities=20% Similarity=0.248 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....+......+.....++.|. +++|.+..+.+++.+...++..++.++.|+++|| +||||.+..+.++..++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHH
Confidence 34455666777777777788776 5679999999999999999999999999999999 699999999999988888877
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.+. .+.+.+++.|++.|++.+...+...+++.|.++++ .++..+++.+..
T Consensus 82 ~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 131 (352)
T cd06174 82 AFA------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAG 131 (352)
T ss_pred HHh------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHH
Confidence 765 35678899999999999999999999999999742 223568888899
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcc
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWL 268 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (588)
.++|..++|.+++.+.+..+|++.+++..+..++..++..+..| ..
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------------------- 177 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------LL--------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HH---------------------
Confidence 99999999999999998889999999877766655544332210 00
Q ss_pred ccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 007827 269 TLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQ 348 (588)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (588)
+.. .+................
T Consensus 178 --------------------------------------------------------~~~---~~~~~~~~~~~~~~~~~~ 198 (352)
T cd06174 178 --------------------------------------------------------LLL---ALAFFLLSFGYYGLLTYL 198 (352)
T ss_pred --------------------------------------------------------HHH---HHHHHHHHhHHHHHHHHH
Confidence 000 000001111111111111
Q ss_pred cceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHH-HHHHHHHHHHHHHHH
Q 007827 349 QTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ-RMAIGMILAIFTMII 427 (588)
Q Consensus 349 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~g~~l~~~~~~~ 427 (588)
+.+.....+..+ ...........++..++.++..+ +.||.++| + .+..+.++..++++.
T Consensus 199 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~ 258 (352)
T cd06174 199 PLYLQEVLGLSA---------AEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLL 258 (352)
T ss_pred HHHHHHhcCCCH---------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHH
Confidence 111110000000 11223344445555555555444 47887765 3 566777777777666
Q ss_pred HHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHH
Q 007827 428 SGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISN 507 (588)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~ 507 (588)
.... .+.+......++.+++.+...+....++.|..|++.|++.+|+.+....++.
T Consensus 259 ~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T cd06174 259 LALA------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG 314 (352)
T ss_pred HHHh------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 6543 2355667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 007827 508 YLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL 558 (588)
Q Consensus 508 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~ 558 (588)
.+++.+.+.+.+.. ++...+.+.+++.+++.+..+
T Consensus 315 ~i~~~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 315 ALGPLLAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 99999999987532 345677777777777765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=207.43 Aligned_cols=146 Identities=14% Similarity=0.230 Sum_probs=119.8
Q ss_pred HHHHhcCCC---chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 50 YLTTIFNMK---SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 50 yl~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
-+.++++++ ..+.+++.+++.++..++.++.|+++|| +|||++++++.++..++.++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~--------------- 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS--------------- 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 356789999 8999999999999999999999999999 699999999999888888777765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
.+++.+++.|++.|++.+...+...+++.|.++++ + ++...++...+..+|.++++.++..+.+
T Consensus 178 ---------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~---~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 241 (505)
T TIGR00898 178 ---------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK---Q---RAIVGTLIQVFFSLGLVLLPLVAYFIPD- 241 (505)
T ss_pred ---------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChh---h---hHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 35788999999999999999999999999999742 1 2345666677788898888888766543
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 007827 207 VSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 207 ~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
||+.|++.++..++..+..++
T Consensus 242 --wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 --WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh
Confidence 999998877766555544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=198.83 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....+......+...+.+|. +++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHH
Confidence 334444455555555566666665 467899999999999999999999999999999999 699999999999999988
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+++.++ .+++.+++.|++.|++.+...+....++.|.++++ + ++...+.+
T Consensus 83 ~l~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~ 132 (382)
T PRK10091 83 AMFTLS------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG----K--VTAAVAGM 132 (382)
T ss_pred HHHHHh------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH----H--hhHHHHHH
Confidence 887776 35788999999999999988888888888887531 1 23457777
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+..+|..++|.+++++.+..|||+.|++.++..++..+.
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999998899999999877765554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=201.98 Aligned_cols=168 Identities=23% Similarity=0.340 Sum_probs=139.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..++..+........++.++.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++.+++.+++.+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhh
Confidence 45556666666666777768889999999999999999999999999999999999 69999999999998888555555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+. +.+.++++|++.|++.+...+...+++.|.++++ .++..++..+...+
T Consensus 82 ~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 82 AS------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFS 131 (352)
T ss_dssp HC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHH
T ss_pred hh------------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhh
Confidence 41 3458999999999999999999999999999742 23456889999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|..++|.+++++.+.++|++.|++.++..++..++...
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence 999999999999998899999999988877777654333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=195.87 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHhhhhhh---hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSS---NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.+++..++...++|.+.- ...+++.++.++|.+|.|.+.+.+.+.+.++..+.|.++|| .+.|+.+-.++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHH
Confidence 5666777788888887653 45678888999999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
..+++.++ .+...+.+..++.|+..|.-+|++...++.+|+.++ |++..+
T Consensus 107 ~nil~Gfs------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s 156 (448)
T COG2271 107 VNILFGFS------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS 156 (448)
T ss_pred HHHHHhhh------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence 99998887 357788899999999999999999999999997432 345699
Q ss_pred HHHHHHHHHHHHHHHHH--HHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVI--VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+++.+.|+|+.+.|++. +++..+++||..|+.+++..++..++.++.-++
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999 899988899999999988776655555544444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=202.88 Aligned_cols=393 Identities=9% Similarity=-0.027 Sum_probs=217.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+.+..++..++++.+.++++.|+++++|+|..+.|++.+++.++..+++++.|+++|| +||||+++++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 345555566777777777889999999999999999999999999999999999999999999 6999998876665554
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+..........+... .......+++.++.+.+.....+.. .++.++ . .+.++..++
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~--~~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPLLQ----------------YNILLGAIVGGIYLGFGFLAGAGAI----EAYIER--V--SRRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhhhccchhhh----hhHHHH--H--Hhhccccch
Confidence 433221110000000 0011112223333333333333322 222211 1 111234566
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+..+++.++++...++ + +
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~----- 205 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-L------------G----- 205 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-h------------h-----
Confidence 6777789999999999998876 5899999887766655555444433321110000000 0 0
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 342 (588)
+ ++ .....+ +. .+....+....... .......+.
T Consensus 206 ------------~----~~--~~~~~~--~~-------------------------~~~l~~~~~~~l~l~~~~~~~~~~ 240 (420)
T PRK09528 206 ------------A----NA--SAVSLK--DA-------------------------LALLKLPKFWFLVLYVIGVACFYD 240 (420)
T ss_pred ------------c----cc--ccccHH--HH-------------------------HHHccCCCeEeehHHHHHHHHHHH
Confidence 0 00 000000 00 00000011101111 111111111
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
....+.+.+...+.. +...+ . ...+.+..++.+...++.++..+ +.||+++| +.+..+.++..
T Consensus 241 ~~~~~~~~~~~~~~~--~~~~~---~-~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~l~~ 303 (420)
T PRK09528 241 VFDQQFPNFFASFFA--TPEQG---T-RVFGYLNSFQVFLEALIMFFAPF----IINRIGAK-------NALLLAGTIMA 303 (420)
T ss_pred HHHHHHHHHHHHHHh--ccCcc---h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcc-------hhhHHHHHHHH
Confidence 122222222111100 00110 0 00112233333333444444333 48887776 34555666666
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHH-HHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFV 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~-~~~ 501 (588)
++++..+.. .+.++++...++.+++.....+....++.+.+|++.+++..+. +++
T Consensus 304 ~~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 359 (420)
T PRK09528 304 VRIIGSGFA------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQF 359 (420)
T ss_pred HHHHHHHhc------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHH
Confidence 665555542 2344555667777777777777778899999999999988766 677
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
...+|..+++.+.+.+.|.. +++..|...+++.++..++.+...+
T Consensus 360 ~~~lg~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 360 AKQLGAVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999998754 3456788877777766655555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=198.51 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=133.7
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
++|..+...+..++...........+|. +.+++|+|..+.+++.+.+.++..++++++|+++|| +||||++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 4455555555555555554455555555 467899999999999999999999999999999999 69999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.++.+++.++ .+++.+++.|+++|++.+...+...+++.|.+|+ ++ ++..
T Consensus 83 ~i~~~l~~~~------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~----~~--r~~~ 132 (394)
T PRK03699 83 ILAVAGLMFS------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG----KQ--RGSR 132 (394)
T ss_pred HHHHHHHHHc------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhccc----ch--HHHH
Confidence 8888777765 3567788999999999999888888999998853 12 2345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+..+....+|+.++|.+.+++. +..|||+.|.+.++..++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 66666677888889999888765 4579999998877655544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=206.23 Aligned_cols=395 Identities=14% Similarity=0.138 Sum_probs=231.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+..+...+........+| .+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.++..++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 8 MLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHh
Confidence 3444455555444444454 5567899999999999999999999999999999999 6999999999999998888877
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.+ .++..++++|+++|++.+...+...+++.|.+|+ +.++.+.++++...
T Consensus 86 ~~------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~ 135 (485)
T TIGR00711 86 VA------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP------EKRGRAMAIWGLTV 135 (485)
T ss_pred Cc------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH
Confidence 65 3567889999999999999999999999999963 22346788888999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHH----HHHhhccCCCCC
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVA----AIKKRHLKLPEE 265 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 265 (588)
.+|..++|.+++++.++++||+.|++.+...++.+++..+..++.++++ .++.+.....+.. .......+.++.
T Consensus 136 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~ 213 (485)
T TIGR00711 136 LVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPER 213 (485)
T ss_pred HHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999877666555554443333311111 1111111100000 000000000000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhh---hcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDK---AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 342 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (588)
.+. ..+....... .........+.+.+.+..+++.++ +++.....+...+....++
T Consensus 214 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 272 (485)
T TIGR00711 214 GWF----------------DSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFK-----YRNFTIGCVYMSLLGLGLY 272 (485)
T ss_pred CCC----------------CchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHc-----CCChHHHHHHHHHHHHHHH
Confidence 000 0000000000 000000000000011111121111 1111111111111122222
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
......+.+. ....|.+. ...........++.+++.++..+ +.||.++| +.+.++..+.+
T Consensus 273 ~~~~~~p~~~-------~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~g~~~~~ 332 (485)
T TIGR00711 273 GSFYLLPLYL-------QQVLGYTA--LQAGLHILPVGLAPMLSSPIAGR----MGDKIDPR-------KLVTIGLILYA 332 (485)
T ss_pred HHHHHHHHHH-------HHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcH-------HHHHHHHHHHH
Confidence 2211111111 11112000 01122233334444555555443 36776554 45666777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
+++.+..... ..+.+.+..+...++.+++.+...++......+..|++.|++++|+.++.
T Consensus 333 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 333 VGFYWRAFTF--------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHhccC--------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 6666554210 11234455566678889998888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007827 503 FAISNYLNGFLISMVHR 519 (588)
Q Consensus 503 ~~ig~~l~~~~~~~l~~ 519 (588)
..+|+.+++.+.+.+.+
T Consensus 393 ~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 393 RQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988865
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-20 Score=194.99 Aligned_cols=171 Identities=8% Similarity=0.084 Sum_probs=131.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..+|.+....+..+....+.+....+++.++ +++|+|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 3456666666777777777777777888887 5789999999999999999999999999999999 6999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++...+..... . ..+++.+++.|++.|++.+...+...+.+.+.+++ +.++.
T Consensus 88 ~~~~~~~~~~~~~-~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~------~~~g~ 141 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ------DNLSS 141 (402)
T ss_pred HHHHHHHHHHHhc-c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH------HHHHH
Confidence 8877655432110 0 02466778899999999887777777777787763 22346
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHH
Q 007827 181 FFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGIPAFM 219 (588)
Q Consensus 181 ~~~~~~~~~~~g~-~i~~~i~~~~~~~~g~~~~~~~~~~~ 219 (588)
+.++++...++|. .++|.+++++.+.+||+..++.....
T Consensus 142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 6888888888886 57899999988888876665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=195.39 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=138.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+....+....+.....+.+|. +.+++|.|..+.+++.+.+.++..+++++.|+++|| +||||.+..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHH
Confidence 33333334444444554555555554 467899999999999999999999999999999999 6999999999988888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.+.+... .+.+.+++.|++.|++.+...+...+++.|.+|+ +.++..++
T Consensus 83 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 132 (385)
T TIGR00710 83 SSLGLALS------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPG------EELSRIYS 132 (385)
T ss_pred HHHHHHHH------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc------HHHHHHHH
Confidence 88777665 3567788999999999999999999999999863 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+.+...++|..++|.+++++.+.++|++.|++.++..++..+.....
T Consensus 133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999988999999988776665555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=205.18 Aligned_cols=173 Identities=9% Similarity=-0.004 Sum_probs=123.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.........++..+..+.+...++ ++.+++|+|..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 3334444444444555455444444 5678999999999999999999999999999999999 6999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+.++++++ .++..+++.|+++|++.+...+ ...+++|.+|++ + ++.+.+
T Consensus 114 ~~~~~~~~------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~----~--rg~a~g 162 (476)
T PLN00028 114 AVFCMSLV------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK----I--VGTANG 162 (476)
T ss_pred HHHHHHHh------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh----h--eeHHHH
Confidence 87777665 3466778899999999886543 456778888631 2 235577
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----c-----ccchhhHHHHHHHHHHHHHHHHHh
Q 007827 184 WYYFTFTFAMMISLTVIVYVQ----S-----DVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~----~-----~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 766666777777766554432 1 258999999887766555444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-20 Score=194.26 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHH-HHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLG-FASVASFL 103 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i 103 (588)
.+..++..++..++.....+.++.|+++++|+|.++.|++.+...+ +..++.+++|+ +|| +||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHH
Confidence 3445556777788877888999999999999999999999876655 55555555565 999 69998754 44444445
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+..+..++ .+++.+++.+.+.+...+...|...++..|..+ ++.+..+...+
T Consensus 95 ~~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 146 (393)
T PRK15011 95 ACTLFAWN------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHAD----KTGREAVMFSS 146 (393)
T ss_pred HHHHHHHh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh----hccchHHHHHH
Confidence 55555554 244555444444444444566766777766543 12222223346
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
....+.++|.+++|.+++++.+++|||..|++.++..++..+...+..|
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7777889999999999999999899999999887766555554444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=202.42 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=135.5
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
++|+....+.+..+...+..+.....+ .++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 445555555555555566555554444 45668999999999999999999999999999999999 6999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+++.+.+.+. .+++.+++.|++.|++.+...+...+++.|.+++ +.++.
T Consensus 95 ~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~ 144 (496)
T PRK03893 95 FSVGTLACGFA------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK------HLRNK 144 (496)
T ss_pred HHHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHH
Confidence 88888877775 3577889999999999999999899999999863 22345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
..+.++...++|..++|.+.+++.+.++||+.|++..+
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 67888889999999999999999999999999887544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=195.05 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=129.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
.|..+.+....++..+......+.+|.|.. ++|+|..+.|++.+.+.++..+++++.|+++|| +|||+.+..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345666677777888887778888888875 689999999999999999999999999999999 699999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++...+.++ .+++.++++|+++|++.+...+...+.+.+..++ +.++..+
T Consensus 83 ~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLM------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS------RNRGRLL 132 (381)
T ss_pred HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHH
Confidence 888777765 3577888999999999999888777777776653 1234678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhh
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAW 211 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~ 211 (588)
+.+..+.++|..+||.+++.+.+...+..
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 88888999999999999998877543333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=199.78 Aligned_cols=150 Identities=10% Similarity=0.100 Sum_probs=124.7
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
+++++..+.|++.+.+.+++.++++++|+++|| +|||+++..+.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 69999999998888887766654421
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc-chhhH
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWG 212 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~ 212 (588)
.+...+++.|+++|++.+...+....+++|.+|+ +.++.+.++...+.++|.+++|.+++++.+.+ |||+.
T Consensus 129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 2356789999999999999999999999999963 22356788888899999999999999998884 99999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 007827 213 LGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (588)
|++.++..++..++.+...+
T Consensus 201 f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred hhhhhHHHHHHHHHHHHHhc
Confidence 99887766555444444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=195.70 Aligned_cols=156 Identities=14% Similarity=0.051 Sum_probs=127.6
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
...+.+|. +.+++|.+..+.++..+++.+++.+++++.|+++|| +|||++++.+.+++.++.+++.++
T Consensus 34 ~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a---------- 101 (413)
T PRK15403 34 LIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT---------- 101 (413)
T ss_pred hhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc----------
Confidence 33344444 567899999999999999999999999999999999 699999999999888888887775
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+++.++++|+++|++.+...+...+++.|.+++++ ++..++++....++|..++|.+++
T Consensus 102 --------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 102 --------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999988766666788888886321 234578888889999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+.+++|||+.|++.++..+++.+..++
T Consensus 162 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 162 ALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988889999999887766666554333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=194.17 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=133.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|+.........+......+.... ..+++.+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHH
Confidence 33333333444444444443333 4445567899999999999999999999999999999999 699999999988888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.+. .+.+.+++.+++.|++.+...+...+++.|.+|++ .++...
T Consensus 94 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~ 143 (398)
T TIGR00895 94 VFTLLCALA------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAV 143 (398)
T ss_pred HHHHHHHHc------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhH
Confidence 877776654 35677889999999999999999999999998642 223567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
++.....++|..+++.+++++.+..||++.|++.++..++..++
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 88888999999999999999999899999998875544444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=191.03 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++..++.......++.. .++++.++.+.+++.+.+.+.+.++.+++|+++|| +||||+++++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHH
Confidence 3344455666666554444445544 57899999999999999999999999999999999 699999999999988877
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+.... + .++.|+++|++.+...|...+++.|.+|+ +.++.+.++.
T Consensus 83 ~~~~~~~------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~------~~~~~a~~~~ 129 (393)
T PRK11195 83 LLMLFGI------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG------EKLVKANGWM 129 (393)
T ss_pred HHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHH
Confidence 7665542 2 26789999999999999999999999974 2245678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
....++|..+||.+++++.+. .|+..+.+.....+++.
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 888999999999999998875 47777766555444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-19 Score=188.36 Aligned_cols=357 Identities=11% Similarity=-0.039 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH-HHHHHH-
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA-SFLGML- 106 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~-~~i~~~- 106 (588)
+....+....++....+++|.|++ ++|+|..+.|++.+.+.+...+++++.|.++|| +||++........ ..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHH
Confidence 344455555555566788889985 689999999999999999999999999999999 6985443222211 111111
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+..+ .+++.+++.|++++.+.+...|...++..+ .+ ++ ++..++...
T Consensus 87 ~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~---~~----~~~~~g~~~ 134 (382)
T TIGR00902 87 FSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ---KQ----FGLDYGKVR 134 (382)
T ss_pred HHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH---HH----cCCCccHHH
Confidence 11122 357788889999999988888888787654 22 11 124588888
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCC
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEP 266 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
...++|.+++|.+++++.+++|||..|++......+.+ +.+...++. ++++++.+.
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~-------------------- 190 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAIPED-------------------- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCcccccc--------------------
Confidence 89999999999999999999999999887655432222 222222211 010000000
Q ss_pred ccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 007827 267 WLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVAL 345 (588)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (588)
+. ...+ .+ .+....++.... ....+........+
T Consensus 191 --------------~~-~~~~-------------------------~~-----~~~l~~~~~~~~l~~~~l~~~~~~~~~ 225 (382)
T TIGR00902 191 --------------ES-QGDS-------------------------AF-----IALLKNPMNLRFLAAVCLIQGAHAAYY 225 (382)
T ss_pred --------------cc-ccch-------------------------hH-----HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00 000011112111 11112222222222
Q ss_pred hcccceeeeeccccccccCCccccccchhh---hhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASY---AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
...+.++ .+ .| .+.... .....+..++..++.+++ .||+ +.++.+.++.++..
T Consensus 226 ~~~~~~l-------~~-~g-----~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 226 GFSAIYW-------QA-AG-----ISASATGLLWGIGVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACV 281 (382)
T ss_pred HHHHHHH-------HH-CC-----CCHhHHHHHHHHHHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHH
Confidence 2221111 11 22 222222 223333334444433332 4554 34466778888888
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH-H
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-V 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~-~ 501 (588)
+.....+.. .+.+.++...++.+++.+...+....++.+. |++.|++++++++ +
T Consensus 282 ~~~~~~~~~------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~ 336 (382)
T TIGR00902 282 GRWAIIGAI------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNAL 336 (382)
T ss_pred HHHHHHHhH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence 777666543 3556667678999999999999999999988 9999999999986 5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNF 554 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~ 554 (588)
...+|..+++.+.|.+.+.. +. ..|+..+++.+++.
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHH
Confidence 67899999999999998754 22 46777777776654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=191.55 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=128.6
Q ss_pred HHHHHhhhhhhhHHHH--HHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 35 FEKLGTTGTSSNLLVY--LTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~y--l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
...+.+.....++|.+ +++++|.|+.+.+++.+.+.++..+++++.|+++|| +|||+.+..+.++..++.+++.+.
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~- 91 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV- 91 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 3344444444445544 568999999999999999999999999999999999 699999999988888777777665
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+++.|+++|++.+...+...+++.|.++++ + +...++......++|
T Consensus 92 -----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 92 -----------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ---K---ANRVFATIMPLVALS 142 (401)
T ss_pred -----------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH---H---HHHHHHHHHHHHHHH
Confidence 35677889999999998887777778888988632 1 234566666778889
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..++|.+++++.+.+|||+.|++..+..++..++.+.
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899999998877666555444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=190.21 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=136.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
+.+|.++......++.........+.+|.+ .+++|+|+.+.+++.+.+.++..++.++.|+++|| +||||.+..+.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence 345666666666666666655555556554 57899999999999999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+.+... .+.+.+++.|++.|++.+...+....+..|.++. +.++.
T Consensus 83 ~~~~~~~~~~~------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~ 132 (394)
T PRK11652 83 FILGTLVALFA------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG------TQLRH 132 (394)
T ss_pred HHHHHHHHHHH------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH------HHHHH
Confidence 88887776665 3567788999999999888777777777787752 22345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
..+.+..+..+|..++|.+++.+.+..|||+.|++.++..++..+
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 677777888899999999999998888999999987665544433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=198.19 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=120.7
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 47 LLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 47 l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
..+++++ +|+|.++.+++.+.+.++..+++++.|+++|| +|||+.+..+.++.+++.+++......
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3446665 59999999999999999999999999999999 699999999888888877766553210
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh-cc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV-QS 205 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~-~~ 205 (588)
..+...+++.|++.|++.+...+.....+.|.+|+++ ++.+.++++...++|+.+++.+.+.. ..
T Consensus 115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 0245667888999999999988888888899886321 24568888888999999988877654 44
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHh
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..+||+.|++.++..++..++.++
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999877766655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=192.96 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=126.4
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
...+++.+++|+|..+.+++.+...++..++.++.|+++|| +|||+.++.+.++..++.+++.++
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-------------- 80 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS-------------- 80 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh--------------
Confidence 34457788999999999999999999999999999999999 699999999999988888887776
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH-HHHHHhc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL-TVIVYVQ 204 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-~i~~~~~ 204 (588)
.+.+.+++.|++.|++.+...+...+++.|.+++++ ++...++.....++|..++| .+++.+.
T Consensus 81 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 81 ----------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred ----------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999997422 23457777788899999999 5667777
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHh
Q 007827 205 SDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+..+|++.|++.++..++..++.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7789999998877655554444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-19 Score=187.88 Aligned_cols=387 Identities=11% Similarity=0.013 Sum_probs=217.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-r~~l~~~~~~~~i~~~~~~~ 110 (588)
..++...++-.+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +|| |+++.++.++.+++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655677999999999999999999999999999999999999999999 665 66777777776666656555
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCC-------CCCCCCccchhhhhh
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFN-------PNTESGKQGITSFFN 183 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 183 (588)
. .+++.+++.|++.+++.+...+...++..+... ++ ..+. +.+
T Consensus 89 ~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~----r~~- 138 (418)
T TIGR00889 89 V------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-FPPI----RVM- 138 (418)
T ss_pred h------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-CCCe----eee-
Confidence 4 245667788888888877666655544322111 10 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
..+|.+++|.+++.+.....|. +|++.++..++..++.+ ..|+.++.+.+++. . ..+ +.+.
T Consensus 139 -----G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~-~-~~~-------~~~~--- 199 (418)
T TIGR00889 139 -----GTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKM-S-IKV-------MLGL--- 199 (418)
T ss_pred -----hhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccccc-C-HHH-------Hhhh---
Confidence 2478888888888774333344 34454444443333322 22321111000000 0 000 0000
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (588)
. + .+..+.+..... +..++......
T Consensus 200 --------------------------~-----------------------~-----~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 200 --------------------------D-----------------------A-----FILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred --------------------------h-----------------------H-----HHHhcCCCeeeHHHHHHHHHhHHH
Confidence 0 0 000000000001 11111111111
Q ss_pred HHHhcccceeeeeccccccccCCcccc-ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFK-IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
..+...+.+.... +. +...+ .++. ........++.+..+++..+.++ +.||+++| +.+.++.++.
T Consensus 226 ~~~~~~~~~~~~~-g~-~~~~~-~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~g~r-------~~l~~~~~~~ 291 (418)
T TIGR00889 226 ITNIFGNGFLHEF-GR-NPEFA-DSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRFGIK-------KVMLLSLVAW 291 (418)
T ss_pred HHHHhHHHHHHHh-cc-ccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHHH
Confidence 1111111111000 00 00000 0000 01122233334444444444333 47887665 5667777777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHH-
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF- 500 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~- 500 (588)
++++.+..... + .....+.+++..++.+++++...+....++.|.+|++.|++++|+.+
T Consensus 292 ~v~~~l~~~~~----------~----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 292 ALRFGFFAYGD----------P----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred HHHHHHHHHcC----------c----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 66655554320 0 01123345556778888888888888899999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007827 501 VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 566 (588)
Q Consensus 501 ~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~ 566 (588)
..+.+|..+++.+.|.+.+..+.... .+++..|.+.+++.++..++.+++.++.++
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 67889999999999999876421000 135678888888888888888888765533
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=193.63 Aligned_cols=398 Identities=15% Similarity=0.119 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 007827 63 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 142 (588)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (588)
+.+++++.+++++|+.+.|+++|| +|||+.+++..++..++.++..++... ....+++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~---------------------~~~e~li 120 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA---------------------PSFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH
Confidence 346888999999999999999999 699999999998888877777665432 4678899
Q ss_pred HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH-Hhc-cccchhhHHHHHHHHH
Q 007827 143 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV-YVQ-SDVSWAWGLGIPAFMM 220 (588)
Q Consensus 143 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~-~~~-~~~g~~~~~~~~~~~~ 220 (588)
++|++.|+..|......+-++.|..|++. ||..-.....+.++|..++..++. .+. +...|++.+....+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999987422 223344455567777777755543 333 4456999888887766
Q ss_pred HHHHHHHHhc--cceeecc-CCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcc
Q 007827 221 FLSCAMFFLG--SRLYAKV-KPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 297 (588)
Q Consensus 221 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (588)
++.+++..+. .|++.-. +.+.+++.+ +.|+-+ .+++... ..+.......+
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~-------sl~~y~--G~~~~~~-~~e~~~~e~~~----------------- 247 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARK-------ALKFYR--GKEDVEA-EIEEMLREIEE----------------- 247 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHH-------HHHHHh--CCCcchh-HHHHHHHHHHH-----------------
Confidence 6666554443 3443222 222222221 111111 1111100 00000000000
Q ss_pred cCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc--eeeeeccccccccCCcc--ccccch
Q 007827 298 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT--YVVFQALQSDRRVGNTH--FKIPAA 373 (588)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~--~~~~~~ 373 (588)
.+..+....++++..+++..++...+.. .....+|+.+ ...+|....-.+.|-+. -...+.
T Consensus 248 ------~~~~~~~~~sl~~~~~~~~lR~~~~i~~---------~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~ 312 (485)
T KOG0569|consen 248 ------EELEKKKQISLRQLLKNPTLRRPLLIGI---------VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANL 312 (485)
T ss_pred ------hccccccCCcHHHHhcCcchhHHHHHHH---------HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0000001111111111111112211111 1112233333 22222222222333000 001122
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
..+.++.+..+++.. +.||+||| ..+..+..++.+..+++.......+..
T Consensus 313 ~~g~v~~~~t~~~~~--------lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~--------------- 362 (485)
T KOG0569|consen 313 GIGIVNLLSTLVSPF--------LIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSF--------------- 362 (485)
T ss_pred HHHHHHHHHHHHHHH--------HHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 223333333333333 47887887 556666666666555554433221111
Q ss_pred ccchHHH--HHHHHHHHHHH-HHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 007827 454 SSLSGLW--LIPQLSLIGFS-EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 530 (588)
Q Consensus 454 ~~~~~~~--~i~~~~l~~~~-~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~ 530 (588)
+ ++.+ .+.+.++..++ .....|..+-+.+|.+|++.|+.++++..+.+++++.+..+..+.+.+..|
T Consensus 363 -~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------- 432 (485)
T KOG0569|consen 363 -G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------- 432 (485)
T ss_pred -h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 0 2222 22333333333 345578889999999999999999999999999999999999999987652
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhhhc
Q 007827 531 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAME 579 (588)
Q Consensus 531 ~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (588)
...|..+.+.++++.+..+...||+|+|..+|..++.+++
T Consensus 433 ---------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 433 ---------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 1578889999999999999999999999987766665544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=189.58 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHH-HHH-----HHHHHHhhhhhhhhhhccccchhHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLI-NIF-----SGTTNFATLLGAFLSDTYFGRYKTLGFAS 98 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~-~~~-----~~~~~~~~~~~G~lsDr~~Grr~~l~~~~ 98 (588)
....+.+..+++.+....+.... +.+.++++.++.+.+.+. +.. .++..+++++.|+++|| +||||.++.+.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~ 93 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHH
Confidence 34444556666666655555444 466788999887765433 222 22234678999999999 69999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 99 VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
+++.++.+++.++.+.... .......++++|+++|++.+...+....+++|.+|+++ +
T Consensus 94 ~~~~~~~~l~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r 151 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATI----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K 151 (434)
T ss_pred HHHHHHHHHHHhCCcHHHH----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence 9999998888876321000 00001256899999999999999988999999997422 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh--------ccccchhhHHHHHHH
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYV--------QSDVSWAWGLGIPAF 218 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~--------~~~~g~~~~~~~~~~ 218 (588)
+...++...+.++|..+++.+++.+ .+.+|||++|++...
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 3456676667777777777766654 246899999987543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=187.08 Aligned_cols=177 Identities=7% Similarity=-0.112 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..+++++.|+++|| +||||.++.+.+..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 4445556677777777888899999999999999999999999999999999999999999 699999988766655443
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.........+. .+......+++++++.+++.+...+....+..|.-+ ++. ..++..
T Consensus 83 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~----~~~g~~ 138 (396)
T TIGR00882 83 APFFIYVFGPL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR----NSN----FEYGKA 138 (396)
T ss_pred HHHHHHHhhhH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh----hcc----cccchh
Confidence 32221100000 000123345667888888888888877776655321 111 235666
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
....++|.+++|.+++.+.+ .+|+..|++.+++.++..++.+
T Consensus 139 ~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 139 RMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 67789999999999998765 6999999987776655544433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-19 Score=189.29 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=116.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
......+.++.+...+........+|. +++++|.|..+.+++.+.+.++..+++++.|+++|| +||||++..+.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence 334445555555555665555555555 489999999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++..... ..++..++++|+++|+|.|...+..++++.|..++ .++ ....
T Consensus 103 ~~~~l~~~~~~---------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~---~~~---~~~~ 155 (438)
T PRK10133 103 LGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE---SSG---HFRL 155 (438)
T ss_pred HHHHHHHHHHh---------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh---hhH---HHHH
Confidence 98877532211 03678899999999999999999999998886432 111 1235
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
+.......+|..+++.+++.+.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888876543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=188.29 Aligned_cols=354 Identities=13% Similarity=0.114 Sum_probs=209.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchh-HHHHHHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASFLGMLVLS 109 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~l~~~~~~~~i~~~~~~ 109 (588)
+..+..+..+..+++.|+++++|+|+.++|++.++..+...+..|+.|+++||. +|||| .++.+.+..+++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344455556678899999999999999999999999999999999999999972 47755 56667777777766665
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.....+ .......+++.+++.+++.+....+..++..|..++ +. + |+...++...+.
T Consensus 89 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~-~--R~~~~~~~~~~~ 145 (437)
T TIGR00792 89 TTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PR-E--RESLSTFRRFGA 145 (437)
T ss_pred hCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HH-H--HHHHHHHHHHHH
Confidence 542110 012356667778888888888877778888887653 11 1 235566666677
Q ss_pred HHHHHHHHHHHHHhc-------cccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCC-ChhhhHHHHHHHHHHhhccC
Q 007827 190 TFAMMISLTVIVYVQ-------SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEG-SPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 261 (588)
++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+...++.+++.+++ ++.....+
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------ 213 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQ------------ 213 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHH------------
Confidence 777777666654443 2468999888877766555544443333321110000 00000000
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh-HHHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP-IWASAIV 340 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 340 (588)
.+ +.....|.+...+. .++....
T Consensus 214 ---------------------------------------------------~~-----~~l~~~~~~~~~~~~~~~~~~~ 237 (437)
T TIGR00792 214 ---------------------------------------------------IF-----KALFKNDQLLILCLAYLFYNLA 237 (437)
T ss_pred ---------------------------------------------------HH-----HHHhCCHHHHHHHHHHHHHHHH
Confidence 00 00000111111111 1111111
Q ss_pred HHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 420 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l 420 (588)
.. .......++..+..... .....+.....++.+++.++..+ +.+|+++| +.+..+.++
T Consensus 238 ~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~~-------~~~~~~~~~ 296 (437)
T TIGR00792 238 FN-IKNGVQVYYFTYVLGDP---------ELFSYMGSIAIVAGLIGVLLFPR----LVKKFGRK-------ILFAGGILL 296 (437)
T ss_pred HH-HHcchhheeEeeecCCh---------HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHH
Confidence 11 11111112211111000 01112233334444555555433 47776654 456666666
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-------cchHH
Q 007827 421 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRS 493 (588)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-------~~~rg 493 (588)
.+++++...... .+.+..+...++.+++.+...+..++++.|..| ++.+|
T Consensus 297 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 297 MVLGYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 666655544321 133444556677788888888888888888765 66789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007827 494 IGGSLAFVGFAISNYLNGFLISMVHRFTK 522 (588)
Q Consensus 494 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~~ 522 (588)
.++|+.++...++..+++.+.+.+.+..|
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999987764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-19 Score=185.21 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
.+.+.+|.+. +++|+|..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++...+...
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3456677765 5799999999999999999999999999999999 699999999999888888877765
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.+.+++.|++.|++.+...+...+++.|.+++ +.++..+++.+....+|..++|.+++
T Consensus 77 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 77 --------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPK------EEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999988899999998863 22346688888899999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+..+|++.|++.++..++..++..
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 137 WLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999889999999887766655544433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=196.99 Aligned_cols=404 Identities=16% Similarity=0.130 Sum_probs=238.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHH
Q 007827 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 140 (588)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (588)
+.+++.+...++..++++++|+++|+ +|||++++++.+.+.+|.++++.+ .+..+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a------------------------~~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA------------------------PSWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh------------------------hhHHH
Confidence 44899999999999999999999999 699999999999999999999998 46889
Q ss_pred HHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc-cchhhHHHHHHHH
Q 007827 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAFM 219 (588)
Q Consensus 141 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~-~g~~~~~~~~~~~ 219 (588)
++++|++.|+|.|....+.+.+++|..|+ +.|+...+..+...++|..++..++....+. ++||..+++..+.
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 218 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP 218 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence 99999999999999999999999998863 3334667777778888888885554444332 5899888887766
Q ss_pred HHHHHHHHHhc--cceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcc
Q 007827 220 MFLSCAMFFLG--SRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 297 (588)
Q Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (588)
.++..+..++. .|++..+..+.++.+...+ .. +... +.+...+ +..+. .
T Consensus 219 ~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~---~l---~g~~-~~~~~~~-------------------~~~~~---~ 269 (513)
T KOG0254|consen 219 AVILALGMLFLPESPRWLIEKGRLEEAKRSLK---RL---RGLS-PEDVEVE-------------------LELLK---I 269 (513)
T ss_pred HHHHHHHHHhCCCChHHHHHcCChHHHHHHHH---HH---hCCC-CcchHHH-------------------HHHHH---H
Confidence 65555553332 2332222111111111111 11 1100 0000000 00000 0
Q ss_pred cCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc--eeeeeccccccccCCccc-cccchh
Q 007827 298 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT--YVVFQALQSDRRVGNTHF-KIPAAS 374 (588)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~ 374 (588)
....+ .+.+ .....|+.+.. + ..+|+.+.... . ..++|..+ ...+|....-...|...- ......
T Consensus 270 ~~~~~-~~~~-~~~~~~~~l~~-~-~~~~~~~i~~~-----l---~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~ 337 (513)
T KOG0254|consen 270 KLLVE-AEVA-EGKASWGELFS-P-KVRKRLIIGLL-----L---QLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASII 337 (513)
T ss_pred HHHHh-hhcc-cccccHHHhcC-c-chHHHHHHHHH-----H---HHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHH
Confidence 00000 0000 00001221111 0 11222211111 1 11122222 344444333333330000 111222
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
.+.++.++.++.. .+.||.||| ..+..|.+.+.+++++++.......+... ...
T Consensus 338 ~~~v~~~~t~~~~--------~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~-----------~~~ 391 (513)
T KOG0254|consen 338 LGVVNFLGTLVAT--------YLVDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPN-----------SSK 391 (513)
T ss_pred HHHHHHHHHHHHH--------HHHHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCC-----------ccc
Confidence 2333333333332 347777777 67778888888888777765322111000 011
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
...+..+...++..........+..+.+..|.+|.+.|+++.++....+++.+.+-....+......
T Consensus 392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~------------- 458 (513)
T KOG0254|consen 392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL------------- 458 (513)
T ss_pred chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 2333444444555555556667777889999999999999999999999988888877777665432
Q ss_pred ccchhHHHHHHHHHHHHHHHH-HHHhhhccccccCCCCCCchhhh
Q 007827 535 NKGRLDYFYYLVAALGLLNFG-FFLLCAKWYKYKGSGDGAPEVAM 578 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 578 (588)
+....|..+++++.+... +++++.+|+|+++.|+.++...+
T Consensus 459 ---~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 459 ---GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred ---cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 113466777777777777 89999999999999876554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=188.90 Aligned_cols=380 Identities=13% Similarity=0.058 Sum_probs=238.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
...+.......+++.+....-++-++. ++.-|+...+++.....+-..+..+++|.++|| +.|||+++.+-++.++..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHH
Confidence 334445667777777666666665655 456789999999999999999999999999999 699999999988776655
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
..+.+..... ..+++.+++..++.|++.+...|+..+++.+++|+ +....+.++.
T Consensus 90 ~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~------~~L~~A~al~ 144 (524)
T PF05977_consen 90 LLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK------EDLPAANALN 144 (524)
T ss_pred HHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------hhHHHHHHHH
Confidence 5444432211 13577888889999999999999999999999974 2234568888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCC
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEE 265 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (588)
....|++..+||.++|.+...+|-.+.|.+.++..++.+..+...+++..+ ++.+.+...+.+..-+|
T Consensus 145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~r--------- 212 (524)
T PF05977_consen 145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLR--------- 212 (524)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHH---------
Confidence 889999999999999999988899999998887766655544433332211 11111111111111000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 345 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (588)
.+.+.+.+...+ ....++....
T Consensus 213 -------------------------------------------------------yv~~~~~l~~~l---~~~~~~~l~~ 234 (524)
T PF05977_consen 213 -------------------------------------------------------YVRSSPPLRSVL---LRSFLFNLFA 234 (524)
T ss_pred -------------------------------------------------------HHhcchHHHHHH---HHHHHHHHhh
Confidence 000001111111 0011111111
Q ss_pred hcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTM 425 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~ 425 (588)
......+ +.......+ .-....+.+.....++.++++.+.. ++.+| .+..+.+..+.++.++++
T Consensus 235 ~a~~aLl---Pl~a~~~l~--~~a~~yGll~a~~gvGai~Gal~~~--------~l~~~---~~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 235 SAVWALL---PLFARDVLG--GGASGYGLLLAAFGVGAILGALLLP--------RLRRR---LSSRRLVLLASLLFALAL 298 (524)
T ss_pred hHHHHhh---hHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHH--------Hhhcc---cCcchhhHHHHHHHHHHH
Confidence 0000111 111111111 0001112233334444445544422 22222 223355666666666666
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 007827 426 IISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI 505 (588)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~i 505 (588)
+.++.. .+.+..++.+++.|++.....+...+.+++.+|+++||+++|++.+....
T Consensus 299 ~~lal~------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g 354 (524)
T PF05977_consen 299 LLLALS------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG 354 (524)
T ss_pred HHHhcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH
Confidence 666653 35566667778888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 007827 506 SNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL 558 (588)
Q Consensus 506 g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~ 558 (588)
+..+|..+.|.+.+.. +....+.+.++..+++.++.+
T Consensus 355 ~~~lGsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 355 GMPLGSLLWGFLADHF----------------GVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 344555555554444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=182.59 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
+...+....++......+|.+ .+++|.|..+.+++.+.+.++..+++++.|+++|| +|||+.++.+.++..++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556554 56899999999999999999999999999999999 6999999999988888877776
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.. .+.+.++++|+++|++.+...+...+++.|.+++ +.++...+..+...
T Consensus 87 ~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~ 136 (392)
T PRK10473 87 LA------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD------RRRAKVLSLLNGIT 136 (392)
T ss_pred Hh------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHH
Confidence 65 2456788899999999999888889999998863 22346678888888
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++|..++|.+++.+.+..||++.|++.++..++..++.
T Consensus 137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999988776655554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=184.17 Aligned_cols=179 Identities=13% Similarity=0.008 Sum_probs=123.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
|.++...+ .+...+..+...+.+...+.+ ++|+|.+|.+++.+++.+.+.++.++.|++.|| +|.|+++.++.++..
T Consensus 34 r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 44443333 343344444444444455544 899999999999999999999999999999999 699999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+.++.+.++...+ ..++..+++.|++.|++ +...+.....++++||+ ++ ++.+.
T Consensus 112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~----~~--rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK----AK--QGSAL 165 (462)
T ss_pred HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH----hH--hHHHH
Confidence 8888777652100 13578899999999998 66778888999999963 22 24567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-----c-------------ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQ-----S-------------DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
++.....++|..+++.+.+.+. . ..+|+.+.++..+..++..++.++.
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666777766655554322 2 2346666666666555555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-18 Score=185.00 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=131.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-----cchhH-HHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-----GRYKT-LGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-----Grr~~-l~~ 96 (588)
+|+...++.+.+......+.....+|.+++ +.|.|.++.+... ...... ++.++.|+++|| + ||||. ++.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 445666777777778887888888898976 4599999998863 232333 689999999999 8 99986 556
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+.+..+++...+++... ..+++.+.+.+++.+++.+...+...++..|.+|++ +
T Consensus 87 ~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~----~- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE----E- 140 (491)
T ss_pred HHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----h-
Confidence 66666666666655421 145777888899999999999999999999998632 1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHHHH
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+.++...+..+|.++++.+++++.+ .+|||..|++.+++.++..+..+
T Consensus 141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 2456777788889999999999999888 57999999998776655544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=191.12 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=153.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..++.+..+.+.+.++...-|.+...+ .=.++.+|+++...|++.+++.+.+.++.|++|+|+||| .||+++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 334455566667777777777666544 345678999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.++.+...++ .+++++.++|.+.|+|.+.+.|.++++++|.|++++ |+.
T Consensus 108 W~~Av~~~~fs------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~ 157 (493)
T KOG1330|consen 108 WTLAVFASGFS------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSR 157 (493)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhH
Confidence 99998888887 478999999999999999999999999999998633 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
.++++|++.++|..+|.+++.++....+ |||+|+..+++.++..++.++..++
T Consensus 158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 6999999999999999999999988766 9999999998888777766655444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-18 Score=178.98 Aligned_cols=155 Identities=13% Similarity=-0.077 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch----hHHHHHHHHHHHHHHHH
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY----KTLGFASVASFLGMLVL 108 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr----~~l~~~~~~~~i~~~~~ 108 (588)
.++..+++..+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|.++|| +||| +.+.+...+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH---HHHH
Confidence 44445556677788999985 689999999999999999999999999999999 6984 3322221111 1111
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... .+.+.+++.|++.|++.+...|...++..+.. +++. ..++..+..
T Consensus 88 ~~~~-----------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~----~~~~----~a~~~~~~~ 136 (382)
T PRK11128 88 WFGA-----------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ----KQIG----LDYGKVRLW 136 (382)
T ss_pred HHhc-----------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH----hhcc----CCcchHHHH
Confidence 1111 35777888999999999998888777776642 1112 236666777
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.++|.+++|.+++++.+++|||..|++.++..++.
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 88999999999999999999999998766544433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=205.23 Aligned_cols=154 Identities=8% Similarity=0.069 Sum_probs=116.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchh--hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSIT--ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
....+++..++..+...+....+..++...++.+... .+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence 3444445555555555555555666666666665443 6888999999999999999999999 699999998887766
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.++..+.... .+++.++++|+++|++.+...++..++++|.+++++ ++.++
T Consensus 89 ~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 141 (1146)
T PRK08633 89 GLTLLIVLAYYL---------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN 141 (1146)
T ss_pred HHHHHHHHHHHH---------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence 555544433210 357889999999999999999999999999997422 23568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+++..+.++|.++|+.+++++...
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999988765
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=197.29 Aligned_cols=365 Identities=34% Similarity=0.545 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC
Q 007827 92 KTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT 171 (588)
Q Consensus 92 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 171 (588)
|+++++.+++++|.+++.++...+.. ++..+...++++..+.++|.|+..|+..++++||+++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 78899999999999998777542211 122456789999999999999999999999999998653
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeecc-CCCCChhhh-HHH
Q 007827 172 ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV-KPEGSPLAS-TVQ 249 (588)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 249 (588)
++.+.++|+++|.+.|+|+.+++.+.+++.+++||.+.|.++.+.++++++++...++.+.++ ++.+++..+ ...
T Consensus 67 ---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~ 143 (372)
T PF00854_consen 67 ---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL 143 (372)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred ---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence 334458999999999999999999999999999999999999999999999988888887766 555555555 333
Q ss_pred HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc-chhhHHHHHHHH
Q 007827 250 VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL-SSMQKVEEVKVL 328 (588)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 328 (588)
.+....+++....+....+..... .. .+...............+..+. ...|.. +..++++..+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~ 210 (372)
T PF00854_consen 144 VLVAAFKKRKLAVPKGSSWLDWAL--FQ--YSERSIFGIIVFIRAAVIFFPE---------IFFWALFCQVQRVEELKAL 210 (372)
T ss_dssp HHHHHHHHHCCCH-HHHHHHHHHH--HH--HCCCCCCCCCCHHHHHHHHCCC---------HHHHTTTSSTTTHHHCCHH
T ss_pred HHHHHHHHhhcccccchHHHHHhh--hh--hhhhhhhhhhhhccchhhhhhh---------hhhcccCCccceeeeeeee
Confidence 333344444333321111000000 00 0000000000111111111110 111111 123445566677
Q ss_pred hhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCC
Q 007827 329 IRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGI 408 (588)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~ 408 (588)
.+.++.+...+.++..+.+...+...+....+...+ +.+.+++++++++|++.++++.|+.|++.+|+.+ ++...
T Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~----~~~~~ 285 (372)
T PF00854_consen 211 IRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR----RGIQP 285 (372)
T ss_dssp HCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTT----T----
T ss_pred eeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhh----hcccc
Confidence 777777777777777777766666666666665565 2388999999999999999999999999888877 22337
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC
Q 007827 409 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 488 (588)
Q Consensus 409 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P 488 (588)
+...++.+|+++..+++++....+..+.......+ ..+.+|.+..+++..++|.+..+...+..+|.+|
T Consensus 286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~ 354 (372)
T PF00854_consen 286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-----------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAP 354 (372)
T ss_dssp --HHHHHHH-HHHHHHHHTTTHHHH---HH----T-----------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-----------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Confidence 88899999999999998888776654443333333 2344677799999999999999998886666666
Q ss_pred cchHHHHHHHHHHHH
Q 007827 489 ENMRSIGGSLAFVGF 503 (588)
Q Consensus 489 ~~~rg~~~~~~~~~~ 503 (588)
++..+..+|++....
T Consensus 355 ~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 355 SRAPSSMMGIWFALS 369 (372)
T ss_dssp TT-SSSSTHHHHHHH
T ss_pred HhhhHHHHHHHHHHh
Confidence 666666666655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=182.32 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+...+..+......+...+.+|.++++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+.++++.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 334445555556666677777778899999999999999999999999999999999999 6999999999999998888
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++.++. .+++.++++|+++|++.+.. +...++++|.+++++ ++...+++.
T Consensus 83 ~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~ 132 (366)
T TIGR00886 83 WAGLAV-----------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAA 132 (366)
T ss_pred HHHHHh-----------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHH
Confidence 877762 15778889999999996654 557788999886422 234577777
Q ss_pred HHHHHHHHHHHHHHHHhcc----------ccchhhHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQS----------DVSWAWGLGI 215 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~----------~~g~~~~~~~ 215 (588)
...++|..+++.+++.+.. ..+||+.|++
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 6677777777777665543 3489999843
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=184.15 Aligned_cols=417 Identities=15% Similarity=0.063 Sum_probs=226.5
Q ss_pred CCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc-
Q 007827 57 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP- 135 (588)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (588)
.++...+.+..+..++..+++++.|+++|| +|||+++...+++..++++++.+.... +++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~------------------~~~~ 141 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGT------------------TSPL 141 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCC------------------CCCc
Confidence 567778899999999999999999999999 699999999999999988866654221 111
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------- 206 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------- 206 (588)
.-.++++..|+++|+|.|+-+|+..+..+|.....++ ...++..++....+.-.|++++.++..-....
T Consensus 142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R--Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ 219 (538)
T KOG0252|consen 142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR--GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPH 219 (538)
T ss_pred chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc--cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchH
Confidence 3467789999999999999999999999987654322 22334555666666666666665554433211
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHH-HHHHHHHHhhccCCCCCCccccccCCCcccccCCC
Q 007827 207 --VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV-QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL 283 (588)
Q Consensus 207 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (588)
.=||..|.+.++..++.+. .-+..|+. +....+. +-...+.. ..+++.+... + +++ ..+
T Consensus 220 ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et-------~~Y~al~~~~~~~a~~--d~~k~~~~~~---~-~~~--~~~-- 281 (538)
T KOG0252|consen 220 LDGVWRIIFGLGAVPALLVLY-FRLKMPET-------ARYTALVSKKLKQAAG--DMKKVLSVDI---E-AES--TAE-- 281 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhcCCcc-------hhHHHHhhcCHhhhhh--cccccccccc---c-hhh--ccc--
Confidence 1288877766553322211 11111111 0111000 00000110 0111100000 0 000 000
Q ss_pred CCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeecccccccc
Q 007827 284 PHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRV 363 (588)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (588)
+....+.+..+++.+.. ..+ ....++......++.-..++..-.++....+ .+
T Consensus 282 ---------------------~~~~~~~~~~~~F~~~f-~~~----hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~i 334 (538)
T KOG0252|consen 282 ---------------------SDVPPPSNSFGLFSRLF-LRW----HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AI 334 (538)
T ss_pred ---------------------cCCCCcccccchHHHHH-HHH----HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hh
Confidence 00011112222222111 111 1111112222222222222222222222211 01
Q ss_pred CC-ccccccch--hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 364 GN-THFKIPAA--SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 440 (588)
Q Consensus 364 g~-~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 440 (588)
|- |.-..... .....|.+...+.....-++...+.|++||| ..-..|++++++.++.++...
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y-------- 399 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPY-------- 399 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCc--------
Confidence 10 00000000 0111222222222222223344568888877 677788888888877776431
Q ss_pred cCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 441 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
|+ .. ......+.-.+...+++..-..++..+.+|.+|.+.||+.-|+...+.-+|++++......+.+.
T Consensus 400 ------~~----~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~ 468 (538)
T KOG0252|consen 400 ------NQ----LE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH 468 (538)
T ss_pred ------cc----cc-ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence 11 01 11111222223333455566666788899999999999999999999999999999999887652
Q ss_pred ccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhh
Q 007827 521 TKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVA 577 (588)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (588)
. +. ...+..+.+++++++++++.++++++- |+|+|++|+.+++.+
T Consensus 469 ~-------yp----~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~~e~~ 513 (538)
T KOG0252|consen 469 N-------YP----PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEISNEEE 513 (538)
T ss_pred c-------CC----ccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhcChhh
Confidence 1 11 112567899999999999977766665 999999987755533
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-18 Score=202.50 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH--HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 60 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA--SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
...++..+++.+.+.++++++|+++|| +|||+++.....+ .+....+..+.. .+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~-----------------------~s 107 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL-----------------------NS 107 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hh
Confidence 345777888999999999999999999 6999976432221 111111222211 35
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 217 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~ 217 (588)
++.++++|+++|++.+.+.|+..+++.|++++++ ++.++++...+.++|.++||.+++++....+|++.|...+
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7889999999999999999999999999997522 2356889999999999999999999999999999985444
Q ss_pred HHHHHHHH
Q 007827 218 FMMFLSCA 225 (588)
Q Consensus 218 ~~~~~~~~ 225 (588)
+..+++++
T Consensus 182 ~~~~~~~~ 189 (1140)
T PRK06814 182 GIAVLGWL 189 (1140)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-18 Score=173.74 Aligned_cols=392 Identities=11% Similarity=0.031 Sum_probs=251.0
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASV 99 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~ 99 (588)
+.+.|.++... ..+..++..+...+.+.+++++++|+|+.|.+++..+..+.+.+..++.|++.|| ||.|+....+.+
T Consensus 10 ~~~~~~L~~S~-~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLST-LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 34455555433 3344455556667778888899999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+..+-.+...++... .+++.+++.+.+.|++.+.+.. ..+.++..||++ ++ +
T Consensus 88 l~~IP~~~~~~a~~~---------------------~~~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~----~q--G 139 (417)
T COG2223 88 LLLIPCLGLAFAVTY---------------------PSTWQLLVIGLLLGLAGASFAV-GMPNASFFFPKE----KQ--G 139 (417)
T ss_pred HHHHHHHHHHHHccC---------------------CchHHHHHHHHHHhcccceehc-ccccccccCChh----hh--h
Confidence 988888888887542 2347888999999998877654 778889999742 22 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIK 256 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (588)
.+.+++. ..|+|..+...+++.+....+ |+....+..+..++..++.++..++.+..++..++... ..+
T Consensus 140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~----- 211 (417)
T COG2223 140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQL----- 211 (417)
T ss_pred HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHH-----
Confidence 6788877 899999999999999988888 99888888887777777766655553332221111100 000
Q ss_pred hhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH
Q 007827 257 KRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA 336 (588)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (588)
+.+...+....+..++.
T Consensus 212 ---------------------------------------------------------------~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 212 ---------------------------------------------------------------KAVFSNKDTWLLSLLYF 228 (417)
T ss_pred ---------------------------------------------------------------HHHhcCcchHHHHHHHH
Confidence 00111111111211222
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~ 416 (588)
..+.-+..+. ...+.+...+.| -.....+.+....++.-.+.-|+.+++ .||+|.+ +....
T Consensus 229 ~tFG~Fvgfs------~~l~~~~~~~fg--~~~~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~-------rv~~~ 289 (417)
T COG2223 229 ATFGGFVGFS------AYLPMYLVTQFG--LSPVTAGLIAFLFPLIGALARPLGGWL----SDRIGGR-------RVTLA 289 (417)
T ss_pred HHHHHHHHHH------HHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHHHhccchh----hhhccch-------hHHHH
Confidence 2221122111 111112222232 000112233344444444555554444 7887765 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHH
Q 007827 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGG 496 (588)
Q Consensus 417 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~ 496 (588)
.+..++++....+...+ ..+ ...+....+..++..++..+...-..+.++...+|+ +-|.+.
T Consensus 290 ~f~~~~~~~~~l~~~~~-------~~~----------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~ 351 (417)
T COG2223 290 VFVGMALAAALLSLFLT-------GFG----------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVT 351 (417)
T ss_pred HHHHHHHHHHHHHcccc-------ccc----------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHH
Confidence 56666666655554311 000 123444445555555566666666667677666666 577888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 497 SLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 497 ~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
|+.....++|+..-|...+...+.+ +.+...|+++..+.+++.++++....+.
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888899888888888888765 2466789999999999988888776544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=185.94 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=134.2
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
.+++++..+-+++.+.+..|+.+++.++|+++|| +|-|+++..+.++.++.+++..++..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3689999999999999999999999999999999 69999999999999999999888764
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc-cchhh
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAW 211 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~-~g~~~ 211 (588)
.+.+.+++.|+++|++.|...|+...+.+.+.|++ + ++...++.+.+..+|.+++..++|++.+. +||++
T Consensus 126 ---~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~---E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 126 ---IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN---E---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred ---hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH---H---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 34557899999999999999999999999999842 2 24568888888999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHhccceeec
Q 007827 212 GLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
+|++.++..++..+++++...+.+.
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999888877776666655554333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=178.62 Aligned_cols=164 Identities=12% Similarity=0.133 Sum_probs=110.7
Q ss_pred HHHhhhhhhhHHHHHHHhcC--CCchhhhHHHHH-----HHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 37 KLGTTGTSSNLLVYLTTIFN--MKSITATTLINI-----FSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g--~s~~~~~~~~~~-----~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+..+.+. .+..++.+++. .++++.+.+.+. ..++..+++++.|+++|| +||||++..+.++..++.+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHh
Confidence 34443433 34445555543 445555554433 223334688999999999 6999999999999988888877
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
++.+.+.. .......++++|+++|++.+...+...+++.|.+++++ ++...+..+.+.
T Consensus 84 ~~~~~~~~----------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 141 (394)
T TIGR00883 84 LLPSYATI----------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGA 141 (394)
T ss_pred hCCChhhh----------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHH
Confidence 76321100 00112457899999999999999999999999886421 235577777788
Q ss_pred HHHHHHHHHHHHHhc--------cccchhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~--------~~~g~~~~~~~~~~~~~~~~ 224 (588)
.+|..+++.++..+. +.++||+.|.+..+..+++.
T Consensus 142 ~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 142 PVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 888888888766543 35789999987766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=174.57 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=123.3
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
++...+.+.+++++|+|..+.|++.+.+.+++.++.++.|++.|| +|||+++..+.++++++..++..+..
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 444444456688999999999999999999999999999999999 69999999999999988877544321
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
..+++.+++.|++.|+|.|...+..++++.+..++++ ++...+..+...++|..++|.+++
T Consensus 91 -------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 91 -------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred -------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999888775422 223477778888999999999988
Q ss_pred Hhccc--------------------------cchhhHHHHHHHHHHHHH
Q 007827 202 YVQSD--------------------------VSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 202 ~~~~~--------------------------~g~~~~~~~~~~~~~~~~ 224 (588)
.+... .+||++|.+.++..++..
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76422 369999987766554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=169.44 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-----cchh-HHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-----GRYK-TLGFASVASFL 103 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-----Grr~-~l~~~~~~~~i 103 (588)
+.+.+.+.+.+.....-+|.|+++ .|+|.++.|++...... .+..++.|+++|| + |||| .++++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 445566666666677889999975 59999999999776665 5999999999999 7 8876 57777777766
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+...+.+... ..+.+.+++..++.++..+...+...+++.|.+|++ + ++.+.+
T Consensus 81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~----~--r~~~~~ 133 (402)
T PRK11902 81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE----E--RGAGAA 133 (402)
T ss_pred HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----h--hhHHHH
Confidence 6666555421 134666677777778888888899999999998642 1 234577
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~ 225 (588)
+...+.++|..+++.+++++.+. +|||..|++.++..++..+
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 77778889999999998888875 5999999987776555444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=172.85 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=115.3
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+.+.+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.+++.+.+ ..
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 344454 4567999999999999999999999999999999999 699999999888877766555 32
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.+.+.+++.|++.|++.+...+....++.|.+++ .++...+.++...++|..+++.+++.
T Consensus 85 -------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~ 144 (355)
T TIGR00896 85 -------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVP 144 (355)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466788999999999998887777787777641 12456888888889999999999888
Q ss_pred hcccc--chhhHHHHHHHHHH
Q 007827 203 VQSDV--SWAWGLGIPAFMMF 221 (588)
Q Consensus 203 ~~~~~--g~~~~~~~~~~~~~ 221 (588)
+.+.. +||+.|.+.++..+
T Consensus 145 l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 145 LAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 87654 38988876555433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=173.97 Aligned_cols=171 Identities=8% Similarity=0.016 Sum_probs=112.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhh----ccccch-hHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSD----TYFGRY-KTLGFASVASFLGML 106 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr-~~l~~~~~~~~i~~~ 106 (588)
..+..++.+..+..+++.|+++.+|+++..+|.+..+.-+.-.+..|+.|+++| | +||| +.++++.+..+++..
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHH
Confidence 445556666677788999999999999999999999999999999999999999 6 5995 455566666666655
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++...... +.......+++...+..++......+..++.+|+.++. .+ |+...++-.
T Consensus 93 llf~~p~~------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~--~e---R~~l~~~~~ 149 (473)
T PRK10429 93 LLFSAHLF------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK--RE---REQLVPYPR 149 (473)
T ss_pred HHHcCCCC------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH--HH---HHHHHHHHH
Confidence 55432110 00123455566666778888888888888888877542 22 234555555
Q ss_pred HHHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
...++|+.+.+.+...+.. ..+|+....+.+++.++..++
T Consensus 150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 6667776665554443221 124555555554444443333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=166.79 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=111.0
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc----ccchhHH-HHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY----FGRYKTL-GFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.+|.+ .+++|+|.++.++.... .+...+ .++.|+++||+ +||||.+ +.+.++.++....+.+...
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------- 79 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------- 79 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-------
Confidence 44545 56789999999998655 344444 99999999993 2899975 4555556555555544321
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
..+.+.+....++.+++.+...+...+++.|.+|++ .|+.+.++...+.++|.++++.++
T Consensus 80 --------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 80 --------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHH
Confidence 134556666777778888888888899999999642 123567788888999999999999
Q ss_pred HHhccccc--------hhhHHHHHHHHHHHHHHHHH
Q 007827 201 VYVQSDVS--------WAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 201 ~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+.+..+ ||..|++.++..++.+++.+
T Consensus 140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 98888877 99999988876666554444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-16 Score=167.64 Aligned_cols=441 Identities=10% Similarity=0.048 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc---cccchhHHHHH-HHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDT---YFGRYKTLGFA-SVASFLG 104 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~l~~~-~~~~~i~ 104 (588)
+-...+.-++++....++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| ++||||.++.+ .+...++
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33444455666666677788776 5799999999999999999999999999999993 26999998875 4445555
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
.+++..+.++.... -++- +...........+++..+..++.....++..++++|+.|++++++ ..++++
T Consensus 88 l~ll~~~~~~~~~~---~~~~----~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~----~~a~~~ 156 (477)
T TIGR01301 88 VILIGFAADIGHLF---GDNL----DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRT----RIANAY 156 (477)
T ss_pred HHHHHhCchhhhhc---cccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHH----HHHHHH
Confidence 55555543211000 0000 000001112344555556667888788888999999998633222 246888
Q ss_pred HHHHHHHHHHHHHHHHHHh--ccc-------------cchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHH
Q 007827 185 YYFTFTFAMMISLTVIVYV--QSD-------------VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQ 249 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~--~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
.....++|+.+|+.++++. .+. .+.+..|++.++..+++.++..+..+|.+..++++ ..++
T Consensus 157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~-~~~~--- 232 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD-FINS--- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc-chhh---
Confidence 8889999999999998864 221 15788999888877777666655544432111100 0000
Q ss_pred HHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHh
Q 007827 250 VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI 329 (588)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (588)
. .+ +.++. ...+.+. ..|+.+.+- =|.+.
T Consensus 233 ---------~-----------~~--~~~~~----~~~~~~~---------------------~i~~~~~~m----P~~m~ 261 (477)
T TIGR01301 233 ---------E-----------AA--PPSKH----GEEAFFG---------------------ELFGAFKYL----PRPVW 261 (477)
T ss_pred ---------h-----------cc--ccccc----chhhhHH---------------------HHHHHHHHC----CHHHH
Confidence 0 00 00000 0000000 001000000 01122
Q ss_pred hhhhHHHHHHHHHHHHhcccc-eeeeeccccccccCCcccccc---chhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCC
Q 007827 330 RVIPIWASAIVYYVALVQQQT-YVVFQALQSDRRVGNTHFKIP---AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 405 (588)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~ 405 (588)
+.+.+.++...-|..+..+.+ ++-...-..+.... ..++.. ..+....+.+...+...+ +-++.+|.++|+
T Consensus 262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~-~~y~~gvr~G~~~l~~~s~~~~i~s~~----l~~l~~~~g~~k 336 (477)
T TIGR01301 262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG-AKYDDGVRAGAFGLMLNSVVLGITSIG----MEKLCRGWGAGK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccch
Confidence 223333333333333333333 11100000000000 001111 122233344443333333 333467766431
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch-HHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 007827 406 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS-GLWLIPQLSLIGFSEAFTIIAEVEFYY 484 (588)
Q Consensus 406 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~ 484 (588)
....++.++.++++....+.....++....+++. +.. +.+.. .+..+..+.+.|+........-+++++
T Consensus 337 ------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~--~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 337 ------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDG--ESL--PPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccc--ccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 3446777777777777665432111100111100 000 01111 355666788889988888888899999
Q ss_pred ccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 485 KQFPE--NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 485 ~~~P~--~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+..|+ +..|..+|+.|+.-.+...+.....|.+.+..++ +..+++.+.++..+++.+..+...|
T Consensus 407 ~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 407 IRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred HHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 99995 4559999999999999999999888876555431 2345777888888888888888777
Q ss_pred ccc
Q 007827 563 WYK 565 (588)
Q Consensus 563 ~~~ 565 (588)
+.+
T Consensus 473 ~~~ 475 (477)
T TIGR01301 473 RPR 475 (477)
T ss_pred CCC
Confidence 654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=162.49 Aligned_cols=382 Identities=11% Similarity=0.067 Sum_probs=213.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
...++..+.+....++++.|++ +.|+|..|.|.+.++..+...+.+++.|+++||+..+||.+.+..++.++..+....
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555567788999997 578999999999999999999999999999999523566666655555554434333
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
. .+++.++...++..+......|...++..+...+ ++.+ |+-....++
T Consensus 88 ~------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~------YG~iRlwGS 135 (400)
T PF03825_consen 88 S------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKD------YGRIRLWGS 135 (400)
T ss_pred h------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCC------CCcchhhhh
Confidence 2 2455566667777888888888888887776642 2222 666666777
Q ss_pred HHHHHHHHH-HHHhccccc---hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhh-hHHHHHHHHHHhhccCCCCC
Q 007827 191 FAMMISLTV-IVYVQSDVS---WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLA-STVQVFVAAIKKRHLKLPEE 265 (588)
Q Consensus 191 ~g~~i~~~i-~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (588)
+|.+++... ++.+....+ ..+.+++.+...++.... .+..|+.+.++..+++.+ ...
T Consensus 136 iGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~~~~----------------- 197 (400)
T PF03825_consen 136 IGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKKLLG----------------- 197 (400)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCcccccc-----------------
Confidence 777776443 223332222 234445544433222221 222232221000000000 000
Q ss_pred CccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007827 266 PWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 345 (588)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (588)
.+.|+++ ++++.....+..++.+...- .+
T Consensus 198 ---------------------------------------------~~~~~ll-----k~~~~~~Fll~~~l~~~~~~-~~ 226 (400)
T PF03825_consen 198 ---------------------------------------------LDALKLL-----KNPRFLVFLLAAFLIGISHA-AY 226 (400)
T ss_pred ---------------------------------------------hHHHHHh-----cCccHHHHHHHHHHHHHHHH-HH
Confidence 0000000 01111111111111222111 11
Q ss_pred hcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHH
Q 007827 346 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTM 425 (588)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~ 425 (588)
+.+...+....+.. .....+....++. +.|.......+|+-+| .+..+.+.++.+..++=.
T Consensus 227 ~~f~~~yl~~~gg~-----------~~~~~g~~~~l~~-----~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 227 YTFFSIYLQELGGY-----------SGSTIGILWALGV-----VAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHcccc-----------hhhHHHHHHHHHH-----HHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 11112111111100 0111111111111 1222222234444444 445577878887777777
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCccccchHH---HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHH
Q 007827 426 IISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL---WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 502 (588)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~ 502 (588)
.+.+... +..+. ..++..++.|+..++.......|+.+.+|++.|++++++++..
T Consensus 288 ~l~a~~~----------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~ 345 (400)
T PF03825_consen 288 LLYAYFS----------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL 345 (400)
T ss_pred HHHHHhc----------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 6666541 11111 2233346789999999999999999999999999999998664
Q ss_pred -HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 503 -FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 503 -~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
.++|..+|+.+.|.+.+..+..+.. .+..++.+.+++.++..+.++++.|+.+
T Consensus 346 ~~Glg~~iG~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 7899999999999999876433221 2335667777777777777777776543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-16 Score=168.52 Aligned_cols=148 Identities=9% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc----cchhHH-HHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF----GRYKTL-GFASVASFLGML 106 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~----Grr~~l-~~~~~~~~i~~~ 106 (588)
..+..+..+..+..+++.|+++.+|+++.++|.+.....+...+..|+.|+++|| . ||||.+ +++.+...+...
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDS-VNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeec-CCCCCcCchHHHHHHHHHHHHHHH
Confidence 3445556666667788889999999999999999999999999999999999999 5 677654 455554444333
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++..... . ..........+....+.+++.+...++..++..++..+.+ ++ ....++-.
T Consensus 95 ~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~r---~~~~~~r~ 152 (448)
T PRK09848 95 LVFWVPT--D---------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--SR---ARLGAARG 152 (448)
T ss_pred HHHhCcC--C---------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--HH---HHHHHHHH
Confidence 3322110 0 0001233444555667788888888877787777665422 22 12222222
Q ss_pred H-----HHHHHHHHHHHHHHH
Q 007827 187 F-----TFTFAMMISLTVIVY 202 (588)
Q Consensus 187 ~-----~~~~g~~i~~~i~~~ 202 (588)
. ..+++..++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 2 234556666666654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=163.32 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=113.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccch-hHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRY-KTLGFASVASFLGMLV 107 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr-~~l~~~~~~~~i~~~~ 107 (588)
..+..+..+..+..+++.|+++.+|+|+.++|.+..+.-+...+..|+.|+++||. +||| +.++.+.+...+...+
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 33444555566678899999999999999999999999999999999999999992 3775 4455666666665544
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+...+. . ........+++...+.+++..+...+..++.+|+.++. .+ |++..++...
T Consensus 97 ~f~~p~---~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--~e---R~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTPD---F---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP--RE---RHSLQSWRFA 153 (444)
T ss_pred HHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--HH---HHHHHHHHHH
Confidence 433311 0 00134555666666777777777777788888877542 22 2345566666
Q ss_pred HHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHH
Q 007827 188 TFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~ 226 (588)
+.++|..+++.+...+.. ..+|+..+.+.+++.++..++
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 777777777654433222 246777666665554444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=153.19 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=119.2
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 41 TGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
...+..+.+.+++.++++..+++++...+..++.++.++.|++.+| +|+|+.++.++.++++|..+..=++.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~------- 100 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS------- 100 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 4445566677789999999999999999999999999999999999 69999999999999999887764432
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
..++..++.+.++.+.|.+...+..++++..+.++++..+| .+..+..+.+|+.++|.++
T Consensus 101 --------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r------lnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 101 --------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR------LNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred --------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH------HHHHHHhhhhHHHHHHHHH
Confidence 25678899999999999999999999999999986555555 7888888999999999999
Q ss_pred HHhcc
Q 007827 201 VYVQS 205 (588)
Q Consensus 201 ~~~~~ 205 (588)
+++..
T Consensus 161 ~~lil 165 (422)
T COG0738 161 SSLIL 165 (422)
T ss_pred HHHHH
Confidence 98776
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-15 Score=166.03 Aligned_cols=390 Identities=15% Similarity=0.039 Sum_probs=223.5
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
+.+..+.....+..+++.++..+|.++.|+++|| +|||+++++++++..++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5667788888999999999999999999999999 799999999999999988888887
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 212 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~ 212 (588)
.+++.+++.|++.|++.++.......+++|.++++ . |+.+.++ ......++.+++.+++++.. +||+.
T Consensus 169 ---~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~---~---R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 169 ---PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK---Q---RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred ---CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc---h---hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 46889999999999999999999999999999742 2 2234445 55666778888888888887 89999
Q ss_pred HHHHHHHHHHHHHHHHh--ccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccc
Q 007827 213 LGIPAFMMFLSCAMFFL--GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFR 290 (588)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (588)
+++..+..++.+++.++ ..+++...+.+. ++..+.+....+..+.+.. ..... +
T Consensus 237 ~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~---~~a~~~l~~~a~~n~~~~~--~~~~~-------------------~ 292 (521)
T KOG0255|consen 237 FWIISIPSGLFLLLWFLPPESPRWLLSKGRI---DEAIKILKKIAKLNGRKLS--VKELL-------------------R 292 (521)
T ss_pred HHHHHHHHHHHHHHHHccCcChHHHHHcCch---HHHHHHHHHHHhhcCCCCC--cHHHH-------------------H
Confidence 99877766665555222 233333333222 2333333333332211000 00000 0
Q ss_pred hhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHH-HHHHHHHHHHhcccceeeeeccccccccCCcccc
Q 007827 291 CLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIW-ASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 369 (588)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (588)
... ...+. +.....+...+.++...+.. ++.+......+ ....+++... ... ..+|
T Consensus 293 ~~~---~~~~~--~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~~y~gl~--------~~~----~~lg----- 349 (521)
T KOG0255|consen 293 LEL---LLRPL--KLLFTEPKISFLDLFRTPRL-RYRTLYLLFIWFVFSLVYYGLS--------LNV----SGLG----- 349 (521)
T ss_pred HHH---HhhHh--hhhccCCCCchhhhhcCHHH-HHHHHHHHHHHHHHhHHHHhhh--------hhh----hhcC-----
Confidence 000 00000 00000000111111111111 22221111111 1111111111 000 0111
Q ss_pred ccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccccc
Q 007827 370 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 449 (588)
Q Consensus 370 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (588)
.................... .....++.||| .....+.++..+++++.++...
T Consensus 350 ~~~~~~~~~~~~~~~p~~~~----~~~~~~~~gR~-------~~~~~~~~~~~~~~~~~~~~~~---------------- 402 (521)
T KOG0255|consen 350 GNIYLNFTLSGLVELPAYFR----NGLLLPEFGRR-------PPLFLSLFLAGIGLLLFGWLPD---------------- 402 (521)
T ss_pred chHHHHHHHHHHHHhhHHHH----HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHhhc----------------
Confidence 11111111111111111111 12245665554 6677777888888887777531
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
....+.......+...+........+.+..|..|+..|..+.+...+...+++++++.+........
T Consensus 403 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-------- 469 (521)
T KOG0255|consen 403 -----DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-------- 469 (521)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Confidence 1121112222233333444444455889999999999999999999999999999998775442210
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
+ . ..+..++....+.+.+..++.+|++++.+.+.
T Consensus 470 -~------~--~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 470 -P------L--LGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred -c------c--chHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 0 1 11222566777777777788899988877443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-21 Score=209.23 Aligned_cols=397 Identities=16% Similarity=0.160 Sum_probs=219.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHH
Q 007827 61 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 140 (588)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (588)
..++..+...++..++++++|+++|| +|||++++.+.++..++.++..++.. ..+++.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~ 104 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS---------------------YNNFWM 104 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc---------------------cccccc
Confidence 46788999999999999999999999 69999999999999999888887631 025778
Q ss_pred HHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc---ccchhhHHHHHH
Q 007827 141 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVSWAWGLGIPA 217 (588)
Q Consensus 141 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~---~~g~~~~~~~~~ 217 (588)
+.++|++.|++.|...+....++.|..|+++ | +...++......+|..++..++..+.. ..+||+.+.+..
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~---R---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 178 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH---R---GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA 178 (451)
T ss_pred ccccccccccccccccccccccccccccccc---c---cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999887422 2 234556666677787777666544332 245999988877
Q ss_pred HHHHHHHHHHH--hccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhh
Q 007827 218 FMMFLSCAMFF--LGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 295 (588)
Q Consensus 218 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (588)
+..++.++... ...|++...+.+.+++.+..+ + .+.++....+. ++..
T Consensus 179 ~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~-------~--~~~~~~~~~~~----------~~~~----------- 228 (451)
T PF00083_consen 179 IPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLR-------K--LRGKEIEDEEI----------EEIK----------- 228 (451)
T ss_pred cccccccccccccccccceecccccccccccccc-------c--ccccccccccc----------cccc-----------
Confidence 65544433322 233554433333333221111 0 00000000000 0000
Q ss_pred cccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhh
Q 007827 296 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 375 (588)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 375 (588)
.+ .++.......|+.+.+++. .++++...+.+...+.. . .......+........|...........
T Consensus 229 ---~~---~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~-----~-g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 295 (451)
T PF00083_consen 229 ---AE---KKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQF-----S-GINFIFYYSPSIFENAGISNSFLATLIL 295 (451)
T ss_pred ---cc---cccccccceeeeecccccc-ccccccccccccccccc-----c-cccccccccccccccccccccccccccc
Confidence 00 0000000022332222111 11222111111111100 0 0001111111111112100000011111
Q ss_pred hhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCcccccCCccc
Q 007827 376 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISG-IIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 376 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
...+.++.++ ...+.||+||| +.+..+.++++++++.++ ..... .. ...
T Consensus 296 ~~~~~~~~~~--------~~~~~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~-------~~--------~~~ 345 (451)
T PF00083_consen 296 GLVNFLGTLL--------AIFLIDRFGRR-------KLLIIGLLLMAICSLILGIIFFLG-------VS--------SSS 345 (451)
T ss_pred cccccccccc--------ccccccccccc-------cccccccccccccccccccccccc-------cc--------ccc
Confidence 1112222222 22358888887 345566666655555443 11000 00 000
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
..+...++...+..........+..+.+..|.+|++.|+++.++....+.+++.+++.+.+.+.+..+
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------ 413 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------ 413 (451)
T ss_pred ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------
Confidence 01222222222222233345567778899999999999999999999999999999988887764321
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 007827 535 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 574 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (588)
....|.++++++++..++.+++.||+|+++.||.++
T Consensus 414 ----~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 414 ----GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred ----ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 124677788888888888999999999999987654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-15 Score=155.38 Aligned_cols=176 Identities=9% Similarity=-0.093 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHH--HHHHHHHHHHhhhhh-hhhhhccccchhHHHHHHHHH-H
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTL--INIFSGTTNFATLLG-AFLSDTYFGRYKTLGFASVAS-F 102 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~-G~lsDr~~Grr~~l~~~~~~~-~ 102 (588)
..+..+.+.+.+.+....+.+|.|++ +.|.|.++.|.+ .....+...+.+|+. ++.+|| +||||.+++.+.+. .
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHH
Confidence 34455667777777777788999986 569999999997 456677777777777 668999 69999976655332 2
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+....+.... + .......++....+.++..+...+...++..|..+ ++.++...
T Consensus 82 ~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~------~~~~~~~~ 135 (390)
T TIGR02718 82 ACLASLALVG--P------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFN------GRTLAKGN 135 (390)
T ss_pred HHHHHHHcCC--c------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------HhhhhHHH
Confidence 1222222110 0 00112233344444445555555555555555432 22223444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
+....+..+|..+++...+++.+.+|||..|++.+++.++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555556678888888888889999999999999887766555544433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-15 Score=160.35 Aligned_cols=174 Identities=12% Similarity=0.002 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-----chhHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-----RYKTLGFASVAS 101 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~l~~~~~~~ 101 (588)
..+....+...+. +.....++.++++++|+|.++.+...+...+...+ .++.|.++|| ++ ||+.++++.++.
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~-~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDT-FPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHh-cCCCCccchHHHHHHHHHH
Confidence 3444466777777 77777888899999999999999999998888877 4559999999 68 777777776555
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
. ...+..++.. +.......+.+++.+++.+....+..++..|..+ +++ +..+..
T Consensus 106 ~-~~~~~~l~~~---------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~ 159 (468)
T TIGR00788 106 S-AILYGLLPGK---------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSL 159 (468)
T ss_pred H-HHHHHhcccc---------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCe
Confidence 2 1122222210 0123334447888899999988899999999987 222 222345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.++.|...++|..+++.++|++.+.++|+..|++.+++.++......+
T Consensus 160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 666677778999999999999999999999999887776666443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=158.40 Aligned_cols=381 Identities=12% Similarity=0.014 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH--HHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL--GMLVL 108 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i--~~~~~ 108 (588)
...+...+++-...++.+.++++..|+|.++.|.+.++..+...+.+|+.|.++|| +|.||-++.......+ +-+..
T Consensus 14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~ 92 (412)
T PF01306_consen 14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFI 92 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444544567899999998899999999999999999999999999999999 7988766554433221 22222
Q ss_pred -HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh----hcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 109 -SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI----GAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
...+ .++ .+ ++++..+.++ +.....|...++..+. .|..+.=|+
T Consensus 93 ~v~~p---ll~-----------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--------sr~~~feYG 141 (412)
T PF01306_consen 93 YVFGP---LLQ-----------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV--------SRRNGFEYG 141 (412)
T ss_dssp HTHHH---HHH-----------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--------HHHHSS-HH
T ss_pred HHHHH---HHH-----------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHH--------HHHhcCCcc
Confidence 1111 000 01 2233333333 3333334444443221 222234477
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
-....+.+|.+++..++|++.+ .+-+..|++..+..++..++....+++.+++.+..+...
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~------------------ 202 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG------------------ 202 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS------------------
T ss_pred hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc------------------
Confidence 7778889999999999998886 456677787655444444444444433211110000000
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHH-HHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWA-SAIVYY 342 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 342 (588)
++ .+.....+ ..+....+++.....+.. ....+.
T Consensus 203 -----------------~~---~~~~~~~~-------------------------~~~l~k~~~fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 203 -----------------AK---KDKVSLKD-------------------------VLSLFKMRNFWFFVLFVIGVAAIYD 237 (412)
T ss_dssp -----------------S---------HHH-------------------------HHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cC---CCCCcHHH-------------------------HHHHhcchhHHHHHHHHHHHHHHHH
Confidence 00 00000000 000111122222222222 222334
Q ss_pred HHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHH
Q 007827 343 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 422 (588)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~ 422 (588)
...+|++.++..+ .+.. + ..+..++.++.+.+.+=.+++ .+...+.+|.|.| ..+.++..+++
T Consensus 238 vfdqqf~~y~~~~---f~~~-~-----~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k-------~~Lllag~i~~ 300 (412)
T PF01306_consen 238 VFDQQFPIYFASF---FQSA-G-----QGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAK-------NLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHHHHT---SSSH-H-----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hccc-c-----cChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChH-------hHHHHHHHHHH
Confidence 4444443333211 1111 0 223344555544443222221 1122246665544 56666666676
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHH-HH
Q 007827 423 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FV 501 (588)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~-~~ 501 (588)
+=....+.. .+.+++++.-.+.++-..+......-|+.+.+|+|+.++...+. ..
T Consensus 301 iRi~~~~~~------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~ 356 (412)
T PF01306_consen 301 IRIIGSGFA------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQF 356 (412)
T ss_dssp HHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTT
T ss_pred HHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 666666553 46667777888899988888899999999999999999999886 68
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 502 GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 502 ~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
..++|..+.+.+.|.++|.. +++..|++.+++.+...++-.+..++.
T Consensus 357 ~~~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 357 AKQIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp THHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 89999999999999999865 566788898888887777766665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-15 Score=148.15 Aligned_cols=419 Identities=15% Similarity=0.091 Sum_probs=227.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.....+....-+....|.+..+..++......+..+++...|.++|+ +||||.+.+..+..++..+.-..+
T Consensus 93 ~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s-------- 163 (528)
T KOG0253|consen 93 EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS-------- 163 (528)
T ss_pred HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC--------
Confidence 33444555566677899999999999999999999999999999999 799999877765554443333322
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.++..+++.|.+.|+|.|+ .|...++-.|..|..+... -.+......+|.++.-.+
T Consensus 164 ----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~-------~~V~~~~waig~v~ea~l 219 (528)
T KOG0253|consen 164 ----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL-------LTVMSFFWAIGQVFEALL 219 (528)
T ss_pred ----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc-------chhHHHHHHHHHHHHHHH
Confidence 4678899999999999999 8888888888776422211 112224567777777777
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHH-HHh-ccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCcccc--ccC-C
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAM-FFL-GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTL--HNH-I 274 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 274 (588)
.=.+..++||||..........+.+.. ++. .++++.-.+.++.+ ..+.+.++.|-++...+.....-. .+. +
T Consensus 220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k---AletL~kiArmNg~qlplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK---ALETLHKIARMNGKQLPLGVLESSAIDRQEQ 296 (528)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH---HHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence 666677789998776655433333333 222 34554433333333 345555666655554443221100 000 0
Q ss_pred CcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHHHHHHHHH------HHhc
Q 007827 275 PKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYV------ALVQ 347 (588)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~ 347 (588)
++.+..+. .. .+. ++..++..+ +++ + .-+|+.+.. ...+.....++. -..|
T Consensus 297 e~~~~~~~-~~------------~a~---ke~rg~~~n---Lls--p-~lrkttlllw~iwfgnafsyyg~VLlttelfq 354 (528)
T KOG0253|consen 297 EESDLDDS-KS------------SAA---KEVRGGTTN---LLS--P-KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQ 354 (528)
T ss_pred hhhchhhh-hh------------ccc---cccccchHh---hcC--h-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 11111000 00 000 000000000 111 1 112222222 221222222221 1111
Q ss_pred ccc----eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHH
Q 007827 348 QQT----YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423 (588)
Q Consensus 348 ~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~ 423 (588)
... +.-+++...+.+.. ........+ .+.+..-+....+-.+..-+.+|+||| +.|...+++.++
T Consensus 355 sgd~c~~~~r~~p~e~e~~~~--c~~s~~~dY--rdllitslaefPGlLIt~~iverlGRK-------kTMal~l~~f~i 423 (528)
T KOG0253|consen 355 SGDACPLYNRFLPTELETRAN--CPLSVAKDY--RDLLITSLAEFPGLLITGVIVERLGRK-------KTMALSLILFGI 423 (528)
T ss_pred ccCccccchhcchhHHHhhhc--CCccchhHH--HHHHHHHHhhCCchhHHHHHHHHhcch-------hHHHHHHHHHHH
Confidence 111 11122222222110 000111111 111111111111111122247778888 567777766666
Q ss_pred HHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHH
Q 007827 424 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF 503 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~ 503 (588)
..+.+..-. +......+++. .-++....+...|.|..|++|...|+++.|.+...+
T Consensus 424 flfll~~c~--------------------~rn~~tvllf~----arafisg~fqvaYvYtPEVyPTavRatgvGtcSsma 479 (528)
T KOG0253|consen 424 FLFLLTTCK--------------------TRNAYTVLLFT----ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMA 479 (528)
T ss_pred HHHHHHHhc--------------------CcchhHHHHHH----HHHHHhchheEEEEecCcccchhhhhcchhhhhhHH
Confidence 555443311 01122222222 233344556677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 504 AISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 504 ~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
.+|+++.|++. ..+.. +......+.+++++++++..+++-.|+|+|++
T Consensus 480 RIggI~~p~iA-~~~e~-----------------s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 480 RIGGIFSPVIA-MRAEL-----------------STSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhhhhhHHH-HHhcc-----------------ceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999888 44332 12234567788888888888888889988864
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=162.86 Aligned_cols=357 Identities=14% Similarity=0.119 Sum_probs=214.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhh----ccccchhHHH-HHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSD----TYFGRYKTLG-FASVASFLGMLVL 108 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr~~l~-~~~~~~~i~~~~~ 108 (588)
+..+........+++.|+++.+|+++...|.+..+..+...+..|+.|+++| | +||||..+ .+.+..+++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 3444444555678899999999999999999999999999999999999999 7 69776554 5667777776666
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... |. . .........+++..++..++......+..++..|+.++.++ | ....++-..+
T Consensus 90 f~~~--p~----~----------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--R---~~l~~~~~~~ 148 (428)
T PF13347_consen 90 FSPP--PA----G----------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--R---TRLSSWRMIF 148 (428)
T ss_pred hccc--cc----h----------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--h---hhHHHHHHHH
Confidence 5431 10 0 00012344557777777899999988889999999875332 2 2345555556
Q ss_pred HHHHHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccC
Q 007827 189 FTFAMMISLTVIVYVQSDV-------SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (588)
..+|..+...+.+.+.... +|++...+.++..++..++..+..|+..++.+++++....
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~-------------- 214 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISL-------------- 214 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccc--------------
Confidence 6666665555555443221 5887777766666555555444444311101000000000
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVY 341 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (588)
+..++.. .+++. ....+ +.....
T Consensus 215 -------------------------------------------------~~~~~~~----~~nr~-~~~l~---~~~~~~ 237 (428)
T PF13347_consen 215 -------------------------------------------------RDSLRSL----FRNRP-FRILL---LAFFLQ 237 (428)
T ss_pred -------------------------------------------------ccchhhh----cccch-HHHHH---HHHHHH
Confidence 0000000 01111 11111 111111
Q ss_pred HHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHH
Q 007827 342 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 421 (588)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~ 421 (588)
+...........++..+ ..+.+ -....+.....+..++..++..+ +.+|+++| +.+..+.++.
T Consensus 238 ~~~~~~~~~~~~y~~~~---vl~~~---~~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~ 300 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTY---VLGNE---GLISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLA 300 (428)
T ss_pred HhhhhhhhhHHHHHHHH---HhcCc---hhhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHH
Confidence 11111111111111111 11100 01122333344445555555433 48887766 4666777777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-------cchHHH
Q 007827 422 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSI 494 (588)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-------~~~rg~ 494 (588)
+++..+..... ..+.++.++..++.+++.+..+...+++..|..+ +|..|.
T Consensus 301 ~~~~~~~~~~~----------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 301 ALGFLLLFFLG----------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHHHH----------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 77776665542 1366777888889999999988898999998876 355799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007827 495 GGSLAFVGFAISNYLNGFLISMVHRFTK 522 (588)
Q Consensus 495 ~~~~~~~~~~ig~~l~~~~~~~l~~~~~ 522 (588)
..|+.++...++..+++.+.+.+.+..|
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-14 Score=156.65 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=113.2
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
....++.+++|- .....|+.+...++..+..++.|.|+|. ||||+.++.+.++..+|.++++-+
T Consensus 65 ~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------- 128 (599)
T PF06609_consen 65 SILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------- 128 (599)
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC--------------
Confidence 445678889985 4667899999999999999999999999 799999999999999999998876
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
++...++++..+.|+|.|.... ....++|..|. +.|. .++.+..........+++.++..+..
T Consensus 129 ----------~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~----k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 129 ----------QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPN----KWRG--LGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ----------CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhccc----chhh--hHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 4567799999999999877664 45567998863 2222 23333333333344456666666666
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+|||.|++..+...+++++.+
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 67899999998887766655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=170.18 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=139.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
..+......++......-++++|+++..+.|++.+.+.++..++.++.|+++|| +||||.+.+++++++++.++.++..
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChH
Confidence 344444445556666667788999999999999999999999999999999999 6999999999999999999887754
Q ss_pred cccc----------------CCCCCCCCC---------CCCCCCCCC--chhHHHHHHHHHHHHhhcccccccchhhccc
Q 007827 113 AISK----------------LHPPDCGNQ---------DSGACPGPT--PWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 165 (588)
Q Consensus 113 ~~~~----------------~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 165 (588)
.+.. ..+..|+++ +...|...+ ...+.+++++|+++|+|.+...+...+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 2110 012233211 000111111 1245678899999999999999999999999
Q ss_pred cCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc----------------------chhhHHHHHHHHHHHH
Q 007827 166 QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV----------------------SWAWGLGIPAFMMFLS 223 (588)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~----------------------g~~~~~~~~~~~~~~~ 223 (588)
.+|++ .++...++++....+|.++|+++++++.+.+ +|+..|++.+++.++.
T Consensus 200 ~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 200 FAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred cCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99742 2345688899999999999999999876532 2677787776665555
Q ss_pred HHHHHhccc
Q 007827 224 CAMFFLGSR 232 (588)
Q Consensus 224 ~~~~~~~~~ 232 (588)
.+.+++..+
T Consensus 274 ~v~l~~~p~ 282 (633)
T TIGR00805 274 SIPFFFFPK 282 (633)
T ss_pred HHHHHhCcc
Confidence 444444333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=156.38 Aligned_cols=175 Identities=13% Similarity=0.170 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc---cccchhHHH-HHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDT---YFGRYKTLG-FASVASFLGML 106 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~l~-~~~~~~~i~~~ 106 (588)
+..+..++.+..+..+++.|+++..|+++..+|.+..+.-+.-++..|+.|+++|| ++||||..+ ++.+..+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 34445556666667889999999999999999999999999999999999999996 268876555 45566776665
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++...+. . +.......+++...+..++..+...+..++.+|+.++ + +.|++..++..
T Consensus 96 llf~~p~---~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~---~eRt~l~s~r~ 152 (460)
T PRK11462 96 LAYSTPD---L---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--P---TQRISLQSWRF 152 (460)
T ss_pred HHHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--H---HHHHHHHHHHH
Confidence 5544311 0 0012345566667777888888888888999988765 2 22345677777
Q ss_pred HHHHHHHHHHHHHHHHhccc-------cchhhHHHHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSD-------VSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
.+.++|..+++.+...+... .+|+....+.+++.++...+.+
T Consensus 153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777765443332 2466655554444434433333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=151.12 Aligned_cols=120 Identities=19% Similarity=0.088 Sum_probs=100.2
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
..+.+..-+|.+-+.+.++.++.++..|.+|||| |||+++.+|++..++...+.+.+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S---------------------- 118 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS---------------------- 118 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3445667789999999999999999999999995 99999999999888877776665
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
.++..+.++|++.|+.-|-... +.++++|.++++++ ..+++.......+|..+||++++++..
T Consensus 119 --~~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r------~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYR------PLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhc------cceeeeeehhhhcchhhcchhhhHHHh
Confidence 4666677779999999987654 78999999986332 245777888999999999999999987
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=152.22 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=130.8
Q ss_pred hhhhhhhHHHHHHHhcCCCchh-hhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSIT-ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
+-...+++..|+.+++|++.++ .|.+.+++..++.++.+++|+++|| +|.|+++.++.+.+.+...++.++
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa------- 112 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLG------- 112 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH-------
Confidence 3455667788999999999999 9999999999999999999999999 799999999999999988888886
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLT 198 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 198 (588)
.+...+.+.|++.|++.|+.. +...++...+|+ +.++.+.++...+..+|.+++++
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~------kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP------SRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999 899999999973 22346688889999999999999
Q ss_pred HHHHhccccchhhHHHH---HHHHHHHHHHHHHhc
Q 007827 199 VIVYVQSDVSWAWGLGI---PAFMMFLSCAMFFLG 230 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~ 230 (588)
++++ ...+||++-+.+ ......+++++.++.
T Consensus 169 L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 169 LGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998 446788865544 333344444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=157.67 Aligned_cols=426 Identities=15% Similarity=0.090 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHhhhhhh---hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSS---NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~---~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+.+..|..+...+++.. .+-..+.++++.+..+.+|+.++......+..|+.+.+.|| +|.|++.++|.++.++|.
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~ 125 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGL 125 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHH
Confidence 33344444444444332 34456678999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF-TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
++.+++. +.+.++ ..-++.|+|.|..+.++...+...|+ +.|+.+.++
T Consensus 126 ~lssF~~------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-------kkR~lA~Gi 174 (509)
T KOG2504|consen 126 LLSSFAT------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-------KKRALATGI 174 (509)
T ss_pred HHHHHHh------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-------HHHHHHHhh
Confidence 9988874 454544 44566699999999999999998884 223355666
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCC
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPE 264 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (588)
-..+..+|.++=|.+..++.+.+|||+.+++.+.+.+-.++.....+|.....++. .. ++. ++..... +
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~-~~~--------~~~~~~~-~ 243 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EE-KDL--------RNSAASV-E 243 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hh-hhh--------ccccccc-c
Confidence 66677788888888888999999999999988777765555555555543332222 00 000 0000000 0
Q ss_pred CCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 007827 265 EPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 344 (588)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (588)
...........+ ....+.+ ..........+..+.......+.... .++.+-..++..+...+...+..+.+...
T Consensus 244 ~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ll~~~~fl~~~~~~~~~~~g~~~p 317 (509)
T KOG2504|consen 244 STPKPVELRISE----RDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLS-MLDLSLLKDPKFLLLALSNLFAYLGFNVP 317 (509)
T ss_pred cccccccccccc----CCCCCCc-ccccchhhhhhCCccccccchhhhhh-hhhHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0000000 00000000000000000000000000 00011111111111111111111111111
Q ss_pred HhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHH
Q 007827 345 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT 424 (588)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~ 424 (588)
+...+.+.. .....+.... .....++..+.++-++.+.+ .|+-. .++.....++++...++
T Consensus 318 ~~~l~~~~~-~~g~~~~~aa-----~l~Siigi~~i~gRi~~G~l--------aD~~~-----~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 318 FVYLPSYAK-SLGLSSNDAA-----FLLSIIGVSDIIGRIILGLL--------ADKPG-----IRALVLFLLTLLIAGLA 378 (509)
T ss_pred HHHHHHHHh-hcCCChhhhH-----HHHHHHHHhhhhhhhhhhhh--------cCccc-----cchHHHHHHHHHHHHHH
Confidence 111111111 1011111000 11122333333333333333 44422 23445566666666666
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 007827 425 MIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA 504 (588)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ 504 (588)
..+.... .+++.++...++.|++.+...........+..+.+.-+.+.|+..+...
T Consensus 379 ~~~~p~~------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g 434 (509)
T KOG2504|consen 379 RLFLPFA------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG 434 (509)
T ss_pred HHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence 6555443 3556667777888888888777777788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 505 ISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 505 ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
++..+++.+.+.+.|.+ ++|...|++.+...+++....++..
T Consensus 435 i~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 435 IGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999888765 2456677777777777765444433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-13 Score=148.38 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=115.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
.|++..+. ..+++++|+|..+.+++.++.. ...++++++|+++|| +|||+++.++.+++.++.++++++...
T Consensus 43 ~y~fsv~s-~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~----- 114 (591)
T PTZ00207 43 MYAFNLIS-GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQE----- 114 (591)
T ss_pred HHHHHHHH-HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 34544444 4568899999999999887743 445677789999999 699999999999999999998886210
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH-HHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLT 198 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~ 198 (588)
.-..+.+.+++.|++.|+|.+.+.+.....+.++||+ .++.+.++......+|+++ +++
T Consensus 115 -------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 115 -------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred -------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 0013578889999999999998888888888999862 1246788888888899975 555
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 199 VIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+++. .+|+..|++.++..++..++
T Consensus 175 ~~~l~~--~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 175 QLAFFS--DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence 555544 35777777666555444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=148.70 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=129.5
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 133 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (588)
.++-+.++.|++.....+.+.+..|+.|.+.|| +|+|-.+++|+..+...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 467788899999999999999999999999999 799999999999999999999887
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHH
Q 007827 134 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 213 (588)
Q Consensus 134 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~ 213 (588)
.++++++++|.++|+|.++..++..++++|.||+++++ ++.++..-.+..+|-.+||.++|.+.+..|++.+|
T Consensus 157 --~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er-----~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 157 --NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNER-----GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred --chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhh-----hHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 45789999999999999999999999999999875432 24577777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007827 214 GIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ 230 (588)
.+.+++.++-..+-++.
T Consensus 230 lVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 99988887766654443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.4e-13 Score=139.32 Aligned_cols=363 Identities=12% Similarity=0.114 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchh-HHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASF 102 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~l~~~~~~~~ 102 (588)
..-....+..++.+..+..++..|+++.+|+|+..+|.+..+.-+.-++..|+.|.++||. +||+| -++++.+..+
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 3334456666777777889999999999999999999999999999999999999999973 46655 4556667777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+...++..+.... ...+....++...+.++++.....+-.++.+++-++ +++| .+..
T Consensus 95 i~~~l~F~~p~~~------------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER---~~l~ 151 (467)
T COG2211 95 IVAVLLFITPDFS------------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQER---ASLT 151 (467)
T ss_pred HHHHHHHcCCCcc------------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHH---HHHH
Confidence 7777776653210 013456667778888999999888888998888765 3332 4567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHHHHhccce-eeccCCCCC-hhhhHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQS-------DVSWAWGLGIPAFMMFLSCAMFFLGSRL-YAKVKPEGS-PLASTVQVFVA 253 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 253 (588)
++-....++|..+...+.+.+.. ..||+....+.++...+..+..++..+| ..+..+.++ ......+.+..
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~ 231 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL 231 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH
Confidence 77777778887766555544432 2456665555554444444443333222 111111110 00000000000
Q ss_pred HHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhh
Q 007827 254 AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIP 333 (588)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (588)
.. .|+. +...+.
T Consensus 232 ~~-------------------------------------------------------------------~Nrp-~~~~l~ 243 (467)
T COG2211 232 IF-------------------------------------------------------------------KNRP-LLLLLL 243 (467)
T ss_pred HH-------------------------------------------------------------------ccch-HHHHHH
Confidence 00 0111 111111
Q ss_pred HHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHH
Q 007827 334 IWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR 413 (588)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~ 413 (588)
...+.+...+...+...++..+.-..- .............+.+++.++ .-++.+|+||| +.
T Consensus 244 ---~~l~~~~~~~i~~s~~~yy~~y~lg~~-----~l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk-------~~ 304 (467)
T COG2211 244 ---MNLLLFIAFNIRGSIMVYYVTYVLGDP-----ELFAYLLLLASGAGLLIGLIL----WPRLVKKFGKK-------KL 304 (467)
T ss_pred ---HHHHHHHHHHHHhhhhheeEEEEcCCh-----HHHHHHHHHHHHHHHHHHHHh----HHHHHHHhchH-------HH
Confidence 122223333333332222221111000 011111111112222222233 22346666655 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccC------
Q 007827 414 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF------ 487 (588)
Q Consensus 414 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~------ 487 (588)
+.++.++.+++.....+. ...+..+.+...++.+++.+...+..|++++|..
T Consensus 305 ~~~~~~~~~i~~~~~~f~----------------------~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~ 362 (467)
T COG2211 305 FLIGLLLLAVGYLLLYFT----------------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362 (467)
T ss_pred HHHHHHHHHHHHHHHHhh----------------------cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH
Confidence 888888888887777664 1245566666778888899998888898888754
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 488 -PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 488 -P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
-.|..|...|..++..-+|.+++.++.+.+....
T Consensus 363 TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 363 TGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566788899999999999999999999998776
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=145.71 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=120.4
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 131 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (588)
+++.++...+.+.+.+++.+++.++.+++|+|.|| +.-.+.+....+.+.+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 36888999999999999999999999999999999 686776666665555444333333
Q ss_pred CCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh------cc
Q 007827 132 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV------QS 205 (588)
Q Consensus 132 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~------~~ 205 (588)
.+.+.+++.|++.|+..++.+|+...+++..|.+++.. .-+++++...++|.++|.++...+ ..
T Consensus 132 ----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g------~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 132 ----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG------LRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh------hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 46788999999999999999999999999999754433 348899999999999999998775 33
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 206 DVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
..||||.|++.+++.+...++.++..|+
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecC
Confidence 4789999999988776665554444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=129.49 Aligned_cols=325 Identities=15% Similarity=0.142 Sum_probs=208.5
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 007827 47 LLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD 126 (588)
Q Consensus 47 l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (588)
+..-+++++|+|.+++|.+.+...++..+.+++..+|+.| +|.++.+..++++.++|..+=...
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~--------------- 97 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG--------------- 97 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 3345678999999999999999999999999999999999 799999999999988887765442
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 007827 127 SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+.+.++.+-.+.|.|.+......++++-+.||. ..+...++|....++|+++++.+...+.++
T Consensus 98 ----------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~ 160 (395)
T COG2807 98 ----------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQH 160 (395)
T ss_pred ----------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence 356789999999999999999999999999962 234678888889999999999999888877
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCC
Q 007827 207 V-SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 285 (588)
Q Consensus 207 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (588)
. |||..+..-+...++++++.+....+.. .+.....
T Consensus 161 ~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~----------------------------------------- 197 (395)
T COG2807 161 SGGWRGALGFWALLALLALLIWLPQALREQ--AASIATK----------------------------------------- 197 (395)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc-----------------------------------------
Confidence 6 7999888877776666665443221110 0000000
Q ss_pred CCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCC
Q 007827 286 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN 365 (588)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (588)
.....+.||. .......+.+-+.+..+|....+++.++..+....+ +-|
T Consensus 198 ---------------------~~~~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~-~aG- 246 (395)
T COG2807 198 ---------------------LVSVRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA-EAG- 246 (395)
T ss_pred ---------------------cccccccccC--------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH-Hhh-
Confidence 0000122311 111111223345566667777666665544322111 111
Q ss_pred ccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 007827 366 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 445 (588)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (588)
....+..+..+....+.-. +.+|..++ . .........+.++++-+.+.+
T Consensus 247 --------~llsl~~l~~~~~~ll~P~----la~R~~n~----r--~~~~~~~~~~l~G~~G~~~~P------------- 295 (395)
T COG2807 247 --------SLLSLMQLAQLPTALLIPL----LARRSKNQ----R--PLVVLALLLMLVGLVGLLLAP------------- 295 (395)
T ss_pred --------hHHHHHHHHHHHHHHHHHH----HHHHhccc----c--hHHHHHHHHHHHHHHHHHHhh-------------
Confidence 1111111111111111111 24442211 1 233333344444443333321
Q ss_pred ccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 446 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 446 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P-~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
....++| .++.|+|.+..++....++...++ ++.-+.-.|+......+=..+||.+.|.++|.+
T Consensus 296 --------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 296 --------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred --------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 1123333 477899989999988888888765 466677788888888888999999999999987
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=128.23 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=108.5
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
..-+..+++.+.+++.++..++.++++.-..+.+.++|++.||.+|-|..-++-++..++|.+..+....
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi---------- 132 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI---------- 132 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH----------
Confidence 3456778888899999999999999999999999999999999989887666666666677766655321
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
.+.++.+.++|++.|+|.-....+.+.+...+|.. +.....++++.....+|...--.+.+++
T Consensus 133 -----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG------KELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 133 -----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG------KELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred -----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecC------ccccchhhHHHHHHHhhceeeeeecHHH
Confidence 15789999999999999888888889999988853 3345678998888889988766666666
Q ss_pred ccc
Q 007827 204 QSD 206 (588)
Q Consensus 204 ~~~ 206 (588)
.+.
T Consensus 196 y~~ 198 (459)
T KOG4686|consen 196 YDT 198 (459)
T ss_pred HHH
Confidence 554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-10 Score=124.97 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccch
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 538 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 538 (588)
+.+.+..++.|+..+...+..-++..+..|++..+...|++.+....+..+||.+.+.+.+.++ +
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~ 445 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------S 445 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------C
Confidence 3344556678899999999999999999999999999999999999999999999999988762 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 007827 539 LDYFYYLVAALGLLNFGFFLLC 560 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~~~~~ 560 (588)
.++.+....++.++++++.+..
T Consensus 446 ~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred chhHHHHHHHHHHHHHHHHhhc
Confidence 5566667777777776655333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-10 Score=115.36 Aligned_cols=374 Identities=13% Similarity=0.091 Sum_probs=210.2
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-----chhH-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-----RYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQ 125 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (588)
..|++++..-.+.++....+.. ...+..|+.||+. + ||-- +..+.++.+.+..+...+...- .++
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l-------~~~ 77 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL-------AES 77 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH-------ccc
Confidence 4578899888888888877666 5799999999994 7 6644 4445556666655554432110 000
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 126 DSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
. ..+++++........+...+.|+|.+...++..++++|..+++++ ....++.|....+|.+++.++.+.+.+
T Consensus 78 ~-~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R------~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 78 G-QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERR------PRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred c-cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 011233333445566677778999999999999999998875322 346888899999999999999998887
Q ss_pred ccchh----hHHHHHHHHHHHHHHHHHhccceeeccC-CCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCccccc
Q 007827 206 DVSWA----WGLGIPAFMMFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCIN 280 (588)
Q Consensus 206 ~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (588)
.++.. ..-....+..++.++..+-.+++.++.. .++++.....
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~-------------------------------- 198 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFR-------------------------------- 198 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHH--------------------------------
Confidence 77632 2222222222333333332223222111 0111111000
Q ss_pred CCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeec-ccc
Q 007827 281 SKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQS 359 (588)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 359 (588)
..|+++..++ +.+++ ...+++....+++... .+--|. ...
T Consensus 199 -------------------------------~a~~~~~~~~--~a~~f--~~fl~l~t~a~~~QD~----iLEPygg~Vf 239 (403)
T PF03209_consen 199 -------------------------------EAWRQVWASP--QARRF--FVFLFLGTLAFFMQDV----ILEPYGGEVF 239 (403)
T ss_pred -------------------------------HHHHHHHhCC--ChhHH--HHHHHHHHHHHHhhHH----HcCCchhHHc
Confidence 1111111000 01111 1111222222222221 111121 112
Q ss_pred ccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 360 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 439 (588)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 439 (588)
..+.+ ....+......+.+++..+..+. +.+|.+ +.+...+|..+.++++..+....
T Consensus 240 gmsv~------eTT~Lta~~~~G~L~G~~~~g~~---l~~~~~-------~~~~a~~G~~~~~~~f~lii~a~------- 296 (403)
T PF03209_consen 240 GMSVG------ETTRLTAFWGGGTLLGMLLAGFL---LSRRLG-------KKRTAALGCLLGALAFALIILAG------- 296 (403)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHHH---hcCCCC-------chHHHHHHHHHHHHHHHHHHHHH-------
Confidence 22222 23344555566666666555444 222322 22344455555555544433321
Q ss_pred ccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 440 LSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
...+.+.+....+++|++.+.......+...+.++++..|..+|.+...+.++..++.++++.+.|
T Consensus 297 --------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 297 --------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred --------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112455677788999999999999999999999999999999999999999999999999999988
Q ss_pred hccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 007827 520 FTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFG 555 (588)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~ 555 (588)
... ++........|..+|..=++..+++..
T Consensus 363 ~~~------~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 363 LVR------ALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHH------HhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 753 222211122455555554444444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=130.67 Aligned_cols=175 Identities=12% Similarity=0.043 Sum_probs=125.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++..+..+...+.....++.+..++|.|+++++|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHH
Confidence 3434434344444444455566789999999999999999998888778888899999999999 699998877665554
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
+........ .+...+++.+++.+++.|...+....+..|.+|+ . ++...
T Consensus 294 ~~~~~~~~~------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~---~----~g~~~ 342 (393)
T PRK15011 294 CFYAGMLMA------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG---Q----AGSAT 342 (393)
T ss_pred HHHHHHHHH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C----cchHH
Confidence 443333222 2344556677777777666656566777787752 1 23467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+.++...++|..++|.++|.+.+.+||+..|++..+..++++++.+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77777889999999999999999899999998877777666665544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=128.39 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=134.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-cchhHH-HHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKTL-GFASVAS 101 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~l-~~~~~~~ 101 (588)
|.+|++.+..++..+..|++..+.|.|+.|..|+|..++++..+.+-++...+++++||+|||++ |||... ++++++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 45578888889999999999999999999999999999999999999999999999999999988 777644 3334444
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++......+++ .++.+..+..+.+|+...+..-.+.....|..|. ++.+++
T Consensus 332 ~~~~~~~w~~~~----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAPN----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCCC----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH------hhccch
Confidence 444455555432 3566677777777766555444444555676653 444556
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 182 FNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 182 ~~~~~~~~~~-g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+....+..+ |++.+....+++.+.+||...|.+..+..+++.+++...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6666667777 888888888899888999999988777666666654443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=131.45 Aligned_cols=170 Identities=13% Similarity=0.054 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH-
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS- 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~- 109 (588)
...++..+.+|++..++|.|+++.+|++..+.+++.....++..++.+++|+++|| +|||+.+..+.++..++...+.
T Consensus 257 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 257 GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788889999999998899999888888888889999999999999999 6999998887765444333222
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
...+ .+...+++++++.+++.+...+....++.+.+|++ . |+.+.+..+...
T Consensus 336 ~~~~----------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~----~--Rg~~~g~~~~~~ 387 (490)
T PRK10642 336 LINS----------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH----I--RYSALAAAFNIS 387 (490)
T ss_pred HHhC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----c--chHHHHHHHHHH
Confidence 2111 23456677888888777666666777888888742 2 234566544555
Q ss_pred HHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHHh
Q 007827 190 TFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 388 ~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 388 VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 666778899988887654 4666665544444444444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-11 Score=123.84 Aligned_cols=164 Identities=15% Similarity=0.027 Sum_probs=124.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.++...........+|.|+++++|.++.+.+++.........++.+++|+++|| +|||+.+..+.+...+........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH-
Confidence 333333344455678889988999999999998888777778889999999999 699999887766554443333332
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+++.+.+.|++.+...+....+..|..|+ + ++...+.++...++|
T Consensus 286 -----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 286 -----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG----R---AGAATTLYTNTGRVG 335 (375)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----h---hhHHHHHHHHHHHHH
Confidence 2445566778888888888777777888887752 1 125688888889999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
..++|.+++++.+..||+..|++.++..+++.++..
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999989999999988877766666544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=130.57 Aligned_cols=174 Identities=10% Similarity=-0.038 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+.+..++....+++...++|.|+++++|+|..++++......++..++.+++|+++|| +|||+.+.....+..++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHH
Confidence 4555556666666677788899999999999999999999999999999999999999999 699988766544443333
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++.+... .+....++.+++.|++.............|.+|+ +.++.+.++.
T Consensus 339 ~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~------~~~g~a~gi~ 390 (467)
T PRK09556 339 TLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK------KAIGVANGIK 390 (467)
T ss_pred HHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch------hhHHHHHHHH
Confidence 22222211 2334455666677754333222223455687763 3345678888
Q ss_pred HHHHHH-HHHHHHHHHHHhcc------------ccchhhHHHHHHHHHHHHHHHHH
Q 007827 186 YFTFTF-AMMISLTVIVYVQS------------DVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 186 ~~~~~~-g~~i~~~i~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+...++ |..++|.+.|++.+ ..||+..|++..+..+++++..+
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 888886 77899999999988 57899999887776666655444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=126.42 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+...+..++....++++..++|.|+++.+|+|..+++.+.+.+.++..++.++.|+++|| +|||+.+.....+.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHH
Confidence 333344455556667788999999999999999999999999999999999999999999 6999988877665555444
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
+.... .+...+.+..++.|++.+...+...++..+..+++ + +...+...
T Consensus 287 ~~~~~------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~----~~~~g~~~ 335 (394)
T PRK03699 287 LFVNT------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA---S----PKLVNFIL 335 (394)
T ss_pred HHHHc------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---C----HHHHHHHH
Confidence 43332 12334455667778877777777777777765421 1 12356677
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
...++|..++|.+.+++.+..|++..+++..+..+++.+
T Consensus 336 ~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 336 TCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 788899999999999999999999998876666555543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=123.97 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+.+....++..+.......+.+.|. +++|.+..+.+.+.....++..++++++|+++|| +|||+.+..+.++..++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHH
Confidence 3333333444444444555666665 5689999999999999999999999999999999 6999999888888777766
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
+...... .+...++...++.+++.+...+..++++.|.+|+++ ++..+++++
T Consensus 286 ~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 337 (377)
T TIGR00890 286 AMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLY 337 (377)
T ss_pred HHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHH
Confidence 6554421 122334456677788888888777888899886422 235688888
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 187 FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 187 ~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
...++|..++|.+.+.+.+..||++.|.+.++..+++
T Consensus 338 ~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 338 TAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 8999999999999999999999999998877655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-10 Score=115.75 Aligned_cols=382 Identities=11% Similarity=0.039 Sum_probs=202.0
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
+....|.++.+| +...+-|...+|.+.+....+.+-|+.|| +|-|.+++++.++-++|..+=.++. .|.++
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss-~p~v~------ 135 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISS-LPFVP------ 135 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhcc-Ccccc------
Confidence 344557777788 77888899999999999999999999999 6999999999999999987755542 23221
Q ss_pred CCCCCCCCCCchhHH--HHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 125 QDSGACPGPTPWQLA--FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
..++ ..+.+-.+.+.+.-.+.....-+..-+|+++++... ...+ .+++.+|.+++-++.+.
T Consensus 136 -----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A----~~~~--v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 136 -----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIA----TVLG--VMGNPLGVAVGFLLPPI 198 (480)
T ss_pred -----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhh----hhHH--HhcchHHHHHHhhccce
Confidence 1233 666777787777777766555555667765433322 2232 23344555555444443
Q ss_pred hc------cccchhhH--HHHHHHHHHHHHHHHHhccceeeccCCCCChhhh----HHHHHHHHHHhhccCCCCCCcccc
Q 007827 203 VQ------SDVSWAWG--LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS----TVQVFVAAIKKRHLKLPEEPWLTL 270 (588)
Q Consensus 203 ~~------~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 270 (588)
+. ++.+|... |+...++..+.+++..+.+++.++.||..+.... ..+.+...+
T Consensus 199 lV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~--------------- 263 (480)
T KOG2563|consen 199 LVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCF--------------- 263 (480)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHH---------------
Confidence 33 23446542 4433333333334444444444444443211110 001111011
Q ss_pred ccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccc
Q 007827 271 HNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT 350 (588)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (588)
.++..++..+...+....++..+..+..
T Consensus 264 ----------------------------------------------------~n~~F~il~~~ygi~~g~F~~l~~~l~~ 291 (480)
T KOG2563|consen 264 ----------------------------------------------------KNRQFIILAICYGIGLGLFNSLSTLLNL 291 (480)
T ss_pred ----------------------------------------------------cCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 1122222222222222223333222221
Q ss_pred eeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHH-HHHHH
Q 007827 351 YVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT-MIISG 429 (588)
Q Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~-~~~~~ 429 (588)
.+.. .++-. ...+....+..+..+++... ...+.||..+ ++...++ .+....++ +.+..
T Consensus 292 ~l~~-sgY~~---------~~aG~ig~l~iv~Gmlga~~----~gii~Dktk~----fk~~~~v--~~~~~~v~~~~l~~ 351 (480)
T KOG2563|consen 292 ALCP-SGYEG---------VFAGYIGALMIVAGMLGALA----SGIIADKTKK----FKLTTLV--LYLFALVGTLMLLT 351 (480)
T ss_pred cccc-ccCCc---------cccchhHHHHHHHHHHHHHH----HHhhhhhhhh----HHHHHHH--HHHHHHHHHHHHHH
Confidence 1110 01100 12233333433333333333 3334666321 2222222 22222233 22222
Q ss_pred HHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHH
Q 007827 430 IIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYL 509 (588)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l 509 (588)
... ..-..++++....+++.++....|...++..|..-|...++..|+.++..++-..+
T Consensus 352 ~t~---------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~ 410 (480)
T KOG2563|consen 352 CTL---------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI 410 (480)
T ss_pred hhc---------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence 210 01233455556677777788888999999999977777889999988877777777
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 510 NGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 510 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
-.+..+...+..+. .+| ....-+..+...++..++..++.+.++++..|+.
T Consensus 411 ~~~~~~~~~~~~~~---~~~---------~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 411 LVFIMGILAEDLGP---PGN---------TFPANIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred HHHHHHHHhhccCC---CCC---------CccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 77777766543321 111 1112244556666777777888877777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=124.89 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=126.6
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~ 114 (588)
+..+++.....+++.|+. +.|+ .+.+.....+.++..++.++.|+++|| +||||.+..+.++..++.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 227 LASIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh---
Confidence 334555566677888875 4566 345666777888888999999999999 699999888877777766555543
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 194 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 194 (588)
.+.+.+++..++.|++.+...+.......|.+|+ +.++..+++++...++|..
T Consensus 300 ---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 300 ---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred ---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHH
Confidence 2345567778899999988887777777776653 2335678888889999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC
Q 007827 195 ISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK 238 (588)
Q Consensus 195 i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
+++.+.+++.+..||++.|++.++..++++++..+.+++.+++.
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAV 396 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 99999999999899999999888777777666555555444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=122.92 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
..++...++..+.+|....+++.|+++.+|++......+.....+...++.++.|+++|| +||||+++.+.++..++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 333445566677888888999999999999998877666666777788899999999999 6999998887766555443
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
.+..... . ......+++..++.+++.+...+...+++.|.+|. +. ++++.++.+
T Consensus 332 ~~~~~~~-~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~----~~--r~tg~g~~~ 385 (438)
T PRK09952 332 PFFMALE-A-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA----SY--RYSGAGVGY 385 (438)
T ss_pred HHHHHHH-c-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc----ch--hHHHHhHHH
Confidence 3322210 0 01233444556666788777777788999999974 22 234455433
Q ss_pred H-HHHHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHHHHHhc
Q 007827 187 F-TFTFAMMISLTVIVYVQSDV--SWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 187 ~-~~~~g~~i~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
. +..+|+.++|.+.+++.+.. +|+.++.+..+..+++++..+..
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 3 44588899999999987643 48887777666666665554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=122.88 Aligned_cols=164 Identities=15% Similarity=0.027 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+......++....++....++|.|+++++|++..+.+.+.....++..++.+++|+++|| +|||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHH
Confidence 4455556666677777788899999988999999999999999999999999999999999 699998776555444332
Q ss_pred H-HH-HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 106 L-VL-SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 106 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
. .. .+... .+.+.++....+.+++.+...++..+++.|.+|++.+. .+++
T Consensus 300 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~------~~~~ 351 (394)
T TIGR00883 300 VPLLMALLDS----------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY------TGAS 351 (394)
T ss_pred HHHHHHHhcC----------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee------eEee
Confidence 1 22 12110 23455666777888888888888999999999753221 2344
Q ss_pred H-HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHH
Q 007827 184 W-YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAF 218 (588)
Q Consensus 184 ~-~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~ 218 (588)
. +.....+|..++|.+++++.+..| |++.++...+
T Consensus 352 ~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred ehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 4 334566888899999999998887 8776665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-09 Score=117.52 Aligned_cols=196 Identities=16% Similarity=0.260 Sum_probs=138.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
.+......++.....+-+.+.|+++..+.|++.+.+-++..+...+-.+..-| .-|-+.+-+++++++++.+++++-..
T Consensus 106 ~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf 184 (735)
T KOG3626|consen 106 AFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHF 184 (735)
T ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHH
Confidence 33333334666666677778999999999999999999999999999999999 47778888999999999988876422
Q ss_pred ccc------------CC-C-----CCCCCCCCCCCCC---------CCc-hhHHHHHHHHHHHHhhcccccccchhhccc
Q 007827 114 ISK------------LH-P-----PDCGNQDSGACPG---------PTP-WQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 165 (588)
Q Consensus 114 ~~~------------~~-~-----~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 165 (588)
+.. .. + ..|.++.+..|.. .++ .-+.+++++.++.|+|....++...+|+=|
T Consensus 185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD 264 (735)
T KOG3626|consen 185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD 264 (735)
T ss_pred hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence 111 00 1 1122222211111 111 134467899999999999999999999888
Q ss_pred cCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc------------------cc-hhhHHHHHHHHHHHHHHH
Q 007827 166 QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD------------------VS-WAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~------------------~g-~~~~~~~~~~~~~~~~~~ 226 (588)
....+ .-...+++++....+|.++|.++++++... .| |+..|++.+.+.++..+.
T Consensus 265 nvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 265 NVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred ccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 66432 234568899999999999999998876421 23 788888888877777777
Q ss_pred HHhccceeec
Q 007827 227 FFLGSRLYAK 236 (588)
Q Consensus 227 ~~~~~~~~~~ 236 (588)
+++..++.++
T Consensus 339 ~f~fPk~lp~ 348 (735)
T KOG3626|consen 339 LFFFPKELPK 348 (735)
T ss_pred HHhCcccCcc
Confidence 6766655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-10 Score=118.47 Aligned_cols=176 Identities=13% Similarity=-0.002 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+....++....+++...++|.|+.+ +|++..+++.+.+.+.++..++.++.|+++|| +|||+.+..+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 3444444455567777888899999975 89999999999999999999999999999999 699999888877766665
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.+..... .+...+ ...+.|++.+...+.......+.+++ . +.++..++..
T Consensus 285 ~~~~~~~-----------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~---~--~~~g~~~g~~ 334 (393)
T PRK09705 285 CGFIWLP-----------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ---P--AIAGKLVAFM 334 (393)
T ss_pred HHHHHcc-----------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCC---H--HHHHHHHHHH
Confidence 5443221 111112 22456788888777766666676642 1 2335678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+...+++..++|.+.+++.+..| |...|.+..+..++..+......++
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999998876 7788877766666655554544444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=122.70 Aligned_cols=176 Identities=13% Similarity=0.028 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCC--------chhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMK--------SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.++..++..........+++.|+. +.|.+ .+..+.+.+...+...++.++.|+++|| +|||+++..+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 333444444444445567788875 45544 3566888999999999999999999999 6999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++..+...... +..+.+.+++..++.|++.+...++...++.|.+|+ +.+++
T Consensus 291 ~~v~~~l~~~~~~--------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~------~~~g~ 344 (418)
T TIGR00889 291 WALRFGFFAYGDP--------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV------HIRAS 344 (418)
T ss_pred HHHHHHHHHHcCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHH
Confidence 8777655554311 002345677789999999998888888899998863 33456
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 181 FFNWYY-FTFTFAMMISLTVIVYVQSD------VSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 181 ~~~~~~-~~~~~g~~i~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
.+++.+ ....+|.++||.++|++.+. +||+..|.+.++..++..+++.+..+
T Consensus 345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788886 56789999999999999876 46999998877766666555544444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=118.05 Aligned_cols=166 Identities=21% Similarity=0.262 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchh-HHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-TLGFASVASFLGMLVLS 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-~l~~~~~~~~i~~~~~~ 109 (588)
+..++..........+++.|+++.+|.+..+.+.+.....++..++.++.|+++|| +|||+ .+..+.++..++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555566677788889888889999999999999999999999999999999 69999 88888888887777666
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.. .+.+..++..++.|++.+...+...+++.|..|+ +.++..++..+...
T Consensus 261 ~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 310 (352)
T cd06174 261 LA------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPP------EARGTASGLFNTFG 310 (352)
T ss_pred Hh------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH------HHHHHHHHHHHHHH
Confidence 54 2356678889999999999999999999998863 33456788999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++|..+++.+.+++.+..+|+..+.+..+..+++.++.
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999988999999998887776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=120.21 Aligned_cols=165 Identities=12% Similarity=0.014 Sum_probs=120.4
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCch---hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSI---TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..........++++.|+.+..+.... ..+.+..+..++..++.++.|+++|| +|||+.+..+.++..++.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence 333444445566778887765442222 23555666777888899999999999 69999998887776665554444
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
. .+.+.+++.+++.|++.+...+...+++.+..+++ .++..++.++...+
T Consensus 308 ~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~ 357 (408)
T PRK09874 308 V------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRD 357 (408)
T ss_pred h------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHH
Confidence 3 23456777888999999998888888777765432 22356788888899
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 191 FAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|..+||.+++.+.+.+||++.|++.+++.+++.++.+.
T Consensus 358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877776665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=123.30 Aligned_cols=160 Identities=8% Similarity=-0.009 Sum_probs=119.4
Q ss_pred HHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 007827 38 LGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~ 114 (588)
..+......++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++|| +|||+.+..+.++..++.++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhc---
Confidence 333334455777776543 5677788899999999999999999999999 699999988888887777666654
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAM 193 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 193 (588)
.+++.+++.+++.+++.+...+....++.+.++++ .+ +..++. ++....+|.
T Consensus 313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~----~~--a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR----LS--ATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ce--eeeeeehHHHHHHHHH
Confidence 24566778888889888877777778888888642 11 223333 455678999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+++|.+.|++.+.+||+..|.+.++..++..++.+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766655544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=105.27 Aligned_cols=129 Identities=12% Similarity=-0.040 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHhcCC---Cc----hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHH-HHHHHHHHHHHHHHhhcc
Q 007827 43 TSSNLLVYLTTIFNM---KS----ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSLTAAI 114 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~---s~----~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~-~~~~~~i~~~~~~~~~~~ 114 (588)
+....|+|+++..+- ++ ...+...++..+..++.+|+.|.++|+ .|+||-.+. ..++..+.+..++....
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 346788888876544 33 334566788888999999999999999 587765543 33344445555555421
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 007827 115 SKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 194 (588)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 194 (588)
..+++...+...+..++..+......+++.|..++++..+. .+.-+....+|+.
T Consensus 112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ri------S~lg~~~gylgs~ 165 (438)
T COG2270 112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRI------SGLGWALGYLGSV 165 (438)
T ss_pred --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcc------cccccccccccch
Confidence 13456667777788899999888899999998876544443 2223334556666
Q ss_pred HHHHH
Q 007827 195 ISLTV 199 (588)
Q Consensus 195 i~~~i 199 (588)
+.-++
T Consensus 166 i~li~ 170 (438)
T COG2270 166 ILLIF 170 (438)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=116.41 Aligned_cols=170 Identities=12% Similarity=-0.072 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
....++.....++...+++.|+++.+|.|..+++++.....++..+++++.|+++|| +|||+.+ .+..+..++.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~ 288 (390)
T PRK03545 211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLL 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHH
Confidence 334444445555666778889888899999999999999999999999999999999 6987654 44433333333222
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
... .+.+.+++..++.|++.+...+...+.+.+..|+ .++.+.+.+....
T Consensus 289 ~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~ 338 (390)
T PRK03545 289 PAA-----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIF 338 (390)
T ss_pred HHh-----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHH
Confidence 211 2455666778888888877766666777766531 1235678778888
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
++|..+||.++|++.+.+|++..|+..+++.+++++......
T Consensus 339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998887777777655443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-10 Score=120.89 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=108.8
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
....++|.|+++++|++..+++++.+...++..++.+++|+++|| +|||+.++.+.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 356789999988999999999999999999999999999999999 69999988776655554433322211
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.+...+..++.+.......+..++++.|.+|++ .+++.+++++...++|+.++|.+++
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHH
Confidence 22333334444443333334556677888888642 2245688888888999999999999
Q ss_pred HhccccchhhHHHHHHH
Q 007827 202 YVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~ 218 (588)
++.+.+||+..+.....
T Consensus 424 ~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 424 LIAQRLDLGTALASLSF 440 (496)
T ss_pred HHhccCChHHHHHHHHH
Confidence 99999999887765443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=110.37 Aligned_cols=81 Identities=6% Similarity=-0.149 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------
Q 007827 136 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------- 206 (588)
Q Consensus 136 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------- 206 (588)
.++..++++.+++|.|.+...+..++++++.-++++.. +..++...+..+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~------~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAA------SRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHH------HHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 46788999999999999999999999999988654333 348888899999999999999977632
Q ss_pred -------cchhhHHHHHHHHHHH
Q 007827 207 -------VSWAWGLGIPAFMMFL 222 (588)
Q Consensus 207 -------~g~~~~~~~~~~~~~~ 222 (588)
.+|+++|++.++..++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 3688998865544333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=103.61 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 007827 66 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 145 (588)
Q Consensus 66 ~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (588)
.+.+.++..++.++.|+++|| +|||+.+..+.....++.+..... .+.+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 58 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS------------------------SNITVLIIAR 58 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh------------------------ccHHHHHHHH
Confidence 345667888999999999999 699999998888877777666554 2456778889
Q ss_pred HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 146 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 146 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
++.|++.+...+...+++.|.++++ .++...+..+...++|..++|.+.+.+.+..+|++.+++.....++..+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999999998898999999988642 2235688888899999999999999999888999998887766655555
Q ss_pred HHHh
Q 007827 226 MFFL 229 (588)
Q Consensus 226 ~~~~ 229 (588)
....
T Consensus 133 ~~~~ 136 (141)
T TIGR00880 133 LLAF 136 (141)
T ss_pred HHhh
Confidence 4443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=127.32 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 007827 64 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFT 143 (588)
Q Consensus 64 ~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (588)
....+..++..++.+++|+++|| +|||++++++.++.+++.+++.+.. +...+++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~------------------------s~~~ll~ 653 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN------------------------SESAMIA 653 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc------------------------cHHHHHH
Confidence 33556668888999999999999 7999999999888888777766652 2344566
Q ss_pred HHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 144 GLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 144 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.+++.+++.++..+...++++|++|+ +.|++++++.+....+|++++|.+++++... +...+|++.+++.+++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPS------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 67777887777888889999999974 2245789999999999999999999987664 4566777766666555
Q ss_pred HHHHHh
Q 007827 224 CAMFFL 229 (588)
Q Consensus 224 ~~~~~~ 229 (588)
.++..+
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-12 Score=138.98 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=3.0
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
....++......-+++.|+++++++|++.+.+.++..+..++..+..+| --|-|.+-++.++.++|.+++++-..+..-
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 4445555555667788999999999999999999999999999999999 467678888888899998887764322211
Q ss_pred C---------------CCCC----------CCCCCCCC-CCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC
Q 007827 118 H---------------PPDC----------GNQDSGAC-PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT 171 (588)
Q Consensus 118 ~---------------~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 171 (588)
. ...| ++++...+ .......+.+++++.++.|+|....++...+|+=|..++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 1 1112 00000011 11112235778899999999999999999999998776422
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------------------cc-hhhHHHHHHHHHHHHHHHHHh
Q 007827 172 ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD---------------------VS-WAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~ 229 (588)
-....++++....+|.++|.++++.+.+. .| |+..|.+.+++.++..+-++.
T Consensus 175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23568888888899999998888765321 23 777777776666655555555
Q ss_pred ccceeec
Q 007827 230 GSRLYAK 236 (588)
Q Consensus 230 ~~~~~~~ 236 (588)
.+++.++
T Consensus 249 FPk~lp~ 255 (539)
T PF03137_consen 249 FPKKLPG 255 (539)
T ss_dssp -------
T ss_pred CCccCCC
Confidence 5555444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-10 Score=117.34 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=132.3
Q ss_pred ccccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc-hhHH
Q 007827 17 QLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTL 94 (588)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-r~~l 94 (588)
+..+.+||.+++..+..+.....+..+....=+|+++ +.+.+.+..|+++++..++.++.+|+.|+-+.| .|+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCH
Confidence 4557789999998888888888887777777788865 588999999999999999999999999999999 585 6677
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCC
Q 007827 95 GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESG 174 (588)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (588)
+.+.++.++|.++.......|+ ..-+.++++|++.|+|.|.... .-+|+++.-.. +.|
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~--~dR 163 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNFAV-LRAYIADASTV--EDR 163 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccHHH-HHHHHHhccCc--cch
Confidence 7888888888887733332221 2567889999999999887543 56777774332 222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhc----cc---------cchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 175 KQGITSFFNWYYFTFTFAMMISLTVIVYVQ----SD---------VSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 175 ~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~----~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
. ++++....+..+|..+||.+...+. .. .-+..+-|+.+++.++.++++.+..++
T Consensus 164 ~----rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 164 P----RAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred H----HHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 2 3455444455666666666654332 11 113455566666666666555544343
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=118.08 Aligned_cols=165 Identities=10% Similarity=-0.089 Sum_probs=120.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++.....+....++|.|++ +.|++..+.+.+.....++..++.++.|+++|| +|||+.+..+.+...++.+.....
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444556667778888886 479999999999999999999999999999999 699999887666555554444332
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.+.+.+.+..++.|++.++..+...++..|.+|+++ ++...++.+....+
T Consensus 306 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~ 355 (406)
T PRK11551 306 ------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRL 355 (406)
T ss_pred ------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhH
Confidence 123445556667787777777778888899886422 34568888889999
Q ss_pred HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHH
Q 007827 192 AMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 228 (588)
|..++|.++|++.+.. +|...+++.....+++.++.+
T Consensus 356 g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 356 GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 455666555554444444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-08 Score=105.77 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=114.8
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc--c--cchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 46 NLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY--F--GRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 46 ~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~--~--Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
....|+++++|+++.+...+.+...+-. ...++.|.++|-+ + .||+-++++.++.+++...+++....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 3456888999999999988777776665 6678889999994 1 25555666666665555555443210
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
..+.....+..++..+|....-.++.+++.|....+.. .++...+..+.+..+|+.++..++|
T Consensus 83 -------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 83 -------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred -------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 02334455566777888888888888999988743221 1567788888899999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
.+.+..+++..|.+..++.++..+...+..+
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999998887766665544444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-10 Score=116.80 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=122.8
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 36 EKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 36 ~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
....+..+..+.+.|+++ .|++. .+.....+.++..+++++.|++.|| +||||.+..+.++..++.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~---- 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLA---- 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHc----
Confidence 344555666777888764 56653 4556667778888999999999999 799999988888777776655543
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 195 (588)
.+.+.++++.++.|++.+...+...+.+.|.+++ +.++..+++++...++|..+
T Consensus 300 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 300 --------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS------QVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHH
Confidence 2345567788888999988888777777887752 23456788999999999999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 196 SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 196 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+.+++.++.||+..|.+.+++.++++++.+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777776665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=120.35 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc--cchhHH-HHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTL-GFASVASF 102 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~l-~~~~~~~~ 102 (588)
.+...+..++.....++...++|.|+++.+|++..+++.+...+.++..++.+++|+++|| + |||+.. .....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHH
Confidence 4445555566666778888899999999899999999999889999999999999999999 6 445432 22222223
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+...+... .+....++..++.|.+..........+..|.+|+ +.+++..
T Consensus 334 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~ 385 (452)
T PRK11273 334 IATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 385 (452)
T ss_pred HHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh------hhhhhHH
Confidence 33322222110 1223333344444443322222223445677753 2234567
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 183 ~~~~~~~~~g~~i-~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
++.+...++|+.+ +|.+.+++.+..||+..|++..+..+++++...
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8777777887654 799999999999999999887776666655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-09 Score=110.64 Aligned_cols=178 Identities=15% Similarity=0.068 Sum_probs=138.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.++...+..++...+.|...+++.+|+++..|+|....+++...+.++..++..++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 345556677777888888899999999999999999999999999999999999999999999 788888888777777
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
..+.+.+.. .+.+..++..++.|+..+..........++..| +......+
T Consensus 289 ~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-------~~~~~a~s 338 (394)
T COG2814 289 ALLALTFTG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-------DAADLAGS 338 (394)
T ss_pred HHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-------CchHHHHH
Confidence 666665543 244556666666777666554444444444222 22235677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999998888887776654443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=115.25 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=114.0
Q ss_pred HHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccC
Q 007827 38 LGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKL 117 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 117 (588)
+.+.....++|.|+++ .|.+..+.+.+.+...++..+++++.|+++|| +|||+.+..+..+..++..... ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~----- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ----- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence 3444455678888864 69999999999999999999999999999999 6999998887777666544332 10
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q 007827 118 HPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 197 (588)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 197 (588)
.......++.|++.+...|...+.+.|..++ .+ .+...+.+....++|.+++|
T Consensus 286 ---------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~---~~---~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 286 ---------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEH---HE---LVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred ---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH---HH---HHHHHHHHHHHHHHHHHHHH
Confidence 1223455667777777778888888887753 11 12345566667899999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 198 TVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 198 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
.++|++.+++||++.|.+.+...++..+.
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=114.51 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=120.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-HHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFL 103 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i 103 (588)
..+...+..++.....+.+..+++.|+++.+|.+..+.+++.....++..++.+++|+++|| +|||+... .......+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHH
Confidence 34445556666677777788899999999999999999999999999999999999999999 69996211 11111111
Q ss_pred HHH---HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 104 GML---VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 104 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.+ +....... .......+....+.+.+.+ ..+...+++.|.+|+ +.++.
T Consensus 295 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~g~ 347 (399)
T TIGR00893 295 AGLVLSLLMFATNY--------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG------NIAGL 347 (399)
T ss_pred HHHHHHHHHHHhcc--------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh------hHHHH
Confidence 111 11111100 0122333333333344444 678888999998863 22346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 227 (588)
.+++.+...++|..++|.+.+++.+..| |+..|.+.++..+++.++.
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999999888 9999888777666655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=114.03 Aligned_cols=175 Identities=12% Similarity=0.013 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-HHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-~~~~~~~i~ 104 (588)
.+...+..++...++++...++|.|++ ++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHH
Confidence 344455566667778888889999985 589999999999999999999999999999999 69998764 233333333
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
...+...... ...+.+..++..++.|++.+...+ ..+.+.|..| + .++..+++
T Consensus 302 ~~~l~~~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~----~---~~g~~~g~ 354 (402)
T TIGR00897 302 TLALYYIPQH-------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP----K---HKGAAMSV 354 (402)
T ss_pred HHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc----c---hhHHHHHH
Confidence 3232222100 002345556677777877776544 3445555432 1 23577899
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+...++|..++|.+++++.+.+||...+++.++..+++.++..+
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887776666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-10 Score=119.81 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc-ccchhHHHHHH--HHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY-FGRYKTLGFAS--VASF 102 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~-~Grr~~l~~~~--~~~~ 102 (588)
.+......++..++++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||+ +++|+...++. +...
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344444455566677777888999986 5799999999999999999999999999999972 13333333322 2222
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++... .+.+.+++.+++.|++.+...++..+++.|.++++ .++..+
T Consensus 322 l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~ 371 (455)
T TIGR00892 322 LTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAV 371 (455)
T ss_pred HHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHH
Confidence 333333332 24566778899999999999898899999988642 234568
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 226 (588)
++++...++|..++|.++|++.+.. +|++.|++.++..+++.+.
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 8889999999999999999998877 5999998877766555543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=112.35 Aligned_cols=186 Identities=16% Similarity=0.041 Sum_probs=136.2
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
-++.|.+-+..+...-++-++..++|.|+++++|.+..+++.+...+.....+..+++|+|||| +|.+|++.+..+.++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 3566777777777777788889999999999999999999999999999999999999999999 699999988888888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.....+..+.. .+.++.-.....++...+..|+|.|. ...++...|++ ..+...
T Consensus 296 ~~~~~l~~~~~~~-------------~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-------~~G~v~ 351 (417)
T COG2223 296 LAAALLSLFLTGF-------------GHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-------ETGAVT 351 (417)
T ss_pred HHHHHHHcccccc-------------ccCcchHHHHHHHHHHHHHhccCcch----heeechHHHHh-------hhhHHH
Confidence 8777766642100 01111112223334444444555554 55556666642 234567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccce
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++.....++|+..-|...+...+..| +...|++.....+.+.++.+..+.+
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888889999888888888887777 8899988877777777665554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=113.78 Aligned_cols=168 Identities=9% Similarity=-0.037 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+...+..++.........++.+.|++ ++|.++.+.|.+.+...++..++.++.|++.|| +|+|+.+.++.+...+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHH
Confidence 3444445555666677777889999996 589999999999999999999999999999999 69999999999998888
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
..+.... .+.+.+++...+.|++.+...+....++.+. |+ .. ++.+.+.
T Consensus 284 ~~~~~~~------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~---~~---~~~~q~~ 332 (382)
T TIGR00902 284 WAIIGAI------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG---SE---IAKLQAL 332 (382)
T ss_pred HHHHHhH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH---hh---HHHHHHH
Confidence 7777654 4567788889999999999999988888875 53 11 2345665
Q ss_pred HH-HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 185 YY-FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 185 ~~-~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
++ ....+|.++++.++|++.+++|+ ..|.+.++..++++++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 54 35679999999999999999886 5566666655555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=116.14 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=115.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
..+.+...+....++|.|+++++|++..+.+++.....++..++.+++|+++|| +|||+.+..+.++..+.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (405)
T TIGR00891 247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG 325 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC
Confidence 334444555667788999999999999999999999999999999999999999 6999998877765433222221111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA 192 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 192 (588)
.+.+.+.++.++.+++.+...+..++++.|.+|++ .++..+++.+...++|
T Consensus 326 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 326 -----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLG 376 (405)
T ss_pred -----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHH
Confidence 23344555656667777777777888889988642 2345688888899999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHH
Q 007827 193 MMISLTVIVYVQSDVS-WAWGLGI 215 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g-~~~~~~~ 215 (588)
..++|.+.|++.+..| |+..+..
T Consensus 377 ~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 377 GALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999888 8776554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=116.49 Aligned_cols=186 Identities=14% Similarity=0.120 Sum_probs=143.4
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch--hHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASV 99 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~l~~~~~ 99 (588)
+.|.+....+..++.+-+...+......|.++++|++..+...+..+..+...++++++|++.|| +|.| ++++.+++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 33455554555566666777888899999999999999999999999999999999999999999 7999 88888777
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
++.+..+...+.. .+.. ....+.+.+++.-++.|+..|..++..-++.+++.|+.++ +
T Consensus 358 ~~~~i~~~g~~G~-~~~~---------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~ 415 (477)
T PF11700_consen 358 LWIIIPLYGLFGF-WPSF---------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------A 415 (477)
T ss_pred HHHHHHHHHHHHh-hhcc---------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------h
Confidence 6644333322210 0000 0013456678888899999999999999999999985332 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhc
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
..|+++.......+.+||.+.+.+.+..| .|+++....++.+++++++...
T Consensus 416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999988776 8888887777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=116.88 Aligned_cols=173 Identities=9% Similarity=-0.027 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc--chhHH-HHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG--RYKTL-GFASVASFL 103 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rr~~l-~~~~~~~~i 103 (588)
+.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| ++ +|+.. ....+...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHH
Confidence 333344444555566677899999988899999999999999999999999999999999 63 23332 222111111
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
.......... .+.....+..+..|++.............|.+++ +.++...+
T Consensus 325 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 376 (434)
T PRK11663 325 SVGSLWLMPF----------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK------EAAGAATG 376 (434)
T ss_pred HHHHHHHccc----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH------hhHHhHHH
Confidence 1111111111 1122222333333433222112223445676642 23457788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+...++|++++|.+.+++.+..||+..|++.++..+++.+...
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999887776666554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=115.03 Aligned_cols=159 Identities=9% Similarity=0.027 Sum_probs=123.6
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP 119 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (588)
..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++|| .++++.+..+.++.+++.++..+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc--------
Confidence 34566788999988899999999999999999999999999999999 588888888777776666555443
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 120 PDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+....+++.++.|++.+...+...+++.|.+|+ +.++..+++++...++|..+||.+
T Consensus 310 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 310 ----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPD------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 2345566777888888877777777888888763 234567888888899999999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.|++.+.+|++..+.+.++..++..++...
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999888887766554444443333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=115.16 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=101.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML-VLSL 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~-~~~~ 110 (588)
..++....++.+..++|.|+++.+|++..+++++.....++..++.+++|+++|| +||||.++.+.++.++... ....
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677788899999998899999999998888889999999999999999 6999988776544332221 1111
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
... ..+.........+.+++.+...+...+++.|.+|++.+ +.+.++.+...+
T Consensus 325 ~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r------g~~~g~~~~~~~ 377 (434)
T PRK15075 325 LVA---------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVR------TAGFSLAYSLAT 377 (434)
T ss_pred HHc---------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc------chheeHHHHHHH
Confidence 110 01222233334445566666666666788899875321 234555444344
Q ss_pred -HHHHHHHHHHHHhccccchh
Q 007827 191 -FAMMISLTVIVYVQSDVSWA 210 (588)
Q Consensus 191 -~g~~i~~~i~~~~~~~~g~~ 210 (588)
+++.++|.+.+++.+..|++
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCCc
Confidence 45777999999998887753
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-09 Score=115.99 Aligned_cols=172 Identities=10% Similarity=-0.016 Sum_probs=117.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHH-HHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLIN-IFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
.++.....+....+.+.|+.+++|+|..+.+.+.. ...++..++.+++|+++|| +|||+.+.++.++.++..+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677888988889999999999874 5568999999999999999 699998877666555444332221
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
... ..+...+....++..++.|...+...++..+..+++.+ +..+++.+...++
T Consensus 310 ~~~--------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~------~t~~gl~~s~~~l 363 (491)
T PRK11010 310 SIT--------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFS------ATQFALLSALSAV 363 (491)
T ss_pred Hhc--------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHH
Confidence 100 01233334444554444444444456666666653222 3458888888899
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 192 AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
|..+++.+.|++.+.+||+..|.+..++.++++++....+
T Consensus 364 g~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 364 GRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998889999999999999999988887777766655543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-07 Score=98.85 Aligned_cols=158 Identities=22% Similarity=0.165 Sum_probs=108.8
Q ss_pred hhhhhhHHHHHHHhcCCCchhh-hHHHH----HHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 41 TGTSSNLLVYLTTIFNMKSITA-TTLIN----IFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 41 ~~~~~~l~~yl~~~~g~s~~~~-~~~~~----~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
+........+.....+.+.... +.... ...+...+.++.-|.++|| +|||..+........+..+...+.
T Consensus 38 ~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~---- 112 (463)
T KOG2816|consen 38 STVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ---- 112 (463)
T ss_pred CcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH----
Confidence 3334455555555444443332 22233 3357788999999999999 599999999888887777666654
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh--hcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI--GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.++ +++ +.++ +.++..+...++++|...+ +.|...+++.+.....+.
T Consensus 113 ---------------------~~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~------~~R~~~~gll~~~~~~~~ 161 (463)
T KOG2816|consen 113 ---------------------GYW-FFL---LLGLSGGFSAIFSVGFAYVADISSE------EERSSSIGLLSGTFGAGL 161 (463)
T ss_pred ---------------------HHH-Hhh---hcccccchhhhhhhhhhheeeccch------hHHHHHHHHHHHHHHHHH
Confidence 122 222 3332 3444455677888887653 344577888888888999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
.++|.+++++....|....|.+..+..++..+...+..|+.
T Consensus 162 ~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 162 VIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999998888877777666555553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-09 Score=112.66 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=113.0
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
...+.+ ++.+++|++..+.++......++..++.+++|+++|| +|||+.+..++++.+++.+++.+...... .
T Consensus 303 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 375 (481)
T TIGR00879 303 IMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--T--- 375 (481)
T ss_pred hHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--C---
Confidence 334444 4446789999889999999999999999999999999 69999999888777777666553211000 0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
+ .+.+ .+...+....++.+.......+....++.|.+|+ +.++...+..+...++|.+++|.+.++
T Consensus 376 -~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 376 -G------SSKS-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL------SLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred -C------cccc-hhHHHHHHHHHHHHHHHccccCeehhhhhccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0222222222222222223345566777888863 223467888888999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 203 VQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.++.+|++.|++.+++.+++.++..+..+
T Consensus 442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 988889999998877776666655544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=114.82 Aligned_cols=171 Identities=14% Similarity=0.023 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhH----HHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKT----LGFASVASFLGM 105 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~----l~~~~~~~~i~~ 105 (588)
.+..++.....+....++|.|+.+++|++..+++.+.+...++..++.+++|+++|| +|||+. .....+...++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~ 336 (476)
T PLN00028 258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGG 336 (476)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHH
Confidence 333333444445667788999988899999999999999999999999999999999 687621 111111111111
Q ss_pred H-HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 106 L-VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
+ .+.+... .+.+...+..++.+++.+...+...++..+..+ +.++...++
T Consensus 337 i~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 387 (476)
T PLN00028 337 VFCIWLGRA----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-------RSLGVISGL 387 (476)
T ss_pred HHHHHhccc----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-------hhchhhhhh
Confidence 1 1111110 123334444445555544444444555555432 233456776
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
.+.+.++|+.++|.+.+ .....+|+..|++.++..+++.++.++.+
T Consensus 388 ~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 388 TGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66666666666665543 22335699999888777777766655543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=107.81 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=112.0
Q ss_pred HhhhhhhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 39 GTTGTSSNLLVYLTTI--FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
.-.++..+++.|+++. +|+++.+++...+.+..+..++.+++++++|| +|+||.+.++.++.+++.++.....
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~---- 229 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH---- 229 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 4446778899999853 79999999999999999999999999999999 7999998888777776654444321
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
+. ....+..+.|++.+..+|+..+...+.++++ ..+ +.++. ....+|+++.
T Consensus 230 --------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~----asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 230 --------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH---TSQ----GSGIL-CLAIVGGAIV 280 (310)
T ss_pred --------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhh----hHHHH-HHHHhcchHH
Confidence 11 1223555789999999999999888877631 111 22332 4667899999
Q ss_pred HHHHHHhccccchhhHHHHHHH
Q 007827 197 LTVIVYVQSDVSWAWGLGIPAF 218 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~~~~~ 218 (588)
|.+.|.+.+..|.+.+|++..+
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHH
Confidence 9999999998999888875544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=108.52 Aligned_cols=162 Identities=11% Similarity=0.027 Sum_probs=109.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
++...+.+....+++.|+.+.+|+++.+.+.+.+...++..++.++.|+++|| +|+|+.+..+.++..++.++.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~- 286 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG- 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH-
Confidence 33344444555677888888899999999999999999999999999999999 6999999888777776665443321
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.+.+..++..++.+++.+...++......+..+ +.+.. + .+..+...++|.
T Consensus 287 ----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~g~ 337 (382)
T PRK10091 287 ----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAK---GGELL--G--AAGGQIAFNLGS 337 (382)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC---cchHH--H--HHHHHHHHHHHH
Confidence 122334444555555554444433333333322 22221 2 222345678999
Q ss_pred HHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSD-VSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 194 ~i~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 226 (588)
.+||.++|++.+. .+|++.+.+.++..++.+..
T Consensus 338 ~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 338 AIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 9999999998874 68999888876655554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=109.88 Aligned_cols=167 Identities=11% Similarity=-0.064 Sum_probs=101.6
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH-hhc
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL-TAA 113 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~-~~~ 113 (588)
+....+|+...++|.|+++++|++..+.+...+...++..+++++.|+++|| +|||+.+..+.++.++....... ...
T Consensus 254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 332 (432)
T PRK10406 254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466788888999999998899999999988888888888999999999999 69999887765544333222211 110
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH-H
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-A 192 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 192 (588)
. .+....+....+..++.+...+...++.+|.+|++. |+.++++.+...++ +
T Consensus 333 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~ 385 (432)
T PRK10406 333 V---------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALF 385 (432)
T ss_pred C---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHH
Confidence 0 111211111222223333333446677899997422 23456766655443 3
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+..+|.+.+.+.....|...+++.++..+++++..++
T Consensus 386 g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 386 GGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4447777776643323555555554544444444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=110.49 Aligned_cols=156 Identities=12% Similarity=-0.005 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
........++...++.....+.|.|++..+|.++.+++++.....++..++.++.|+++|| +|||+++..+.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence 3344445555556655556678888888899999999999988888888899999999999 699999988888777665
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++..... ..+...+.+..++.|++.+...+....+..+.+|++ .++..+++.
T Consensus 342 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~ 394 (471)
T PRK10504 342 LLFMLVAL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLL 394 (471)
T ss_pred HHHHhccc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHH
Confidence 55544311 012333445566777888877777788888877642 234568888
Q ss_pred HHHHHHHHHHHHHHHHHhccccch
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+....+|..+|+.+++.+.+..|+
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999887666554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-09 Score=110.95 Aligned_cols=178 Identities=10% Similarity=-0.029 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH-
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG- 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~- 104 (588)
.+...+..++.....+++..++|.|+++..|+|..+++++...+.+...++.+++|+++|| +|+++....+.....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHH
Confidence 3444445555566677888899999998899999999999999999999999999999999 67544323333222211
Q ss_pred --HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 105 --MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
.+.+..... .+.+......++.|++.............|.+|+ +.++.+.
T Consensus 332 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~ 383 (438)
T TIGR00712 332 IAVIVYWMNPA----------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 383 (438)
T ss_pred HHHHHHHhcCC----------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh------hheeeeh
Confidence 111111100 1222233333444443222212122345677753 2223567
Q ss_pred hHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 183 NWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 183 ~~~~~~~~~g~-~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
++.+...++|+ +++|.+.|.+.+..||...|++..+..+++++..++..+
T Consensus 384 g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 384 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777764 689999999999899999988877666666655554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-08 Score=104.84 Aligned_cols=165 Identities=8% Similarity=-0.033 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+...+..++....+.....+++.|++ +.|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHH
Confidence 333344444445555666778888985 589999999999998889999999999999999 699999988888877766
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
++.... ++.+.+++..++.|++.+...+....++.+. + +.+. +...+.+
T Consensus 285 ~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~---~~~~---~~~~~~~ 333 (382)
T PRK11128 285 GLMGST------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-P---GSEV---IRLQALY 333 (382)
T ss_pred HHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---Hhhh---HHHHHHH
Confidence 655543 3566778889999999998888777777765 2 2121 2345555
Q ss_pred H-HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 186 Y-FTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~-~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
. ....+|..+||.++|++.+.+|+. .++..+++.++++
T Consensus 334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 4 445678789999999999988874 5555555444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-08 Score=104.04 Aligned_cols=163 Identities=13% Similarity=-0.037 Sum_probs=116.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
.+.....+......|.|+.+++|+++.+.++......++..++.++.|+++|| +|||+.+..+.++.+++..+..+...
T Consensus 225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~ 303 (406)
T PRK15402 225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATV 303 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556677888888899999999988887888888999999999999 69999998888877777766655421
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.. ..+...++++.++.|++.+...+......... + + +.++...+.++....+|.
T Consensus 304 ~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~---~---~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 304 IS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-S---D---VSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred cc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-c---c---ccccHHHHHHHHHHHHHH
Confidence 00 12455567788888998888776555544322 1 1 223456778888888999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMFLS 223 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 223 (588)
.+|+.+++.+.+..++....+...+..++.
T Consensus 358 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 358 TVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999888777665544444433333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=105.66 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=122.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
+.|.+.++.++...++.+...++|.|+++.+ +............+...+..|++|+|+|| +|+||++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence 4565556666666666667778999988765 33333333445667888999999999999 79999999988877776
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC------------
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE------------ 172 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------------ 172 (588)
.....+.. |. .+..+.+.+.+..+.+.++.|.-.....-++.+.||+++.
T Consensus 330 ~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 330 SALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 64433331 10 0113445555555554555555555566667777763100
Q ss_pred ---CCccchhhhhhHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHHhcc
Q 007827 173 ---SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 173 ---~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
..++..+...++......+|+++-|.+.+...+.. ++...|+...+..++++++.+..+
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11224677888888888998999998877776554 488888877777767766655543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-09 Score=111.35 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+.+.+..++..+.++......+.|.+..++ +..+.+++.....++..++.++.|+++|| +|||+++..+.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 33444445555556655555555556655566 56667777888889999999999999999 69999999988887777
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhh
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFN 183 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (588)
.+...+.. .+.+.+++..++.|++.+...+...++++|..+.++ +..++..+..++
T Consensus 301 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 301 YLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 66655431 234556667778889999888888999999876432 122334567888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccch
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+++....+|..+++.+.+++.+..||
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998876666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=106.36 Aligned_cols=165 Identities=8% Similarity=0.013 Sum_probs=115.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
..++....+.......+.|+++.+ +.+....+.+.+...+...++.+..|++.|| +|||+.+.++.++.+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGS 301 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHH
Confidence 333333444444456788887665 5566677888888888889999999999999 799999988888777766554
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYF 187 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 187 (588)
... .+.+.+++..++.|++..........+..+..+ .+. .+...+. ++.
T Consensus 302 ~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~--~at~~~~~~~~ 351 (396)
T TIGR00882 302 SFA------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFD----VRL--SATIYLIGFQF 351 (396)
T ss_pred Hhc------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cce--EEEeehHHHHH
Confidence 443 245566777888888765544444444555443 222 2233443 456
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 188 TFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
...+|+.+++.++|++.+.+||+.+|.+.++..++..++.
T Consensus 352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998877766655543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-08 Score=106.83 Aligned_cols=176 Identities=14% Similarity=0.002 Sum_probs=114.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHH--------HH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTL--------GF 96 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l--------~~ 96 (588)
.++.+.+..++....++....++|.|+++.+|.+..+++++.....++..++.+++|+++|| +++|+.. ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHH
Confidence 34555666677777888888999999999999999999999999999999999999999999 5755321 11
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+......+......... . .+....++...+.+.+.+...+.......|..| +
T Consensus 341 ~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~ 392 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------R 392 (465)
T ss_pred HHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-------h
Confidence 11111111111111100 0 122233334444445444444433333334332 2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHHHHHh
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSD---VSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
..+...++.+...++|+.++|.+.+++.+. .+|+..|.+.++..+++.++..+
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 456788888889999999999999988754 34888888877766666555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=105.95 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=100.6
Q ss_pred HhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 39 GTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
..+.+..++|.|+++ .|.++.+.+.+.....++..++.++.|+++|| +|||+.+..+.++..+..++......
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 334466788888875 69999999999999999999999999999999 69999988887766554443332211
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHh--hcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI--GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
..... ....+.++ +..+..+..+.++.|.+|+ +.++.+.++.+...++|+.++
T Consensus 319 -----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 319 -----------------DNYLL--LGACLFGLMATNVGVGGLVPKFLYDYFPL------EVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred -----------------ccHHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcH------HHHhhhhhHHHHHHhHHHHHH
Confidence 11111 22223332 2233344556777888863 223456888888889999999
Q ss_pred HHHHHHhccccchhhHHH
Q 007827 197 LTVIVYVQSDVSWAWGLG 214 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~ 214 (588)
|.+.+++.+.+|+....+
T Consensus 374 p~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 374 SMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 999999998888765433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=104.60 Aligned_cols=152 Identities=12% Similarity=0.034 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcccc-chhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFG-RYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-rr~~l~~~~~~~~i~~ 105 (588)
+.+.+...+....+++...++|.|+++ .|++..+.+.+.+...++..+++++.|+++|| +| ||+.+..+.++.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence 333444455566677788899999874 79999999999999999999999999999999 74 5666667777776666
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+..... +... ....+.|++.|...+...+.+.+..++ . +..+..+++.
T Consensus 278 ~~~~~~~~-----------------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~---~--~~~g~~~~~~ 327 (355)
T TIGR00896 278 CGLLFAPM-----------------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQ---A--AQAAALSAMA 327 (355)
T ss_pred HHHHHhhh-----------------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccC---H--HHHHHHHHHH
Confidence 55554321 1111 134677899998888777766655432 1 1223556777
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-hh
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVS-WA 210 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g-~~ 210 (588)
+...++|..++|.+.|++.++.| |.
T Consensus 328 ~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 328 QSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 77788889999999999988765 44
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-08 Score=95.41 Aligned_cols=179 Identities=8% Similarity=0.022 Sum_probs=124.9
Q ss_pred cccCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHH
Q 007827 18 LNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFA 97 (588)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~ 97 (588)
.........|.+.+++++..+..+-....-+.++++.+|+|+..++.+.+.......+..|+.|.++|| .||+-..+.+
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~ 336 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVAS 336 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHH
Confidence 334445567777788888777777777888999999999999999999999999999999999999999 5999777666
Q ss_pred HHHH-HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 98 SVAS-FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 98 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
..+. .++-..+.++.. + -+.+..++|+..........+.++...|+ .
T Consensus 337 a~~~tl~~H~~l~Ft~l-----------------------s---Py~~m~~lGLsysllAcslWP~va~~vpE------~ 384 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTFL-----------------------S---PYTSMTFLGLSYSLLACSLWPCVASLVPE------E 384 (459)
T ss_pred HHHHHHHHhhhHHhhhc-----------------------c---HHHHHHHHhhhHHHHHHHHhhhhhhhCCH------H
Confidence 5443 344444544421 1 24455566666554433344555555543 3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccccc---hhhHHHHHHH-HHHHHHHHHHh
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGIPAF-MMFLSCAMFFL 229 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---~~~~~~~~~~-~~~~~~~~~~~ 229 (588)
..+.+++..+...|+|-++.|++++.+.+.-| |--.|.+... +.+.+..+++.
T Consensus 385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34577999999999999999999999987654 4344444333 33334444343
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-07 Score=92.10 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=103.8
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
+++|++..+.+.+.........+..++.|.++|| +||||.-++.+++..++.+.--.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~---------------------- 118 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS---------------------- 118 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc----------------------
Confidence 5799999999999999999999999999999999 69999988887777665543211
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH-HHHHHHHHHHHHHHHHhccccch--
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVSW-- 209 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~i~~~~~~~~g~-- 209 (588)
.++..++++|++.|++.....+.--++........ .-+++.++.-++... ..+.+-++++..++-++.++.+.
T Consensus 119 ---~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~-g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~ 194 (354)
T PF05631_consen 119 ---SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKR-GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP 194 (354)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence 36788999999999999998887777765443221 112222333344333 22333445555666666666554
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007827 210 AWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ 228 (588)
..+|....+...++.++..
T Consensus 195 vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 7888887776666655444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-08 Score=104.10 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=104.5
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHH-HHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFS-GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
.+.+.|+.+++|+++.+.+++..... ++..++.+++|+++|| +|||+.+..+.++..+..+........+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 34455777789999999999886654 4688999999999999 6999988777666555443332211100
Q ss_pred CCCCCCCCCCCchhHHHHHHHH----HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHH
Q 007827 124 NQDSGACPGPTPWQLAFLFTGL----GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTV 199 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~----~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i 199 (588)
.+.+.+++.. +..+++.+...+....++.+.++ .+ .++.+....++|..+++.+
T Consensus 301 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 301 ------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----AT------QYALLSALASVGRVYVGPT 358 (402)
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HH------HHHHHHHHHHHHHHHHHHH
Confidence 1223333333 34556666667777777777664 22 2455555667788777778
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 200 IVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+|.+.+.+||+..|.+.+++.++++++.+.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777776655433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=105.31 Aligned_cols=174 Identities=11% Similarity=-0.056 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+......++..........+.+.|+++ .|+++++.|++.....+ ...++.+++|++.|| +|+|+.+..+.++..+..
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 333444455555555666777888865 79999999998887764 666778999999999 699999888776553332
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+....... .. . .......+....+.+++.+...+...+...+..++ ++..+..++..
T Consensus 289 ~~~~~~~~-~~----------------~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~g~~~~~~ 345 (390)
T TIGR02718 289 LLWFAQAA-FW----------------L-APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-----GDQAGTDVTAV 345 (390)
T ss_pred HHHHHHHH-cc----------------c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----ccchHHHHHHH
Confidence 22221110 00 0 01222334444455566666666666666665532 12234678888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
+...++|..++|.++|++.+..||+..|.+.+++.+++++
T Consensus 346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 8889999999999999999989999998887765555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=92.60 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 007827 66 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 145 (588)
Q Consensus 66 ~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (588)
..+......+.+++.+.+.|+ +|.|+.+.+++..+....+.... .|-+.++.+-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-------------------------~N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-------------------------PNSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-------------------------cchHHHHHHH
Confidence 677778888999999999999 79999999998887765544433 2567789999
Q ss_pred HHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 146 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 146 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.|+|.+..+.-.-.++++..+ ++.+.+-.++.+...+.+..+|.++..
T Consensus 110 allG~Gaallw~GqG~ylt~~st------~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNST------RETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred HHhhhhHHheecccceehhhcCC------hhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 99999999999988888888654 333445677777777777777655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=106.17 Aligned_cols=161 Identities=12% Similarity=-0.039 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHH-HHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTT-IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTL-GFASVASFLG 104 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l-~~~~~~~~i~ 104 (588)
+...+..++....++++..++|.|+++ ..|.+..+++.+.....++..++.+++|+++|| +|||+.. ....++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHH
Confidence 344555566677788889999999976 357888899999999999999999999999999 6977753 3333333333
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
. +..... .+....+.+..+.+++.....+.......|.+| .+.++.++++
T Consensus 324 ~-~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~a~g~ 373 (412)
T TIGR02332 324 W-LLASAT-----------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS------LQARAIAIAV 373 (412)
T ss_pred H-HHHHhc-----------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccc------hHHHHHHHHH
Confidence 2 211111 011111222222233332222323333345454 2334677999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAF 218 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~ 218 (588)
.+...++|++++|.+.+.+.+..| |++.+++.++
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 999999999999999999988764 9998876655
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=106.12 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH--HHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA--SFL 103 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~--~~i 103 (588)
.+.+.+..++.....+....+++.|+++.+|++..+.+.+.....++..++.+++|+++||..+||+........ ..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344445555556666677888999999999999999999999999999999999999999832333332221111 111
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+......... .+....++..++.|+......+....+..|.+|+ +.++...+
T Consensus 298 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 349 (379)
T TIGR00881 298 SLLVYWLNPA----------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK------KAAGTAAG 349 (379)
T ss_pred HHHHHhcCcc----------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc------chhHHHHH
Confidence 1111111100 2334445555666665555555556777888763 22346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHH
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGL 213 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~ 213 (588)
+++...++|..++|.+.|++.+.+||++.|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 888899999999999999999999998764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=109.97 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.....+..++....++......+.|+++.+|.++...++......++..++.++.++++|| +|+|+++.++.++..++.
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence 3444445555556666666667778888889877766665555567778899999999999 699999999988887777
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhhhH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNW 184 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 184 (588)
+.+.+... .+.+.+++..++.++|.+...+...++.+|..+.++. ..+|..+..++.
T Consensus 309 ~~~~~~~~----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~ 366 (448)
T PRK09848 309 LLFFWVSV----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL 366 (448)
T ss_pred HHHHHcCc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence 66654321 2455566777888999999999999999988764321 122334677888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccch
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+.....+|..+++.+.+.+.+..||
T Consensus 367 ~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 367 FSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999998877655544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-08 Score=102.00 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHhhhhh-hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTS-SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+......+.....++... .+.|.|.++.+|.+..+.+.+.....++..++.++.|+++|| +|||+.+..+.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 3444444455555555555 677888877799999999999999999999999999999999 69999888776666655
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
........ .+.+.+++..++.|++.+...+...+++.|.+|+ +.++...+.
T Consensus 291 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~ 341 (365)
T TIGR00900 291 ILVVGLTP-----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA------ELLGRVFGA 341 (365)
T ss_pred HHHHHhhc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 55544431 1256677888899999999988888999998863 334577899
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g 208 (588)
++...++|..++|.++|++.+.+|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-08 Score=100.26 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=131.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+.+-.+..++.+=+...+......|-..++|++..+...+....++...+++++.|+|.|| +|.|+++..++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence 44433344444444455667778889989999999999999999999999999999999999 79999999998887765
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
.+...+.. ....+++.-.+.|+..|+.++..=++.+++.|++++.+ .|+.
T Consensus 332 ~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~------fFgl 381 (438)
T COG2270 332 ALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGR------FFGL 381 (438)
T ss_pred HHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccc------eeeh
Confidence 55444431 22345566678899999999999999999999755444 4999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 227 (588)
|......++.+||.+.+.+.+..| -|..+....++.+++++++
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 999999999999999998876554 5666555555555555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.8e-08 Score=102.53 Aligned_cols=173 Identities=8% Similarity=0.011 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHH--hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTT--IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
..+......++..+.+.....+.+.|+.. +.+.+....+.+.....+.....+++.|++.|| +++|+.+..+.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33333444444444444444556666543 456667777888888877777888899999999 699999988887777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.....+.. .+.+.+.+...+.++|.+...|...+++.+..|++.. +..+
T Consensus 286 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~------~~~~ 336 (395)
T PRK10054 286 IGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMK------ASYF 336 (395)
T ss_pred HHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccc------eehH
Confidence 7766555431 2345566778888999888888778888887764221 2345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+... ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 5433 56689999999999999999988888776555444444333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=102.09 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
|....+....++..+++.......+.|.+..+|.+ ...+.+..+..++..++.++.++++|| +|+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 44455566667777777777777888888888877 566777888899999999999999999 7999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 182 (588)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.++. ..++.-+..+
T Consensus 303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~ 360 (428)
T PF13347_consen 303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF 360 (428)
T ss_pred HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence 8888777631 3677888999999999999999999999999975432 2334456788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+.+.....+|..+++.+.+.+.+..|+
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888999999999999998877655444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=102.95 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHH-HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYL-TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
+..++.....++...+.+.|+ ++.+|+|+.+++.....+.++..++.+++|++.|| +||||++..+.++.+++.++..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISA 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666788885 56789999999999999999999999999999999 6999998888777665554443
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
+.. +. ..+....+.|++.+..+|+..+...+.++++. . .+.++.. ..
T Consensus 344 ~~~------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~---~----~as~l~~-~~ 390 (438)
T PRK10133 344 FAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT---K----YGSSFIV-MT 390 (438)
T ss_pred HcC------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh---c----cchhHHh-HH
Confidence 321 11 12455677899999999999999999876421 1 1122222 23
Q ss_pred HHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHH
Q 007827 190 TFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSC 224 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~ 224 (588)
.+|+.++|.+.|.+.+..| -+..|++..+..+..+
T Consensus 391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4677888899999988887 7888877665444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=104.70 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
++...++.++....+...+|.+.++.+|.++...|++.+.+.+|..++.++.+++.+| +++++.+..+.++++++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHH
Confidence 3333444445445566778999999999999999999999999999999999999999 699999888888887777777
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
+++ .+.+..++..++.|++.....+...+.+....|+ ..++..++++...
T Consensus 302 al~------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~------~~~GRv~si~~~~ 351 (524)
T PF05977_consen 302 ALS------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPD------WVRGRVFSIYQMV 351 (524)
T ss_pred hcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHhHHHHHHHHH
Confidence 665 3566777788888988888877777877777753 3344668999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
...+..+|..+.|.+.+.+|.+..+.+.++..+++.++..
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877766555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=100.62 Aligned_cols=161 Identities=11% Similarity=-0.033 Sum_probs=107.9
Q ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 007827 45 SNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 124 (588)
Q Consensus 45 ~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (588)
.+.|.+ .++.|++....++......+...++.+++|+++|| +|||+.++.+.++.+++.+++......+
T Consensus 292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~--------- 360 (479)
T PRK10077 292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ--------- 360 (479)
T ss_pred HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC---------
Confidence 344544 35789988888887778888889999999999999 6999999999988888877665432100
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhccc-ccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH--
Q 007827 125 QDSGACPGPTPWQLAFLFTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV-- 201 (588)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~-- 201 (588)
........+.++.+++.+. ..|...++++|.+|+ +.++.+.++.+...++|..+++.+.+
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh------hHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111223334444444433 346678889999863 22346677777777888887765554
Q ss_pred ----HhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 202 ----YVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 202 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
++.+..+|++.|++.++..+++.++.++..|+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 34456788888888776666665554444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=96.99 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 007827 30 IGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS 109 (588)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~ 109 (588)
.+...+....++....+.|.|+++++|.++.+.+.+.....++..++.+++|+++|| +|||+.+..+.++..++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556667778889888999999999999999999999999999999999 6999998888777776665555
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 110 LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
.....+ ......++....+.|++.+...+.......|.+|+ + ++...+.++...
T Consensus 291 ~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~---~g~~~~~~~~~~ 344 (385)
T TIGR00710 291 ITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH----V---AGTASALFGTLR 344 (385)
T ss_pred HHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----c---chHHHHHHHHHH
Confidence 432100 01234455566778888888888887877776642 1 234566655555
Q ss_pred HH-HHHHHHHHHHHhccccchhhHHHH
Q 007827 190 TF-AMMISLTVIVYVQSDVSWAWGLGI 215 (588)
Q Consensus 190 ~~-g~~i~~~i~~~~~~~~g~~~~~~~ 215 (588)
.. |+..++. .+.+.+..+|...+..
T Consensus 345 ~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 345 LVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHH-HHhccccChHHHHHHH
Confidence 44 4544544 4455444445444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=97.61 Aligned_cols=156 Identities=10% Similarity=-0.027 Sum_probs=109.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
++.....++...+.++++.+++|++..+.+.+.....++..++.++.|++.|| .+| +.++.+.++..+..+++....
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~~~~~l~~~~- 302 (394)
T PRK10213 226 FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAVSALVLTLWG- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHHHHHHHHHHh-
Confidence 34444445555666444456789999999999999999999999999999999 454 444444444333323332221
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM 193 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 193 (588)
.+.+.+.+..++.|++.+...+...+++.+..|+ .. +...+.+....++|.
T Consensus 303 ----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 303 ----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD---QA----EKAGSIQVAVIQLAN 353 (394)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc---cH----HHHHHHHHHHHHHHH
Confidence 2345666778888999998888888788877652 11 123455566778999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHH
Q 007827 194 MISLTVIVYVQSDVSWAWGLGIPAFMMF 221 (588)
Q Consensus 194 ~i~~~i~~~~~~~~g~~~~~~~~~~~~~ 221 (588)
.+|+.++|++.+..|++..+...++..+
T Consensus 354 ~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 354 TCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 9999999999999999888887665443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.1e-08 Score=102.29 Aligned_cols=143 Identities=13% Similarity=-0.012 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....++....++....++| ++.+++|.+..+.+.+.....++..++.++.|+++|| +|||+.+.... +..+...++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~ 331 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLL-LGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHH-HHHHHHHHH
Confidence 33444455566666777777 6667899999999999999999999999999999999 69985544333 333322222
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.... .+....++..++.|++.+...+...+++.|.+|+ +.++..+++.+..
T Consensus 332 ~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~ 382 (398)
T TIGR00895 332 GSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT------AIRATGVGWAIGI 382 (398)
T ss_pred HHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH------HHHHHHHHHHHHH
Confidence 2211 2344566777888999998889899999998863 2335678888889
Q ss_pred HHHHHHHHHHHHHHh
Q 007827 189 FTFAMMISLTVIVYV 203 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~ 203 (588)
..+|..++|.++|++
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999998875
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=106.10 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.....+..++..+.+++...++|.|+++.+|.++.+++++.....++..++.+++|++.|| +|||+.+..+.++.+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence 3444555566667777888899999999999999999999999999999999999999999 699999988888777776
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
.++..... + ..+.+.++...++.|++.+...++......+.+|+ +.++.+.+.+
T Consensus 336 ~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 389 (485)
T TIGR00711 336 YWRAFTFT-P-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP------HKIARGSSLS 389 (485)
T ss_pred HHHhccCC-C-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHhHHHHHH
Confidence 66553211 0 02344556667888999888776666666666652 2335678888
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 007827 186 YFTFTFAMMISLTVIVYVQSD 206 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~ 206 (588)
+...++|+.+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-08 Score=105.28 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 007827 28 FVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV 107 (588)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~ 107 (588)
...+..++....+++...++|.|+++.+|.|+.++|.......++..++.++.|++.|| +|||+.+..+.++.+++..+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~ 341 (495)
T PRK14995 263 SGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYG 341 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHH
Confidence 33445555566677777889999999999999999999999999999999999999999 69999988888877777665
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH
Q 007827 108 LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF 187 (588)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (588)
+..... ..+.+..+...++.|+|.|...+.......+..|++ + ++.+.+.++.
T Consensus 342 l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~----~--~g~~~~~~~~ 394 (495)
T PRK14995 342 LAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE----K--AAAAGAIETM 394 (495)
T ss_pred HHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH----h--cchHHHHHHH
Confidence 544311 012344566778889999988887777777766532 1 2345778888
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 007827 188 TFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 188 ~~~~g~~i~~~i~~~~~~ 205 (588)
..++|..+|+.+.+.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999887654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=103.62 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=101.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCchhhhH------------HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 34 TFEKLGTTGTSSNLLVYLTTIFNMKSITATT------------LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 34 ~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
++..+.+|++..++|.+++ +.|++..+++. ...+..++..++.+++++++|| +|||++++++.++.
T Consensus 298 ~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 298 FLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHH
Confidence 3445677888888888885 67887654322 1233344556688899999999 69999998887776
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++..+..+..... +.+ ..+....+...+...+..+....+.+|.+|+ +.|+.+
T Consensus 376 ~~~~~~l~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~------~~R~~~ 429 (502)
T TIGR00887 376 TVLFFVLGFAYNHL-------------------STH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT------RYRSTA 429 (502)
T ss_pred HHHHHHHHHHHHhc-------------------chh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch------hHHHHH
Confidence 66655544431100 001 1111111111222223345566777999974 333467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSD----------VSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~----------~g~~~~~~~~~~~~~~~~~~ 226 (588)
.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988763 34455666665555554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=112.75 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCch-hhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSI-TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
+..++..++.....+....+++.|+++.+|++.. +.+++.+...++..++.+++|+++|| +++++.+.++.++.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHH
Confidence 3333344444455556677889999999999999 99999999999999999999999999 699998888887777766
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+++.+. .+.+.++++.++.|++.+...+...+++.+..|++ .+++++++.
T Consensus 314 ~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~ 363 (1146)
T PRK08633 314 FLLPTA------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAAN 363 (1146)
T ss_pred HHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHH
Confidence 665544 24556677788889999988888888888887632 234567888
Q ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAF 218 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~ 218 (588)
+...++|.++++.+++.+.. .+++...|++.+.
T Consensus 364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888888777766543 2345555554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.1e-07 Score=95.90 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
....+.+.|+++++|++..+.+.+.....++..++.++.|++.|| +|||+.+.++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999999999999999999999999999999 699999998888877777666654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-07 Score=109.94 Aligned_cols=181 Identities=14% Similarity=0.001 Sum_probs=123.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.++...+..++.++.++.+..++|.|+++.+|.+..+.+++.+.+.++..++.+++|+++|+ .++++.+..+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 344455555556666667777899999999999999999999999999999999999999998 5777766666555554
Q ss_pred HHHHHHHhhcc--c-cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 104 GMLVLSLTAAI--S-KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 104 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
+.+.+.+.... . ..+...+ .++ ....+.+.++++.++.|++.+...++..+++.+..|++.. +.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~------G~ 370 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSI----LVF---LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHR------AR 370 (1140)
T ss_pred HHHHHHhcccccccccccccch----hhh---hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccc------ee
Confidence 44433331000 0 0000000 000 0002345667788888999999998899999998875332 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAF 218 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~-~~g~~~~~~~~~~ 218 (588)
.++..+...++|..+++++++.+.. ..++...+.+.++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5787888889999999999888863 4566666555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=93.25 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=111.3
Q ss_pred HHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 37 KLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
+.........++.|+++.+|.++.+.|.+.....++..+++++.+++.|| .++|+.+..+.+. .+........
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~----- 290 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ----- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH-----
Confidence 34444555667788888999999999999999999999999999999999 6999887776433 3322222222
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
.+++...+..++.|++.+...++..+.+.+..| + +..++...+..+...++|..++
T Consensus 291 -------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~---~--~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 291 -------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGH---V--LVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred -------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc---c--cccchhHHHHHhHHHHHHHHHH
Confidence 234555667778899988888878887766432 1 1223567888888999999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHH
Q 007827 197 LTVIVYVQSDVSWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 197 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (588)
..+.+.+ ...|-+..+.+.....++...
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 9988865 456766666665444444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.3e-07 Score=89.76 Aligned_cols=168 Identities=16% Similarity=0.078 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.|.+.+..-...+.+|.+..++|.++. +.|+|+.++|++.+...+.....++..-.+++|.-.+|+..+....++.+|.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 355555666778899999999999986 6899999999999999999999999999999975567777777777788888
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH
Q 007827 106 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 185 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (588)
+.+.+.+. +...+. .+++|+|.|...|....++.+-.++.+ + -++..+.-
T Consensus 289 ~G~~~~P~-----------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgma 338 (395)
T COG2807 289 VGLLLAPG-----------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMA 338 (395)
T ss_pred HHHHHhhh-----------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHh
Confidence 77776532 222232 588999999999999999998765422 1 12344444
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHH
Q 007827 186 YFTFTFAMMISLTVIVYVQSDV-SWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 186 ~~~~~~g~~i~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~ 224 (588)
+.++.+=+.+||.+.|++-+.. +|+..........++..
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 5555555666999999988765 58877665544443333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-07 Score=95.82 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
...++|.|+++..+ ++.+.+++.....++...+..+.+++.||+++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34567888876555 778888887777766665555556666553566777777777777666555544
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 202 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~ 202 (588)
.+.+.+++...+.+++.+...|...+++.+..|++ .+++.++.+....++|..+||.++|+
T Consensus 295 -------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 295 -------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHH
Confidence 23445556667788888888888888888888642 22355788888999999999999999
Q ss_pred hcccc---c-hhhHHHHHHHHHHHHHH
Q 007827 203 VQSDV---S-WAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 203 ~~~~~---g-~~~~~~~~~~~~~~~~~ 225 (588)
+.+.. + ....+++..++.++.++
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 98763 2 24444444444444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=92.36 Aligned_cols=148 Identities=10% Similarity=-0.056 Sum_probs=100.8
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007827 36 EKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAIS 115 (588)
Q Consensus 36 ~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 115 (588)
....++.+..++|.|++ ++|++..+.++......++..++..+.+++.|| +|+|+.+....+...++.+.+.+....+
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556667787775 589999999988888888889999999999999 6999987666555554443332221100
Q ss_pred cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 007827 116 KLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI 195 (588)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 195 (588)
..+...+++...+.+++.+...+...+...+..|+ .++...++++.....++.+
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 293 -------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHH
Confidence 02334455566777888888888777776666542 1235677777777778888
Q ss_pred HHHHHHHhccccchhh
Q 007827 196 SLTVIVYVQSDVSWAW 211 (588)
Q Consensus 196 ~~~i~~~~~~~~g~~~ 211 (588)
++.+.+.+.+......
T Consensus 347 ~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 347 ASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHccCCChhHH
Confidence 8888888776443433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=77.11 Aligned_cols=132 Identities=20% Similarity=0.320 Sum_probs=93.6
Q ss_pred hHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 459 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (588)
.++.++..++..++ .||.+|| +.+..+..+..++.+..... .+.+
T Consensus 8 ~~~~~~~~~~~g~~----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 52 (141)
T TIGR00880 8 ALGQLIYSPLSGLL----TDRFGRK-------PVLLVGLFIFVLSTAMFALS------------------------SNIT 52 (141)
T ss_pred hhHHHHHHhhHHHH----Hhhcchh-------HHHHHHHHHHHHHHHHHHHh------------------------ccHH
Confidence 34444555554443 7776665 45555666665665554432 2445
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchh
Q 007827 460 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539 (588)
Q Consensus 460 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 539 (588)
......++.+++.....+....++.|.+|++.|++..++.++...++..+++.+.+.+.+.. +.
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~ 116 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GW 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------ch
Confidence 56667788888888888889999999999999999999999999999999999999886432 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 007827 540 DYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 540 ~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.+.|++.+.+.++..+..+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 117 RAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 46777777777766666555543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-07 Score=98.31 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHH
Q 007827 60 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 139 (588)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (588)
...+.+.....+...++.++.++++|| +|||+.+..+.++.+++.....+... .+.+
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 320 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPP----------------------SNVW 320 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCc----------------------chHH
Confidence 334455556667778889999999999 69999998887665544333333211 3455
Q ss_pred HHHHHHHHHHhhcccccccchhhccccCCCCCC-CCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 140 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 140 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
.+++..++.|++.+...+...++++|..+.++. ..++.-+..++.+.++..+|..+|+.+++.+.+..|+
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667777889999999999999999998864322 2233345677888889999999999999988776665
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-07 Score=100.96 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
|....++...++.+...+....+.+.|.+...+ +....+.+.....+...++.++.++++|| +|||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 444444455555566655555555545443444 45556666777778888999999999999 7999999888877666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (588)
+.+...+....+ +.+.+.+++.-++.+++.+...+...++++|..+.++ +..+|.-+..+
T Consensus 309 ~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~ 369 (473)
T PRK10429 309 SCGVLLLMGLAA-------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY 369 (473)
T ss_pred HHHHHHHHhccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence 555443321000 1345556667778889999888888999999876431 23334446678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccch
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~ 209 (588)
+...+...+|..+++.+.|++.+..|+
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888889999999999999988765554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=100.03 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch--hHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASVASFLG 104 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~l~~~~~~~~i~ 104 (588)
+.+.....+..++++....+++.|.+ ..|.+..++..+.++..+...++.+++|+++|+ ...+ ....++.+...+.
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHH
Confidence 34445556667777777788888876 899999999999999999999999999999999 4733 3344444444444
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
...+.+. +++..++..-.+.|++.|.+.......+.|....++ .+.++++
T Consensus 379 ~~~~p~~------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl 428 (509)
T KOG2504|consen 379 RLFLPFA------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGL 428 (509)
T ss_pred HHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHH
Confidence 4444444 456778888888999999998887788889886533 3456999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhcc
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGS 231 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
...+..++..+||.+.+++.+..| |...|+..++..+++..+.++.+
T Consensus 429 ~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 429 LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999988877 99999998888877776655544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-06 Score=89.81 Aligned_cols=166 Identities=13% Similarity=-0.036 Sum_probs=104.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccch---hHHHH-HHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY---KTLGF-ASV 99 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr---~~l~~-~~~ 99 (588)
+..+.+....++....+|++..++|.|+++ .|++.. .+.......+...++ .++++|| +.|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHH-hhhhhhHHHHHHHHHH
Confidence 445666667788888889999999999964 678764 555555554544444 5788888 4554 33222 232
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+.++........ .+....++...+.+++.....+...++.+|.+|++. ++
T Consensus 266 ~~a~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg 315 (368)
T TIGR00903 266 LIAAFFLALAFE------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG 315 (368)
T ss_pred HHHHHHHHHHHc------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence 233222222222 112233445555667677777777888999997522 24
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++.++.+...++|+..+|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 56888889999999999998887663 66666666665555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.3e-07 Score=98.12 Aligned_cols=132 Identities=13% Similarity=-0.004 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007827 67 NIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG 146 (588)
Q Consensus 67 ~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (588)
....+...++.+++++++|| +|||+.+.++.++.+++.+++.+... ......++..+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~ 418 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV 418 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence 34456677888999999999 69999999888887777666555421 11233344445
Q ss_pred HHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 147 LMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 147 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
+.+++.+...+....+.+|.+|+ +.++.+.++.+....+|++++|.+.+ +. ..++..++.+.++..+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPT------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccH------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 55566666667788889999974 22345688888889999999999988 33 345666776666655555444
Q ss_pred HHh
Q 007827 227 FFL 229 (588)
Q Consensus 227 ~~~ 229 (588)
..+
T Consensus 491 ~~~ 493 (505)
T TIGR00898 491 TLF 493 (505)
T ss_pred HHc
Confidence 433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-06 Score=80.35 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 007827 49 VYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSG 128 (588)
Q Consensus 49 ~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (588)
.|+.+.+|+...+.|.+.........+...+.|.|+|| .|||+. ++.+++...++.++..-
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKra----cvtycitYiLsCiTKhS-------------- 121 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRA----CVTYCITYILSCITKHS-------------- 121 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccc----eeeehHHHHHHHHhhcC--------------
Confidence 45567889999999877766666667778888999999 799996 45566666677766431
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh-HHHHHHHHHHHHHHHHHHHhcccc
Q 007827 129 ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN-WYYFTFTFAMMISLTVIVYVQSDV 207 (588)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~i~~~i~~~~~~~~ 207 (588)
.++-.++++|.+-|+.........-++...--.+++.=+.+.+..-++ ....++.+-++++.+.+-++.+++
T Consensus 122 -------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 122 -------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred -------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 345678999999999988777666554432111111111111111111 111223333444555555566554
Q ss_pred --chhhHHHHHHHHHHHHHH
Q 007827 208 --SWAWGLGIPAFMMFLSCA 225 (588)
Q Consensus 208 --g~~~~~~~~~~~~~~~~~ 225 (588)
|--.+|-..+....++..
T Consensus 195 slGPVAPFdAAacfLaigmA 214 (454)
T KOG4332|consen 195 SLGPVAPFDAAACFLAIGMA 214 (454)
T ss_pred ccCCCCchHHHHHHHHHHHH
Confidence 445666655544444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-06 Score=87.46 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..++...+.+....+.|.++.+.+|+++.+.+.+.....++..++.+++|+++|| +|||+.+..+.++..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHH
Confidence 3344444455555666778888899999999999999999999999999999999 79999988887665443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-06 Score=88.03 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc
Q 007827 410 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 489 (588)
Q Consensus 410 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~ 489 (588)
+...+..|+..-.+=++.+..+ .++|..++.=++.++..+..+.+.-+|+...+|+
T Consensus 435 Hv~v~~lgLa~~~~Rf~~~S~L------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp 490 (618)
T KOG3762|consen 435 HVNVMYLGLACNVGRFLYYSYL------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPP 490 (618)
T ss_pred ccceeeehhhHHHHHHHHHHHh------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3356777777777777777765 4667777778999999999999999999999999
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 490 NMRSIGGSLAFVG-FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 490 ~~rg~~~~~~~~~-~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
++|.+++++.... ..+|-.+|.+++|.+.... +....|..+++.+++..+.+..+-+..+++
T Consensus 491 ~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 491 GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLALFISIQLLLKRR 553 (618)
T ss_pred cchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 9999999998554 6788888888888776543 344677888888887777766665544443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-07 Score=92.86 Aligned_cols=143 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH-HHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFS-GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
.+.+.+..++..+.++....+++.|+++ +|+++.+.+.+..+.. ++..++.+++|+++|| +||||.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 4444455556677778888899999986 9999999998887665 5778999999999999 69999988888777766
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
..+..+..+... ++ + ....+.+.++.+.++.+++.+...+...+++.+.+|++. +++.+++
T Consensus 289 ~~~~~~~~~~~~---------~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGH---------HD--G--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHhcCc---------cc--c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 554443211000 00 0 001134566777888899999999999999999997532 2345776
Q ss_pred HHHHH
Q 007827 185 YYFTF 189 (588)
Q Consensus 185 ~~~~~ 189 (588)
++...
T Consensus 350 ~~~~~ 354 (356)
T TIGR00901 350 LSSLS 354 (356)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=87.70 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=100.9
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
......++..+..++.++ +.||+++| +.+.++.++.+++..+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~----------------------- 82 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGY----LSDRFGRR-------RVLIIGLLLFALGSLLLAFA----------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHS-HH-------HHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCe-------eeEeehhhhhhhHHHHhhhh-----------------------
Confidence 344445555556665444 48887765 67777777777774444431
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 534 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 534 (588)
.+.+.++...++.|++.+...+....++.|.+|++.|++++++......+|..+++.+.+.+.+..
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------------- 148 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------------- 148 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-------------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-------------
Confidence 234477888899999999999999999999999999999999999999999999999999886432
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 535 NKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 535 ~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
+.++.|++.+++.++..++...+.+
T Consensus 149 ---~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 149 ---GWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp ---HHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred ---ccccccccccchhhhhhhhHhhhhh
Confidence 3445788888888877665444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-06 Score=89.77 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=120.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+.+...+.+.++..+.--.........+-++-|++..++.++.....+...+..+++.++.|| +|||+.++.+..++.+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence 334444445555544433333333334445779999999999999999999999999999999 6999999999999888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhccc-ccccchhhccccCCCCCCCCccchhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
..+++.....+..... ++-.+..+++.++..+..+. ..|...-+.+|++|++ .|..+.
T Consensus 348 ~~~~~~~~~~l~~~~~---------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~------~R~aa~ 406 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFG---------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS------ARSAAQ 406 (485)
T ss_pred HHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc------chHHHH
Confidence 8777665532211000 01112233444444433332 2567788889999842 223567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceee
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA 235 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
++-..+..+..++-......+.+..|- +.|.+..+...+..+..+...|+++
T Consensus 407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 777777777777777777777776665 4555555555555555555556543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-08 Score=100.67 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=119.9
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
.++....+..+++.|+++++ .||..|| ..+++|..+..++.+..+..
T Consensus 72 ll~~vf~v~~~i~sPl~gyL----adryNR~-------~v~~vG~~iW~~Av~~~~fs---------------------- 118 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYL----ADRYNRK-------RVIAVGIFIWTLAVFASGFS---------------------- 118 (493)
T ss_pred chhHHHHHHHHHHHHHHHHH----HhhcCcc-------eEEeeHHHHHHHHHHHHHHH----------------------
Confidence 34444556666777886665 7876666 67888988888888877764
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 533 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~ 533 (588)
..+|.+.+.-.+.|+||..+.|...+++++.+|+..|++..++++++..+|..+|...+..+...+. .|
T Consensus 119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W---- 187 (493)
T KOG1330|consen 119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW---- 187 (493)
T ss_pred --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce----
Confidence 4677888888999999999999999999999999999999999999999999999988888765542 13
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007827 534 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 572 (588)
Q Consensus 534 ~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
+|.|.+.+++.++.+++..++.+|..++..++.
T Consensus 188 ------r~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 188 ------RWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred ------EEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 568889999999999988888888776544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=90.72 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 007827 27 PFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGML 106 (588)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~ 106 (588)
+.+.+..++.....+.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++|| +|||+.+..+.++.+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHH
Confidence 333444444455566777889999999999999999999999999999999999999999 6999888777766666555
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH
Q 007827 107 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (588)
++.+... ++.+....+....+.+++.|...+...+++++.++ +.++...++.+
T Consensus 307 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~g~~~g~~~ 359 (366)
T TIGR00886 307 LVVLGLV--------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-------RATGAVSGLVG 359 (366)
T ss_pred HHHhcCC--------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-------hhcccHHHHHH
Confidence 5544311 00033444444555555666666666777777764 12234566655
Q ss_pred HHHHHH
Q 007827 187 FTFTFA 192 (588)
Q Consensus 187 ~~~~~g 192 (588)
...++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-06 Score=84.91 Aligned_cols=170 Identities=9% Similarity=0.004 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHH-----------------hc--CCCchhhhHHHHHHHHHHHHhhhhhhhhh
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTT-----------------IF--NMKSITATTLINIFSGTTNFATLLGAFLS 84 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-----------------~~--g~s~~~~~~~~~~~~~~~~~~~~~~G~ls 84 (588)
|..+.+....|...+.||+.+-.-....+. .. ..+...--.=..+.++..+-|.++.|++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 444556677888888888866433322221 11 11111111123456677889999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhcc
Q 007827 85 DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 164 (588)
Q Consensus 85 Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 164 (588)
|| +||||++-.+.+++++.++++..... . .....+++.+|++...+. .+++.|..
T Consensus 406 er-lGRKkTMal~l~~f~iflfll~~c~~----------r----------n~~tvllf~arafisg~f----qvaYvYtP 460 (528)
T KOG0253|consen 406 ER-LGRKKTMALSLILFGIFLFLLTTCKT----------R----------NAYTVLLFTARAFISGAF----QVAYVYTP 460 (528)
T ss_pred HH-hcchhHHHHHHHHHHHHHHHHHHhcC----------c----------chhHHHHHHHHHHHhchh----eEEEEecC
Confidence 99 79999999999999888777665421 0 023455677787654444 45788899
Q ss_pred ccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 165 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
|.+|.+.+ +.+.+.......+|+.+.|.++ ...+. +-..+..+.....+++.+.
T Consensus 461 EVyPTavR------atgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 461 EVYPTAVR------ATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGIA 514 (528)
T ss_pred cccchhhh------hcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHHH
Confidence 99975322 3457777778899999999998 33332 2333334444444444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-06 Score=90.99 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccc--------hhHHHH-
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGR--------YKTLGF- 96 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--------r~~l~~- 96 (588)
++.+.+..++.+.+++....++|.|+.+.+|++-.+.|+..+...+...+..+++|.++|| +-+ ||.+-.
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHHhH
Confidence 3567788899999999999999999999999999999999999999999999999999999 444 232221
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCcc
Q 007827 97 ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 176 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (588)
+....+++.+.+.+... . . .......+.++..+.|+..+++.-+. . ...++
T Consensus 339 ~~~~~ai~l~~l~~~~~-----------~------~-~~~a~~~l~~~~~~~g~~~~Gf~~~~----~-------~~apq 389 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSD-----------E------H-RLLAVILLTIAIGLSGFNISGFYKNH----Q-------DIAPQ 389 (466)
T ss_pred HHHHHHHHHHeeeecCC-----------C------c-chHHHHHHHHHHHHcccchhhhHhhh----h-------hccch
Confidence 11112222222222210 0 0 00122233333344444444433211 1 11224
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHHHHHhc
Q 007827 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSD---VSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
..+..+++.+...++++.++|.+.+.+..+ ..|++.|.+.++..+++.+++.+.
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 446778888889999999999999988843 369999999988887777665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=89.08 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=103.7
Q ss_pred HHhhhhhhhHHHHHHHh-cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 007827 38 LGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 116 (588)
Q Consensus 38 ~~~~~~~~~l~~yl~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 116 (588)
....+..++++.|+.+. .+.+...++...+.+..+..++.+++|++.|| +++||.+.++.++.++..++.....
T Consensus 246 g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~---- 320 (410)
T TIGR00885 246 GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG---- 320 (410)
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 33335667888898643 25555556666777778889999999999999 6999998888777776665555531
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 007827 117 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS 196 (588)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 196 (588)
+. .......+.|++.+.++|+..++..+.++++. +. ..... ....+|+++.
T Consensus 321 --------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~--~~-----~s~~l-~~~~~Gga~~ 371 (410)
T TIGR00885 321 --------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT--KY-----GAAGL-VMAIIGGGIV 371 (410)
T ss_pred --------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hh-----hHHHH-HHHHhccchH
Confidence 11 22455667788888888999999999886321 11 11111 2234899999
Q ss_pred HHHHHHhcccc------chhhHHHHHHHHH
Q 007827 197 LTVIVYVQSDV------SWAWGLGIPAFMM 220 (588)
Q Consensus 197 ~~i~~~~~~~~------g~~~~~~~~~~~~ 220 (588)
|.+.|++.+.. +.+..|+++.+..
T Consensus 372 p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 372 PPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 99999999853 4778888765543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-06 Score=87.95 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=119.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++...++....+.+..|.+..+|.++............+..++.++...|++| +|+|+++.++.++.+++.+...+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455666677777788888888888888888888889999999999 799999999999999999888887
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhhHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (588)
.. ++..++++..++.++|.+...+...++++|.....+ ...+|.-+..++.+.++.-
T Consensus 323 ~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K 380 (467)
T COG2211 323 PA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK 380 (467)
T ss_pred cC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH
Confidence 42 567888888999999999999999999999875432 2333444567788888888
Q ss_pred HHHHHHHHHHHHhccccc
Q 007827 191 FAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~~g 208 (588)
+|.+++..+.+++....|
T Consensus 381 ~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 381 LGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 888888888777655544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=85.81 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=98.3
Q ss_pred hHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 459 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (588)
.++..++.++ ..++.||+||| +.+..+.++..++.+..... .+.+
T Consensus 61 ~~~~~~~~~~----~G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a------------------------~~~~ 105 (413)
T PRK15403 61 LAGGMALQWL----LGPLSDRIGRR-------PVLITGALIFTLACAATLFT------------------------TSMT 105 (413)
T ss_pred HHHHHHHHHh----hhHHHHHcCch-------HHHHHHHHHHHHHHHHHHHc------------------------CCHH
Confidence 3344444444 44569998887 56667777776666655542 3566
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchh
Q 007827 460 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 539 (588)
Q Consensus 460 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 539 (588)
.++..-++.|++++...+..+.++.|.+|++.|++.+++......++..+++.+.+.+.+.. +.
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------------gw 169 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------------HW 169 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CH
Confidence 67777888888887766677788889999999999999999999999999999888776532 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 540 DYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 540 ~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
++.|++.+++.++..+..++..+|.+
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 67888888877777665555556553
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.1e-06 Score=86.57 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
+..+...........+...|+++.-|.+....+.+.+...++-.+.-.+.+++-.| +|-|+++.++++..++=..+.+.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555567788899875544788888888888888888888999999999 69999999999888776666665
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH-H
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT-F 189 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (588)
... | .+......+++..+.|+..+.+..+...++.+..|++.+ +++.+++... .
T Consensus 293 ~~~-~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~------at~Q~l~~~~~~ 347 (400)
T PF03825_consen 293 FSD-P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELR------ATAQGLYSALSF 347 (400)
T ss_pred hcC-C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccch------HHHHHHHHHHHh
Confidence 421 0 001122334445678999999999999999999875322 3445655543 4
Q ss_pred HHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHHHHHhc
Q 007827 190 TFAMMISLTVIVYVQSDVSWA------WGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+|..+|..++|++.+.+|-+ ..+.+.+++.++..+++++.
T Consensus 348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999887644 34444444444444444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=86.95 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=115.0
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 373 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 373 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
+.+.+.-++..++..|+++. +.+|.|+| ..+.+|++++..+.+++++.
T Consensus 109 G~LFaskA~~qllvnp~~G~----l~~~iGy~-------ipm~~Gl~vmf~sTilFafg--------------------- 156 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGN----LIDRIGYK-------IPMVAGLFVMFLSTILFAFG--------------------- 156 (464)
T ss_pred hHHHHHHHHHHHHhcccchh----hHHHhccc-------cHHHHHHHHHHHHHHHHHHc---------------------
Confidence 34445556666666676544 48888877 57889999999999998875
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM-RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 531 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~-rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~ 531 (588)
.+.+.++.+=.+.|+|..+.++...+++++.+|++. |++++|+.....++|..++|.++|.+++..
T Consensus 157 ---~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---------- 223 (464)
T KOG3764|consen 157 ---NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---------- 223 (464)
T ss_pred ---chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------
Confidence 456688889999999999999999999999999755 799999999999999999999999999876
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007827 532 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 564 (588)
Q Consensus 532 ~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~ 564 (588)
+....|.+.+.++++-..+-++....+
T Consensus 224 ------Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 224 ------GKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred ------CCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 344678999999988877766665443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=84.60 Aligned_cols=176 Identities=9% Similarity=0.049 Sum_probs=129.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIF---NMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
|..|.+.+........++....-.+.|.+..+ +.+....|.+.+...+.-.+...+..++.+| +|.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 44454444444444555556666788887544 3344566778888888888999999999999 7999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.++=...++++ ++++.+.+...+.++-.+.......-|+++.+++ |-..+
T Consensus 299 ~~iRi~~~~~~------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~------rlsAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFA------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDK------RLSAT 348 (412)
T ss_dssp HHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G------GGHHH
T ss_pred HHHHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hHHHH
Confidence 88777777776 4678899999999999999999899999999963 22234
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 181 FFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 181 ~~~~-~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+.+ ++....+|.++.+.++|++.++.|++..|++.+.+.+...++..+.
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence 4554 3566788999999999999999999998888776665555554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=84.35 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=94.0
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
....+.|+++.+|.+..+.+++.....++..++.++.+++.|| +||+... ......++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 4456678888899999999998888888888899999999999 5743322 2222222222221111000
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
..+.+.++.+.++.+++.+...|...++..|.+|+ ..+...++.....++|..+++.+++.+
T Consensus 296 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 296 -----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 02345567778888999998888888888887751 123456777778899999999999887
Q ss_pred ccccchhh
Q 007827 204 QSDVSWAW 211 (588)
Q Consensus 204 ~~~~g~~~ 211 (588)
.....+..
T Consensus 358 ~~~~~~~~ 365 (394)
T PRK11652 358 PQTGQFSL 365 (394)
T ss_pred cCCchHHH
Confidence 76544443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=87.69 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 33 ETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 33 ~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.++..+...........|.+..+|. +...+.+...+.++..++.+++++++|| +|+|+.+..+..+..+...+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~ 314 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP 314 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444333344444444444553 3344566777888888999999999999 6999887655544433333332221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCC-CCCccchhhhhhHHHHHHHH
Q 007827 113 AISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (588)
. .+...+++..++.|++.+...+...++++|..+.++ ...+|.-+..++...+...+
T Consensus 315 ~----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl 372 (460)
T PRK11462 315 M----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL 372 (460)
T ss_pred h----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH
Confidence 1 222233444556677777777766778888765321 12222334556777778889
Q ss_pred HHHHHHHHHHHhccccch
Q 007827 192 AMMISLTVIVYVQSDVSW 209 (588)
Q Consensus 192 g~~i~~~i~~~~~~~~g~ 209 (588)
|..+++.+++.+....|+
T Consensus 373 g~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 373 GLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999888877655444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-05 Score=82.04 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 007827 31 GNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL 110 (588)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~ 110 (588)
..-+...++++.-...+-+|-.+.||+|..+.+.+......+..++....|++..|..+++++..+++....++..+..+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33455566666667788899999999999999999999999999999999999885578888888898888888777666
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 190 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (588)
+... .+.+.+..+.+++|++.|.+.....+...|+..+. + .+...+.+.....
T Consensus 295 a~~~---------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~---~---aG~~mG~WGaaQA 347 (403)
T PF03209_consen 295 AGPL---------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG---R---AGLFMGAWGAAQA 347 (403)
T ss_pred HHhc---------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc---c---hhHHHHHHHHHHH
Confidence 6431 34678899999999999999998889989887532 2 2467888888888
Q ss_pred HHHHHHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHHH
Q 007827 191 FAMMISLTVIVYVQSD----------VSWAWGLGIPAFMMFLSCAMF 227 (588)
Q Consensus 191 ~g~~i~~~i~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~ 227 (588)
++..++..+++.+.+- .+|..+|.+-+++.++++.+.
T Consensus 348 ~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 348 IARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765321 346777777776666665544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.9e-06 Score=84.95 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhcc---ccchhHHHHHHH-
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYKTLGFASV- 99 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~l~~~~~- 99 (588)
+.+..+..+.+...+++-.=.+++++|++ .+|.+....+.+-...-+...+.+|+.|..+||. +||||-+++...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 55555666666667776666788899985 7899999999888888899999999999999963 688887666544
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchh
Q 007827 100 ASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGIT 179 (588)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (588)
+.+++.++...+.++.. ..+|+.+.- ........++++..+.=++.-....++-+++.|+..+++..++
T Consensus 111 ~i~~~l~Lig~aaDig~---~lgd~~~~~----~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~---- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL---LLGDNERKP----VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR---- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhH---HhcCCcccc----cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc----
Confidence 45556666666544332 222333210 1124566777777777788877777789999999976443332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 180 SFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 180 ~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
+.+++.....+|+.+|+.+++|.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 47777788999999998888754
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=86.39 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=93.6
Q ss_pred hHHHHHHHhhhhhhhhHhhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchH
Q 007827 380 MLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSG 458 (588)
Q Consensus 380 ~i~~~~~~~l~~~~~~~~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (588)
.++..+..++..+ +.|| +||| +.+.++.++.++++++.+.. .+.
T Consensus 58 ~~~~~~~~~~~G~----laDr~~G~~-------~~l~~~~~~~~~g~~~~~~~------------------------~~~ 102 (475)
T TIGR00924 58 SALVYLLTSVGWW----FGDRVWGTK-------KTMVLGGIVLMLGHFMLAMS------------------------IYP 102 (475)
T ss_pred HHHHHHHHhhHHH----HHHhhcchH-------HHHHHHHHHHHHHHHHHHhc------------------------ccH
Confidence 3333444444333 4888 6766 67778888888887766652 234
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCc
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM---RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 535 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~---rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 535 (588)
+.++...++.+++.++..+....++.+++|++. |+++.++.+...++|..+++.+.+.+.+..
T Consensus 103 ~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-------------- 168 (475)
T TIGR00924 103 DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-------------- 168 (475)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 455566778889999888999999999998754 888999999999999999999999887543
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 536 KGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 536 ~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
++++.|.+.++..+++.+.++...+
T Consensus 169 --g~~~~f~~~~~~~~~~~l~~~~~~~ 193 (475)
T TIGR00924 169 --GYHVGFNLAAVGMVIGLLTFFAGRH 193 (475)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456777766655555544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0017 Score=68.30 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
.+.|.++..++..|+..+......+..+.|..|++.|..++|...++-.+|..+++.+.-.+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355666667777788788888888888899999999999999999999999888887775554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=72.59 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=104.0
Q ss_pred HhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCC
Q 007827 39 GTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 118 (588)
Q Consensus 39 ~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 118 (588)
+.|.+..+- ..+++.+|+|.+|...+.....++..++ ++.|.+.|+ +|.+.++.+|.+...+|....+++..-
T Consensus 17 t~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~---- 89 (250)
T PF06813_consen 17 TTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSG---- 89 (250)
T ss_pred cccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 445555444 4567899999999999999999999875 888999999 699999999999999999888876431
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHH
Q 007827 119 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLT 198 (588)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 198 (588)
..+....+.+.+..++.+.+.+.+.+.......+.||+ .|. ...++.-....+++.+=..
T Consensus 90 -------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~---~RG----~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 90 -------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR---SRG----TVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred -------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc---ccC----ceehhhhHHHHhHHHHHHH
Confidence 11113456667767777777666666666666788973 222 3344443344445544333
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 199 VIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 199 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
+...+.+...-...+.+.....+++++...+
T Consensus 150 i~~~~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 150 IYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333322333333333333344433333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.5e-05 Score=81.81 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=81.4
Q ss_pred Hhhhhh-ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHh
Q 007827 396 PRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 474 (588)
Q Consensus 396 ~~~~~~-~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 474 (588)
.+.||+ ||| +.+.+|.++..++.++++... .+.........+..++.++
T Consensus 67 ~LaDRilGrr-------r~iliG~il~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 67 FLADKVLGNR-------MAVMLGALLMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhccc
Confidence 348887 765 567788888777765554310 1112233344455566677
Q ss_pred HhhhhhhhhhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHH
Q 007827 475 TIIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLL 552 (588)
Q Consensus 475 ~~~~~~~~~~~~~P~~--~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~ 552 (588)
..+...+++.|.+|++ .|+++.+++++..++|+.+++.+.+.+.+.. ++++.|...++..++
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l 180 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIA 180 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHH
Confidence 7777788999999975 7999999999999999999999999886533 345677776555555
Q ss_pred HHHHHHhhh
Q 007827 553 NFGFFLLCA 561 (588)
Q Consensus 553 ~~~~~~~~~ 561 (588)
+.+.+++..
T Consensus 181 ~li~~~~~~ 189 (493)
T PRK15462 181 GLVIFLCGN 189 (493)
T ss_pred HHHHHHHhh
Confidence 555544433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-05 Score=82.54 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=74.0
Q ss_pred hhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhH
Q 007827 397 RLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 475 (588)
Q Consensus 397 ~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 475 (588)
+.|| +||| +.+.+|.++..++.+..+... .....++...++.+++.++.
T Consensus 73 laDr~~G~r-------~~~~~g~~~~~~g~~~~~~~~-----------------------~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 73 VGDHLLGTK-------RTIVLGAIVLAIGYFMTGMSL-----------------------LKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred hhhhccchH-------HHHHHHHHHHHHHHHHHHHhc-----------------------cchhHHHHHHHHHHhccccc
Confidence 4887 7776 678888888888877766531 11223445677789999999
Q ss_pred hhhhhhhhhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 476 IIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 476 ~~~~~~~~~~~~P~~--~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+...+++.|++|++ .|+++.+++.+..++|..+++.+.|.+.+.
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877 457789999999999999999999998764
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.3e-05 Score=86.41 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+..++++-++.|+|.+...+....++.|.+|++.|+++.|+......+|..+++.+++.+.+.
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3556677889999999999999999999999999999999999999999999999999887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=78.84 Aligned_cols=171 Identities=12% Similarity=0.040 Sum_probs=101.9
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhh----hhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccccc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQ----RLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 449 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~----~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (588)
.+....++..++..|+.+.+ .| |+|||+ ..+..+.+...+++.++++............+
T Consensus 43 ~i~~~~~l~~~i~~Pi~G~l----SDr~~sr~GRRr------p~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~------ 106 (477)
T TIGR01301 43 IIWLCGPLSGLLVQPLVGYL----SDRCTSRFGRRR------PFIAAGAALVAFAVILIGFAADIGHLFGDNLD------ 106 (477)
T ss_pred HHHHHHHHHHHHHHhHeeeh----hcCCCCCCCChH------HHHHHHHHHHHHHHHHHHhCchhhhhcccccc------
Confidence 33444566666777776665 66 466652 23344556666666666553211000000000
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHhh--hhcc--C
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVH--RFTK--G 523 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~r--g~~~~~~~~~~~ig~~l~~~~~~~l~--~~~~--~ 523 (588)
+.......+..+..+.+..++.....++.-+++.|.+|++.| +.+.+......++|+.++..+.+... +..+ .
T Consensus 107 -~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~ 185 (477)
T TIGR01301 107 -KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTK 185 (477)
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence 000111123344445555667777778888999999998866 57888888889999999998887642 1111 0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007827 524 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 566 (588)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~ 566 (588)
+...+.+| .++...|++.+++.+++..+.++..+|...
T Consensus 186 ~~~~~~~~-----~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 186 TEACGVSC-----ANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred cccccccc-----chHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 11112222 257788999888888998888888888654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=70.92 Aligned_cols=147 Identities=21% Similarity=0.259 Sum_probs=104.2
Q ss_pred hhhhHHHHHHHhcCCCc--hhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 43 TSSNLLVYLTTIFNMKS--ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.....+.+. .+++.+. ...+++.+.+.+...++.++.|.++|| +|||+.+..+.....++.+.+.+...
T Consensus 21 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~------- 91 (338)
T COG0477 21 LSPALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN------- 91 (338)
T ss_pred HHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-------
Confidence 334444444 3455455 478899999999999999999999999 59998888777664555444444321
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHH-HHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF-TFTFAMMISLTV 199 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~i 199 (588)
.....+++.|.+.|++.+...+...+++.|.+++ + ..++...+.... ...+|..+++.+
T Consensus 92 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 ---------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE----A-TERGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred ---------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc----h-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788899999999999999999999999863 1 233455666555 467788888877
Q ss_pred HHHhccc--cchhhHHHHHHH
Q 007827 200 IVYVQSD--VSWAWGLGIPAF 218 (588)
Q Consensus 200 ~~~~~~~--~g~~~~~~~~~~ 218 (588)
++.+... .+|++.|.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 7665543 568885555444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0027 Score=66.91 Aligned_cols=156 Identities=12% Similarity=-0.008 Sum_probs=102.0
Q ss_pred hhhhHHHHHHHh-cCCCchhhhH-HHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 007827 43 TSSNLLVYLTTI-FNMKSITATT-LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 120 (588)
Q Consensus 43 ~~~~l~~yl~~~-~g~s~~~~~~-~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (588)
.-+++..|+++. .|++..+... +.=+..-.+.+..++...++|. +|.|++++++.+...+...++...
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 346788899886 8999999863 4444455556677788899999 799999999988877777666665
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 121 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
.+...+-+.-++.|++.+.-. +..+++=...+ +.+-+ .+.+......-+|..++..++
T Consensus 92 ---------------~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~---~~~yq---~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 92 ---------------TSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVD---KEHYQ---KVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHH-HHHHHheeecC---HHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777776632 24455444443 22222 235555556666666666666
Q ss_pred HHhcc--ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 201 VYVQS--DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 201 ~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
-.+.. ..++....++......+++++.++.
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 55443 3456777777766666666655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.5e-05 Score=83.83 Aligned_cols=164 Identities=13% Similarity=0.004 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc----cchhHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF----GRYKTLGFASVAS 101 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~----Grr~~l~~~~~~~ 101 (588)
++...+..++.....|+...++|.|+++..|+|..+++.+...+.++..++.+++|+++|| + .+|......+.+.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr-~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR-LKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 3556677888888899999999999998778999999999999999999999999999999 3 4454444444333
Q ss_pred HHHH-HHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 102 FLGM-LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 102 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+.. ..+.... .......+......+.+...+++.....+.... ..+..+.
T Consensus 354 ~~~g~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g----~~k~~~~ 405 (495)
T KOG2533|consen 354 AIIGAISLLAAA------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAG----NTKALTT 405 (495)
T ss_pred HHHHHHHHHhhc------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccc----hHHhHHH
Confidence 3222 2222211 111222222333344455555666666666632 1222222
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHH
Q 007827 181 FFNWYYFTFT-FAMMISLTVIVYVQSDVSWAWGLGIPAFM 219 (588)
Q Consensus 181 ~~~~~~~~~~-~g~~i~~~i~~~~~~~~g~~~~~~~~~~~ 219 (588)
.+.+..+.+ .|.+.+++.-+.....++|...|.+....
T Consensus 406 -~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~ 444 (495)
T KOG2533|consen 406 -VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA 444 (495)
T ss_pred -HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence 222222333 33333444445555667888888554433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=79.59 Aligned_cols=124 Identities=9% Similarity=0.103 Sum_probs=86.5
Q ss_pred hHhhhh-hccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 395 VPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 395 ~~~~~~-~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
.++.|| +|+| +.+..+.++.+++..++... ..+...+....++.+++.+
T Consensus 78 G~LaDr~~G~r-------~~~~~g~~~~~ig~~l~~~~-----------------------~~~~~~l~~~~~l~gig~g 127 (500)
T PRK09584 78 GWLGDKVLGTK-------RVIMLGAIVLAIGYALVAWS-----------------------GHDAGIVYMGMATIAVGNG 127 (500)
T ss_pred HHHHHhccchH-------HHHHHHHHHHHHHHHHHHHh-----------------------cccHHHHHHHHHHHHHhhh
Confidence 345888 4765 56777777777776666542 1123344556677888888
Q ss_pred hHhhhhhhhhhccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGL 551 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~--rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~ 551 (588)
+..+....++.+.+|++. |+.+.+++++..++|..+++.+.+.+.+.. ++++.|.+.++..+
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~----------------g~~~~F~i~~i~~~ 191 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY----------------GWSVAFALSVVGML 191 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHH
Confidence 888888899999998643 456788889999999999999999987643 34677877766556
Q ss_pred HHHHHHHhhhccc
Q 007827 552 LNFGFFLLCAKWY 564 (588)
Q Consensus 552 ~~~~~~~~~~~~~ 564 (588)
++.+.+++..+..
T Consensus 192 i~~i~~~~~~~~~ 204 (500)
T PRK09584 192 ITVVNFAFCQRWV 204 (500)
T ss_pred HHHHHHHHhHHHh
Confidence 6555555444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=74.16 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=107.1
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
.+-++++.|+.+..|++..++....+.+..+.++|..++-++-.| +-..|.+.+.++...+-.+...++.
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~--------- 323 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG--------- 323 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 355789999988899999999999999999999999999999889 6888888776655444334444431
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
+ ...+.+.++.|+..+.++|++.++..+..++ ..+. -+..-....+|+++-|.+.|
T Consensus 324 ---------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~--~ts~------~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 324 ---------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGE--HTSV------GSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred ---------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc--cccc------cceeeeeheecchHHHHHHH
Confidence 1 2345566778999999999999999998873 2222 22222345689999999999
Q ss_pred HhccccchhhHHHHH
Q 007827 202 YVQSDVSWAWGLGIP 216 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~ 216 (588)
++.+..|-...+.+.
T Consensus 380 ~i~d~~g~~~~~~~~ 394 (422)
T COG0738 380 VIADMFGIQLTFLIV 394 (422)
T ss_pred HHHHhhhhHHHHHHH
Confidence 999999887776633
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.018 Score=61.59 Aligned_cols=187 Identities=13% Similarity=-0.012 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM 105 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~ 105 (588)
.+.+-...++.+.+--++-...+.|+.+.+.-+---.+..-..-.+...+..+.-|...|| .-|.|++..+.+.--+..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence 3444555566666666666667788877765455555555556667777888888999999 599998877766533222
Q ss_pred HH----HHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH-HHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 106 LV----LSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL-GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 106 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
.+ +......+. .... .......+++.. .+..+..=+......+.=.|+...-...++..++.
T Consensus 83 ~~s~~~~~~l~~~~~----------~~~~---~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 83 AASCALFLLLLSYPS----------SSSQ---SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHhCCc----------cccc---cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 11 111111000 0000 011122222222 22222222222222233344443322223444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 226 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 226 (588)
..+...=.=.+--.++|++.|.+....|......+.++..++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 4554444445788899999999999889888877777777666664
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00033 Score=77.77 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=89.6
Q ss_pred hhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 394 IVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 394 ~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
..++.||+|+| +.+.++.++..++.++.+.... + ....+.+.+.+..++.|+|.+
T Consensus 81 ~G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~---------~---------~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 81 YSFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ---------E---------VIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc---------c---------cccCcHHHHHHHHHHHHHHHH
Confidence 34568888776 6788888888888877776311 0 011356677777888899988
Q ss_pred hHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
...+.......+.+| +.||++.|+......+|..+.+.+...+... +....|++.+++.++.
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------------~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------------NTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHH
Confidence 888888888888887 5699999999999999998655555444321 2345677777777766
Q ss_pred HHHHHhhhccc
Q 007827 554 FGFFLLCAKWY 564 (588)
Q Consensus 554 ~~~~~~~~~~~ 564 (588)
.++.+.+.+..
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 66555555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.4e-05 Score=59.71 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
..++...+.....++++.|++ +.|+|+.+.|.+.++..+...+++++.|+++|| +||+|.++.....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 334445555567789999987 599999999999999999999999999999999 6999988766544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00078 Score=72.12 Aligned_cols=90 Identities=10% Similarity=0.066 Sum_probs=76.9
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHh
Q 007827 397 RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 476 (588)
Q Consensus 397 ~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 476 (588)
+.||++.| +.+.++++..++..++.++. .+...+.+.-++.|++++...
T Consensus 85 LaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa------------------------~Sl~~L~i~R~llGvaEA~~~ 133 (511)
T TIGR00806 85 LTDYLRYK-------PVLVLQALSFVCVWLLLLLG------------------------TSVWHMQLMEVFYSVTMAARI 133 (511)
T ss_pred HHHHhCch-------HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 48887766 56777777777777776664 367788888999999999999
Q ss_pred hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 477 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
....+++..+|++.|++++|+++.+..+|..+++.+.+.+.
T Consensus 134 -A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 134 -AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred -HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=74.12 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=83.0
Q ss_pred hhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 007827 375 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 454 (588)
Q Consensus 375 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (588)
++...++.-.+..|+.+. +.|+.||| ..+.+|.+..++++.+.+..
T Consensus 73 lGSsF~ilQ~~sS~~~G~----~SD~yGRk-------pvll~c~~~va~s~ll~~~S----------------------- 118 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGC----LSDRYGRK-------PVLLACLIGVALSYLLWALS----------------------- 118 (451)
T ss_pred HhhHHHHHHHHhhhhhhh----hhhhhCch-------HHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 344444444455555444 48888888 67778888888877777653
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 455 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 455 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
.++..++.+=++.|++.+...+. .+++.|.++++.|+.+++....+..+|.++||.+++++..
T Consensus 119 -~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 -RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45555666677888887776554 6899999999999999999999999999999999998865
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=79.39 Aligned_cols=136 Identities=13% Similarity=-0.081 Sum_probs=100.9
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 007827 52 TTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 131 (588)
Q Consensus 52 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (588)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.+...+...--... .
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------~ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------F 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc------------c
Confidence 45799999999999999999999999999999999 6999999998888877665432211000000 0
Q ss_pred CCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccc
Q 007827 132 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 208 (588)
Q Consensus 132 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g 208 (588)
+. .+....+..-++.+++.+....+...++.+..|++.+ ++.++++....++|..+++.+++++.++.|
T Consensus 347 gi--~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~e------gt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 GI--SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCE------SSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CC--CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCce------ehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 0122344556677788888778888999998874322 356999999999999999999999987766
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.045 Score=59.33 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCC-----chhhhHHHHHHHHHHHHh-hhhhhhhhhccccchhHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMK-----SITATTLINIFSGTTNFA-TLLGAFLSDTYFGRYKTLGF 96 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s-----~~~~~~~~~~~~~~~~~~-~~~~G~lsDr~~Grr~~l~~ 96 (588)
++......+..++-.+.|+. .--+++.+..+ .....++.+...+...+. .++.+++++| ++|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~i-----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTI-----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 34444444444444444332 23345666553 345666666665655555 8899999999 699999887
Q ss_pred HHHHHHHHHHHHHHhhc-cccC-C-CCCCCCCCCCCCCCC-------CchhHHHHHHHHHHHHhhcccccccchhhcccc
Q 007827 97 ASVASFLGMLVLSLTAA-ISKL-H-PPDCGNQDSGACPGP-------TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 166 (588)
Q Consensus 97 ~~~~~~i~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 166 (588)
....+.....++++.-. .++. | +..||.+...-.++- ..+....+++..-+.| .-...-...++..|.
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~--~~vvS~lFW~fandi 157 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG--SVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 76666655555444311 1111 1 001111111100000 0111112222222221 111111456777888
Q ss_pred CCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 007827 167 FNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 204 (588)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~ 204 (588)
++. ++.+ +.++.++.+.|+|..+++.+..++.
T Consensus 158 ~t~--~qak----Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 158 TTI--DEAK----RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CCH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 2222 4799999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0017 Score=71.86 Aligned_cols=137 Identities=13% Similarity=0.292 Sum_probs=94.3
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 373 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 373 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
.|+...+.+...+..|+++++ .|.+||| ..+..|.++..++.++.+..
T Consensus 81 ~w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA--------------------- 128 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATA--------------------- 128 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcC---------------------
Confidence 355566677777777776555 9999988 67788888888888877643
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 532 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~ 532 (588)
.+...++.+..+.|+|.+.... ....+.|..|.|.|..+.++......+....++.+...+... ..|
T Consensus 129 ---~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~W--- 195 (599)
T PF06609_consen 129 ---QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGW--- 195 (599)
T ss_pred ---CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCc---
Confidence 4566788889999998766654 355588999999998887776654444444555555444321 134
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 533 DLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 533 ~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+|.|++.+++..++++...++.
T Consensus 196 -------Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 -------RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHh
Confidence 5778887777777766555544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=77.56 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=117.7
Q ss_pred hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 007827 43 TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 122 (588)
Q Consensus 43 ~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (588)
+..+|= +-.++.+-.+.-.|.+......+-.+.-++.++|..| +|+-+++..++....+=.+..+..
T Consensus 390 v~tFLf-WHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 390 VFTFLF-WHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHH-HHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh-----------
Confidence 334443 3346777777777766666777777888889999999 799999998888777666666655
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHH-HHHHHHHHHHHHHHH
Q 007827 123 GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIV 201 (588)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~i~~ 201 (588)
+|+|+.+..-+++|+..+..+.++.+|+++..|+..++.. -++.. ....+|-.+|.+|+|
T Consensus 457 -------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~------Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 457 -------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATA------QGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred -------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH------HHHHHHHhcccCcchhhhhhh
Confidence 5778889999999999999999999999999985333322 22221 234578888899999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 202 YVQSDVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
.+.+.+|-+..|.+.++.+++.++++...
T Consensus 518 ~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 518 FVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998988888887777666665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0029 Score=70.01 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=59.7
Q ss_pred CccchhHHHHHHHHHHHHhhh-hhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTG-TSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA 100 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~ 100 (588)
.+|.......+..+.+++.+. +..+.+.++ +..|.+... .....+..+...++..++.++.|| +|||+.++.+.+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence 344444445555555555433 444455554 456666544 455556667777788888999999 6999999999999
Q ss_pred HHHHHHHHHHhh
Q 007827 101 SFLGMLVLSLTA 112 (588)
Q Consensus 101 ~~i~~~~~~~~~ 112 (588)
+.++.++++...
T Consensus 369 m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 369 MSICLVILAVVG 380 (513)
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.42 E-value=2.6e-06 Score=92.24 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH-H
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS-L 110 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~-~ 110 (588)
+..+..+..+....+...++.+..+.+.. -.......+...++.+++.++.|| +|||+.++.+..+.+++.+.+. .
T Consensus 260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~ 336 (451)
T PF00083_consen 260 LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGII 336 (451)
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 33333333333333333444456677666 223334445566777788899999 7999999998888776665554 1
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcc-cccccchhhccccCCCCCCCCccchhhhhhHHHHHH
Q 007827 111 TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG-GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 189 (588)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (588)
....+. ++ ++ .+... ++...+...+.+ +..+....+.+|.||++.+ +.+.++.+...
T Consensus 337 ~~~~~~--------~~----~~---~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R------~~~~~~~~~~~ 394 (451)
T PF00083_consen 337 FFLGVS--------SS----SW---WSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKVR------STGIGLSYAVG 394 (451)
T ss_pred cccccc--------cc----cc---ccccc-ceeeeecccccccccccccccccccccccccc------ccccccccccc
Confidence 110000 00 00 01111 112222222222 3445666888999985222 24466666677
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 190 TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 190 ~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
.+++++++.+..++.+..+-...+.+.++..++..++..+..|++
T Consensus 395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 788888888888877766634444454444445554444444543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.003 Score=69.94 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=91.5
Q ss_pred hhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHH
Q 007827 394 IVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 473 (588)
Q Consensus 394 ~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 473 (588)
..++.|++||| ..+.+++++..++-+..+.. .+++.+++.-++.|++..
T Consensus 138 ~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a------------------------~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 138 FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA------------------------PNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred heehHhhcccH-------HHHHHHHHHHHHHHHHHHHh------------------------CcHHHHHHHHHHHHhhcc
Confidence 44568998887 67777777777776666553 577788888899999999
Q ss_pred hHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 007827 474 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 553 (588)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~ 553 (588)
......+.+..|..+++.|+.+..+ ......++.+++....++.. +| ++.+++.....++.
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLF 247 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 77777888888877777654 33 56777777777666
Q ss_pred HHHHHhhhccc
Q 007827 554 FGFFLLCAKWY 564 (588)
Q Consensus 554 ~~~~~~~~~~~ 564 (588)
.+. +++.+|.
T Consensus 248 ~~~-~~l~~Es 257 (521)
T KOG0255|consen 248 LLL-WFLPPES 257 (521)
T ss_pred HHH-HHccCcC
Confidence 555 4444343
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.082 Score=54.63 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007827 459 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 521 (588)
Q Consensus 459 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~ 521 (588)
...+..+.+.+...-..+.....+-++.+|++..|++|.+-+..+++|+---..+...+.|..
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 344445677776666666777888899999999999999998888877766666666666543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00099 Score=70.04 Aligned_cols=179 Identities=11% Similarity=0.003 Sum_probs=113.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhH-----H---HHHHHHHHH-HhhhhhhhhhhccccchhHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATT-----L---INIFSGTTN-FATLLGAFLSDTYFGRYKTL 94 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~-----~---~~~~~~~~~-~~~~~~G~lsDr~~Grr~~l 94 (588)
+.+..+....|..-..+|+...+....++ ..|+.+.+... . ..+...+.. .+-.+..+++|+ +|||++.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 33344444555556677777777766664 45666555444 1 112222222 255667788999 7999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH-HHHhhcccccccchhhccccCCCCCCC
Q 007827 95 GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG-LMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+-+..++++..+.++...+. ..+...+++... .+-++.-+-.++...+-+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~--------------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa---- 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ--------------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA---- 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc--------------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchH----
Confidence 99998888776666554220 001111222222 22234444444566677899963
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHHHHHhc
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-----DVSWAWGLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (588)
|.|+...++..+.+-.|+.++.....++.+ ..+.+..|++.+..++++.+..++.
T Consensus 438 --rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 --RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred --HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 445678888888889999999999999888 6788999999888887777655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.012 Score=53.90 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=80.0
Q ss_pred CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 58 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
++.....-.++......+.+++...+.++ +|.|++++++.+.+++-...... .+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-------------------------~~ 88 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-------------------------PN 88 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-------------------------hh
Confidence 33444455666677778888899999999 79999999998887754333221 35
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 201 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~ 201 (588)
.+.++.+-.+.|++.+..++....++.+..++ +.+++..+++....+.+.++|.++.-
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999998988875532 22234466666666766666655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0097 Score=64.05 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=105.3
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 453 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (588)
++.+.+.++..+..+.++.+ ..|.+ +-++.+.+|.++++++.++....+..
T Consensus 75 ~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~------------------- 125 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV------------------- 125 (488)
T ss_pred HHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 44455677777777776554 33332 22466889999999998888555431
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 533 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~ 533 (588)
.....+++..+.++.|+|.+... ..=.|+++..-.+.|.++++....+..+|.++||.+.+.+... +.++. .|.+.
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L-g~~G~-~i~~~- 201 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL-GEKGF-MILPG- 201 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh-cCCce-EEcCc-
Confidence 11256777888999898865543 3456777776667788888888777778888888766655432 21111 23331
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 534 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 534 ~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
..=+.+...-|+.+++.++..++.+++.+|......
T Consensus 202 ~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~ 237 (488)
T KOG2325|consen 202 LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII 237 (488)
T ss_pred ceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence 111235556778888888888888888887755443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0011 Score=70.78 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc--
Q 007827 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-- 489 (588)
Q Consensus 412 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~-- 489 (588)
+.+.+|.++++++.++++... ......+.+++++..+|.++.-++...++.|++|+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 678889999999988887621 02344666778888899999999999999999874
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 490 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 490 ~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
..|..+.+++.++-++|+.+++.+.+.+.+.. ++...|...++-...+.+.++++.|+.+....
T Consensus 151 prrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred cccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 22677888888899999999999999987653 45677888888888888888888887776654
Q ss_pred CC
Q 007827 570 GD 571 (588)
Q Consensus 570 ~~ 571 (588)
.+
T Consensus 215 ~~ 216 (498)
T COG3104 215 VP 216 (498)
T ss_pred CC
Confidence 43
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0061 Score=49.35 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=59.9
Q ss_pred hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 007827 40 TTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 112 (588)
Q Consensus 40 ~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~ 112 (588)
.+.+.+.+| .+.++.++|.++++++.+...+++.+|++.+.++.++ ..+++.+..++++..+....+++..
T Consensus 8 RFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 8 RFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555 5567899999999999999999999999999999999 5888889898888888888888763
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=61.95 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=92.0
Q ss_pred hcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchh-HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 54 IFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 54 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
..|.+...+|.+.....+++++++.++|.+.||. ..-| ++++......++. ++.....+-
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~-~~l~~~t~~----------------- 355 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGT-LMLLTCTLF----------------- 355 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH-HHHHHhhcc-----------------
Confidence 4567778899999999999999999999999994 4333 3333333333332 111111100
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccccc----
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---- 208 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g---- 208 (588)
....+.++..-.++|.+.-+..|.-.-+..|...+..++.. .|+.....++-+++=..+.+...+..+
T Consensus 356 --~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tS------sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~ 427 (480)
T KOG2563|consen 356 --LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTS------SGLLNLSGQIFGVILVFIMGILAEDLGPPGN 427 (480)
T ss_pred --CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccc------ceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence 02334566666777888888888877777776654333322 344444455555555566666666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccceeec
Q 007827 209 WAWGLGIPAFMMFLSCAMFFLGSRLYAK 236 (588)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
+...-+......++.+++..+.++++++
T Consensus 428 ~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 428 TFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 4433333444444555555666666543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=65.37 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=76.6
Q ss_pred CCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 450 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 450 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
...+...+.+|.++++.+.+.+|.+......++.++++|++||+..++++.+..++|+.+...+...-..
T Consensus 557 ~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~---------- 626 (654)
T TIGR00926 557 LVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENF---------- 626 (654)
T ss_pred ecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------
Confidence 3446778999999999999999999999999999999999999999999999999999999887754321
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.....-|..++++.++..+++....+
T Consensus 627 -------~~~~~~~~~~~~~~~~~~~~f~~~a~ 652 (654)
T TIGR00926 627 -------SVQAAEFFLFASLMLVVMAIFSILAY 652 (654)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12335566666666666666555543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=50.71 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=66.9
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHh
Q 007827 397 RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 476 (588)
Q Consensus 397 ~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 476 (588)
+.|+.+ +...+.+|.+...+++.+.....+ +...+.+.|.+.....+.+.+.....
T Consensus 59 l~d~~g-------p~~~l~iG~~~~~~GY~~~~l~~~-----------------~~i~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 59 LYDRFG-------PWVVLLIGAVLGFVGYGLLWLAVS-----------------GRIPSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred HHHhcc-------hHHHHHHHHHHHHHHHHHHHHHHh-----------------CccCccchHHHHHHHHHHcccHHHhh
Confidence 467654 346778888888888766654321 11223566666666666666766666
Q ss_pred hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 477 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
+....-..+-+|. .||++.|+.....++++.+-+.+.-.+..
T Consensus 115 ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 115 TASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred hHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 6655555578886 69999999999999998888877766653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.042 Score=58.02 Aligned_cols=125 Identities=16% Similarity=0.090 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc-
Q 007827 412 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN- 490 (588)
Q Consensus 412 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~- 490 (588)
+.+.+|.++..+|.+++..... +... ..+.+...+.+++.+.++|.++.-|+...+..|+++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~------~~~~---------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI------PPSL---------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT------SSSC---------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHh------cchh---------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4566778888888777554321 0000 01234557778888999999999999999999999865
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 491 --MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 491 --~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
.|..+...+..+.++|..++..+.+++.+.. ++...|.+.++..+++.+.++...++++.+
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 5677778889999999999999888887532 556788888888888888877776666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.27 Score=54.39 Aligned_cols=161 Identities=10% Similarity=0.001 Sum_probs=85.7
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH---HHHHHHh
Q 007827 35 FEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG---MLVLSLT 111 (588)
Q Consensus 35 ~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~---~~~~~~~ 111 (588)
...++.-..-....-.+...+|-+....+.+++++..+..+|..++|+++++ .-|+.. .+-+.+..++ ..++...
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~-~~e~~i~l~~~~~~~ll~~~ 102 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFV-AVELLLALLGGLSALILYAA 102 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555556689999999999999999999999999988755 233322 2211111111 1111111
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.... ......++...++.++..|+..|...-+..+.. . +..+...+-.|....+
T Consensus 103 ~~~~-------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~----~---~~~g~~~g~ly~~ntl 156 (521)
T PRK03612 103 FAFQ-------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR----D---QHLGHNVATVLAADYL 156 (521)
T ss_pred HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c---cchhhhhhhhHhHHhH
Confidence 1000 001112233344556777776665544443311 1 0112346677788899
Q ss_pred HHHHHHHHHHHhc-cccchh-hHHHHHHHHHHHH
Q 007827 192 AMMISLTVIVYVQ-SDVSWA-WGLGIPAFMMFLS 223 (588)
Q Consensus 192 g~~i~~~i~~~~~-~~~g~~-~~~~~~~~~~~~~ 223 (588)
|+++|.++.+++. ...|-. ..+.+..+..+++
T Consensus 157 Ga~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 157 GALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999988654 356744 4443333333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0016 Score=72.08 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=2.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 454 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 454 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
....+..++++.++.|+|.....+...+|+.|.++++..+.+.|+......+|..+|-.+++.+.+
T Consensus 137 ~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 137 LSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---------------SSS------------------------------------------------
T ss_pred chHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 334556778889999999999999999999999999999999999999999999999888876654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.23 Score=53.96 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 007827 471 SEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALG 550 (588)
Q Consensus 471 ~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~ 550 (588)
+.+......++++++....+.|....|+.+.+...+..+++.+.+...... ++..+|.+.++..
T Consensus 125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~----------------~~a~~f~ia~~~~ 188 (463)
T KOG2816|consen 125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL----------------GIALVFLIAAASG 188 (463)
T ss_pred chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------------CchHHHHHHHHHH
Confidence 345566677899999999999999999999999999999999998887543 5567888888888
Q ss_pred HHHHHHHHhhhccccccCC
Q 007827 551 LLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~ 569 (588)
++..+..+++.+|...++.
T Consensus 189 ~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 189 ILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred HHHHHHHhhccccccCccc
Confidence 8888888888887654433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.15 Score=57.63 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---------CCC
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG---------AST 526 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~---------~~~ 526 (588)
..+..++.+.++.|+|.-...+...+|+.|-+.++.-..+.|+.+....+|-++|-.+++.......+ +.+
T Consensus 235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~D 314 (735)
T KOG3626|consen 235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTD 314 (735)
T ss_pred hhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCC
Confidence 35557778899999999999999999999999999999999999999999999999888877654322 233
Q ss_pred CCCCCCCCccchhHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 007827 527 GDWLPEDLNKGRLDYF-YYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 527 ~~~~~~~~~~~~~~~~-f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
..|+ +-.|. |++.+.+.++..+.++++-++.+
T Consensus 315 PrWI-------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 315 PRWI-------GAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred cchh-------hHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 3444 33443 55566666666555555544443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.8 Score=44.88 Aligned_cols=140 Identities=14% Similarity=-0.003 Sum_probs=78.3
Q ss_pred hhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 007827 378 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 457 (588)
Q Consensus 378 ~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (588)
......++++++.+ .+.||.||| +...+.-++.+++.+..- ..+
T Consensus 77 ~Gf~Ss~i~g~~~G----~laD~~Grk-------~~cl~~cily~~scl~k~-------------------------~~~ 120 (354)
T PF05631_consen 77 AGFASSAIFGTFVG----SLADRYGRK-------KACLLFCILYSLSCLTKH-------------------------SSN 120 (354)
T ss_pred HHHHHHHHHHHHHH----HHHHhcCch-------HHHHHHHHHHHHHHHHHh-------------------------ccc
Confidence 33444556666644 459999987 344444344444433211 245
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhh-----hhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 007827 458 GLWLIPQLSLIGFSEAFTIIAEVE-----FYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLP 531 (588)
Q Consensus 458 ~~~~i~~~~l~~~~~~~~~~~~~~-----~~~~~~P~~~rg~~~~~~~-~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~ 531 (588)
...+++.=++.|++..+.+..-=+ .-..-+|++..+...+... ..+.+-.++++.+...+.+..+.
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~-------- 192 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF-------- 192 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC--------
Confidence 667777778888877665554222 2223466666666555554 44555666666666665554321
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 532 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 532 ~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
+..+.|.....+.+++.++.....+|..+.
T Consensus 193 ------g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 193 ------GPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 123566666666666666666566555443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.41 Score=43.80 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 517 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l 517 (588)
.+.+.++++.++.|++.++.++..-.++.+...++.+++..+++......+..+|....-.+
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999888888888766544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.98 Score=45.62 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 518 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~ 518 (588)
+++.+++..+.-|+--+......+--+.++.+++.|..+|+...+.-.+|..+.+++.-.++
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 44444444444455444455555666778888889999999998888888888777765554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.22 Score=53.80 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccC--
Q 007827 410 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-- 487 (588)
Q Consensus 410 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-- 487 (588)
++..+.++.++..++...++.... ...+.......+++..+|..+.....-+++.|..
T Consensus 58 r~~Y~~i~~~~~~~~~~~~~~~~~--------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~ 117 (433)
T PF03092_consen 58 RKPYMIIGWLLGAVSALVLALLPA--------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARR 117 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc--------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 336677777777666555554321 1123334455566777888888888777777775
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007827 488 -PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 563 (588)
Q Consensus 488 -P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~ 563 (588)
|.+ ||..++.......+|+.++..+.|.+.+.. +++..|.+.+.+.++..+..++...|
T Consensus 118 ~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 118 EPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred CCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 555 888899999999999999999998876543 33456677776766666666666655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.38 E-value=1 Score=48.56 Aligned_cols=83 Identities=10% Similarity=-0.055 Sum_probs=44.1
Q ss_pred hhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 482 FYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 482 ~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+......++.++-+.-....+..+|-+++..+.-.+.+..=-...-...|.+.---....+..+.+.+.++..+.+.++.
T Consensus 142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k 221 (544)
T PF13000_consen 142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFK 221 (544)
T ss_pred hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEe
Confidence 33345556667777777777777777777766665543200000001122221112344455566666666666666666
Q ss_pred ccc
Q 007827 562 KWY 564 (588)
Q Consensus 562 ~~~ 564 (588)
+|.
T Consensus 222 ~E~ 224 (544)
T PF13000_consen 222 KEK 224 (544)
T ss_pred ecc
Confidence 654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.39 Score=51.07 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=78.6
Q ss_pred hhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 007827 377 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 456 (588)
Q Consensus 377 ~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (588)
...++.-++..|+.+....+.-.|+|||+ .-+..+..+.+++++++++..+.......+.. ..+...
T Consensus 74 ~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~-------~~~~~r 140 (498)
T KOG0637|consen 74 LCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLLLGDNER-------KPVKPR 140 (498)
T ss_pred cccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc-------cccchH
Confidence 34466666777777776444455555553 45666777788888888876543333221111 112223
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSI-GGSLAFVGFAISNYLNGFLISM 516 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~-~~~~~~~~~~ig~~l~~~~~~~ 516 (588)
.....++.+-+.=+..-....+.=++..+.+-+..+-+ +.+.+....++||.+|-.+.++
T Consensus 141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 33444555555555655666777788888876555555 9999988889999888776653
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.08 E-value=3 Score=44.89 Aligned_cols=137 Identities=9% Similarity=0.045 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007827 42 GTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 121 (588)
Q Consensus 42 ~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (588)
+....+..|++.. |+|+...|.+-+...+....+..+..++.+| +|..|+-++++..-.+...++..+...|.
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~----- 348 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG----- 348 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4456788898766 9999999999999999999999999999999 69999988888876666555554433221
Q ss_pred CCCCCCCCCCCC-CchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 007827 122 CGNQDSGACPGP-TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 200 (588)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~ 200 (588)
.+ +..+...++.+..+-=+|.-++--+..-++.|..|+ ..|+...+......++--.+...++
T Consensus 349 ----------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~------~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 349 ----------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE------SERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH------HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01 223455555555555567666666677777787753 2234567777777777777665554
Q ss_pred H
Q 007827 201 V 201 (588)
Q Consensus 201 ~ 201 (588)
-
T Consensus 413 i 413 (432)
T PF06963_consen 413 I 413 (432)
T ss_pred h
Confidence 3
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.65 E-value=14 Score=40.44 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=68.4
Q ss_pred CchhhhHHHHHHHH-HHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh--ccccCCC-CCCCCCCCCCCCCC
Q 007827 58 KSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA--AISKLHP-PDCGNQDSGACPGP 133 (588)
Q Consensus 58 s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 133 (588)
++.....+-....+ +..+...+-.+++|+ ++|.+++.+....+.....+.++.- .-..+|+ +.|+..+...-++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~ 134 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGF 134 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchH
Confidence 33444444443333 445667778999999 6999988877666655544444321 1111121 11111111100000
Q ss_pred Cc-------hhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 007827 134 TP-------WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 205 (588)
Q Consensus 134 ~~-------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~ 205 (588)
.. ++...+++.-=+.| .-...-.-..+..|.++. ++. .+.++.+..+.|+|..++..+..++.+
T Consensus 135 ~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~fAN~itt~--~eA----KRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 135 KGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWGFANEITTV--EEA----KRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111111111111 111111235555666643 112 257999999999999999888887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.55 E-value=7.2 Score=42.19 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHHhhhhhhhhh---hccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007827 70 SGTTNFATLLGAFLS---DTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG 146 (588)
Q Consensus 70 ~~~~~~~~~~~G~ls---Dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (588)
.++..++..+.+.++ ++ +||++++.++.++..++.++..+.. |.-. | -+||-..+-....+....++.-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~da-p---~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDA-P---LRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccC-C---CCCCcccccccccchhHHHHHHH
Confidence 334444445555554 66 6899999988888777766655542 1100 0 11233333333345666777788
Q ss_pred HHHhhcccccccchhhccccCCC
Q 007827 147 LMVIGAGGIRPCNLAFGADQFNP 169 (588)
Q Consensus 147 l~g~~~g~~~~~~~~~~~~~~~~ 169 (588)
++|++-++..+..+.++++.+|+
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~~ 384 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYPD 384 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999953
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=87.26 E-value=29 Score=37.01 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007827 456 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 520 (588)
Q Consensus 456 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~ 520 (588)
.+..++-+.-++.|++... -.+-++|++..+|++.--++++....+.-+|..++..++..+...
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666777766544 556678999999999999999999888889999999888877653
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=86.67 E-value=53 Score=35.85 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHh-hhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007827 464 QLSLIGFSEAFTI-IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 519 (588)
Q Consensus 464 ~~~l~~~~~~~~~-~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~ 519 (588)
-++...+...... -.-|.+..|.+..+...+..++.....++|..+++.+...+..
T Consensus 134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333 3678999999999999999999999999999999998887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.78 E-value=58 Score=34.60 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007827 457 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 513 (588)
Q Consensus 457 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~ 513 (588)
+-+|.+....++|++.+-.......+..+.+|++.+..+..+....-..|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446777788888999888888888999999999988887777666555555555543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.68 E-value=11 Score=38.56 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
..++..+..|.-..++......++| +.+ ...........+++.+.+..+ +|-|+++.++...+.. ..+
T Consensus 36 ~~fl~~f~a~~gl~nlq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~l-----yiA 103 (390)
T KOG3097|consen 36 IAFLLTFTAYLGLQNLQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYAL-----YIA 103 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH-----HHH
Confidence 3344444444445555555543333 221 122334444556666688888 7999998776544432 222
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhcccc
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 166 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 166 (588)
.... ..+..++..-...|++.+..+....+|++++
T Consensus 104 ~Nl~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 104 ANLE--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred hhcc--------------------hhHHhhccHHHhhccccccccccCcceecHH
Confidence 2111 3456677888888999999988777777654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.10 E-value=5.7 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 539 LDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 539 ~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
...+.++.+.+..++..+..++.+|....
T Consensus 214 L~gy~~fwg~~~~vat~Lv~~~kke~~~~ 242 (510)
T KOG3574|consen 214 LAGYLWFWGALFIVATTLVALLKKENDES 242 (510)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 45567777778888877777776555444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.43 E-value=18 Score=35.18 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhccCCc-chHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 007827 458 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFV-GFAISNYLNGFLISMVHR 519 (588)
Q Consensus 458 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~-~~rg~~~~~~~~-~~~ig~~l~~~~~~~l~~ 519 (588)
.+.++......+++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555557888888888999999999998 678888888877 577777888766665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 588 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-17 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-114
Identities = 109/558 (19%), Positives = 213/558 (38%), Gaps = 62/558 (11%)
Query: 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIF------NMKSITATTLINIFSGTTNFAT 77
+ +P++I +E E+ G + L +L T ++ A + + F F
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 78 LLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137
LLG +++D +FG+Y T+ + S+ +G L++
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-----------------------S 108
Query: 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 197
+ +TGL L+ +G+GGI+P +F DQF+ + +S Q F+ +YFT F +
Sbjct: 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGSFFAS 165
Query: 198 TVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 257
+ + + A GIP +MF++ F+LG + Y + PE + V +A+
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225
Query: 258 RHLKLPEEPWLT-LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPED-QIKSDGSAINPWR 315
+ + L + +P G L A ++ + +
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285
Query: 316 LSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 375
V+ V+ ++R++ ++A ++ + Q + LQ++ V A
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWS--LFDQKASTW-ILQANDMVK--PQWFEPAMM 340
Query: 376 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKR 435
+ L + + IP + ++ P ++R+ K +T L++M G+ + + I+ G I
Sbjct: 341 QALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTI---- 393
Query: 436 RSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIG 495
+ S+LS W I +L+ F E +EF Y Q P+ M+
Sbjct: 394 -----------QLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442
Query: 496 GSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFG 555
S + + N V T + ++ F++ A +L
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSV---KSPTVTEQIVQTGMSVTAFQMFFF--AGFAILAAI 497
Query: 556 FFLLCAKWYKYKGSGDGA 573
F L A+ Y+ + A
Sbjct: 498 VFALYARSYQMQDHYRQA 515
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 82/511 (16%), Positives = 178/511 (34%), Gaps = 95/511 (18%)
Query: 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTI-----FNMKSITATTLINIFSGTTNFATL 78
+ + E +E+ G + LL Y+ + ++ TA +++ I++ +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 79 LGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 138
+G F++D G + + V LG +VL+L P+
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------------------------PFGA 108
Query: 139 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLT 198
+ LF + L++IG G ++P ++ + G F+ + F I+
Sbjct: 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAPL 164
Query: 199 VIVYVQSDVSWAWGLGIPAF------MMFLSCAMFFLGSRLYAKVKP----EGSPLASTV 248
++ Q + + A +++ L P E PL V
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224
Query: 249 QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDG 308
+ VA + + L N +P ++T +
Sbjct: 225 SLAVAGF----IAIIVVMNLVGWNSLP-----------------AYINLLTI---VAIAI 260
Query: 309 SAINPWRLSSMQKV--EEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 366
+ S KV E ++ IP++ +A++++ ++Q VV A + RV ++
Sbjct: 261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAI--EEQGSVVL-ATFAAERVDSS 317
Query: 367 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 426
F P + + + ++I +Y K + + + A+G++ A + +
Sbjct: 318 WF--PVSWFQSLN----PLFIMLYTPFFAWLWTAWKKNQ--PSSPTKFAVGLMFAGLSFL 369
Query: 427 ISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ 486
+ +A+ + G +S LWL+ +L+ E + K
Sbjct: 370 L----------MAIPGALY-----GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414
Query: 487 FPENMRSIGGSLAFVGFAISNYLNGFLISMV 517
P+ S S+ F+ ++ + LN L+++
Sbjct: 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 69/444 (15%), Positives = 126/444 (28%), Gaps = 153/444 (34%)
Query: 47 LLVYLTTIFNMKSITA-----TTLINIFSGTTNFATLLGAFLSDTY-----------FGR 90
LLV L + N K+ A L+ TT F + + T
Sbjct: 247 LLV-LLNVQNAKAWNAFNLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 91 YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 150
+ + +L L + +P L +I
Sbjct: 301 DEVKSL--LLKYLDCRPQDLPREVLTTNP-------------------------RRLSII 333
Query: 151 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSW 209
S + G+ ++ NW + +I ++ V
Sbjct: 334 AE--------------------SIRDGLATWDNWKHVNCDKLTTIIESSLNV-------- 365
Query: 210 AWGLGIPAFM--MFLSCAMF---------FLGSRLYAKVKPEGSPLASTVQVFVAAIKKR 258
L PA MF ++F L S ++ V V V V + K
Sbjct: 366 ---LE-PAEYRKMFDRLSVFPPSAHIPTILL-SLIWFDVIKS------DVMVVVNKLHKY 414
Query: 259 HL--KLPEEPWLTLHN---HIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINP 313
L K P+E +++ + + N H +D I D + P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHR---SIVDHYNI-----PKTFDSDDLIP 466
Query: 314 WRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQ-QTYVVFQALQSDRRVGNTHF---K 369
L + S I +++ ++ + +F+ + D R F K
Sbjct: 467 PYLDQY---------------FYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQK 506
Query: 370 IPAASYAIF---SMLGLTIWIPIYDRIIV---PRLQRLTKKEGGITILQRMAIGMILAIF 423
I S A S+L + Y I P+ +RL + L ++ +I + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEENLICSKY 564
Query: 424 TMII--------SGIIEDKRRSLA 439
T ++ I E+ + +
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.31 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.24 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.08 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.04 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.79 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.62 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.36 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=277.03 Aligned_cols=446 Identities=16% Similarity=0.257 Sum_probs=291.1
Q ss_pred cCCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHh-----cCCCchhhhHHHHHHHHHHHHhhhhhhhhhhc-cccchhH
Q 007827 20 YRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTI-----FNMKSITATTLINIFSGTTNFATLLGAFLSDT-YFGRYKT 93 (588)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grr~~ 93 (588)
++++|..+.+....++..+++|++..+++.|+++. +|+|..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34556777888888999999999999999999988 99999999999999999999999999999999 5 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+..+.++..++.+++.++ .+.+.++++|+++|++.+...++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---- 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE---- 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----
T ss_pred HHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc----
Confidence 999999999888887765 3466789999999999999999999999999964
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccC---CCC-ChhhhHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK---PEG-SPLASTVQ 249 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 249 (588)
+++.++.++++++...++|..++|.+++++.+..||++.|++.++..++++++..+..+++.+++ +++ .+.++..+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 23345677888999999999999999999999899999999987776666665554433322111 111 11111111
Q ss_pred HHHH-------------HHHhhccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCcccc
Q 007827 250 VFVA-------------AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL 316 (588)
Q Consensus 250 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (588)
.... .....+ ..+.. +.........+....... ...|+.
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~------~~~~~~ 271 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVG--WNSLP--------------------AYINLLTIVAIAIPVFYF------AWMISS 271 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHS--SCCTT--------------------HHHHHHHHHHHHHHHHHH------HHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--Ccccc--------------------cchhhhhHHHHHHHHHHH------HHHhhc
Confidence 1000 000000 00000 000000000000000000 000000
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHhcccceeeeeccc-cccccCCccccccchhhhhhhhHHHHHHHhhhhhhhh
Q 007827 317 SSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ-SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIV 395 (588)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 395 (588)
.. ....++++......+++....++..+.+....+..+... ...+. .........+.+..++..++.+++
T Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l-- 342 (491)
T 4aps_A 272 VK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFAWL-- 342 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHHHH--
T ss_pred cc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc------cCHHHHhccchHHHHHHHHHHHHH--
Confidence 00 001123333334444555555666666555543322211 11111 234455666677777777776554
Q ss_pred HhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhH
Q 007827 396 PRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 475 (588)
Q Consensus 396 ~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 475 (588)
.||++||+ ......+..+.++.++++++........ + .....+.++.+..+++.+++.+..
T Consensus 343 --~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 343 --WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G--------TSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp --HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-------C--------CCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred --HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C--------CCCCccHHHHHHHHHHHHHHHHHH
Confidence 88888774 4455667788888888877666542110 0 012246667778888999999999
Q ss_pred hhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 007827 476 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFG 555 (588)
Q Consensus 476 ~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~ 555 (588)
.+..+.++.|.+|++.||+++|+.++...+|..+++.+.+.+.+. ++.+.|.+.+++.++..+
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877542 234678888888888877
Q ss_pred HHHhhhcccccc
Q 007827 556 FFLLCAKWYKYK 567 (588)
Q Consensus 556 ~~~~~~~~~~~~ 567 (588)
+.+++.++.+++
T Consensus 467 ~~~~~~~~~~~~ 478 (491)
T 4aps_A 467 VLVFLSKRIQGL 478 (491)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=279.51 Aligned_cols=489 Identities=21% Similarity=0.323 Sum_probs=282.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcC------CCchhhhHHHHHHHHHHHHhhhhhhhhhhccc-cchhH
Q 007827 21 RGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFN------MKSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKT 93 (588)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~ 93 (588)
+++|..+.+.+..++..+++|++..+++.|+++++| +|..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 345666777888899999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCC
Q 007827 94 LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES 173 (588)
Q Consensus 94 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 173 (588)
+.++.++.+++.+++.++. .+.+.++++|++.|++.+...++..+++.|.+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--- 141 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS--- 141 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT---
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc---
Confidence 9999999988888877752 15678899999999999999999999999999743
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHH
Q 007827 174 GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVA 253 (588)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
++......+++++.+.++|.+++|.+++++.+..||++.|++.++..++++++.++..++..++++++++..+..+.+..
T Consensus 142 ~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 142 NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 22223456777889999999999999999998899999999888776666665555444433222222111111111111
Q ss_pred HHHhhccCCCCCCccccccCC-CcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccc-------cchhhHHHHH
Q 007827 254 AIKKRHLKLPEEPWLTLHNHI-PKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWR-------LSSMQKVEEV 325 (588)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 325 (588)
..++++... +........ ............+................+. ....+|+ .+.....+++
T Consensus 222 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 295 (524)
T 2xut_A 222 ALLTKVEGK---GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF---VGAGASLQLERARKSHPDAAVDGV 295 (524)
T ss_dssp -----CTTH---HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH---HHTGGGTHHHHSCCSCCSSSSTTT
T ss_pred HHhhhhccc---Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc---cccchhhHHhhhhccccHhHHHHH
Confidence 111110000 000000000 0000000000000000000000000000000 0001110 0000011123
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCC
Q 007827 326 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 405 (588)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~ 405 (588)
++......+++....++..+.+....+..+....+... + .+...+...+.++.++..++.+++..+..+|.++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (524)
T 2xut_A 296 RSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK- 369 (524)
T ss_dssp TTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC-
Confidence 33333344444444455555554443333322221110 0 13455666777788888888888765665665443
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhc
Q 007827 406 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYK 485 (588)
Q Consensus 406 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 485 (588)
.+..+.+.+|+++.++++++....... .+.....+.+++++.+++.+++++...+..++++.|
T Consensus 370 --~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 432 (524)
T 2xut_A 370 --LTALRKMGAGIAITGLSWIVVGTIQLM---------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432 (524)
T ss_dssp ---CCHHHHHTHHHHHHHHHHTTTTTTTT---------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776655442100 000112455677778899999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007827 486 QFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 565 (588)
Q Consensus 486 ~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~ 565 (588)
.+|++.||+++|++++..++|+.+++.+.+.+.+..+ .+|.+.+ +.+.....|++.+++.+++.++++++.++++
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQT-GMSVTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccc-cccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998865321 0121100 0001122377788888888777777777666
Q ss_pred ccCCC
Q 007827 566 YKGSG 570 (588)
Q Consensus 566 ~~~~~ 570 (588)
++..+
T Consensus 508 ~~~~~ 512 (524)
T 2xut_A 508 MQDHY 512 (524)
T ss_dssp -----
T ss_pred cchhh
Confidence 55443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=243.95 Aligned_cols=396 Identities=12% Similarity=-0.015 Sum_probs=247.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 23 WKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
++....+.+..+...+..+.+...++.+. +++ .+..+.+++.+++.++..+++++.|+++|| +|||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 34444555555666666666666666554 567 999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHH----hhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccch
Q 007827 103 LGMLVLSL----TAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 178 (588)
Q Consensus 103 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (588)
++.+++++ + .+++.++++|+++|++.+...++..+++.|.+|+ +.+
T Consensus 104 ~~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KER 153 (451)
T ss_dssp HHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THH
T ss_pred HHHHHHHhhhhcc------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhh
Confidence 99988887 5 3466789999999999999999999999999963 223
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHh
Q 007827 179 TSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 257 (588)
Q Consensus 179 ~~~~~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
+..+++.+.+.++|.+++|.+++++.+..| ||+.|++.++..++..++.++..++.++.....+. +
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 220 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------ 220 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence 567888999999999999999999888888 99999998877666555444433332111100000 0
Q ss_pred hccCCCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhh-hhHHH
Q 007827 258 RHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWA 336 (588)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 336 (588)
+ . +.+.+.+...+. .....++..........+.+... +...+
T Consensus 221 ------~-~-----~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 221 ------E-Y-----KNDYPDDYNEKA-------------------------EQELTAKQIFMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp ------T-T-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ------h-h-----cccccccchhhh-------------------------hcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 0 0 000000000000 00000000000000001111111 11111
Q ss_pred HHHHHHHHHhcccceeeeeccccccccCCccccccc---hhhhhhhhHHHHHHHhhhhhhhhHhhhhh--ccCCCCCChH
Q 007827 337 SAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPA---ASYAIFSMLGLTIWIPIYDRIIVPRLQRL--TKKEGGITIL 411 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~~~~~l~~~~~~~~~~~~--~~k~~~~~~~ 411 (588)
....+.......+.+ .....| .+. ........++.+++..+..+ +.||+ ++|
T Consensus 264 ~~~~~~~~~~~~~~~-------~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~------- 320 (451)
T 1pw4_A 264 VYLLRYGILDWSPTY-------LKEVKH-----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNR------- 320 (451)
T ss_dssp HHHHHHHHHHHHHHH-------BTTBSC-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCH-------
T ss_pred HHHHHHHHHHHHHHH-------HHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCc-------
Confidence 111122222211111 122222 122 22333334444445454433 47776 443
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcc
Q 007827 412 QRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 490 (588)
Q Consensus 412 ~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~ 490 (588)
+.+.++.++.. +++++.... ...+.+......++.+++.....+....++.|.+|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMN----------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC----------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHh----------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh
Confidence 34444444433 444433321 1124455666677778877778888889999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007827 491 MRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 562 (588)
Q Consensus 491 ~rg~~~~~~~~~~~i-g~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~ 562 (588)
.|++++|+.+....+ |..+++.+.+.+.+.. ++...|++.+++.+++.+..+...+
T Consensus 379 ~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 379 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999988753 3457788888888777766665544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=245.57 Aligned_cols=422 Identities=13% Similarity=0.066 Sum_probs=225.4
Q ss_pred CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchh
Q 007827 58 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 137 (588)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (588)
+..+.+++.+.+.++..++++++|+++|| +|||++++++.+++.++.++++++.......... ..-.-....+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~------~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch------hHHHHHHhhh
Confidence 34567889999999999999999999999 6999999999999999998887532100000000 0000000146
Q ss_pred HHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhccc--------cch
Q 007827 138 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------VSW 209 (588)
Q Consensus 138 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~~~~--------~g~ 209 (588)
++.++++|+++|++.|+..+..+.+++|..|+ +.|+...+..+.+..+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 88899999999999999999999999999863 2234566777778888888887777655432 346
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--cceeeccCCCCChhhhHHHHHHHHHHhhccCCCCCCccccccCCCcccccCCCCCCC
Q 007827 210 AWGLGIPAFMMFLSCAMFFLG--SRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 287 (588)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (588)
++.+.+..+..++.++..+.. .|++...+.+.++.. +.+.+...+...... ..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~---~~l~~~~~~~~~~~~------~~---------------- 254 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAE---GILRKIMGNTLATQA------VQ---------------- 254 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHH---HHHHHHHHHHHHHHH------HH----------------
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHH---HhHHHhcCCchhHHH------HH----------------
Confidence 666665555444333332221 122211222221211 111111111000000 00
Q ss_pred ccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHH-hhhhhHHHHHHHHHHHHhcccceeeeeccccccccCCc
Q 007827 288 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVL-IRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 366 (588)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (588)
+....... ++ . ... .......++. .........+. ........+........+
T Consensus 255 -----~~~~~~~~----~~--~--~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-- 308 (491)
T 4gc0_A 255 -----EIKHSLDH----GR--K--TGG----RLLMFGVGVIVIGVMLSIFQQF-------VGINVVLYYAPEVFKTLG-- 308 (491)
T ss_dssp -----HHHHHHHH----HH--H--HTT----HHHHSCCTHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHSS--
T ss_pred -----HHHHHHHh----hh--h--hhh----HHHHhcccHHHHHHHHHHHHHH-------hhhhHHHhcchHHHHhcC--
Confidence 00000000 00 0 000 0000001111 11110000000 000011111111111111
Q ss_pred cccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc
Q 007827 367 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 446 (588)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (588)
..............+..++...+ ...+.||+||| +.+..+...+.++++.++....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~------------- 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY------------- 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHh-------------
Confidence 00000111112222222233333 33458888877 4556666666666665554321
Q ss_pred cccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 007827 447 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 526 (588)
Q Consensus 447 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~~~~~~ig~~l~~~~~~~l~~~~~~~~~ 526 (588)
........++..++..........+..+.+..|.+|++.|++++|+.+..+++++.+++.+.|.+.+......
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~- 437 (491)
T 4gc0_A 365 ------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA- 437 (491)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-
T ss_pred ------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0112222222222222223334556778899999999999999999999999999999999887754310000
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchhhhccCCC
Q 007827 527 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNP 583 (588)
Q Consensus 527 ~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
..+..+.|++++++++++.++.+++.||+|+|++||.++..+++.+++
T Consensus 438 ---------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 438 ---------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp ---------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred ---------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 002235788899999999999999999999999998777666554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=230.08 Aligned_cols=178 Identities=11% Similarity=0.025 Sum_probs=138.6
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHH
Q 007827 22 GWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 101 (588)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~ 101 (588)
+++....+....+...+........+| ++++++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHH
Confidence 344444444455555555554444554 4678999999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 102 FLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
+++.+++..... ..+++.++++|++.|++.+...+...+++.|.+|+ +.++..
T Consensus 102 ~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~ 154 (438)
T 3o7q_A 102 ALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSGHFR 154 (438)
T ss_dssp HHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTHHHH
T ss_pred HHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhHHHH
Confidence 998888733211 04678899999999999999999999999999964 223456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccc-------------------------hhhHHHHHHHHHHHHHHHHH
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQ-SDVS-------------------------WAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~ 228 (588)
.++.+.+.++|..++|.+++++. +..+ ||+.|++.++..++..++.+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999887 5554 99999776665544444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=208.70 Aligned_cols=164 Identities=11% Similarity=0.060 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 007827 29 VIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL 108 (588)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~ 108 (588)
+....+...+....+.+.++.+ .+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHH
Confidence 3445555556655566666655 57899999999999999999999999999999999 699999999999999988888
Q ss_pred HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHH
Q 007827 109 SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 188 (588)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (588)
.++ .+.+.++++|++.|++.+...+...+++.|.+|+++ ++..++..+..
T Consensus 83 ~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTT------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG 132 (375)
T ss_dssp HHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred HHh------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 776 467889999999999999999999999999997422 23458888889
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 007827 189 FTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224 (588)
Q Consensus 189 ~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (588)
.++|..++|.+++++.+.+||++.|++.++..++..
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999999999999988899999988776554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=213.44 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=214.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 007827 25 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLG 104 (588)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~ 104 (588)
..+.+....+....++..+.++++.|+++++|+|+.+.|++.+.+.++..++++++|+++|| +||||+++++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 34444444455556666677899999998999999999999999999999999999999999 69999999887776543
Q ss_pred HHHH---HHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhh
Q 007827 105 MLVL---SLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 181 (588)
Q Consensus 105 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (588)
.... ..... ....++.++.+.+++.+...+...+...+..++ . .+.++..
T Consensus 87 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~--~~~~~~~ 139 (417)
T 2cfq_A 87 FAPFFIFIFGPL-----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--V--SRRSNFE 139 (417)
T ss_dssp HHHHHHHTHHHH-----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--H--HHHHTCC
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--h--hhhcccc
Confidence 2211 11110 000123344444444444333333333333321 0 1122334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccC
Q 007827 182 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLK 261 (588)
Q Consensus 182 ~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (588)
++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+...|+ +++..+ .
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~-~---------------- 197 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT-V---------------- 197 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC-S----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc-c----------------
Confidence 555555678899999999998876 579999887655433222221111111 100000 0
Q ss_pred CCCCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhH-HHHHHH
Q 007827 262 LPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIV 340 (588)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 340 (588)
++ ... .++ ..... ..++ +....+........ ......
T Consensus 198 -~~-----------~~~-~~~--~~~~~----------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 198 -AN-----------AVG-ANH--SAFSL----------------------KLAL-----ELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp -SS-----------SSS-SCC--CCCCH----------------------HHHH-----HHTTCHHHHHHHHHHHHHHHH
T ss_pred -cc-----------ccc-ccc--ccccH----------------------HHHH-----HHhcCCchhhHHHHHHHHHHH
Confidence 00 000 000 00000 0000 00001111111111 111111
Q ss_pred HHHHHhcccceeeeeccccccc-cCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHH
Q 007827 341 YYVALVQQQTYVVFQALQSDRR-VGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 419 (588)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~ 419 (588)
++...++.+.++.. ..... .+ .........++.+..+++..+. .++.||+++| +.+..+.+
T Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~----g~l~dr~g~~-------~~l~~~~~ 297 (417)
T 2cfq_A 236 YDVFDQQFANFFTS---FFATGEQG----TRVFGYVTTMGELLNASIMFFA----PLIINRIGGK-------NALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHH---TSSSHHHH----THHHHHHHHHHHHHHHHHHHHH----HHHHHHHCHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhccCCC----hhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcHH-------HHHHHHHH
Confidence 11111111111110 01100 00 0001122233333333444443 3347887765 45555666
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHH
Q 007827 420 LAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA 499 (588)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~ 499 (588)
+.++++...+.. .+.+.++...++.+++.....+..+.++.|.+|++.||++.++.
T Consensus 298 ~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 298 IMSVRIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHTTC------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 665554444321 23344444555566666666667788999999999999999994
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 007827 500 -FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 569 (588)
Q Consensus 500 -~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~~~ 569 (588)
+..+.+|+.+++.+.|.+.+.. ++...|.+.+++.+++.+..++..++.+..++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 8888999999999999887643 45677888888888887776666665444443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=133.98 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=141.8
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccc--cchhHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTLGFASVAS 101 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~l~~~~~~~ 101 (588)
+..+.+.+..++....++++..+++.|+++.+|++..+.+++.+...++..++.+++|+++|| + |||+.+..+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 344555666677777888888999999998899999999999999999999999999999999 8 9999988777665
Q ss_pred H-HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 102 F-LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 102 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.++.
T Consensus 331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHH
T ss_pred HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhh
Confidence 5 4444433321 02456677778888998888888888999998863 23457
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHh
Q 007827 181 FFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 229 (588)
Q Consensus 181 ~~~~~~~~~~~-g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 229 (588)
.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.++
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999 99999999999999999999999887777666665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-11 Score=125.71 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=129.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHH-HHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVY-LTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASF 102 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~ 102 (588)
+..+...+..++.....++...+++.| +++.+|++..+++.+.+...++..++.+++|+++|| +|||+.+..+.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 344555556666667777888999999 888889999999999999999999999999999999 699999999888887
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhh
Q 007827 103 LGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 182 (588)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (588)
++.+++.+.. +... +...++.|++.+...+...++..|.+++ . +. .+.
T Consensus 337 ~~~~~~~~~~------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~--~~--~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ---D--TK--YGS 384 (438)
T ss_dssp HHHHHHHHCC------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG---G--HH--HHH
T ss_pred HHHHHHHHcC------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc---c--cc--chh
Confidence 7766665542 2222 3344778899999999999998888863 2 22 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHH
Q 007827 183 NWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIPAFMMFLSC 224 (588)
Q Consensus 183 ~~~~~~~~~g~~i~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~ 224 (588)
++.. ...+|..++|.+.+++.+..| ++..|++.++..++.+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333 567999999999999999888 9999887655444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=120.79 Aligned_cols=165 Identities=7% Similarity=0.010 Sum_probs=116.2
Q ss_pred HHHhhhhhhhHHHHHHHhcCC---CchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 007827 37 KLGTTGTSSNLLVYLTTIFNM---KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA 113 (588)
Q Consensus 37 ~~~~~~~~~~l~~yl~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~ 113 (588)
...++....++|.|+++.++. +....+.+.+...++..++.+++|+++|| +|||+.+..+.++.+++.++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~-- 309 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA-- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHh--
Confidence 334444556688888766553 34455677777778888999999999999 699999988877776665554432
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH-HHHHHHHH
Q 007827 114 ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFA 192 (588)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 192 (588)
.+.+.+++...+.+++.+...+....++.|.+|+ +.+++.+++ ++....+|
T Consensus 310 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 310 ----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp ----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHTTTHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHhHH
Confidence 1344555666666777666666667888998863 233455666 36677899
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007827 193 MMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 232 (588)
Q Consensus 193 ~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 362 ~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888988888877766666655444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=116.29 Aligned_cols=185 Identities=9% Similarity=0.037 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHH-----HHHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-----FASVA 100 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~-----~~~~~ 100 (588)
.+.+.+..+.....+......++.|+++.++.+..+.+.+.....++..++.++.|+++|| +|||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 3444445555566667777889999998889888888999999999999999999999999 69987654 56666
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhh
Q 007827 101 SFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 180 (588)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (588)
..++.+++....... ..+.+.+.+.+++..++.|++.+...+...+++.|.+|++.. +.
T Consensus 364 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~------g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALY---------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN------SQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHC---------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS------SS
T ss_pred HHHHHHHHHHHHHhc---------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH------HH
Confidence 555555444432100 001112456677788888999999999999999999975322 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 181 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 181 ~~~~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
+.++++...++|..+++.+.+++.+ .++.+.|.+.++..+++.++.++..++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999888765 467777777766666666655555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-08 Score=102.54 Aligned_cols=177 Identities=12% Similarity=0.006 Sum_probs=113.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 007827 32 NETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLT 111 (588)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~ 111 (588)
...+..+..+........++.+..+.+............+...++.++++++.|| +|||+.++.+.....++.+.+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHH
Confidence 3333333333333333445556778888888888888888999999999999999 699999999888887776665543
Q ss_pred hccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHH
Q 007827 112 AAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF 191 (588)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (588)
.... .+..........+..+++. ...+....+.+|.+|+ +.|+.+.++.+....+
T Consensus 363 ~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt------~~R~~~~g~~~~~~~~ 417 (491)
T 4gc0_A 363 FYTQ------------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWL 417 (491)
T ss_dssp HHTT------------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT------TTHHHHHHHHHHHHHH
T ss_pred Hhcc------------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH------hHHHHHHHHHHHHHHH
Confidence 2200 0112222222222222333 3346677899999974 2234667777788888
Q ss_pred HHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHHHHHhcccee
Q 007827 192 AMMISLTVIVYVQSD------VSWAWGLGIPAFMMFLSCAMFFLGSRLY 234 (588)
Q Consensus 192 g~~i~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
|+.+++.+.+.+.+. .++.+.|++.+++.+++.++.++..||+
T Consensus 418 ~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 418 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 888888777665432 3455677777777777766666666654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-09 Score=108.14 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHH-HHHH
Q 007827 26 MPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVA-SFLG 104 (588)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~-~~i~ 104 (588)
.+...+..++.....+.+..++|.|+++.+|+++.+.+.+.....++..++.++.|+++|| +||+ +..+... ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~~ 277 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHH
Confidence 3445555666677777788888999988899999999999999999999999999999999 5873 2233322 2222
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhH
Q 007827 105 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 184 (588)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (588)
......... + +.+.+.+++..++.|++.+...+...++..|.+| +.++...+.
T Consensus 278 ~~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g~ 330 (375)
T 2gfp_A 278 LLMWIPDWF-G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGAL 330 (375)
T ss_dssp SSSSHHHHH-H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHHH
T ss_pred HHHHHHhhh-c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHHH
Confidence 221111100 0 0245566777888899999999999999999874 124577888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Q 007827 185 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 217 (588)
Q Consensus 185 ~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~ 217 (588)
.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 888999999999999998887777777766543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=93.24 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=98.0
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhHhhhhh-ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 007827 374 SYAIFSMLGLTIWIPIYDRIIVPRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 452 (588)
Q Consensus 374 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~-~~k~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (588)
.+.....++..++.++..+ +.||+ ||| +.+.++.++..++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~G~----l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGW----IADRFFGKY-------NTILWLSLIYCVGHAFLAIF--------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHH----HHTTSSCSH-------HHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhcch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3344445555555555444 48887 765 56677777777777666542
Q ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 007827 453 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW 529 (588)
Q Consensus 453 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~---~~~~~~ig~~l~~~~~~~l~~~~~~~~~~~~ 529 (588)
..+.+.++...++.|++.+...+....++.|.+|++.|++..+. .+....+|..+++.+.+.+.+..
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 11566677778889999999999999999999999999877666 88888899999998888776532
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 007827 530 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 561 (588)
Q Consensus 530 ~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~ 561 (588)
+.++.|++.+++.++..+..++..
T Consensus 176 --------g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 176 --------GAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678777777666655554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.15 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-25 Score=236.86 Aligned_cols=162 Identities=15% Similarity=0.031 Sum_probs=130.6
Q ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 007827 44 SSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 123 (588)
Q Consensus 44 ~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (588)
.+.+.++++ ++|+|.++.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++++++....
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 344555765 689999999999999999999999999999999 6999999999999988888877653211
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007827 124 NQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 203 (588)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~~~~ 203 (588)
.+++.+++.|++.|++.+...+...++++|.+++ +.++..+++.+.+.++|..++|.+++.+
T Consensus 114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh------hcccccccccccccchhhhhhhhhhhhH
Confidence 2466789999999999999999999999999963 2235678888899999999999988876
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHhccce
Q 007827 204 QSD-VSWAWGLGIPAFMMFLSCAMFFLGSRL 233 (588)
Q Consensus 204 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
... .+|++.|++.++..++..++.+...++
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 654 479999988777666555554444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.1e-23 Score=213.51 Aligned_cols=399 Identities=9% Similarity=-0.057 Sum_probs=228.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
|..|.+.+..++..+....+.++++.|+++++|+|.++.|++.+++.++..+++++.|+++|| +||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 345666666677777777778899999999999999999999999999999999999999999 6999999999888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
+..+..+....+ ......+..+.+.+.+.+...........+..++ +.+......+
T Consensus 86 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGP--------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK----VSRRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHH--------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH----HHHHHSCCHH
T ss_pred HHHHHHHhhhhh--------------------hHHHHHHHHHHHhhhcccccccchhhcccccccc----hhhhhHHHHH
Confidence 777766653211 1112233444444444444433333333322221 1111223455
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhccceeeccCCCCChhhhHHHHHHHHHHhhccCCC
Q 007827 184 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 263 (588)
Q Consensus 184 ~~~~~~~~g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
........+..+++.+++.+.+.. |+..+........+..++..+..++.+..+.++++.. .....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 207 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANHSA 207 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-------------SCCCC
T ss_pred HHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-------------hhccc
Confidence 566677888888999988887654 5554544444444444444443333222111110000 00000
Q ss_pred CCCccccccCCCcccccCCCCCCCccchhhhhcccCcccccccCCCCCCccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Q 007827 264 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYV 343 (588)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (588)
.... .. .+....++.................
T Consensus 208 -----------------------~~~~--~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T d1pv7a_ 208 -----------------------FSLK--LA------------------------LELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -----------------------CCHH--HH------------------------HHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cccc--cc------------------------ccccccccccchhhhhHHHHHHHHh
Confidence 0000 00 0000000000000001111111111
Q ss_pred HHhcccceeeeeccccccccCCccccccchhhhhhhhHHHHHHHhhhhhhhhHhhhhhccCCCCCChHHHHHHHHHHHHH
Q 007827 344 ALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 423 (588)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~~g~~l~~~ 423 (588)
.......... ......+ ..............++..+...+ ..++.||.++| +.+.++.++.++
T Consensus 239 ~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~~~~-------~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 239 FDQQFANFFT----SFFATGE--QGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHT----TSSSCHH--HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCHH-------HHHHHHHHHHHH
T ss_pred hhcccccccc----ccccccc--cchhhhcccccccccccccchhh----hhhhhcccccc-------cchhhhHHHHHH
Confidence 1110101000 0000000 00000111222223333333333 33346665544 566677777777
Q ss_pred HHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHHHhHhhhhhhhhhccCCcchHHHHHHHH-HHH
Q 007827 424 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVG 502 (588)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~P~~~rg~~~~~~-~~~ 502 (588)
+++..... .+.+..+...++.+++.+...+....++.|.+|++.|+++.++. ++.
T Consensus 302 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (417)
T d1pv7a_ 302 RIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF 357 (417)
T ss_dssp HHHHHHTC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTT
T ss_pred hhhccccc------------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence 66655542 45566777788889999999999999999999999999999985 567
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007827 503 FAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 567 (588)
Q Consensus 503 ~~ig~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~~~~~~~~~~~~ 567 (588)
..+|..+++.+.|.+.|.. ++...|++.+++.++..++.++..++.+..
T Consensus 358 ~~~g~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 358 KQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 7899999999999998765 456788888888888877777776544433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=8.9e-11 Score=121.48 Aligned_cols=179 Identities=10% Similarity=-0.040 Sum_probs=130.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHH
Q 007827 24 KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103 (588)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i 103 (588)
+..+.+....++.....++...+++.|+.+.++++..+.+.......++..++.+++|+++|| ++|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHH
Confidence 344555566667777778888999999999999999999999999999999999999999999 6988755444443333
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhh
Q 007827 104 GMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 183 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (588)
...........+ ..+.+..++..++.|++.+...+....+..|.+|+ +.++.+.+
T Consensus 328 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHHH
T ss_pred HHHHHHHHHhcc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHH
Confidence 222222211100 13456667777788888888888888889998863 23356677
Q ss_pred HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 007827 184 WYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 228 (588)
Q Consensus 184 ~~~~~~~~-g~~i~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (588)
+.+...++ |..++|.+.+++.+.+||+..|++..+..+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 77777776 5667899999999999999988877666655555433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.8e-11 Score=120.91 Aligned_cols=147 Identities=7% Similarity=-0.028 Sum_probs=116.3
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 007827 53 TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 132 (588)
Q Consensus 53 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (588)
+..+.+....+.......++..++..+.|++.|| +|||+.+..+.++..++.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA--------------------- 309 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccc---------------------
Confidence 3445566677788888889999999999999999 699999999988888777766664
Q ss_pred CCchhHHHHHHHHHHHHhhcccccccchhhccccCCCCCCCCccchhhhhhHH-HHHHHHHHHHHHHHHHHhccccchhh
Q 007827 133 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY-YFTFTFAMMISLTVIVYVQSDVSWAW 211 (588)
Q Consensus 133 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~i~~~~~~~~g~~~ 211 (588)
.+.+.+++..++.|++.+...+...+++.|.+|+ +.+++.++.. .....+|..++|.+.|++.+.+|++.
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 3466778888899999999999999999999863 2234556654 34567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 007827 212 GLGIPAFMMFLSCAMFFLG 230 (588)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ 230 (588)
.|++.++..++..++..+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988777666665554443
|