Citrus Sinensis ID: 007842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
Protein Sequence
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mamvdeplyPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELipflsenndddDEVLLAMAEELGVFipyvggvehahvllppletlctveetCVRDKAVESLCRIGsqmresdlvdwYIPLVKRLAAGEWFTARVSACGLfhiaypsapdILKTELRSIYTQLcqddmpmvRRSAASNLgkfaatvepahlkTDIMSIFEdltqddqdSVRLLAVEGCAAlgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrmdlvPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCvkelssdssQHVRSALASVIMGmapllgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLQDKVYSIRDAAANNLKRLAEefgpewamqhitpqvleminnphyLYRMTILRAISLLapvmgseitcsrllpvvinaskdrvpniKFNVAKVLQSLIpivdqsmvekTIRPClveltedpdvdvRFFATQAIQSIDHVMMSS
Flexible Loop (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIaralgeertrkelipflsennddDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCrigsqmresdlvdWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsmvEKTIRPCLVEltedpdvdvRFFATQAiqsidhvmmss
Low Complexity Region (SEG)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered region (IsUnstruct)
******PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS*****DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL******HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID******
Disordered Region (DISOPRED)
*A**DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM**
Disordered Region (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE**********SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered Region (DISPRO)
*****EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	587	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	1.0	1.0	0.938	0.0
Q38951	587	Serine/threonine-protein	no	no	1.0	1.0	0.914	0.0
Q38845	588	Serine/threonine-protein	no	no	0.989	0.988	0.877	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.671	0.997	0.893	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.976	0.972	0.590	0.0
P54612	589	Serine/threonine-protein	yes	no	0.976	0.972	0.590	0.0
Q76MZ3	589	Serine/threonine-protein	yes	no	0.976	0.972	0.590	0.0
P30153	589	Serine/threonine-protein	yes	no	0.976	0.972	0.590	0.0
P54613	602	Serine/threonine-protein	no	no	0.976	0.951	0.580	0.0
Q4QQT4	601	Serine/threonine-protein	no	no	0.976	0.953	0.580	0.0

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/587 (93%), Positives = 576/587 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/587 (91%), Positives = 567/587 (96%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct: 61  DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQ++VE  IRPCLVEL+EDPDVDVR+FA QA+QSID+VMMSS
Sbjct: 541 LIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/581 (87%), Positives = 555/581 (95%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct: 121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct: 301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct: 421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct: 481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581
           LIPIVDQS+V+KTIR CLV+L+EDPDVDVR+FA QA+ SID
Sbjct: 541 LIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/395 (89%), Positives = 377/395 (95%), Gaps = 1/395 (0%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 253
           VE AHLKTDIMS+F+DLTQDDQDS R LAVEGCAALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313
           SWRVRYMVANQLYELCEAVGP+ T+ +LVPAYVRLLRDN AEVRIAAAGKV+KF RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373
           ELAIQHILPCVKELS+DSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEFGPEWAMQHITPQVLEMINNPHYLYR 492
           DDKLGAL MQWL+DK YSIR+AAANN+KRL AEEFGPEWAMQHI PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK 552
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+S+VE 
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVES 360

Query: 553 TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           TIRPCLVEL+EDPDVDVRFFA+QA+QS D V MSS
Sbjct: 361 TIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 440/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/577 (58%), Positives = 436/577 (75%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +K++I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 259

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL  AVGP+ T  DL+PA+  LL+D EAEVR AAA KV
Sbjct: 260 TLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKV 319

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILPC+KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 320 KELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLL 379

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 380 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 439

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 440 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 499

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I++L+   G EIT  ++LP+V+  + D+V N++FNVAK LQ 
Sbjct: 500 LVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 559

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D   +++ ++P L +L +D D+DV++FA +AI
Sbjct: 560 IGPILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/577 (58%), Positives = 434/577 (75%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +KT+I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 258

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGP+    DL+PA+  LLRD EAEVR AAA KV
Sbjct: 259 TLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKV 318

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILP +KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 319 RELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLL 378

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 379 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 438

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 439 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 498

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I+ L+   G EIT  ++LP+V+  + D+V N++FNVAK LQ 
Sbjct: 499 LVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 558

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D + ++  ++P L +L +D D+DV++FA +AI
Sbjct: 559 IGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAI 595

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
255576493	587	serine/threonine protein phosphatase 2a	1.0	1.0	0.962	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	1.0	1.0	0.955	0.0
353259711	587	serine/threonine protein phosphatase 2a	1.0	1.0	0.952	0.0
224101693	586	predicted protein [Populus trichocarpa]	0.998	1.0	0.947	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	1.0	1.0	0.938	0.0
224108518	587	predicted protein [Populus trichocarpa]	1.0	1.0	0.938	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	1.0	1.0	0.936	0.0
683502	587	protein phosphatase 2A 65 kDa regulatory	1.0	1.0	0.936	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	1.0	1.0	0.936	0.0
297734191	642	unnamed protein product [Vitis vinifera]	1.0	0.914	0.936	0.0

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/587 (96%), Positives = 577/587 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD+LK ELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+ NPHYLYRMTILRAISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVTNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LI IVDQS+VEKTIRPCL EL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 541 LISIVDQSVVEKTIRPCLAELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/587 (95%), Positives = 580/587 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAP++LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAAT+EPAHLKTDIM+IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVL 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMT+LRA+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQ +VEKTIRP LVEL+EDPDVDVRFFA QA+QSIDHVMMSS
Sbjct: 541 LIPIVDQPVVEKTIRPSLVELSEDPDVDVRFFANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/587 (95%), Positives = 575/587 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGE+RTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREG 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV W+IPLVKRLAAGEWFTARVSACGLFHIAYPSA + LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVSWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA +LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMALVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLG+LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGSLCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMI+NPHYLYRMTILRAI LLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMIDNPHYLYRMTILRAICLLAPVMGSEITCSKLLPVVVTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVD S+VEKTIRP LVEL+EDPDVDVRFFATQA+Q+IDHVMMSS
Sbjct: 541 LIPIVDHSVVEKTIRPTLVELSEDPDVDVRFFATQALQAIDHVMMSS 587

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101693|ref|XP_002312385.1| predicted protein [Populus trichocarpa] gi|222852205|gb|EEE89752.1| predicted protein [Populus trichocarpa]

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/586 (94%), Positives = 574/586 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ V+EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGGV++AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+W+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVEWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDTLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ+CVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQNCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA+QHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAVQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM  NPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVVINASKDRVPNIKFN AKVLQS
Sbjct: 481 LEMSTNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVINASKDRVPNIKFNAAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 586
           LIPIVDQS+VEKTI PCL EL EDPDVDVRFFA QA+Q+I  VMMS
Sbjct: 541 LIPIVDQSVVEKTICPCLFELGEDPDVDVRFFANQALQTIASVMMS 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/587 (93%), Positives = 576/587 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/587 (93%), Positives = 574/587 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ ++EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTMEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLA+AEELGVFIPYVGGVE+AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLALAEELGVFIPYVGGVEYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFT+RVSACGLFHIAYPSAP++LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE  HLK DI+SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVESVHLKADILSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PE AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPEHAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMEHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM  NPHYLYRMTI+RA+SLLAPVMGSEITCS+LLPVV+NASKDRV NIKFNVAKVLQS
Sbjct: 481 LEMSTNPHYLYRMTIIRAVSLLAPVMGSEITCSKLLPVVVNASKDRVSNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQS+ EKTIRPCLVEL+EDPDVDVRFFA QA+Q+ID VMMSS
Sbjct: 541 LIPIVDQSVAEKTIRPCLVELSEDPDVDVRFFANQALQTIDSVMMSS 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/587 (93%), Positives = 577/587 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL +VEETCVR+KAVESLCR+GSQM+ES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSSVEETCVREKAVESLCRVGSQMKES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +IPLVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFIPLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+F+DLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|683502|emb|CAA57528.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana]

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/587 (93%), Positives = 575/587 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQ ILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQDILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           LIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/587 (93%), Positives = 575/587 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           L PIVDQS+V+KTIRPCLVEL+EDPDVDVRFFA+QA+Q+ D +MMSS
Sbjct: 541 LTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/587 (93%), Positives = 575/587 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 56  MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 115

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 116 DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 175

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 176 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 235

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 236 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 295

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 296 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 355

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 356 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 415

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 416 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 475

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 476 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 535

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 536 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 595

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
           L PIVDQS+V+KTIRPCLVEL+EDPDVDVRFFA+QA+Q+ D +MMSS
Sbjct: 596 LTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	1.0	1.0	0.938	8.6e-294
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	1.0	1.0	0.914	2.9e-286
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.989	0.988	0.877	2.6e-276
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.976	0.972	0.590	1.2e-177
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.590	1.2e-177
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.590	1.9e-177
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.976	0.972	0.590	2.5e-177
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.590	2.5e-177
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.976	0.972	0.590	2.5e-177
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.976	0.972	0.590	2.5e-177

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2821 (998.1 bits), Expect = 8.6e-294, P = 8.6e-294
 Identities = 551/587 (93%), Positives = 576/587 (98%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct:   481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
             LIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct:   541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2750 (973.1 bits), Expect = 2.9e-286, P = 2.9e-286
 Identities = 537/587 (91%), Positives = 567/587 (96%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct:    61 DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct:   121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct:   481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 587
             LIPIVDQ++VE  IRPCLVEL+EDPDVDVR+FA QA+QSID+VMMSS
Sbjct:   541 LIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 2656 (940.0 bits), Expect = 2.6e-276, P = 2.6e-276
 Identities = 510/581 (87%), Positives = 555/581 (95%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct:    61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct:   121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
              ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct:   241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct:   301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct:   421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct:   481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581
             LIPIVDQS+V+KTIR CLV+L+EDPDVDVR+FA QA+ SID
Sbjct:   541 LIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 341/577 (59%), Positives = 440/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 341/577 (59%), Positives = 440/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
 Identities = 341/577 (59%), Positives = 439/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 341/577 (59%), Positives = 439/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 341/577 (59%), Positives = 439/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 341/577 (59%), Positives = 439/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 341/577 (59%), Positives = 439/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5783	0.9676	0.9610	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5691	0.9710	0.9760	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8936	0.6712	0.9974	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5909	0.9761	0.9728	yes	no
Q38845	2AAA_ARATH	No assigned EC number	0.8777	0.9897	0.9880	no	no
P30153	2AAA_HUMAN	No assigned EC number	0.5909	0.9761	0.9728	yes	no
P31383	2AAA_YEAST	No assigned EC number	0.4513	0.9727	0.8992	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5909	0.9761	0.9728	yes	no
Q09543	2AAA_CAEEL	No assigned EC number	0.4982	0.9812	0.9762	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9386	1.0	1.0	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.9148	1.0	1.0	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5909	0.9761	0.9728	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5120	0.9778	0.9728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	587
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	3e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.003

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 59/265 (22%), Positives = 92/265 (34%), Gaps = 43/265 (16%)

Query: 43  ERTRKELIPFLSENNDDDDEVL-LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC 101
                E    L +  +D+D ++ L+ A  LG       G E A   +P L  L + E+  
Sbjct: 38  LELAPEAADELLKLLEDEDLLVRLSAAVALGEL-----GSEEA---VPLLRELLSDEDPR 89

Query: 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHI----AYPSA 156
           VRD A ++L  +G             PLV+ L           +A  L  +    A    
Sbjct: 90  VRDAAADALGELGDPEA-------VPPLVELLENDENEGVRAAAARALGKLGDERALDPL 142

Query: 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD 216
            + L+ E            +  VR +AA  LG+         L         +L +D+  
Sbjct: 143 LEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLI--------ELLEDEDA 194

Query: 217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276
            VR  A     ALG+L            ++V    D+S  VR            A+G   
Sbjct: 195 DVRRAAAS---ALGQLGSE---NVEAADLLVKALSDESLEVR-------KAALLALGEIG 241

Query: 277 TRMDLVPAYVRLLRDNEAEVRIAAA 301
              + V A  + L D +  + + AA
Sbjct: 242 DE-EAVDALAKALEDEDVILALLAA 265

Length = 335

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQH 334
           +   +PA V LL  ++  V+  AA  ++      N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 335 VRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 378
           V  A       +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 210 LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269
           L +D+   VRL A     ALG+L   +      +P++     D+  RVR   A+ L EL 
Sbjct: 51  LLEDEDLLVRLSAAV---ALGELGSEE-----AVPLLRELLSDEDPRVRDAAADALGEL- 101

Query: 270 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329
              G       LV     L  D    VR AAA    +    L  E A+  +L  +++  S
Sbjct: 102 ---GDPEAVPPLVEL---LENDENEGVRAAAA----RALGKLGDERALDPLLEALQDEDS 151

Query: 330 DSSQHVR-SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388
            S+     +AL  V    A  LG+    E +  + + LL+DE  DVR    S L Q    
Sbjct: 152 GSAAAALDAALLDVRAAAAEALGELGDPEAIPLL-IELLEDEDADVRRAAASALGQ---- 206

Query: 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
             +   +      +V+   D    VR A + 
Sbjct: 207 --LGSENVEAADLLVKALSDESLEVRKAALL 235

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	587
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.96
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.94
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.93
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.92
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.91
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.9
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.9
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.88
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.88
PRK09687	280	putative lyase; Provisional	99.87
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.86
PTZ00429	746	beta-adaptin; Provisional	99.86
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.85
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.84
PRK09687	280	putative lyase; Provisional	99.84
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.84
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.83
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.76
PTZ00429	746	beta-adaptin; Provisional	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.75
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.66
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.66
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.63
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.62
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.6
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.54
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.52
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.52
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.49
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.48
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.48
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.44
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.4
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.35
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.35
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.33
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.31
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.3
KOG1243	690	consensus Protein kinase [General function predict	99.3
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.29
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.29
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.28
TIGR02270	410	conserved hypothetical protein. Members are found	99.27
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.27
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.24
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.22
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.18
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.18
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.17
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.16
TIGR02270	410	conserved hypothetical protein. Members are found	99.15
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.14
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.12
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.11
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	99.07
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.06
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.06
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.05
KOG1243	690	consensus Protein kinase [General function predict	99.05
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	99.04
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.97
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.96
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.94
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.89
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.86
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.85
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.85
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.84
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.83
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.8
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.78
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.74
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.74
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.73
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.73
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.71
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.71
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.69
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.64
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.64
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.61
KOG0567	289	consensus HEAT repeat-containing protein [General	98.6
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.57
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.54
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.54
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.49
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.48
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.48
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.46
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.45
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.44
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.43
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.41
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.39
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.38
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.38
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	98.36
KOG2025	892	consensus Chromosome condensation complex Condensi	98.34
KOG2025	892	consensus Chromosome condensation complex Condensi	98.34
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.34
KOG0567	289	consensus HEAT repeat-containing protein [General	98.3
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.29
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.28
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.27
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.27
COG5098	1128	Chromosome condensation complex Condensin, subunit	98.25
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.25
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.23
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.18
PF05004	309	IFRD: Interferon-related developmental regulator (	98.14
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.13
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.1
KOG2956	516	consensus CLIP-associating protein [General functi	98.08
PF05004	309	IFRD: Interferon-related developmental regulator (	98.07
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.06
KOG2956	516	consensus CLIP-associating protein [General functi	98.03
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.03
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.01
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.0
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.0
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.99
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.98
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.91
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.88
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.87
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.86
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.76
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.74
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.74
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.7
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.7
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.68
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.67
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.67
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.6
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.6
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.59
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.57
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.56
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.53
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.51
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.51
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.41
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.35
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.29
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.28
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.23
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.17
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	97.17
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.15
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.11
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.07
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.96
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.93
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.91
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.8
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.79
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.63
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.61
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.6
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	96.59
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.56
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.55
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.54
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.46
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.42
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.42
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.35
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.31
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.24
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.2
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.17
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.13
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.13
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.08
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.0
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.97
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.92
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.86
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	95.79
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.74
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	95.57
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.5
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	95.47
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	95.37
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	95.23
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	95.19
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	95.11
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.09
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	95.07
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.99
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	94.9
KOG2005	878	consensus 26S proteasome regulatory complex, subun	94.88
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	94.77
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	94.77
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.76
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.75
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	94.75
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.74
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.68
COG5110	881	RPN1 26S proteasome regulatory complex component [	94.6
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.53
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	94.39
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.39
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.37
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.36
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.36
KOG1048	717	consensus Neural adherens junction protein Plakoph	94.28
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.28
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.17
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.15
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.15
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.07
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	93.98
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.82
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.79
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	93.59
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.56
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.55
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	93.35
KOG2149	393	consensus Uncharacterized conserved protein [Funct	93.31
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	93.29
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.19
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.11
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.93
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.9
PF05536	543	Neurochondrin: Neurochondrin	92.88
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.63
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.59
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.48
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.46
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	92.44
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	92.37
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	92.34
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.29
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	92.23
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	92.09
KOG2149	393	consensus Uncharacterized conserved protein [Funct	92.05
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.04
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	92.02
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	92.01
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	91.97
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.87
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	91.82
cd03561	133	VHS VHS domain family; The VHS domain is present i	91.48
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.35
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.18
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	91.12
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	90.98
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	90.68
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.41
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.38
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.38
KOG2973	353	consensus Uncharacterized conserved protein [Funct	90.33
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.33
KOG2081	559	consensus Nuclear transport regulator [Intracellul	90.32
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.13
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	89.85
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.59
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	89.54
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	89.19
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	88.7
KOG1048	717	consensus Neural adherens junction protein Plakoph	88.47
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	88.31
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.97
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	87.94
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	87.75
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	87.73
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	87.41
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	87.11
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	87.1
KOG3036	293	consensus Protein involved in cell differentiation	87.01
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.92
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	86.79
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	86.63
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	86.56
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	86.56
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	86.53
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	86.49
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	86.02
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.0
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.95
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	84.85
COG5369	743	Uncharacterized conserved protein [Function unknow	84.36
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	84.35
PF05536	543	Neurochondrin: Neurochondrin	84.26
KOG2081	559	consensus Nuclear transport regulator [Intracellul	84.24
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	83.43
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	82.46
KOG2005	878	consensus 26S proteasome regulatory complex, subun	82.4
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	81.77
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	81.3
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	81.16
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	80.94

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-52  Score=414.17  Aligned_cols=578  Identities=55%  Similarity=0.826  Sum_probs=544.0

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhh
Q 007842            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~   86 (587)
                      ++||+..+++.++..|.+.|..+.+.+.+++..+|.++++.+++||+.+..++++++...++..+|.+.+++|++++...
T Consensus        80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~  159 (759)
T KOG0211|consen   80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM  159 (759)
T ss_pred             ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence            79999999999999999999999999999999999999999999999997788899999999999999999999999999


Q ss_pred             hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCC-hHHHHHHH
Q 007842           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELR  165 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~l~  165 (587)
                      +++.++.+..+.+..||+.++..+..++..++.+.....+.|.+..+..++|+..|..++++++..+...+ +..+.++.
T Consensus       160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr  239 (759)
T KOG0211|consen  160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR  239 (759)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence            99999999999999999999999999999999888889999999999999999999999999999999998 55999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-hhhhchHH
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILP  244 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~  244 (587)
                      +...++++|.++.||..+++-++.+++.++.+.....++|.+.++..|+.+.||.+|...+..+...+... ...+.+.+
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~  319 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTE  319 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhH
Confidence            99999999999999999999999999999888888999999999999999999999999999999988876 67788999


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----HHHHHHhH
Q 007842          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHI  320 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~i  320 (587)
                      .+.+..+|.+|++|......+..+...+|++.......+.+...++|..+++|.+++.-...++....    .....+.+
T Consensus       320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i  399 (759)
T KOG0211|consen  320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI  399 (759)
T ss_pred             HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence            99999999999999999999999999999988888899999999999999999999999999988776    33445677


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHh---hhhhhhhhchhhHHhh
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQS  397 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~---l~~l~~~~~~~~~~~~  397 (587)
                      +|.+..+..|++..||.+.+..+..+...+|++...+.+.|.+...++|..+.||......   +..+....|.....+.
T Consensus       400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s  479 (759)
T KOG0211|consen  400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS  479 (759)
T ss_pred             hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence            8999999999999999999999999999999888888999999999999999999999954   4444556677788899


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  477 (587)
                      .+|.+.++..|.+|++|.++++.+..++...|.+++.+.+.+++..++.|....+|.+|+..+..++..+|.+|....++
T Consensus       480 lLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i  559 (759)
T KOG0211|consen  480 LLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEI  559 (759)
T ss_pred             hhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHH
Q 007842          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC  557 (587)
Q Consensus       478 ~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~  557 (587)
                      |.++.+..+++|.+|++.+.++..++..+|.+.+.+.++|.+..+..|++++||.++++.+..+.+.+......+.+.|.
T Consensus       560 ~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pl  639 (759)
T KOG0211|consen  560 PKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPL  639 (759)
T ss_pred             HHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHH
Confidence            99999998889999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          558 LVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       558 l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      +..+.+|++.|||+.|..|++.+....
T Consensus       640 l~~L~~d~~~dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  640 LETLSSDQELDVRYRAILAFGSIELSR  666 (759)
T ss_pred             HHHhccCcccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999887643

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-29  Score=254.49  Aligned_cols=574  Identities=17%  Similarity=0.202  Sum_probs=425.9

Q ss_pred             HHHHHHhcC-ccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-CcHHHHHHHHHHhccccccCCCc--chHhhh
Q 007842           12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVGGV--EHAHVL   87 (587)
Q Consensus        12 ~~l~~~l~s-~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~l~~~~~~~--~~~~~l   87 (587)
                      +.|++.+.+ ..+.+|..-.+.+.++++...++ .|.+++|++.++.. .++..|..+...+..+...+|+.  .|...+
T Consensus        82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l  160 (1075)
T KOG2171|consen   82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDL  160 (1075)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHH
Confidence            456666655 46889999999999999999999 99999999999664 56677777777777776666653  266788


Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcC--hhhH--HhhHHHHHHHHh----cCCCCcchhhHHhhhHhhcCCCCh-
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMR--ESDL--VDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPD-  158 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~-  158 (587)
                      .++|.+-+.|+...||-.|+++++.++..++  ++..  ...++|-+...+    .+++...-..+...+..+....++ 
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            9999888888777799999999999999885  2222  234666444433    333333345566666666665554 


Q ss_pred             --HHHHHHHHHHHHhcCCC--ChHHHHHHHHhHHHHHHhhcc-----chhhhHHHHHHHHhhhCC---------------
Q 007842          159 --ILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDD---------------  214 (587)
Q Consensus       159 --~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~d~---------------  214 (587)
                        .+...++.+......+.  +..+|..+++.+..+++..+.     ..+...+++.+..+..|.               
T Consensus       241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded  320 (1075)
T KOG2171|consen  241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED  320 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence              35566777777766654  688999999999999988432     235556666666654221               


Q ss_pred             -chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCC
Q 007842          215 -QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD  291 (587)
Q Consensus       215 -~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d  291 (587)
                       ...-...|.+++..++-.++++...+.+++.+...++.++|+-|.++..+|+.+++..++..  ..+.+++..++.++|
T Consensus       321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND  400 (1075)
T ss_pred             cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence             12346688999999999999998899999999999999999999999999999998765422  345799999999999


Q ss_pred             ChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchhHH---HHhHHH-HH
Q 007842          292 NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDAT---IEQLLP-IF  363 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~-~l  363 (587)
                      +.+.||.+|+.+++.+...+.++   .+.+.+.|.+...+.+. +++|...++.++.++.+...++.+   ++.++. .+
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999988875   34455667777777765 679999999999999888776554   444444 44


Q ss_pred             HHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhChhhhHHH-
Q 007842          364 LSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK-  436 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~----~~~vR~~~~~~l~~l~~~~~~~~~~~~-  436 (587)
                      ..++.++.+.|++.++.+|+.++...+.+  .+.+.++|.+..++...    ....|...+++++.++..+|++.|.+. 
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            45566778999999999999999877654  35578899999887543    356788889999999999998887653 


Q ss_pred             --HHHHHHHh---cCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhcc------------------------
Q 007842          437 --LGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMIN------------------------  485 (587)
Q Consensus       437 --l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~------------------------  485 (587)
                        ++..+..+   ..+.+...|...+.+++.+++.+|.+|  +.+.++|.++...+                        
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~  640 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEV  640 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchh
Confidence              44444444   345666777778888888887777664  33444444433221                        


Q ss_pred             ------------------------------------------------------CCchhHHHHHHHHHHHhhcc------
Q 007842          486 ------------------------------------------------------NPHYLYRMTILRAISLLAPV------  505 (587)
Q Consensus       486 ------------------------------------------------------d~~~~~R~~a~~~l~~l~~~------  505 (587)
                                                                            .....+|.+|+.++..+...      
T Consensus       641 ~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~  720 (1075)
T KOG2171|consen  641 VELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ  720 (1075)
T ss_pred             hccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence                                                                  11233455555555554321      


Q ss_pred             -------------------------------------------cCh----------------------------------
Q 007842          506 -------------------------------------------MGS----------------------------------  508 (587)
Q Consensus       506 -------------------------------------------~~~----------------------------------  508 (587)
                                                                 +|.                                  
T Consensus       721 ~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~  800 (1075)
T KOG2171|consen  721 GGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDD  800 (1075)
T ss_pred             cChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                                                       110                                  


Q ss_pred             --------------------------------------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842          509 --------------------------------------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       509 --------------------------------------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--  548 (587)
                                                            ..+...+.|.+...+.++.++-|..++-.++.++...++.  
T Consensus       801 eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~  880 (1075)
T KOG2171|consen  801 EEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASA  880 (1075)
T ss_pred             hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccc
Confidence                                                  0124567788888887777777999999999988887775  


Q ss_pred             HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          549 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .+.+.++|.+.+++.|.+|+||.+|.+++|-++++-|+
T Consensus       881 ~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~  918 (1075)
T KOG2171|consen  881 KYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE  918 (1075)
T ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence            67789999999999999999999999999999998764

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-31  Score=266.89  Aligned_cols=514  Identities=20%  Similarity=0.268  Sum_probs=444.9

Q ss_pred             hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhH
Q 007842           71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH  150 (587)
Q Consensus        71 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~  150 (587)
                      +.+++-.+|..-....++|.+.... +++..|...+...++.+....+...+...++|-+..++.+....+|..++..+.
T Consensus       106 l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~  184 (759)
T KOG0211|consen  106 LSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLL  184 (759)
T ss_pred             ccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333333343334556788887777 888899999999999998888777778888998888888887778888887666


Q ss_pred             hhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 007842          151 IAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  229 (587)
Q Consensus       151 ~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l  229 (587)
                      ......+++ .+..+.+++..+..++-..-|..++..++.......++.+...+.+.+.++++|+++.||.++++.++.+
T Consensus       185 ~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~  264 (759)
T KOG0211|consen  185 KVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNI  264 (759)
T ss_pred             HHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHH
Confidence            655555444 5688889998888774444566777777777777766778899999999999999999999999999999


Q ss_pred             hhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007842          230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (587)
Q Consensus       230 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  308 (587)
                      ++.++.+...+.+.|.+.++..|....||..|...+..+...+..+ ...+.+.+.+.+..+|..|.+|......+..+.
T Consensus       265 a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~  344 (759)
T KOG0211|consen  265 AKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS  344 (759)
T ss_pred             HHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence            9999988888899999999999999999999999999999988876 556678999999999999999999999999999


Q ss_pred             hhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       309 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ..+|++.......+.+..+++|..|.+|.+.+.-...+.....    .+...+.++|.+..+..|.+..||.+.+..+..
T Consensus       345 ~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~  424 (759)
T KOG0211|consen  345 SAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITG  424 (759)
T ss_pred             HHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccc
Confidence            9888865556678889999999999999999998888887765    334456778999999999999999999999999


Q ss_pred             hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH---HhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      +.+.+|.+.....++|.+...++|..+.||...+..+...-   ...|.+...+..+|.+..+-.|..|++|.+.+..+.
T Consensus       425 ~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip  504 (759)
T KOG0211|consen  425 LSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP  504 (759)
T ss_pred             cCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence            99999988777889999999999999999999996554433   344677788889999999999999999999999999


Q ss_pred             HHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          462 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       462 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      .++...|.+++.+.+-+.+...+.|..+.+|.+|...+..++..+|.+|....+.|.++....++++.+|.+.+.++..+
T Consensus       505 ~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~l  584 (759)
T KOG0211|consen  505 QLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHEL  584 (759)
T ss_pred             HHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence            99999998888888888888889999999999999999999999999999999999999999888999999999999999


Q ss_pred             hhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          542 IPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       542 ~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      ++.+|.+.+.+.++|.+..+..|++++||+++++.|..+.+++.
T Consensus       585 a~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  585 AEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999988764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-29  Score=249.50  Aligned_cols=543  Identities=17%  Similarity=0.233  Sum_probs=420.1

Q ss_pred             ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--CCcHHHHHHHHHHhcccc----ccCCCcc
Q 007842            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFI----PYVGGVE   82 (587)
Q Consensus         9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~----~~~~~~~   82 (587)
                      .++..|+..+-|+|.++|.+|-+.+.++.+   .+    .++|.|..+.  ..++++|+.++-.+.++.    +.+. .+
T Consensus         4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~----~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e   75 (1075)
T KOG2171|consen    4 APLEQLLQQLLSPDNEVRRQAEEALETLAK---TE----PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AE   75 (1075)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHhhc---cc----chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HH
Confidence            478899999999999999999999987643   22    2778777643  467788887776665543    2333 23


Q ss_pred             hHhhhH-HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---
Q 007842           83 HAHVLL-PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---  158 (587)
Q Consensus        83 ~~~~l~-~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---  158 (587)
                      ....+. .+|..+...+.+.||++-.+.+..+++..-++ -|..+++++.+..++++...|.+|+.++..+...++.   
T Consensus        76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            333443 34555667889999999999999999998887 6899999999999999999999999999877665553   


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-ch-------hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH-------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~-------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                      .+...+.+++.+.+.|++..||..++++++.++..+.. ..       ..+.++..+....++.+...-..+.+.+..++
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence            37789999999999999888999999999999999852 11       23444445555667777777788888888888


Q ss_pred             hhcCh--hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCC----h----
Q 007842          231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDN----E----  293 (587)
Q Consensus       231 ~~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~----~----  293 (587)
                      ...++  ......++.+......+.  +..+|..|++.+..+++..+.     ......+++.+...+.|.    +    
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            77665  234555666666666554  678999999999988886331     113346777777765321    1    


Q ss_pred             --------HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHH
Q 007842          294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF  363 (587)
Q Consensus       294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l  363 (587)
                              ..--..|..++..++.++|++...+.+++.+..++.+++|+-|.++..+++.+++.+++.  ...+.++|++
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V  394 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV  394 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence                    124567889999999999999888999999999999999999999999999999887652  3578899999


Q ss_pred             HHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHH--
Q 007842          364 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKL--  437 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l--  437 (587)
                      ...++|+++.||.+|+.+++.+...+.++   .+.+.+.|.+...+.+ .+.+|...++.++-.+.....++.+.+++  
T Consensus       395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~  474 (1075)
T KOG2171|consen  395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG  474 (1075)
T ss_pred             HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999999999999988764   3445667777777666 46799999988888888777665555443  


Q ss_pred             -HH-HHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc----hhHHHHHHHHHHHhhcccChH
Q 007842          438 -GA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH----YLYRMTILRAISLLAPVMGSE  509 (587)
Q Consensus       438 -~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~----~~~R~~a~~~l~~l~~~~~~~  509 (587)
                       +. .+..++..+.+.||+.++.+++.++...+..|  +-+.++|.+...+.+.+    ...|...+++++-++..+|.+
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke  554 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE  554 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence             33 34456688899999999999999999887775  45889999988876543    568888999999999999987


Q ss_pred             HHH---hhHHHHHHhh---cCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHH
Q 007842          510 ITC---SRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE  560 (587)
Q Consensus       510 ~~~---~~il~~l~~~---l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~  560 (587)
                      .|.   ..++..+..+   -.+.+...|.-.....+.++..+|++  ++...++|.+.+
T Consensus       555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~  613 (1075)
T KOG2171|consen  555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK  613 (1075)
T ss_pred             hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence            653   4456666665   45567788999999999999999887  566777776655

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-29  Score=237.15  Aligned_cols=500  Identities=21%  Similarity=0.202  Sum_probs=363.2

Q ss_pred             cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY  153 (587)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~  153 (587)
                      -.+++.++|.|.+++.+++....+.|..+|.++++....       +...+.++|.+.++.++.....|.-|+..+..+.
T Consensus       123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i  202 (885)
T KOG2023|consen  123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI  202 (885)
T ss_pred             cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence            346789999999999999999999999999999885432       1234568888888999988889988888887666


Q ss_pred             CCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 007842          154 PSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA  228 (587)
Q Consensus       154 ~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~  228 (587)
                      ..-+..   ..+.+++.+..+.+|++++||+.+|.++..+.+.-.+.  .....++....+..+|.+.+|...|++.+.+
T Consensus       203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            555443   55788889999999999999999999999998875431  2334455556666788889999999999999


Q ss_pred             HhhhcCh----hhhhhchHHHHHHhc----------c------------------------------------C------
Q 007842          229 LGKLLEP----QDCVAHILPVIVNFS----------Q------------------------------------D------  252 (587)
Q Consensus       229 l~~~~~~----~~~~~~l~~~l~~~~----------~------------------------------------d------  252 (587)
                      +++.--.    ..+.+.++|.+...+          +                                    |      
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            9875322    124555666654321          1                                    0      


Q ss_pred             ----CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHH
Q 007842          253 ----KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE  326 (587)
Q Consensus       253 ----~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~  326 (587)
                          .+|..|+..+.++..++..+|.+.. ..++|.+.+.+..++|.+|++++-+++.+++.+-..  .+++.++|++..
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~  441 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS  441 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence                1499999999999999999887653 568899999999999999999999999999977443  567889999999


Q ss_pred             hccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHH---HHhhcCCChHHHHHHHHhhhhhhhhhchhh--HHhhHHHH
Q 007842          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPA  401 (587)
Q Consensus       327 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~  401 (587)
                      ++.|+.+-||+..|+.++.++...-.+...+++.|.+   ...+-|.+..|+++|+.+++.+-+..|.+-  +...++..
T Consensus       442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~  521 (885)
T KOG2023|consen  442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQ  521 (885)
T ss_pred             HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            9999999999999999999987664433334444544   455569999999999999999988777542  22233333


Q ss_pred             HHHHh---cCCChHHHHHHHHHHHHHHHhhC----hhhhHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842          402 IVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQ---WLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (587)
Q Consensus       402 l~~~~---~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                      +...+   +.+|-.+   ...+++.++..+|    ...|.+.++|.++.   .++|.+.++ --.+++++.++..+|..|
T Consensus       522 l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF  597 (885)
T KOG2023|consen  522 LVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGF  597 (885)
T ss_pred             HHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccc
Confidence            32222   2233333   5566777776664    44566777777754   467776554 346677888888777653


Q ss_pred             --Hhh-------hhHHH----HHhhccC-----CchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChh
Q 007842          472 --AMQ-------HITPQ----VLEMINN-----PHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPN  529 (587)
Q Consensus       472 --~~~-------~l~~~----l~~~l~d-----~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~  529 (587)
                        +..       .++.+    +.....+     ++...-.+++..+..+++.+|...    ....++..+..+++|+.++
T Consensus       598 ~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~pe  677 (885)
T KOG2023|consen  598 LPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPE  677 (885)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChH
Confidence              111       12221    1111222     244556678888888888777532    3456888999999999999


Q ss_pred             HHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          530 IKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       530 vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      ||..+...+|-+.....+.  ...+.++|.+..=++-..-.|-.+|..|+|.++--+|
T Consensus       678 VRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g  735 (885)
T KOG2023|consen  678 VRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG  735 (885)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence            9999999999998776332  3445667776643333345789999999999987665

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.96  E-value=7.8e-25  Score=208.78  Aligned_cols=555  Identities=19%  Similarity=0.286  Sum_probs=381.0

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcH-HH-HHHHHHHhccc---c-ccCCC---
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EV-LLAMAEELGVF---I-PYVGG---   80 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~v-~~~~~~~l~~l---~-~~~~~---   80 (587)
                      +..++-.++++.+.-|..+++.|.+-+..+|+.-..+.++|.+.+ .++|.+ +. ...+-+.|-++   + +|+..   
T Consensus       365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv  444 (1172)
T KOG0213|consen  365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV  444 (1172)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence            677888899999999999999999999999999999999999987 455443 22 22333333222   2 22211   


Q ss_pred             --------cchHh-----hhHH-------------HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842           81 --------VEHAH-----VLLP-------------PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (587)
Q Consensus        81 --------~~~~~-----~l~~-------------~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  134 (587)
                              +++..     .++.             .+.-=+.+.|+.||+...++++.++.+++-    +.++||+..+|
T Consensus       445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkavc  520 (1172)
T KOG0213|consen  445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVC  520 (1172)
T ss_pred             EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHh
Confidence                    11110     0111             111112466788999999999999988874    45899999999


Q ss_pred             cCC-CCcchhhHHhhhHhhcCCCC---hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHH
Q 007842          135 AGE-WFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIF  207 (587)
Q Consensus       135 ~~~-~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l  207 (587)
                      .+. ++..|..++++...++...+   -.+...++.++..++.|.+..||..++.++..+++..++   +.+...+-|++
T Consensus       521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLw  600 (1172)
T KOG0213|consen  521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLW  600 (1172)
T ss_pred             ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            987 88889888887765544332   237788999999999999999999999999999998765   33434344443


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--------
Q 007842          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------  276 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--------  276 (587)
                      ...-+. ....-.+.+++++.++....++   .+...++-++.+-.+.++.+.+...++.+.+.|..-|-+.        
T Consensus       601 kgir~h-rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil  679 (1172)
T KOG0213|consen  601 KGIRQH-RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL  679 (1172)
T ss_pred             HHHHHc-cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence            332222 2222223334444443322221   0111122222222333333333333333333332211100        


Q ss_pred             ---------------------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-----------
Q 007842          277 ---------------------------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------  312 (587)
Q Consensus       277 ---------------------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------  312 (587)
                                                       ....++.-.+.-++|+.+..|+.++.+...+...+|           
T Consensus       680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~  759 (1172)
T KOG0213|consen  680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER  759 (1172)
T ss_pred             HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence                                             001122222333345555555555555555444333           


Q ss_pred             -------------------------------H--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc---chhHHH
Q 007842          313 -------------------------------P--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDATI  356 (587)
Q Consensus       313 -------------------------------~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~  356 (587)
                                                     .  ..+.+.+...+...++++++.||..++..++.++..+   +.+..+
T Consensus       760 lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m  839 (1172)
T KOG0213|consen  760 LIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLM  839 (1172)
T ss_pred             HHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence                                           2  2344555666667788999999999999988887654   566677


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh-
Q 007842          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-  432 (587)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-  432 (587)
                      .++--++...+..+.++|--..+.++..+...+|....   ...++|.+..++++.+.++...++..++.++.. |++. 
T Consensus       840 ~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v  918 (1172)
T KOG0213|consen  840 GHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYV  918 (1172)
T ss_pred             HHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccC
Confidence            78888889999999999999999999999988875532   256788888888999999999999999999865 3332 


Q ss_pred             ----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh
Q 007842          433 ----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       433 ----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                          ++..... ++.+|...+.++|.+|..++|.+.+..|+.    .++..+++.++..+.+.|.+..-+++-.++.+|+
T Consensus       919 ~aREWMRIcfe-LlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p  993 (1172)
T KOG0213|consen  919 SAREWMRICFE-LLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP  993 (1172)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc
Confidence                2332222 445667788999999999999999999985    4566666677777788888888899999998887


Q ss_pred             HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       509 ~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                          -.++|.+.+-..-|+.+|+..++++++.+.+..+..  ++.-.+.|.|...+.|.|..-|..|..++.-+
T Consensus       994 ----FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen  994 ----FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             ----hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence                357899998888999999999999999999988765  56678999999999999999999999887655

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.9e-25  Score=208.63  Aligned_cols=565  Identities=16%  Similarity=0.192  Sum_probs=387.8

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcH-----HHHHHHHHHhccccccCCC---cch
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-----EVLLAMAEELGVFIPYVGG---VEH   83 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~-----~v~~~~~~~l~~l~~~~~~---~~~   83 (587)
                      +..+..+...++-.|.-.-..+.+|+.. +.-..|.+++|.+.+.++..+     ....++.+.+...+..+..   ..-
T Consensus        93 s~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp  171 (885)
T KOG2023|consen   93 SECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRP  171 (885)
T ss_pred             HHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence            5566777778887877766666666544 345678899999988665433     3344444444443332221   234


Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (587)
                      ...++|-+.++.+++.|.+|.-|+.++.++...-...-  -...++..+..+.+|++..+|...|..+..+.+..++.  
T Consensus       172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~  251 (885)
T KOG2023|consen  172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV  251 (885)
T ss_pred             hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence            56678888889999999999999999998754333221  12335556667788889999999988887776654432  


Q ss_pred             -HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc----chhhhHHHHHHHHhh----------h-C----------
Q 007842          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLT----------Q-D----------  213 (587)
Q Consensus       160 -~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~l~----------~-d----------  213 (587)
                       +...++++.....+|.+..|.-.||+-.-.++..--.    ..+.+.++|++...+          + +          
T Consensus       252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre  331 (885)
T KOG2023|consen  252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE  331 (885)
T ss_pred             cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence             6788999999999999999999888888877765321    134556666654321          1 0          


Q ss_pred             -------------------------C----------chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHH
Q 007842          214 -------------------------D----------QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR  258 (587)
Q Consensus       214 -------------------------~----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR  258 (587)
                                               +          +++.|+-++.++..+++.++++ ..+.++|+++..+..+.|.||
T Consensus       332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vr  410 (885)
T KOG2023|consen  332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVR  410 (885)
T ss_pred             hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhh
Confidence                                     0          2678999999999999988876 688999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC---HHHHHHhHhHHHHHhccCCcH
Q 007842          259 YMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       259 ~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~  333 (587)
                      ++++-++|.+++.+-+...  ...++|+++.++.|..+-||...+.+|++++..+-   .+.+...++.-+.+.+-|++.
T Consensus       411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK  490 (885)
T KOG2023|consen  411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK  490 (885)
T ss_pred             hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence            9999999999987654332  23689999999999999999999999999888653   334445566666666779999


Q ss_pred             HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhc---CCChHHHHHHHHhhhhhhhhhc----hhhHHhhHHHHHHH
Q 007842          334 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVE  404 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~  404 (587)
                      +|+++|+.++..+-+..|.+.  +.+.++..+...++   ..+--+-.   .+++.++...|    ...+.+.++|.+.+
T Consensus       491 ~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~  567 (885)
T KOG2023|consen  491 KVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNKPAYIQILMPPLIE  567 (885)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCcHHHHHHhccHHHH
Confidence            999999999988876665532  23334333333332   22333333   34444444444    45667788887765


Q ss_pred             ---HhcCCChHHHHHHHHHHHHHHHhhChhh--hH----HHHHHHHHH---h----cCC-----CchHHHHHHHHHHHHH
Q 007842          405 ---LAEDRHWRVRLAIIEYIPLLASQLGVGF--FD----DKLGALCMQ---W----LQD-----KVYSIRDAAANNLKRL  463 (587)
Q Consensus       405 ---~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~----~~l~~~l~~---~----l~d-----~~~~vr~~a~~~l~~l  463 (587)
                         .++|++..+ --.+++++.++.++|..+  |.    +....++.+   .    -.|     ++.+.-..++..++-+
T Consensus       568 KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGL  646 (885)
T KOG2023|consen  568 KWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGL  646 (885)
T ss_pred             HHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHH
Confidence               456655443 346788888888876443  11    112222211   1    111     2233344577777778


Q ss_pred             HHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842          464 AEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       464 ~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~  537 (587)
                      ++.+|...    ....+...+...+.|+-+.||+.+...+|.+...+....  ....++|.+...++-..-.+-.+|+++
T Consensus       647 aegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WA  726 (885)
T KOG2023|consen  647 AEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWA  726 (885)
T ss_pred             HHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence            87776532    345678888889999999999999999999998763321  245677777777777788899999999


Q ss_pred             HHHhhhhhchHHHHhhHHHHHHH---hcC--CCCccHHHHHHHHHHHHHHh
Q 007842          538 LQSLIPIVDQSMVEKTIRPCLVE---LTE--DPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       538 l~~l~~~~~~~~~~~~i~~~l~~---l~~--d~d~~Vr~~a~~al~~l~~~  583 (587)
                      +|.++.+++.+.. ..+-|.+..   ..+  -.+..+-.+.+-.+|+++.+
T Consensus       727 iGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~  776 (885)
T KOG2023|consen  727 IGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI  776 (885)
T ss_pred             HHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc
Confidence            9999999887632 233333333   222  33446677777777777643

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-23  Score=201.26  Aligned_cols=525  Identities=17%  Similarity=0.203  Sum_probs=367.7

Q ss_pred             cHHHHHHHHHHhcccccc-CCCcchHhhhHHHHhhhhcchhhH-HHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc--
Q 007842           60 DDEVLLAMAEELGVFIPY-VGGVEHAHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA--  135 (587)
Q Consensus        60 ~~~v~~~~~~~l~~l~~~-~~~~~~~~~l~~~l~~l~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~--  135 (587)
                      ++.+...++++++.++.. +. ...++.+++.+...+.++.+. +++.++.+++.+++.++|+......-..+...+.  
T Consensus       103 ep~~~s~Aaq~va~IA~~ElP-~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm  181 (859)
T KOG1241|consen  103 EPRRPSSAAQCVAAIACIELP-QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM  181 (859)
T ss_pred             CCCccchHHHHHHHHHHhhCc-hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence            333444445555544431 11 234566777777766666665 9999999999999999998766655555544443  


Q ss_pred             ---CCCCcchhhHHhhhHhhcC----CCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHH
Q 007842          136 ---GEWFTARVSACGLFHIAYP----SAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIM  204 (587)
Q Consensus       136 ---~~~~~~r~~a~~~l~~~~~----~~~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~  204 (587)
                         .++..+|.+|...+.....    .+. +..++.++...++..+.++.+||.++.++|.+++.....   ....+.++
T Consensus       182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf  261 (859)
T KOG1241|consen  182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF  261 (859)
T ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2367789888887754332    222 347788999999999999999999999999999887532   12233356


Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhc---------------Ch------hhhhhchHHHHHHhcc-------CCcHH
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLL---------------EP------QDCVAHILPVIVNFSQ-------DKSWR  256 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---------------~~------~~~~~~l~~~l~~~~~-------d~~~~  256 (587)
                      ++......++++.|...+++.+..+++.-               +|      ....+.++|.+.+++.       |++|.
T Consensus       262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn  341 (859)
T KOG1241|consen  262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN  341 (859)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence            66666677888999999999999776531               11      0113357777766552       45799


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccCCcH
Q 007842          257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       257 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~  333 (587)
                      .-.+|..+|.-++...|++..+ +++|.+.+-++.++|.-|.+++-+++.+.+...+.   ...+..+|.+..+..|++-
T Consensus       342 p~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl  420 (859)
T KOG1241|consen  342 PAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL  420 (859)
T ss_pred             HHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence            9999999999999988877654 78999998999999999999999999998765443   3456778888999999999


Q ss_pred             HHHHHHHHHHHccccccch----hHHHHhHHHH----------------------------------------------H
Q 007842          334 HVRSALASVIMGMAPLLGK----DATIEQLLPI----------------------------------------------F  363 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~----------------------------------------------l  363 (587)
                      .||.+++++++.+++.++.    +.....+++.                                              +
T Consensus       421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii  500 (859)
T KOG1241|consen  421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAII  500 (859)
T ss_pred             hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHH
Confidence            9999999999998876531    1111112222                                              2


Q ss_pred             HHhhc-----C-CChHHHHHHHHhhhhhhhhhchh---------------------------------------------
Q 007842          364 LSLLK-----D-EFPDVRLNIISKLDQVNQVIGID---------------------------------------------  392 (587)
Q Consensus       364 ~~~l~-----d-~~~~vr~~a~~~l~~l~~~~~~~---------------------------------------------  392 (587)
                      -.+++     | ...+.|.++.++|..+++....+                                             
T Consensus       501 ~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq  580 (859)
T KOG1241|consen  501 GSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQ  580 (859)
T ss_pred             HHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence            22221     2 23567778888877776543211                                             


Q ss_pred             -----------hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhc-CCCchHHHHHHH
Q 007842          393 -----------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAA  457 (587)
Q Consensus       393 -----------~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~  457 (587)
                                 ...+.++..+..+++. .+..+...++.+++.++..+|+.+  +.+.+.|.+...+ +-.+..|-.+|+
T Consensus       581 ~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV  660 (859)
T KOG1241|consen  581 SIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV  660 (859)
T ss_pred             HHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence                       1112233333333343 233345556667777777777554  5678889888888 556788999999


Q ss_pred             HHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhc---CCC--
Q 007842          458 NNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS---KDR--  526 (587)
Q Consensus       458 ~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l---~d~--  526 (587)
                      ..+|.+++.++.++  +.+.++..|.+.+.+++  ..++-..+.++|.++-.+|.++  +.+.++|.+....   .|+  
T Consensus       661 glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~  740 (859)
T KOG1241|consen  661 GLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPAD  740 (859)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCc
Confidence            99999999988875  46788888888888874  5688889999999998888765  5777888877764   222  


Q ss_pred             ------ChhHHHHHHHHHHHhhhhhch-------HHHHhhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHhhcc
Q 007842          527 ------VPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELTEDPDV--DVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       527 ------~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~~d~d~--~Vr~~a~~al~~l~~~~~~  586 (587)
                            ...+|..++++...+...++.       ..+...++..+.+...|++-  .+-..|..-++.|+.+.|+
T Consensus       741 ~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~  815 (859)
T KOG1241|consen  741 DSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGK  815 (859)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHccc
Confidence                  346899999999888877663       14566777777777666654  4666777778888887763

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.94  E-value=8.5e-23  Score=191.28  Aligned_cols=556  Identities=17%  Similarity=0.242  Sum_probs=386.2

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcH-H-HHHHHHHHhcccc----ccCCC---
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFI----PYVGG---   80 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~-v~~~~~~~l~~l~----~~~~~---   80 (587)
                      +..++-.++++++.-|..+++.|.+-+..+|++...+.++|.+.+ .+++.+ + +...+-+.|-.+.    +|+..   
T Consensus       170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv  249 (975)
T COG5181         170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV  249 (975)
T ss_pred             HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence            456777899999999999999999999999999999999999987 455433 2 2233333332221    22110   


Q ss_pred             --------cchH-----hh-hHHH------------HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842           81 --------VEHA-----HV-LLPP------------LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (587)
Q Consensus        81 --------~~~~-----~~-l~~~------------l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  134 (587)
                              ++..     .. +..+            +.-=+.+.|+.||+...++.+.++++++-    +.++|++..++
T Consensus       250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c  325 (975)
T COG5181         250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALC  325 (975)
T ss_pred             EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHh
Confidence                    0000     00 1111            11112467889999999999999999885    45899999999


Q ss_pred             cCC-CCcchhhHHhhhHhhcCCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHH
Q 007842          135 AGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIF  207 (587)
Q Consensus       135 ~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l  207 (587)
                      .+. ++..|..++.+...++..++.   .+...++..+..++.|.+..||..++.++..+++..++   +.+...+-|++
T Consensus       326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw  405 (975)
T COG5181         326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLW  405 (975)
T ss_pred             cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            987 888888888877666554432   36678889999999999999999999999999998876   33444444544


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhc----------------------cCCcHHHHHHHH
Q 007842          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFS----------------------QDKSWRVRYMVA  262 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~----------------------~d~~~~vR~~a~  262 (587)
                      ....+... .+-.+.+++.+.+...+.++   ........++...+                      .+.-|..|....
T Consensus       406 ~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~  484 (975)
T COG5181         406 EGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVS  484 (975)
T ss_pred             HHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhc
Confidence            43333222 22223333443333333321   01111122222222                      233344443322


Q ss_pred             -HHHHHHHHH--hC----------------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------
Q 007842          263 -NQLYELCEA--VG----------------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------  313 (587)
Q Consensus       263 -~~l~~~~~~--~~----------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------  313 (587)
                       +.+..+...  .+                +......+..-+++.++|+....|+.++.+...+...+|.          
T Consensus       485 pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleer  564 (975)
T COG5181         485 PEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEER  564 (975)
T ss_pred             HHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHH
Confidence             111211111  00                0011234556666677787777777777776666555441          


Q ss_pred             ----------------------------------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc---cchhHHH
Q 007842          314 ----------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATI  356 (587)
Q Consensus       314 ----------------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~---~~~~~~~  356 (587)
                                                        ..+...++..+..++.++.+.||..++..++.++..   +|....+
T Consensus       565 l~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l  644 (975)
T COG5181         565 LYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKEL  644 (975)
T ss_pred             HHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                                              123345666677888999999999999888777654   4666677


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh----C
Q 007842          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL----G  429 (587)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~----~  429 (587)
                      .++-.++...+....++|--..++++..+....+...+   ...++|.+..++.+++.++....+..++.++..-    |
T Consensus       645 ~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~  724 (975)
T COG5181         645 AKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG  724 (975)
T ss_pred             HHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC
Confidence            78888899999999999999999999999887764421   2467888888888999999999999999988642    3


Q ss_pred             hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842          430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (587)
Q Consensus       430 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~  509 (587)
                      ...+...... ++..|...+.++|.+|..++|.+.+..|+.    .++..+++.++..+.+.|.+..-+++-.++.+|+ 
T Consensus       725 ~rEWMRIcfe-Lvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-  798 (975)
T COG5181         725 VREWMRICFE-LVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-  798 (975)
T ss_pred             HHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-
Confidence            3333333333 445667889999999999999999999985    4566667777777888899999999999999997 


Q ss_pred             HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                         -.++|.+..-..-|+.+|+..++++++.+.+..+..  ++.-.+.|.|...+.|.|+.-|..|...+.-+
T Consensus       799 ---fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl  868 (975)
T COG5181         799 ---FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL  868 (975)
T ss_pred             ---hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence               467899998888999999999999999999988775  56778999999999999999999998876544

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.93  E-value=8.9e-22  Score=192.99  Aligned_cols=570  Identities=14%  Similarity=0.160  Sum_probs=402.0

Q ss_pred             HHHHHhcCccHHHHHHHhhcHHH----HHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842           13 VLIDELKNDDIQLRLNSIRRLST----IARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (587)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~----~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l   87 (587)
                      .|++.|.|.|.+-|++|...|.+    -...++.+... .++..+.+.+ |.+.||+..+.+|+|-++..++ +.....+
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~-kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk-e~~le~~   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSER-KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK-EDQLETI   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchh-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch-HHHHHHH
Confidence            78999999999999999776653    33444444443 4455554544 5678999999999999987776 3556666


Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHHhc--CCCCcchhhHHhhhHhhcCCCC-
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAA--GEWFTARVSACGLFHIAYPSAP-  157 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~--~~~~~~r~~a~~~l~~~~~~~~-  157 (587)
                      ..-|..-.-+.....|+-+.-.|..+..+++|       ..+.+.+.|.+.....  .+.+..+..++.+++....+.+ 
T Consensus        87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~  166 (1233)
T KOG1824|consen   87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT  166 (1233)
T ss_pred             HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence            66655554467788899999999998888876       2334556666654433  3466688888888876544433 


Q ss_pred             --hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842          158 --DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       158 --~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                        ++....++..+...+..+...||+.++.+++.++...+.+.+...+..++..+-+......-+..+++++.++...+.
T Consensus       167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence              346777888888778888899999999999999999977767666666666666666665566788899999888776


Q ss_pred             --hhhhhchHHHHHHhc---cCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhc-------------------
Q 007842          236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLL-------------------  289 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~l-------------------  289 (587)
                        ....+.+.|.+.+.+   +..+.+.|+..+++++.+....+.+..+  +.++....+.+                   
T Consensus       247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~  326 (1233)
T KOG1824|consen  247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL  326 (1233)
T ss_pred             hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence              345778999999988   6677899999999999999887654322  23333333322                   


Q ss_pred             -------------C--CChHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-
Q 007842          290 -------------R--DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-  351 (587)
Q Consensus       290 -------------~--d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-  351 (587)
                                   .  |-.|.||++|++++..+.....+  ..+...+-|.+...+++....|+.-.+.++..+....+ 
T Consensus       327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP  406 (1233)
T ss_pred             hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence                         1  12488999999999988764332  14556777888888888888888877766554432211 


Q ss_pred             -------hh-----------H----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHHHHHHhc
Q 007842          352 -------KD-----------A----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAE  407 (587)
Q Consensus       352 -------~~-----------~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~  407 (587)
                             .+           .    ....++..+.+.+++.+...|..++..|..++..+..  .+....++|.+...+.
T Consensus       407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~  486 (1233)
T KOG1824|consen  407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN  486 (1233)
T ss_pred             CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence                   00           0    1234455555666666666777788877777765532  2334677888888888


Q ss_pred             CCC--hHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---------HHHh
Q 007842          408 DRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EWAM  473 (587)
Q Consensus       408 ~~~--~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~  473 (587)
                      |.+  ...+..++..+..+....+++.|.+   .+.|.+.....|+-+.+-..|+.+.+.+++.+.+         ..+.
T Consensus       487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v  566 (1233)
T KOG1824|consen  487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV  566 (1233)
T ss_pred             CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence            765  4456666666666555567777764   4677788889999999999999999999986533         2234


Q ss_pred             hhhHHHHHhh--ccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh---hc
Q 007842          474 QHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VD  546 (587)
Q Consensus       474 ~~l~~~l~~~--l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~---~~  546 (587)
                      ..++....+.  .+|.+..||+.|+.++|.+...+|...  ..+.++|.+.+.++  +...|..+++++.-|+..   +.
T Consensus       567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~  644 (1233)
T KOG1824|consen  567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDID  644 (1233)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceee
Confidence            5555555554  467789999999999999998888421  35667777777765  577899999999998764   22


Q ss_pred             hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          547 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       547 ~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .......++|.+...+.-.....|.....++.++.+..++
T Consensus       645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~  684 (1233)
T KOG1824|consen  645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSD  684 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2345566777777766655666777778888877775543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.93  E-value=7.5e-21  Score=181.90  Aligned_cols=544  Identities=16%  Similarity=0.138  Sum_probs=384.3

Q ss_pred             cCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhc-cC-CcHHHHHHHHHHhccccccCCC--cchHhhhHHHHhhh
Q 007842           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-ND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETL   94 (587)
Q Consensus        19 ~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~-~~~~v~~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l   94 (587)
                      .+.|+=+|.-..++++..+.++|-+    .++|||... -+ .+.+.|..-.++..+++-+.|.  -.|...++.++++.
T Consensus       486 dn~deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g  561 (1172)
T KOG0213|consen  486 DNKDEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG  561 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence            3567889999999999999998855    789999873 33 3567676666666555544443  23667788999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHHH
Q 007842           95 CTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSI  167 (587)
Q Consensus        95 ~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~  167 (587)
                      +.|+...||.-++.++..+++...|-   .+...+.|+......+-. ..-.+.++.++.+++...++    +-.+++-+
T Consensus       562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmli  640 (1172)
T KOG0213|consen  562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLI  640 (1172)
T ss_pred             hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence            99999999999999999999887663   444445666554443321 11233445566666666554    23344455


Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhccch--hhhHHHH---------------------------------------H
Q 007842          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMS---------------------------------------I  206 (587)
Q Consensus       168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~---------------------------------------~  206 (587)
                      +..-.++++.+.++.++..+...+..-+-+.  ....++|                                       -
T Consensus       641 l~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R  720 (1172)
T KOG0213|consen  641 LIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSR  720 (1172)
T ss_pred             HHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHH
Confidence            5555667777777777776666665544211  0011111                                       1


Q ss_pred             HHHhhhCCchhHHHHHHHHHHHHhhhcC------------------------------------------h--hhhhhch
Q 007842          207 FEDLTQDDQDSVRLLAVEGCAALGKLLE------------------------------------------P--QDCVAHI  242 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~------------------------------------------~--~~~~~~l  242 (587)
                      +..-+.|+.+..|+...+....+...++                                          .  ..+.+.+
T Consensus       721 ~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi  800 (1172)
T KOG0213|consen  721 VVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQI  800 (1172)
T ss_pred             HhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHH
Confidence            1111245555566666555555443322                                          1  1123345


Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---H
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---A  316 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~  316 (587)
                      ...+...++++++.||..|+..++.++..+...   ....++--++.+.++.+.++|--..+.++..+...+|-..   -
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP  880 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP  880 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence            555666778899999999999999888765433   2233455567788888889999888888888888776431   2


Q ss_pred             HHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc----chhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (587)
                      ...++|.+...+++.+..|...++..++.++..-    +..+++..-. -++.+|+..+.++|.++.++++.+++.+|+.
T Consensus       881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIGPq  959 (1172)
T KOG0213|consen  881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ  959 (1172)
T ss_pred             hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence            3567888888899999999999999999987643    2333332222 3556778888999999999999999999987


Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH--
Q 007842          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--  470 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--  470 (587)
                      ..    +..+.+-++..+...|....-+++.+++..|+-    .++|.+++--..++..|+...+++++.+++..|.-  
T Consensus       960 dV----LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  960 DV----LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             HH----HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence            54    444555455555566666666677777777653    26788888788899999999999999999987753  


Q ss_pred             HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc---ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       471 ~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                      .+...+.|.+.+.+.|.+...|+.|..++.+++-   .+|.+...-+++..+....-+++|.|..+...++..+...+|+
T Consensus      1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred             hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence            3567789999999999999999999999999975   4556666778888888888899999999999999999999888


Q ss_pred             HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          548 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       548 ~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                      ..+...++    +-+-.+...||..-.+.+..+
T Consensus      1112 ~~~~~Y~~----QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1112 QAMLKYCL----QGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             HHHHHHHH----HhccCcHHHHHHHHHHHHHhH
Confidence            76555444    445778888988888777665

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=3.1e-21  Score=210.33  Aligned_cols=561  Identities=13%  Similarity=0.129  Sum_probs=400.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChH---hhhhhhhhhhhhccC--CcHHHHHHHHHHhccccccCCCcchH
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE---RTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGVEHA   84 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~---~~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~   84 (587)
                      -+..|++.++++++..+..|+..+..++...+..   -.....+|.+.+.++  ++..+|..++.+|++++.  ++.++.
T Consensus       190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs--~s~e~r  267 (2102)
T PLN03200        190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSS--QSKEAK  267 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhc--CCHHHH
Confidence            4678899999999999999988776665432211   122366888888664  345889999999988875  333333


Q ss_pred             hh-----hHHHHhhhhcchh---------hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhh
Q 007842           85 HV-----LLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF  149 (587)
Q Consensus        85 ~~-----l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l  149 (587)
                      ..     -+|.|..++..+.         ...++.|..+|++++...      ..++|++.++.++. +......++..+
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL  341 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL  341 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence            22     2344444444333         446899999999999765      34778887777654 222233455555


Q ss_pred             HhhcC---CCChHHH----HHHHHHHHHhcCCCChH-HHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHH
Q 007842          150 HIAYP---SAPDILK----TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVR  219 (587)
Q Consensus       150 ~~~~~---~~~~~~~----~~l~~~l~~l~~d~~~~-vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr  219 (587)
                      ..+..   ...+..+    ..+.+.|.+++.++++. ++..+..+|..+.....-  -.......+.+..++...+..++
T Consensus       342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ  421 (2102)
T PLN03200        342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ  421 (2102)
T ss_pred             HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence            55422   2222111    23457888999988776 477777777553332110  01223456677888888888999


Q ss_pred             HHHHHHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCh
Q 007842          220 LLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE  293 (587)
Q Consensus       220 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~  293 (587)
                      ..++..+..++..-..   .......+|.+.+++.+++..+|..++..++.++..-..   .......+|.+.+++.+++
T Consensus       422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~  501 (2102)
T PLN03200        422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS  501 (2102)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            9999999998865222   122334688999999988999999999999988752211   1123468999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhhCH-HH-H-HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC
Q 007842          294 AEVRIAAAGKVTKFCRILNP-EL-A-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~-~~-~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  370 (587)
                      ..+|+.|+.+++.++..-.+ .. + ....+|.+.+++++.++++|..+++++.++...-..+     .++.+..++..+
T Consensus       502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsd  576 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGD  576 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCC
Confidence            99999999999999873211 11 2 2357888999999999999999999999986543222     336677788888


Q ss_pred             ChHHHHHHHHhhhhhhhhhchhhH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHH
Q 007842          371 FPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALC  441 (587)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~~~~~------~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l  441 (587)
                      ++.++..++..++.+......+..      ....+|.+.+++++++.+++..++..+..++..-.   ........+|.+
T Consensus       577 d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPL  656 (2102)
T PLN03200        577 LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPC  656 (2102)
T ss_pred             ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence            899999999999888765443321      13578999999999999999999999988875321   112334567888


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--HHHhhH
Q 007842          442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRL  515 (587)
Q Consensus       442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i  515 (587)
                      +.++.+.+..+|..++.+|+.+......+.    .....+|.+.+++++++..++..++.++.+++..-...  ......
T Consensus       657 V~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~  736 (2102)
T PLN03200        657 IKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI  736 (2102)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence            999999999999999999999996333221    23558899999999999999999999999998754322  234667


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHH------HHhhHHHHHHHhcCCCCccHHHH--HHHHHHHHHHh
Q 007842          516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM------VEKTIRPCLVELTEDPDVDVRFF--ATQAIQSIDHV  583 (587)
Q Consensus       516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~i~~~l~~l~~d~d~~Vr~~--a~~al~~l~~~  583 (587)
                      ++.+.+++++.++.+|.+++.+|.+++...+.++      .....+..|..+++-.|.++-..  |..+|..+.+.
T Consensus       737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~  812 (2102)
T PLN03200        737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART  812 (2102)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence            8999999999999999999999999998876543      22345666777777777766655  88888888774

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=6e-21  Score=208.15  Aligned_cols=563  Identities=13%  Similarity=0.098  Sum_probs=391.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHh------hhhhhhhhhhhccCCc---H-HHHHHHHHHhccccccCC
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER------TRKELIPFLSENNDDD---D-EVLLAMAEELGVFIPYVG   79 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~------~~~~l~p~l~~~~~~~---~-~v~~~~~~~l~~l~~~~~   79 (587)
                      .+..|++-|++++++.|..|+..|..++..-..+.      .....+|.|...+.+.   + -++..++.+|.+++..-+
T Consensus       100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e  179 (2102)
T PLN03200        100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD  179 (2102)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence            46778899999999999999999999875321121      1246688887755432   2 244555667777765322


Q ss_pred             Ccc---hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh---hhHHhhHHHHHHHHhcC-CCCcchhhHHhhhHhh
Q 007842           80 GVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIA  152 (587)
Q Consensus        80 ~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~  152 (587)
                      +..   .....+|.+..++.++++.++..|..++..++...+.   ..+....+|.+.+++.+ ++..+|..|+..++.+
T Consensus       180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL  259 (2102)
T PLN03200        180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL  259 (2102)
T ss_pred             chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            110   1123678888888899999999999999888765432   22345578888888865 4557888899888888


Q ss_pred             cCCCChH----HHHHHHHHHHHhcCCCC---------hHHHHHHHHhHHHHHHhhccchhhhHHHHH-------------
Q 007842          153 YPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEPAHLKTDIMSI-------------  206 (587)
Q Consensus       153 ~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-------------  206 (587)
                      +.+.++.    .....+|.|..++..++         ...++.+.-+|++++...      ..+++.             
T Consensus       260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~  333 (2102)
T PLN03200        260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAP  333 (2102)
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHH
Confidence            8764322    22345677777766554         345888888888887642      112222             


Q ss_pred             ---------------------------------HHHhhhCCchh-HHHHHHHHHHHHhhhcC--hhhhhhchHHHHHHhc
Q 007842          207 ---------------------------------FEDLTQDDQDS-VRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFS  250 (587)
Q Consensus       207 ---------------------------------l~~l~~d~~~~-vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~  250 (587)
                                                       +..++.+.++. +...+..+|..+.....  .-.......+.+..++
T Consensus       334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL  413 (2102)
T PLN03200        334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI  413 (2102)
T ss_pred             HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence                                             22333322221 12222222222111000  0001122344455556


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHH
Q 007842          251 QDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCV  324 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l  324 (587)
                      ...+..+|..++.++..++..-.+   .......+|.+++++++.+..+|..++..++.++..-...   ......+|.+
T Consensus       414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L  493 (2102)
T PLN03200        414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL  493 (2102)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            666678999999998887743110   1122347899999999999999999999999987633221   2234678999


Q ss_pred             HHhccCCcHHHHHHHHHHHHccccccch-hH-H-HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          325 KELSSDSSQHVRSALASVIMGMAPLLGK-DA-T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      .+++..++..+|..+++++++++..-.. .. . ....+|.+.+++++.++.++..++.+|..+...-..     ..++.
T Consensus       494 V~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~  568 (2102)
T PLN03200        494 VQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQ  568 (2102)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHH
Confidence            9999999999999999999999863211 11 2 235788899999999999999999999999765332     23466


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhh-h-----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHH
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF-F-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWA  472 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~  472 (587)
                      +..++..++..++..++..++.+........ .     ....+|.+..++.+++..++..|+.++..++..-..   ...
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv  648 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA  648 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            7777888888888888998888866443221 1     123678899999999999999999999999863211   224


Q ss_pred             hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       473 ~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      ....+|.++.++.+.+..+|..+.++|+++........    ....++|.+.+++++++..++..++.+|.++...-...
T Consensus       649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~  728 (2102)
T PLN03200        649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA  728 (2102)
T ss_pred             HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence            46788999999999999999999999999986433322    24568999999999999999999999999998764332


Q ss_pred             --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          549 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       549 --~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                        ......+|.|.+++.+..+.+|..|+.||..+++.
T Consensus       729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence              34467789999999999999999999999998864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.9e-20  Score=176.91  Aligned_cols=566  Identities=15%  Similarity=0.123  Sum_probs=394.7

Q ss_pred             HHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--C-CcHHHHHHHHHHhccccccCCCcc-------
Q 007842           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--D-DDDEVLLAMAEELGVFIPYVGGVE-------   82 (587)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~-~~~~v~~~~~~~l~~l~~~~~~~~-------   82 (587)
                      .+++..-|+|...|..|...|...+....     ..++..+.+.+  + +.+..|..++-.|.+-... ..++       
T Consensus         5 ~~le~tlSpD~n~~~~Ae~~l~~~~~~nf-----~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a-kd~~~k~~~~q   78 (859)
T KOG1241|consen    5 ELLEKTLSPDQNVRKRAEKQLEQAQSQNF-----PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA-KDPERKQQYQQ   78 (859)
T ss_pred             HHHHHHcCCCcchHHHHHHHHHHHHhccH-----HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc-CCHHHHHHHHH
Confidence            45566889999999999999987664322     23333344422  2 3445666666666442210 1111       


Q ss_pred             --------hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhc
Q 007842           83 --------HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAY  153 (587)
Q Consensus        83 --------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~  153 (587)
                              ....+-..+..-+..++|..+..|..+++.++..--|...+..+++.+.+-..++ ....|..++..+|.++
T Consensus        79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic  158 (859)
T KOG1241|consen   79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC  158 (859)
T ss_pred             HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence                    2233444555566788999999999999999876555555666666665544443 4468888999999999


Q ss_pred             CCCChH----HHHHHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhh----ccchhhhHHHHHHHHhhhCCchhHHHHHH
Q 007842          154 PSAPDI----LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATV----EPAHLKTDIMSIFEDLTQDDQDSVRLLAV  223 (587)
Q Consensus       154 ~~~~~~----~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~l~~d~~~~vr~~a~  223 (587)
                      ++.+|+    ..+.++..+.+..  ..++..||-++..+|..-....    ..+.-.++++.......+.++..++.+|.
T Consensus       159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~  238 (859)
T KOG1241|consen  159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF  238 (859)
T ss_pred             ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence            999986    2344555555443  4567889999888877754443    33555667777777777888889999999


Q ss_pred             HHHHHHhhhcChh--h-hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------hCC---Ccc-----------cc
Q 007842          224 EGCAALGKLLEPQ--D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-------VGP---EPT-----------RM  279 (587)
Q Consensus       224 ~~l~~l~~~~~~~--~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~-------~~~---~~~-----------~~  279 (587)
                      .+|..|.......  . ..+.++++-...+..++..|...+++....++..       .++   ...           ..
T Consensus       239 ~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~  318 (859)
T KOG1241|consen  239 QCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ  318 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh
Confidence            9999988654331  1 1233566666677788999999999999988752       111   111           12


Q ss_pred             chHHHHHHhcC-------CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch
Q 007842          280 DLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK  352 (587)
Q Consensus       280 ~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      .++|.+++++.       |++|..-++|-.+|.-++..++.+.. +.++|++.+.+++++|+-|.+++.+++.+-....+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            68898888773       34699999999999999998887654 79999999999999999999999999988765544


Q ss_pred             hH---HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007842          353 DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       353 ~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~  425 (587)
                      ..   .....+|.+..++.|++-.||..+.++++++++.+...    .+...+++.+.+-++| .+++-..++.++..++
T Consensus       398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA  476 (859)
T ss_pred             hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence            32   45677899999999999999999999999999876533    3344555555555444 5778788888888777


Q ss_pred             HhhC---h--------hhhHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHHHHHhChHHH------hhhhHHHHHhhcc
Q 007842          426 SQLG---V--------GFFDDKLGALCMQWLQ--D-KVYSIRDAAANNLKRLAEEFGPEWA------MQHITPQVLEMIN  485 (587)
Q Consensus       426 ~~~~---~--------~~~~~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~  485 (587)
                      +...   +        ..|.+.++..++....  | +..+.|.+|..+|+++++....+.+      ...++..+-+.+.
T Consensus       477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~  556 (859)
T KOG1241|consen  477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS  556 (859)
T ss_pred             HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5431   1        1133344444444332  3 5678999999999999987655421      1112222222222


Q ss_pred             -----CC----chhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH--HHH
Q 007842          486 -----NP----HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS--MVE  551 (587)
Q Consensus       486 -----d~----~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~--~~~  551 (587)
                           -.    -..+.-..+..|+.+...++++.  ..+.++..+++.++. ++..+...+.-+++.++..+|..  .+.
T Consensus       557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym  636 (859)
T KOG1241|consen  557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM  636 (859)
T ss_pred             HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH
Confidence                 11    12344456667777776666543  568899999999887 57778999999999999998876  577


Q ss_pred             hhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          552 KTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       552 ~~i~~~l~~-l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +.+.|.|.. +.+-.+..|-..|..-.+.++.-+++
T Consensus       637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~  672 (859)
T KOG1241|consen  637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED  672 (859)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            889999988 55888999999999999999988764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.91  E-value=2.9e-20  Score=191.40  Aligned_cols=503  Identities=16%  Similarity=0.169  Sum_probs=356.5

Q ss_pred             HHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhc-cCCcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842           14 LIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (587)
Q Consensus        14 l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~   90 (587)
                      +.+.+.+.  +...|..++..+-.+ ...|.+..  ...+-+.+. ..++.+.++...-.+..+..  .+++......+.
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~-~~~G~~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~~~~~l~~n~   83 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYL-MMLGYDIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLH--EDPELLILIINS   83 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHH-HHTT---G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTT--TSHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCCCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--cchhHHHHHHHH
Confidence            34444444  777777777777654 34564432  333333332 23445555555545544443  223333444555


Q ss_pred             HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHH
Q 007842           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (587)
Q Consensus        91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (587)
                      +.+-+.++++.+|-.|+++++.+.                                          .++..+.+.+.+..
T Consensus        84 l~kdl~~~n~~~~~lAL~~l~~i~------------------------------------------~~~~~~~l~~~v~~  121 (526)
T PF01602_consen   84 LQKDLNSPNPYIRGLALRTLSNIR------------------------------------------TPEMAEPLIPDVIK  121 (526)
T ss_dssp             HHHHHCSSSHHHHHHHHHHHHHH-------------------------------------------SHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCHHHHHHHHhhhhhhc------------------------------------------ccchhhHHHHHHHH
Confidence            555566777777777777777764                                          13344556777778


Q ss_pred             hcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHH
Q 007842          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIV  247 (587)
Q Consensus       171 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~  247 (587)
                      ++.|++|.||+.|+.++..+....++ .....+.+.+..++.|.++.|+.+|+..+..+  ...+.   ...+.+...+.
T Consensus       122 ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~  198 (526)
T PF01602_consen  122 LLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILC  198 (526)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhh
Confidence            88899999999999999999988532 22222789999999999999999999999888  22332   23445566666


Q ss_pred             HhccCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHH
Q 007842          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  325 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~  325 (587)
                      +.+.+.++..+...++.+..++..-  ....  ..+++.+..++.+.++.|+..++.++..+...   ......+++.+.
T Consensus       199 ~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~  273 (526)
T PF01602_consen  199 QLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLI  273 (526)
T ss_dssp             HHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHH
T ss_pred             hcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHH
Confidence            6668888889888888887654321  1112  45888888888888899999999888866542   235577889999


Q ss_pred             HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHH
Q 007842          326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (587)
Q Consensus       326 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~  405 (587)
                      +++.++++.+|..++..+..++...++...  .....+..+..+++..+|..++..+..++..-.    ...+++.+...
T Consensus       274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~  347 (526)
T PF01602_consen  274 KLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKY  347 (526)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHH
T ss_pred             HHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHH
Confidence            999999999999999999999876522221  333334444558889999999999988876332    34577777777


Q ss_pred             hc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc
Q 007842          406 AE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI  484 (587)
Q Consensus       406 ~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  484 (587)
                      +. ..+..+|..++..++.++......  .+.+++.++.++......+...++..+..+.......  ...++..+.+.+
T Consensus       348 l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l  423 (526)
T PF01602_consen  348 LSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELL  423 (526)
T ss_dssp             HHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHH
T ss_pred             HHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHH
Confidence            74 447889999999999999877442  4567788888888888888999999998888764332  345677777766


Q ss_pred             cC-CchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc
Q 007842          485 NN-PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT  562 (587)
Q Consensus       485 ~d-~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~  562 (587)
                      .+ .++..+..+++.+|..+...+. . ....++..+.+...+.++.+|..++.++.++....+.....+.+.+.+..+.
T Consensus       424 ~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~  502 (526)
T PF01602_consen  424 EDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLA  502 (526)
T ss_dssp             TSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHH
T ss_pred             HHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHh
Confidence            65 5678999999999999987765 2 4567788888888888999999999999999988776555568888888888


Q ss_pred             C--CCCccHHHHHHHHHHHHHH
Q 007842          563 E--DPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       563 ~--d~d~~Vr~~a~~al~~l~~  582 (587)
                      +  |.+.+||.+|..-+.-+..
T Consensus       503 ~~~s~~~evr~Ra~~y~~ll~~  524 (526)
T PF01602_consen  503 TEDSSDPEVRDRAREYLRLLNS  524 (526)
T ss_dssp             HHS-SSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHcc
Confidence            7  8899999999988776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.1e-19  Score=172.97  Aligned_cols=518  Identities=17%  Similarity=0.153  Sum_probs=370.0

Q ss_pred             hhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHH
Q 007842           50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYI  127 (587)
Q Consensus        50 ~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  127 (587)
                      ++++.. -.|....++..+.+.........| .+....+.|.+++.+. ..+..+|+......+.++.++...+  ....
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~-~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d--~~~~   95 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHG-DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVD--PRPI   95 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccC--cchh
Confidence            455544 334455677777666544444334 4566778888877664 5688899999988888888876433  2233


Q ss_pred             HHHHHHh---cCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchh-hhHH
Q 007842          128 PLVKRLA---AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDI  203 (587)
Q Consensus       128 ~~l~~l~---~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l  203 (587)
                      +++..+.   +.+...++.+...++..............+.+.+.++++.....-|..+...+..+....+.+.. ...+
T Consensus        96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~  175 (569)
T KOG1242|consen   96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF  175 (569)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence            3333333   33455556555555554444443445567777888888888888888888888888877654332 3446


Q ss_pred             HHHHHHhhhCCch-hHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc
Q 007842          204 MSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (587)
Q Consensus       204 ~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~  280 (587)
                      +.-+.....|... ..|..+..+.......+++  +.+.-.++|.+.....|....||..+..+...+...+.....+ .
T Consensus       176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~  254 (569)
T KOG1242|consen  176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-L  254 (569)
T ss_pred             HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-H
Confidence            6677777778765 4455566666666666654  3345556777788888999999999999999999888766544 4


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  358 (587)
                      ++|.++.-+.+..|..+.+++..++.++...+..  ...+.++|.+.+.+.|.+++||.++.+++.++++...... ...
T Consensus       255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~  333 (569)
T KOG1242|consen  255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK  333 (569)
T ss_pred             hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence            5555555555558999999999999888776553  5678899999999999999999999999999998886655 567


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhh--hhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhh
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGF  432 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~  432 (587)
                      ++|.+...+.|....+.... ..|+  .+...+.... ...++|.+..-+.+.+..++..++..++.++..+.    ...
T Consensus       334 ~ip~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~ps-LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap  411 (569)
T KOG1242|consen  334 IIPTLLDALADPSCYTPECL-DSLGATTFVAEVDAPS-LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP  411 (569)
T ss_pred             HHHHHHHHhcCcccchHHHH-Hhhcceeeeeeecchh-HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence            89999999999875554332 2222  2233333333 36788999998899888888888999999888773    233


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChHHH
Q 007842          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT  511 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~~~  511 (587)
                      |.+.++|-+...+.|..++||..+..+++.+.+..|...+ +..+|.+.+...+. ....|..+...++......|.+. 
T Consensus       412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-  489 (569)
T KOG1242|consen  412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-  489 (569)
T ss_pred             hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-
Confidence            5677888888888999999999999999999999988766 78899999887665 45688999999999998888764 


Q ss_pred             HhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhch--HHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007842          512 CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQA  576 (587)
Q Consensus       512 ~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~d~~Vr~~a~~a  576 (587)
                      ...++|.++......  ++.+|...+..+..+-...+.  +.+...+++.+.+-+.|.|+.+|..+.++
T Consensus       490 ~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~  558 (569)
T KOG1242|consen  490 VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA  558 (569)
T ss_pred             HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence            456677666654433  455787777666554333332  24556667766676679999998887765

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.90  E-value=5.3e-19  Score=173.84  Aligned_cols=575  Identities=14%  Similarity=0.198  Sum_probs=386.2

Q ss_pred             CCCccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHH----HHhccccccC
Q 007842            5 DEPLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMA----EELGVFIPYV   78 (587)
Q Consensus         5 ~~~~~~-~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~----~~l~~l~~~~   78 (587)
                      |||.-. +..+++.|.+.+.++..-|++.++-++.+++.++.. .++.-+-. .+...+.-|...+    -..+++.+..
T Consensus        42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~  120 (1233)
T KOG1824|consen   42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS  120 (1233)
T ss_pred             ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence            344442 678899999999999999999999998888877654 33322221 1222222221111    1234454433


Q ss_pred             CC---cchHhhhHHHHhhhhc--chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHh
Q 007842           79 GG---VEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHI  151 (587)
Q Consensus        79 ~~---~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~  151 (587)
                      ++   ....+.+.|.+.+.+.  .+...++-.++..++.+...++.-  .+...++..+..-..+.-..+|..++..++.
T Consensus       121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~  200 (1233)
T KOG1824|consen  121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH  200 (1233)
T ss_pred             ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence            32   1223445555544432  233448888888888776665531  1333344444333344456788889999999


Q ss_pred             hcCCCChHHHHHHHHH-HHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhh---hCCchhHHHHHHHH
Q 007842          152 AYPSAPDILKTELRSI-YTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLT---QDDQDSVRLLAVEG  225 (587)
Q Consensus       152 ~~~~~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~---~d~~~~vr~~a~~~  225 (587)
                      +...++.+...+++.- +..+-+...+..-+...++++.++...|..  ...+.+.|.+.+.+   +.++++.|..++++
T Consensus       201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa  280 (1233)
T KOG1824|consen  201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA  280 (1233)
T ss_pred             HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence            9998888755555554 445555555555666788899998887763  46677889988888   66778999999999


Q ss_pred             HHHHhhhcChh--hhhhchHHHHHHhc----------------------------------cCCcHHHHHHHHHHHHHHH
Q 007842          226 CAALGKLLEPQ--DCVAHILPVIVNFS----------------------------------QDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       226 l~~l~~~~~~~--~~~~~l~~~l~~~~----------------------------------~d~~~~vR~~a~~~l~~~~  269 (587)
                      +..+...++.+  .+++.+...+.+.+                                  .|-+|.||++|++++..+.
T Consensus       281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I  360 (1233)
T KOG1824|consen  281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI  360 (1233)
T ss_pred             HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence            99999888764  23444444443322                                  1237999999999999887


Q ss_pred             HHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------H-----------H----HHHhHhHHH
Q 007842          270 EAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------E-----------L----AIQHILPCV  324 (587)
Q Consensus       270 ~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~-----------~----~~~~i~~~l  324 (587)
                      ....+  ....+.+-|.++..+++.+.+|+.-.+.++-.+....++        +           .    -...++..+
T Consensus       361 sSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai  440 (1233)
T KOG1824|consen  361 SSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAI  440 (1233)
T ss_pred             hccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHH
Confidence            64322  112345677788888999999999999888877765431        0           1    123455555


Q ss_pred             HHhccCCcHHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhH---Hhh
Q 007842          325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLL---SQS  397 (587)
Q Consensus       325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~  397 (587)
                      .+.+.+++...|..++..+..+....+.  ......++|.+...+.|.+  ...+..++..+.......+++.+   .+.
T Consensus       441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~  520 (1233)
T KOG1824|consen  441 QKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSA  520 (1233)
T ss_pred             HHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhh
Confidence            5666666767788888877777655432  2345678899998898864  45666677766666666665543   345


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---------hhhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHH
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VGFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEE  466 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---------~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      +.|.+.....|+.+++-..++-....+++.+.         ...+...+....++.+  +|.+.+||+.|+.+++.++..
T Consensus       521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~  600 (1233)
T KOG1824|consen  521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIAN  600 (1233)
T ss_pred             hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            56667777899999999888888888877652         1223333444444444  688999999999999999999


Q ss_pred             hChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          467 FGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       467 ~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      +|.-.  .....+|.+.+-+.  +...|.+|++++..++..   +........++|.+...+.-.....|.+++.++..+
T Consensus       601 fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L  678 (1233)
T KOG1824|consen  601 FGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKL  678 (1233)
T ss_pred             HhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88421  22444555554443  567899999999998752   333445678899999888888889999999999999


Q ss_pred             hhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          542 IPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       542 ~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      ...++..   ...+.++.-+-.|.+++|-.|...|...|..+..
T Consensus       679 ~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  679 VKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             HHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            8877544   3334555666667889999998888888777653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=4.3e-19  Score=169.02  Aligned_cols=512  Identities=16%  Similarity=0.160  Sum_probs=363.1

Q ss_pred             cCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC--cHHHHHHHHHHhccccccCCCcc-hHhhhHHHHhhhh
Q 007842           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD--DDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLC   95 (587)
Q Consensus        19 ~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~   95 (587)
                      .+....+|-.-+.+...+-..-|.+ ....+.|...+.+..  ++.+|....-..|.++..+.+.+ -...++..+..-+
T Consensus        27 ~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~  105 (569)
T KOG1242|consen   27 EDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL  105 (569)
T ss_pred             CCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence            3445566666666555444444433 334778877764432  34455444433454444322222 2233444455555


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--HHHHHHHHHHHhcC
Q 007842           96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ  173 (587)
Q Consensus        96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~l~~  173 (587)
                      ..+.+.+|++...++..+........ ...+++.+.++.+.+....|..+...+..+......+  ....++..+....+
T Consensus       106 ~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~  184 (569)
T KOG1242|consen  106 DTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII  184 (569)
T ss_pred             CCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence            67889999999999998766554332 3456777777777666667777776666666655433  44567777777888


Q ss_pred             CCChHH-HHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc
Q 007842          174 DDMPMV-RRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS  250 (587)
Q Consensus       174 d~~~~v-r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  250 (587)
                      |..... |+.+..+.......+++  +.+.-.++|.+..-..|....||.++..+...+.+.++.......+.+.+..+.
T Consensus       185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~  264 (569)
T KOG1242|consen  185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL  264 (569)
T ss_pred             ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH
Confidence            875554 44677777778888774  233334445555555788899999999999999998887644444444444444


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc
Q 007842          251 QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  328 (587)
                      . ..|+-+.++++.+|.++...+..  .....++|.+.+.+.|..++||+++..++..++..+.+..+ ..++|.+...+
T Consensus       265 ~-~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l  342 (569)
T KOG1242|consen  265 E-AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL  342 (569)
T ss_pred             H-HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence            4 49999999999999888776543  23457999999999999999999999999999999887664 77889999999


Q ss_pred             cCCcHHHHHHHHHHHH-ccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc-hh---hHHhhHHHHHH
Q 007842          329 SDSSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID---LLSQSLLPAIV  403 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~~~~l~~l~  403 (587)
                      .|++-++..+.-.... .+...+.. ..+..++|++...+.+.+...+..++..+..++.... +.   .+.+.++|.+.
T Consensus       343 ~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk  421 (569)
T KOG1242|consen  343 ADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK  421 (569)
T ss_pred             cCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence            9998666655443322 23333322 4467899999999999999999999999999998773 22   45678888999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHhChHHHhhhhHHHHHh
Q 007842          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQVLE  482 (587)
Q Consensus       404 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  482 (587)
                      ..+.|..+.+|..+.++++.+.+..|...| +...|.+...+.+.... -|..++..++..+...+.+.+ ..++|.+..
T Consensus       422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a  499 (569)
T KOG1242|consen  422 ENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILA  499 (569)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHH
Confidence            989999999999999999999999998877 77888888888765554 478888899999888877643 445555544


Q ss_pred             hc--cCCchhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842          483 MI--NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       483 ~l--~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~  537 (587)
                      ..  ...++.+|...++.+.-+...++..  .+...+++.+.+.+.|.++.+|..+.++
T Consensus       500 ~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~  558 (569)
T KOG1242|consen  500 NASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA  558 (569)
T ss_pred             HHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence            32  3346678888887777766555543  3567889999999999999998887665

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.88  E-value=1.6e-18  Score=162.88  Aligned_cols=548  Identities=17%  Similarity=0.170  Sum_probs=377.0

Q ss_pred             hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCC--cchHhhhHHHHhh
Q 007842           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLET   93 (587)
Q Consensus        18 l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~   93 (587)
                      +.+.|+=+|.-..++.+..+.++|-+    +++||+....  ..+.+.|..-.++..+++.++|.  -.|...++..+.+
T Consensus       290 i~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~  365 (975)
T COG5181         290 ITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK  365 (975)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence            45778889999999999999998855    8899997743  23556665555555444444442  2356678888999


Q ss_pred             hhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHH
Q 007842           94 LCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (587)
Q Consensus        94 l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~  166 (587)
                      ++.|+...||--++.++..+++..+|-   ++...+.|+......+-. ..-.+.++..+.+.+..+|+    .-.+...
T Consensus       366 ~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~m~  444 (975)
T COG5181         366 LLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREHME  444 (975)
T ss_pred             HhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence            999999999999999999999987764   444456666554444321 11233445556667777776    3356778


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHH------hhhCCchhHHHHHHHHHHHHhhhcChhh
Q 007842          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFED------LTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (587)
Q Consensus       167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~------l~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                      ++....++++.+.++....... .+...+.   ..+.+.+.|.+.+      ...|...  .+....+-..+++..+   
T Consensus       445 iv~ref~spdeemkk~~l~v~~-~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~--~k~v~~ttvilAk~~g---  518 (975)
T COG5181         445 IVFREFKSPDEEMKKDLLVVER-ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRS--YKQVVLTTVILAKMGG---  518 (975)
T ss_pred             HHHHHhCCchhhcchhHHHHHH-HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccc--cceeehhHHHHHHHcC---
Confidence            8888888888777765544333 3333222   2233333333221      1111100  0011122223333333   


Q ss_pred             hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC------------------------------------------
Q 007842          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE------------------------------------------  275 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~------------------------------------------  275 (587)
                       .+.+..-+.....|+....|..++.+...+...+|..                                          
T Consensus       519 -~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r  597 (975)
T COG5181         519 -DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFR  597 (975)
T ss_pred             -ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhc
Confidence             2344455555566666666666666666555544321                                          


Q ss_pred             --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh---hCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842          276 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       276 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  350 (587)
                        .....++..+++.++++.+.||..++..++.++..   +|+.....++-..+.+.+....++|--..+.++..+....
T Consensus       598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~  677 (975)
T COG5181         598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH  677 (975)
T ss_pred             cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence              01123666677888999999999999988876654   4565555666667778888889999999888888877655


Q ss_pred             chh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh----chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842          351 GKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  423 (587)
Q Consensus       351 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~  423 (587)
                      +-.   .....++|.+...|++....|..+.+..++.++...    |...+. .+.-.+.+.+++-+..+|.++.+.++.
T Consensus       678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            422   235678888999999998999999998888887543    333332 223334556677888999999999999


Q ss_pred             HHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       424 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      +++.+|+.    .++..+++.|+-.+...|....-+++-..+..|+-    .++|.++.-...|+..++...++++..+.
T Consensus       757 Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         757 ISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             HHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence            99999974    46677888888888888888888888888887763    47888888888899999999999999999


Q ss_pred             cccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842          504 PVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       504 ~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      +..|...  +...+.|.+.+.+.|.++.-|..+...+.-+.-.....   ...-+++..|..=.-|+.|.|......+++
T Consensus       829 eyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e  908 (975)
T COG5181         829 EYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGME  908 (975)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHH
Confidence            9888643  56778999999999999999999999998887554332   222233444444346889999999999999


Q ss_pred             HHHHhhcc
Q 007842          579 SIDHVMMS  586 (587)
Q Consensus       579 ~l~~~~~~  586 (587)
                      .+.+.+|+
T Consensus       909 ~~~~~lg~  916 (975)
T COG5181         909 SFATVLGS  916 (975)
T ss_pred             HHHHHhcc
Confidence            99988875

>PRK09687 putative lyase; Provisional

Probab=99.87  E-value=4.3e-20  Score=168.50  Aligned_cols=255  Identities=20%  Similarity=0.176  Sum_probs=197.8

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhH
Q 007842          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  359 (587)
                      .-.+.+...+.|++..||..++.+|..+..        +.+++.+..++.|+++.+|..++.+|+++...-.   .....
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a   91 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNV   91 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHH
Confidence            345666777788888899998888877643        4456777778888889999999999888864211   12345


Q ss_pred             HHHHHHh-hcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842          360 LPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (587)
Q Consensus       360 ~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  438 (587)
                      +|.+..+ ++|+++.||..++.+|+.+.....  ......++.+...+.|++|+||..++.+++.+.        .+..+
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai  161 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAI  161 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHH
Confidence            6777665 788889999999999888753211  111345556667788999999999999886542        23467


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (587)
Q Consensus       439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~  518 (587)
                      +.+...+.|+++.||..|+.+|+.+.  .+    .+...+.|...+.|+++.+|..|+.+|+.+..        ...+|.
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~  227 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSV  227 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHH
Confidence            88889999999999999999999882  11    23567888888999999999999999999764        578899


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007842          519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS  579 (587)
Q Consensus       519 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~d~~Vr~~a~~al~~  579 (587)
                      +++.+++++  +|..++.+|+.+...        ..+|.|.+++. ++|..|+..|..++.+
T Consensus       228 Li~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        228 LIKELKKGT--VGDLIIEAAGELGDK--------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            999999866  788999999998763        68999999875 8899999999999875

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.86  E-value=9.9e-20  Score=194.87  Aligned_cols=275  Identities=22%  Similarity=0.255  Sum_probs=221.4

Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh
Q 007842          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  321 (587)
                      .++.+...++|+++.||..|++.|+.+.        ....++.+...++|+++.||..|+.+|..+.+....       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            4566778889999999999999999865        245788999999999999999999999888654332       2


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      +.+...++++++.||.+++.+|+.+...  .       .+.+...+.|.++.||..++.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            4566777889999999999999887521  1       1346678999999999999999998632           123


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  481 (587)
                      +...+.|+++.+|..++..|+.+...-      ....+.+..+++|+++.||.+|+.+|+.+...       ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            456789999999999999998875421      11256778889999999999999999887421       23345677


Q ss_pred             hhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842          482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  561 (587)
Q Consensus       482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                      ..+.|++|.+|..|+.+|+.+..        +..++.+..+++|+++.||..++.+|+.+..       .+...+.|...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-------~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-------DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-------CHHHHHHHHHH
Confidence            88999999999999999998753        4567899999999999999999999999721       13567888888


Q ss_pred             cCCCCccHHHHHHHHHHH
Q 007842          562 TEDPDVDVRFFATQAIQS  579 (587)
Q Consensus       562 ~~d~d~~Vr~~a~~al~~  579 (587)
                      ++|.|++||..|.+||..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999863

>PTZ00429 beta-adaptin; Provisional

Probab=99.86  E-value=1.5e-16  Score=162.31  Aligned_cols=499  Identities=14%  Similarity=0.103  Sum_probs=325.5

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhhH
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~   88 (587)
                      ++.+|.+.|++.+...|..+++.+-.. ..+|.+.  ..+.|-+.... .++-++++.+.-.+.++++  ..++..-..+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--~~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRDV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--LQPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCCc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cChHHHHHHH
Confidence            467777888888877777777766543 3455332  23444443332 3445666666555555543  1233333445


Q ss_pred             HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHH
Q 007842           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  168 (587)
                      +.|.+-+.|+||.+|-.|++.++.+..                                          ++....+.+.+
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~------------------------------------------~~i~e~l~~~l  145 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRV------------------------------------------SSVLEYTLEPL  145 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCc------------------------------------------HHHHHHHHHHH
Confidence            666666667777777777776665421                                          22344566677


Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-hhhchHHHHH
Q 007842          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV  247 (587)
Q Consensus       169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~  247 (587)
                      ..++.|.+|.||+.|+-++.++....++-.....+.+.+..++.|.++.|...|+.++..+.+..+... .....+..+.
T Consensus       146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll  225 (746)
T PTZ00429        146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLV  225 (746)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence            778889999999999999999877653222234567777788899999999999998888876544210 1111222233


Q ss_pred             HhccCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HHHhHhHH
Q 007842          248 NFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPC  323 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~  323 (587)
                      ..+.+-++..+...++.+..   ..+. +.....++..+...++..++.|..+|++++..+....+++.   ....+.+.
T Consensus       226 ~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~p  302 (746)
T PTZ00429        226 YHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTA  302 (746)
T ss_pred             HHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHH
Confidence            33344444555555555533   2221 11223577778888888999999999999888876544332   12234455


Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHH
Q 007842          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~  403 (587)
                      +..+ ..+++.+|..++..+..+....+ ..+... +..+.-..+|. ..||...++.|..++..-.    ...++..+.
T Consensus       303 Lv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~N----v~~IL~EL~  374 (746)
T PTZ00429        303 LLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDP-PFVKLEKLRLLLKLVTPSV----APEILKELA  374 (746)
T ss_pred             HHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCc-HHHHHHHHHHHHHHcCccc----HHHHHHHHH
Confidence            5555 45678899999998877765442 223222 34444455665 4589999998888765322    245677788


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh
Q 007842          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  483 (587)
Q Consensus       404 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  483 (587)
                      ++..+.+..++..++.+++.++..+..  ..+.++..+..++.+... +...++.++..+.+.+....    +++.+...
T Consensus       375 eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~----il~~L~~~  447 (746)
T PTZ00429        375 EYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL----MLDTLVTD  447 (746)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH----HHHHHHHh
Confidence            888899999999999999999976543  456788888888876554 44467888999988776542    34444432


Q ss_pred             c---cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH
Q 007842          484 I---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE  560 (587)
Q Consensus       484 l---~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~  560 (587)
                      +   .-.++..|.+.++.+|..+..+..   ...++..+++.+.+.++.||...+.+..++....+++ ....+...+..
T Consensus       448 ~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~  523 (746)
T PTZ00429        448 YGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLET  523 (746)
T ss_pred             hcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHH
Confidence            2   123677899999999999876543   2456655666667788999999999999998776543 23455666655


Q ss_pred             hcC-CCCccHHHHHHHHH
Q 007842          561 LTE-DPDVDVRFFATQAI  577 (587)
Q Consensus       561 l~~-d~d~~Vr~~a~~al  577 (587)
                      +.+ |.++|||.+|.-=.
T Consensus       524 ~t~~~~d~DVRDRA~~Y~  541 (746)
T PTZ00429        524 VTTHSDDPDVRDRAFAYW  541 (746)
T ss_pred             HHhcCCChhHHHHHHHHH
Confidence            544 67789999998543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.85  E-value=8.3e-16  Score=143.79  Aligned_cols=508  Identities=12%  Similarity=0.093  Sum_probs=342.0

Q ss_pred             HHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcH-HHHHHHHHHhccccccCCCcchH----hhh
Q 007842           14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGVEHA----HVL   87 (587)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~l~~~~~~~~~~----~~l   87 (587)
                      .+..|+|..+.-..+|...++.|+..--|...|++++..+..-. +..+ ...+.....+|.......-+...    ..+
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il  178 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVIL  178 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHH
Confidence            45668999999999999999999988888888888888777633 3333 34455555666665432211111    122


Q ss_pred             HHHHhhh-hcchhhHHHHHHHHHHHHHHh----hcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhh----cCCCCh
Q 007842           88 LPPLETL-CTVEETCVRDKAVESLCRIGS----QMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSAPD  158 (587)
Q Consensus        88 ~~~l~~l-~~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~  158 (587)
                      +.+..-. -..++..||.+|+.+|..-+.    .+..+.-.+.+++.+.+..+.++.....++.+.+.++    ++..++
T Consensus       179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~  258 (858)
T COG5215         179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS  258 (858)
T ss_pred             HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222 235677899999999887322    2333444567777777777777777776666655543    334444


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--------c-----------hhhhHHHHHHHHhhh-------
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------A-----------HLKTDIMSIFEDLTQ-------  212 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--------~-----------~~~~~l~~~l~~l~~-------  212 (587)
                      ...+.+..+....+.+++.+|...+.+....++..--+        +           .....++|-+.+++.       
T Consensus       259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~  338 (858)
T COG5215         259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY  338 (858)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            45566777777889999999999988888776654211        0           012335666655542       


Q ss_pred             CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhc
Q 007842          213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLL  289 (587)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l  289 (587)
                      +++|++-.+|..+|.-++...++. ....++.++.+-+..++|.-|..++.++|.+...-...   ...++.+|.+....
T Consensus       339 ~DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m  417 (858)
T COG5215         339 GDDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM  417 (858)
T ss_pred             ccccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence            345678888888888888877765 34448888899999999999999999999987632211   12346788888888


Q ss_pred             CCChHHHHHHHHHhHHHHHhhhCH----H-----------------------------------------------HHHH
Q 007842          290 RDNEAEVRIAAAGKVTKFCRILNP----E-----------------------------------------------LAIQ  318 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~----~-----------------------------------------------~~~~  318 (587)
                      .|+.-.|+..++.+++.++.++..    .                                               .+..
T Consensus       418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~  497 (858)
T COG5215         418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL  497 (858)
T ss_pred             ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence            888888888888889888875421    0                                               0111


Q ss_pred             hHhHHHHHh--ccCCcHHHHHHHHHHHHccccccchhH------HHHhHHHHHHH-------hhc--CC--ChHHHHHHH
Q 007842          319 HILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLS-------LLK--DE--FPDVRLNII  379 (587)
Q Consensus       319 ~i~~~l~~~--~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~-------~l~--d~--~~~vr~~a~  379 (587)
                      .++..+.+.  ..+.+...|.++.++|+.+....+...      +...+...+..       .+.  |.  ..++....+
T Consensus       498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~  577 (858)
T COG5215         498 AILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYI  577 (858)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            222222221  125566789999999998877664321      11112111111       111  11  256777778


Q ss_pred             Hhhhhhhhhhch--hhHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHHhcCCCchHHHH
Q 007842          380 SKLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRD  454 (587)
Q Consensus       380 ~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~  454 (587)
                      ..|..++...+.  +...+.++..+..+++..+ ..+-..+.-+++.++..++.  +.+.+.++|.+...++..+..|-.
T Consensus       578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~  657 (858)
T COG5215         578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN  657 (858)
T ss_pred             HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence            888888877765  3444667788888777664 34445577778888887754  456788999999999999999999


Q ss_pred             HHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhh
Q 007842          455 AAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINA  522 (587)
Q Consensus       455 ~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~  522 (587)
                      .|+..++.+.+.+|.++  +.+.++..+.+.+.+++  ..++-+.+.++|.++..+|..+  +.+.++-.+...
T Consensus       658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa  731 (858)
T COG5215         658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA  731 (858)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999886  45778888888888774  5688899999999999888765  455555555443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.84  E-value=5.2e-18  Score=174.70  Aligned_cols=470  Identities=18%  Similarity=0.141  Sum_probs=336.5

Q ss_pred             ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (587)
Q Consensus         9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l   87 (587)
                      .-+...++.+.|.|...|.-+--.+..+.. ..++ ...-.+..+.. ..++++.+|..+.++++++.    .++..+.+
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l  115 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLH-EDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL  115 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTT-TSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-cchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence            446777888889998888877666655432 2222 12234444444 45667778877788888874    46888899


Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---HHHHHH
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL  164 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l  164 (587)
                      .+.+.+++.|+++.||+.|+.++.++.+.. ++.+...+.|.+..+..|.+..++..|+.++..+ ...++   .....+
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~  193 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL  193 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence            999999999999999999999999998874 3333333788888888888888898899888777 22222   234566


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhh--hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (587)
                      ...+...+.+++|+.+..+++.+..++..-  +...  ..+++.+..++++.++.|+..++..+..+...   ......+
T Consensus       194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~  268 (526)
T PF01602_consen  194 IRILCQLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKA  268 (526)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHH
T ss_pred             HHHhhhcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhh
Confidence            666667779999999999999888776542  2222  46788888888888889988888887765442   2246678


Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhH
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  322 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~  322 (587)
                      .+.+..++.++++.+|..+++.+..++...++...  .....+..+..|++..+|..++..+..++..   + -...+++
T Consensus       269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~-n~~~Il~  342 (526)
T PF01602_consen  269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE---S-NVKEILD  342 (526)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---H-HHHHHHH
T ss_pred             HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc---c-chhhHHH
Confidence            88899999999999999999999988765311111  2222223334478899999999988888753   2 2255677


Q ss_pred             HHHHhccCC-cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          323 CVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       323 ~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      .+.+.+.+. +..+|..++..++.++..++..  .+..++.+.+++......+...++..+..+.......  ....+..
T Consensus       343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~  418 (526)
T PF01602_consen  343 ELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKK  418 (526)
T ss_dssp             HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHH
T ss_pred             HHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHH
Confidence            777777444 7789999999999998776432  3456788888888877788888888888877553322  2445666


Q ss_pred             HHHHhcC-CChHHHHHHHHHHHHHHHhhCh-hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842          402 IVELAED-RHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (587)
Q Consensus       402 l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  479 (587)
                      +.+.+.+ .++.++..++..+|..+..... . ....++..+...+.+.+..||..++.++.++....+.....+.+.+.
T Consensus       419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~  497 (526)
T PF01602_consen  419 LIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQF  497 (526)
T ss_dssp             HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence            6666655 6678888899999988877654 3 45567777777778888889999999999988877654344567777


Q ss_pred             HHhhcc--CCchhHHHHHHHHHHHh
Q 007842          480 VLEMIN--NPHYLYRMTILRAISLL  502 (587)
Q Consensus       480 l~~~l~--d~~~~~R~~a~~~l~~l  502 (587)
                      +..+.+  +.+..+|..|.+.+.-+
T Consensus       498 ~~~~~~~~s~~~evr~Ra~~y~~ll  522 (526)
T PF01602_consen  498 LLSLATEDSSDPEVRDRAREYLRLL  522 (526)
T ss_dssp             HHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHH
Confidence            777776  77888888888776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=99.84  E-value=8.1e-19  Score=160.15  Aligned_cols=255  Identities=15%  Similarity=0.080  Sum_probs=202.2

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  320 (587)
                      .-.+.+...+.|++..||..++..|+.+.        ....++.+..+++|+++.+|..++.+|+.+...-..   ....
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a   91 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV   91 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence            34555667778999999999999998764        256788888889999999999999999998642111   2356


Q ss_pred             hHHHHHh-ccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842          321 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       321 ~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  399 (587)
                      ++.+..+ .+|+++.||..++.+|+.++..-.  .....+++.+...+.|.++.||..++.+|+.+..        +..+
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai  161 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI  161 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence            7777766 789999999999999999863221  1123456667778889999999999999987653        4568


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (587)
Q Consensus       400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  479 (587)
                      +.+..+++|++|.+|..++..++.+..  +    .+...+.+...+.|+++.||..|+.+|+.+..        ...+|.
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~  227 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSV  227 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHH
Confidence            888899999999999999999988721  1    23467788889999999999999999988532        357888


Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC-CCChhHHHHHHHHHHH
Q 007842          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS  540 (587)
Q Consensus       480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~  540 (587)
                      +.+.+++++  +|..++.++|.+..        +..+|.+.++++ +++..||..+.++|.+
T Consensus       228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            989888876  67789999999876        578899999986 8899999999888764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.84  E-value=1.1e-15  Score=142.87  Aligned_cols=567  Identities=13%  Similarity=0.057  Sum_probs=371.7

Q ss_pred             HHHHH-hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccC--CcHHHHHHHHHHhcc-cccc----------
Q 007842           13 VLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND--DDDEVLLAMAEELGV-FIPY----------   77 (587)
Q Consensus        13 ~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~--~~~~v~~~~~~~l~~-l~~~----------   77 (587)
                      -|.+. +=|+|+..|+.|-..|.+++...     ....+-.+.+ ..|  +.++.|..++-.|.+ +...          
T Consensus         8 ~l~~n~vLspD~n~rl~aE~ql~~l~~~d-----F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q   82 (858)
T COG5215           8 CLGKNHVLSPDPNARLRAEAQLLELQSGD-----FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQ   82 (858)
T ss_pred             HHHhcccCCCCCCccccHHHHHHHhcccc-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence            34444 45788889999988887764321     1233334444 223  344666666555533 2110          


Q ss_pred             --CC-CcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHH-HhcCCCCcchhhHHhhhHhhc
Q 007842           78 --VG-GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR-LAAGEWFTARVSACGLFHIAY  153 (587)
Q Consensus        78 --~~-~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~~~~~~~r~~a~~~l~~~~  153 (587)
                        +| ..+...++-......+.+++|..-..|...++.++..--|...+..+...+.. .+.......+..++.+++..+
T Consensus        83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence              00 01122344444455667889999999999999998865555556655555544 444446677888999999998


Q ss_pred             CCCChH-----HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHh----hccchhhhHHHHHHHHhhhCCchhHHHHHH
Q 007842          154 PSAPDI-----LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAAT----VEPAHLKTDIMSIFEDLTQDDQDSVRLLAV  223 (587)
Q Consensus       154 ~~~~~~-----~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~  223 (587)
                      ....|+     +..-++.+.. .+-+.++..||-+++.+|..-+..    +..+.-.++++.......+.++.++..++.
T Consensus       163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf  242 (858)
T COG5215         163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF  242 (858)
T ss_pred             hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence            888775     2223334333 234556788999998888773332    223556677888877778888889999988


Q ss_pred             HHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH----------hCCCc---------cccch
Q 007842          224 EGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA----------VGPEP---------TRMDL  281 (587)
Q Consensus       224 ~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~----------~~~~~---------~~~~l  281 (587)
                      .++..+.....+   .-..+-+..+..+.+.+++.+|...+++....++..          +++..         ...++
T Consensus       243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv  322 (858)
T COG5215         243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV  322 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH
Confidence            888877643222   112233455566778899999999999999888863          11100         02358


Q ss_pred             HHHHHHhcC-------CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh-
Q 007842          282 VPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-  353 (587)
Q Consensus       282 ~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-  353 (587)
                      +|.+++++.       +++|++..+|..+|.-++...|+... ..++.++.+-+..++|.-|.+++.+++.+....... 
T Consensus       323 lP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~  401 (858)
T COG5215         323 LPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC  401 (858)
T ss_pred             HHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence            888888873       35699999999999999998887654 558899999999999999999999999887654332 


Q ss_pred             --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842          354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~  427 (587)
                        .+.++.+|.+...+.|..--|+..++++++.+...+...    ............-+.| ++++-..+...+..++.+
T Consensus       402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDH  480 (858)
T ss_pred             HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHh
Confidence              246778899999999999999999999999998765422    1111111111111222 222222222222233322


Q ss_pred             hCh------h---hhHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHhChHH------HhhhhHHHH-------Hhh
Q 007842          428 LGV------G---FFDDKLGALCMQW--LQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQV-------LEM  483 (587)
Q Consensus       428 ~~~------~---~~~~~l~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l-------~~~  483 (587)
                      +.+      .   .|...++..++..  +.+++.+.|.++..+|+.++.......      +.+.+...+       .+.
T Consensus       481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~  560 (858)
T COG5215         481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI  560 (858)
T ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            211      1   1333444444433  257888899999999999986443321      111111111       111


Q ss_pred             c--cCC--chhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCC-ChhHHHHHHHHHHHhhhhhchH--HHHhhH
Q 007842          484 I--NNP--HYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS--MVEKTI  554 (587)
Q Consensus       484 l--~d~--~~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~i  554 (587)
                      +  .|.  -..+..+.+..+..+....++  +...+.++..+++.+... ...+-.-+..+++.+...+++.  .+.+.+
T Consensus       561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f  640 (858)
T COG5215         561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF  640 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1  111  245667778888888877776  456677999999988776 4556677788888888877664  678899


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          555 RPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .|.+.+-++..|.-|-..|..-++.++..+|.
T Consensus       641 iPyl~~aln~~d~~v~~~avglvgdlantl~~  672 (858)
T COG5215         641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGT  672 (858)
T ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence            99999988999999999999999999988764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.83  E-value=2.5e-18  Score=184.18  Aligned_cols=274  Identities=20%  Similarity=0.187  Sum_probs=218.4

Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchH
Q 007842          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (587)
Q Consensus       203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~  282 (587)
                      -++.+...+.|+++.||..|+..|+.+..        +..++.|...++|+++.||..++.+|+.+....+       -.
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PA  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------ch
Confidence            34566677889999999999999987642        4467888888999999999999999998865322       23


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  362 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  362 (587)
                      +.+...++++++.||..++.+|+.+..  +.       ...+...+.|+++.||..++.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            566777889999999999999988642  11       1345668899999999999999988642           134


Q ss_pred             HHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHH
Q 007842          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  442 (587)
                      +..++.|++++||..++.+|+.+...-      ...++.+..+++|+++.+|..++..|+.+..   +    +...+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~----~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC---P----PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---c----chhHHHHH
Confidence            567899999999999999999876531      2236778888999999999999999987632   1    12335577


Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhh
Q 007842          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA  522 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~  522 (587)
                      ..+.|++|.||.+|+.+|+.+..        +..++.+..+++|+++.||..++.+|+.+.   +.    +...+.+.+.
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHH
Confidence            88899999999999999987642        345688889999999999999999999972   11    4567888899


Q ss_pred             cCCCChhHHHHHHHHHH
Q 007842          523 SKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       523 l~d~~~~vR~~~~~~l~  539 (587)
                      ++|+++.||..+.++|.
T Consensus       879 l~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        879 LTDSDADVRAYARRALA  895 (897)
T ss_pred             HhCCCHHHHHHHHHHHh
Confidence            99999999999999986

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.8e-16  Score=148.01  Aligned_cols=379  Identities=16%  Similarity=0.194  Sum_probs=294.1

Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh----hCCchhHHHHHHHHHHHHhhhcChh--hhhhc
Q 007842          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----QDDQDSVRLLAVEGCAALGKLLEPQ--DCVAH  241 (587)
Q Consensus       168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~  241 (587)
                      +...+.|...+-|++++.-+.++.+.+-.....+.+-..+..++    .......|++++-++...+-.++.+  .+...
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            44567788889999999999999888766554455555555444    4455567888888887776666653  36777


Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HH
Q 007842          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----EL  315 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~  315 (587)
                      ++|-+..+++|++.+||..|++.+-++++....+.  ..+.+...+.++..|.+..||.+ ++.+..+.+.+-.    ..
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF  163 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF  163 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence            88889999999999999999999999999876543  34567888888999999999876 4556665554322    23


Q ss_pred             HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh
Q 007842          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (587)
Q Consensus       316 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (587)
                      ..+.++|.+...+.+.++..|....+++..+-..-+-+.  +.+.+++.+.+++.|++++||..+-.+++.+...+..+.
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            357889999999999999999999999988766655443  467889999999999999999999999998887765431


Q ss_pred             ---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHh
Q 007842          394 ---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF  467 (587)
Q Consensus       394 ---~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~  467 (587)
                         -.+.+++.+..-+.++++.++..++..+..+.+..|++..  .+.++..++.++.|+.. .++..+...-+.+.+.+
T Consensus       244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence               1256677777778889999999999999999988776543  34556666777777776 58877777666666555


Q ss_pred             ChHHH-----hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842          468 GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       468 ~~~~~-----~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  540 (587)
                      +.+..     ...++..+...+.+.....|.+++.++..+....+.+.  +...+.+.+++.+.|++..|-..++..+..
T Consensus       324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            44322     24678888889999999999999999999988777654  367899999999999999999999999999


Q ss_pred             hhhhhch
Q 007842          541 LIPIVDQ  547 (587)
Q Consensus       541 l~~~~~~  547 (587)
                      ++..-..
T Consensus       404 i~~s~~~  410 (675)
T KOG0212|consen  404 ICSSSNS  410 (675)
T ss_pred             HhcCccc
Confidence            9876433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=5e-17  Score=164.19  Aligned_cols=309  Identities=18%  Similarity=0.207  Sum_probs=225.4

Q ss_pred             HHHHHHHHhcC-CCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc------c
Q 007842          126 YIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------A  197 (587)
Q Consensus       126 l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~------~  197 (587)
                      +++++.+.... .....|..|+.++..+....+.+ ..+.++|++..+..|+.+.||..|+.++..+...+.+      .
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            45555444433 24567788888888888888766 6688999999999999999999999999888877654      2


Q ss_pred             hhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH--hccCCcHHH--HHHHHHHHHHHHHHh
Q 007842          198 HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN--FSQDKSWRV--RYMVANQLYELCEAV  272 (587)
Q Consensus       198 ~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--~~~d~~~~v--R~~a~~~l~~~~~~~  272 (587)
                      .+.++++|.+..+..| ....||.+.+..|+.++.....-  . .....+.+  ..+|++.+.  ...--..++.+    
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF--l-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L----  575 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF--L-ELTQELRQAGMLNDPNSETAPEQNYNTELQAL----  575 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH--H-HHHHHHHhcccccCcccccccccccchHHHHH----
Confidence            4778899999999988 56788988888888888754320  1 01111111  123333320  00000001111    


Q ss_pred             CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch
Q 007842          273 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK  352 (587)
Q Consensus       273 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                           ...+-.....++.|+++.||++-++.+..++..+|.+.-.+.+++.+...++|++|..|.+..+.+..++-.+|.
T Consensus       576 -----~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~  650 (1431)
T KOG1240|consen  576 -----HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW  650 (1431)
T ss_pred             -----HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence                 112445567788999999999999999999999998876678999999999999999999999999999999998


Q ss_pred             hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch-hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh
Q 007842          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  431 (587)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~  431 (587)
                      ....+.++|.+.+.+.|.++.|-..|+.++..+++.--. +.....++.....++-++|-.+|.+++..|..+++.++..
T Consensus       651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a  730 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA  730 (1431)
T ss_pred             eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence            877889999999999999999999999999998864221 1112334445555778999999999999999999888755


Q ss_pred             hhHHHHHHHHHHhcC
Q 007842          432 FFDDKLGALCMQWLQ  446 (587)
Q Consensus       432 ~~~~~l~~~l~~~l~  446 (587)
                      ...-.+.|++-.++.
T Consensus       731 dvyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  731 DVYCKLMPLIRPFLE  745 (1431)
T ss_pred             hheEEeehhhHHhhh
Confidence            444445555544444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=1.6e-14  Score=149.72  Aligned_cols=499  Identities=19%  Similarity=0.208  Sum_probs=291.7

Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh----HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                      ...+...|..++.+++|+.|+++...|-.+.++++...    -.+++..-+.++..|+++-.+-.|..-++..|+-.+..
T Consensus       816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence            34567778889999999999999999999988887311    12223333344444443333333333344433333222


Q ss_pred             HHHHHHHH---------------------------------------------------------HHHhcCC-CChHHHH
Q 007842          160 LKTELRSI---------------------------------------------------------YTQLCQD-DMPMVRR  181 (587)
Q Consensus       160 ~~~~l~~~---------------------------------------------------------l~~l~~d-~~~~vr~  181 (587)
                      .++.++.-                                                         +.++.++ ..+.-|+
T Consensus       896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~  975 (1702)
T KOG0915|consen  896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK  975 (1702)
T ss_pred             hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence            22222222                                                         2222222 2344566


Q ss_pred             HHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHH
Q 007842          182 SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRV  257 (587)
Q Consensus       182 ~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v  257 (587)
                      +++-.++.++...+.  +.+...++|-+-+.--|++..|+.+-..++..+...-..  +.+.++|+.-+...+.+..|+|
T Consensus       976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen  976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred             chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            677777777766644  345666777777777788888887777777766543222  3355566666666677788888


Q ss_pred             HHHHHHHHHHHHHHhCCCccccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHhhh---C-------HHHHHHhHhHHH
Q 007842          258 RYMVANQLYELCEAVGPEPTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---N-------PELAIQHILPCV  324 (587)
Q Consensus       258 R~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~i~~~l  324 (587)
                      |.+++-++..+...-+.+...+.   +...+.+.++|-...||.++-++...+++.+   .       ...+...++|++
T Consensus      1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence            88888888888775443333333   3333444456666778887766655554432   1       124456677777


Q ss_pred             H-HhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChHH-------------------HHHH----
Q 007842          325 K-ELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDV-------------------RLNI----  378 (587)
Q Consensus       325 ~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a----  378 (587)
                      . +...+.-..||+.++..+..++...|..  .+...++|.+......-++.|                   |..+    
T Consensus      1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred             hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence            5 2333556788888888888887777653  245667777766655444333                   2222    


Q ss_pred             --HHhhhhhhhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHH
Q 007842          379 --ISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIR  453 (587)
Q Consensus       379 --~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr  453 (587)
                        .+++.....+++... .+.++|.+.+++.. -.-..|.+++..+..++..+|.+.  +..+++..++..++|.+..+|
T Consensus      1216 pmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred             cHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence              122333333333333 35677777776654 356677788888888888777553  556788888888899999999


Q ss_pred             HHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCC---Ch
Q 007842          454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR---VP  528 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~---~~  528 (587)
                      .+-..+.+.+++.-.++.+.+-+-..+..++.+.+. .+..++..+.+++.+...  +.+...++|.+.-...+.   +.
T Consensus      1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q 1373 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQ 1373 (1702)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHH
Confidence            999999999988766654433332333333333222 224444444444432221  114566777665544433   11


Q ss_pred             hHHHHHHHHHHHhhhhhch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          529 NIKFNVAKVLQSLIPIVDQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~~~-~-~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +.+......+.-.  ..+. . ...+.+.+.+.+..++..+.+|..+++++..++.-+.+
T Consensus      1374 ~Lw~dvW~e~vsg--gagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1374 ELWNDVWAELVSG--GAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred             HHHHHHHHHhCCC--CcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence            1111111111100  0011 1 22345667777788888899999999999888765443

>PTZ00429 beta-adaptin; Provisional

Probab=99.76  E-value=1.3e-13  Score=141.09  Aligned_cols=476  Identities=11%  Similarity=0.048  Sum_probs=319.0

Q ss_pred             CCCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCC
Q 007842            1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG   79 (587)
Q Consensus         1 ~~~~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~   79 (587)
                      |.+|.+-..=+...++.+.++|...|.-+.-++..++.. .|+.. --.+..+.. +.+.++.+|..+.+.++.+    .
T Consensus        60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~pela-lLaINtl~KDl~d~Np~IRaLALRtLs~I----r  133 (746)
T PTZ00429         60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QPEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCI----R  133 (746)
T ss_pred             HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-ChHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C
Confidence            445544444467778899999999999888777766542 22322 134565554 6667788888888888776    3


Q ss_pred             CcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842           80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        80 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                      .++....+.+.+.+.+.|+++.||+.|+.++.++....+.-.....+.+.+.++..|.+..+...|+..+..+....+..
T Consensus       134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence            35777888888999999999999999999999997754432223457788888888889999988988887776554321


Q ss_pred             --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh
Q 007842          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (587)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                        .....+.-+...+.+-+++-+..+++.+......  .+.....++..+...++..++.|...|++++-.+.....++.
T Consensus       214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~  291 (746)
T PTZ00429        214 IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL  291 (746)
T ss_pred             hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence              1223333344555666788888877777542111  122234566666666778889999999999888876554321


Q ss_pred             ---hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 007842          238 ---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (587)
Q Consensus       238 ---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                         ....+.+.+..+ ...++.+|..+++.+..+....+ ..... -+..|.-..+|+. .||...++.|..++..-.- 
T Consensus       292 ~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv-  366 (746)
T PTZ00429        292 IERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA-  366 (746)
T ss_pred             HHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcccH-
Confidence               122233444455 34668899999999988877532 11111 1333444456665 5899999988888753222 


Q ss_pred             HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842          315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  394 (587)
                         ..++.-+.....+.+..++..++.+++.++..++.  ..+..+..+..++.+... +...++..+..+.+.+.... 
T Consensus       367 ---~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~-  439 (746)
T PTZ00429        367 ---PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL-  439 (746)
T ss_pred             ---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH-
Confidence               55667777777888999999999999999876543  356777888888876544 44456777777776654332 


Q ss_pred             HhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842          395 SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (587)
Q Consensus       395 ~~~~l~~l~~~~---~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                         +++.+...+   .-.++..|.+++..+|..+..+..   .+.++..+..-+.++...||.+.+.+..++.-....+.
T Consensus       440 ---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~  513 (746)
T PTZ00429        440 ---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM  513 (746)
T ss_pred             ---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH
Confidence               334444322   124678899999999998876543   23455445566677889999999999888887655432


Q ss_pred             HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhc
Q 007842          472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAP  504 (587)
Q Consensus       472 ~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~  504 (587)
                        ...+..+++..  .+.|+.+|-.|.....-+..
T Consensus       514 --~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~  546 (746)
T PTZ00429        514 --EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK  546 (746)
T ss_pred             --HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence              23444555432  35678999999876665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-16  Score=161.56  Aligned_cols=300  Identities=20%  Similarity=0.219  Sum_probs=230.7

Q ss_pred             chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC------CccccchHHHHHHh
Q 007842          215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRL  288 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~  288 (587)
                      ....|..|++.+..++....++...+.++|++..+..|+...||..|+.++..+...+.+      ..+++.++|.+..+
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            445688899999999999998888999999999999999999999999999988776543      34567899999999


Q ss_pred             cCC-ChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHH--HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHH
Q 007842          289 LRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS  365 (587)
Q Consensus       289 l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  365 (587)
                      +.| ....||.+-+.+|+.++.....  |... ...+.  .+.++++.+       ....-...-+.......+-..+..
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~r--Fle~-~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v~s  585 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAYR--FLEL-TQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMVSS  585 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHHH--HHHH-HHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHHHH
Confidence            998 6688999999999998874221  1111 11111  123444433       000000000112234455566788


Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      ++.|+.+.||.+.++.|..++..+|.+..-+.+++.+..+++|++|+.|.+.++.|..++-.+|.....++++|++.+.+
T Consensus       586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~l  665 (1431)
T KOG1240|consen  586 LLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGL  665 (1431)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhc
Confidence            99999999999999999999999998877788999999999999999999999999988888898878899999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhC-hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC
Q 007842          446 QDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  524 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~  524 (587)
                      .|..+.|-..|+.++..+++.-- .+....+++.....++-.||..+|.+++..|..+...++.....-.++|.+-..+.
T Consensus       666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  666 TDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             cCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            99999999999999999987321 11223456666677788999999999999999999988876655556665555444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=3.8e-14  Score=132.78  Aligned_cols=443  Identities=14%  Similarity=0.102  Sum_probs=308.3

Q ss_pred             hhcchhhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc---CCCChHHHHHHHH
Q 007842           94 LCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY---PSAPDILKTELRS  166 (587)
Q Consensus        94 l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~---~~~~~~~~~~l~~  166 (587)
                      .++|.--+-|++|+--+.++.+.+-.    +++.+.+-.+...++.+.....|..+.-.+....   ..-+..+...+++
T Consensus         8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~   87 (675)
T KOG0212|consen    8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVP   87 (675)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhH
Confidence            34566667788888888888776533    3444444445556666555444443332221111   1111238889999


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhh
Q 007842          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVA  240 (587)
Q Consensus       167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~  240 (587)
                      .+..+++|.+..||..+|+++.++++....+  .+.+.+...+.++..|.+.+||.+ ++.+..+.+.+..    ....+
T Consensus        88 Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~  166 (675)
T KOG0212|consen   88 PVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLP  166 (675)
T ss_pred             HHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHH
Confidence            9999999999999999999999999998765  366788888889999999998864 5666666554432    33467


Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---
Q 007842          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---  315 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  315 (587)
                      .++|++..-+.+.++..|...+..+..+-..-+-+  ...+.+++.+.++++|+.++||..+-.+++.+...+..++   
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~  246 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM  246 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            79999999999999999999999887654321111  1234689999999999999999999999988877664331   


Q ss_pred             HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchh
Q 007842          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       316 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~  392 (587)
                      -.+..++.+...+..+++.++..|...+..+....|++.  +...++..++.++.+.++ .++..+...-+.+....+.+
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~  326 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE  326 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence            125677888888899999999999999999998888764  344555666667777655 46655554433333333322


Q ss_pred             h-----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842          393 L-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (587)
Q Consensus       393 ~-----~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      .     -...++..+...+.+.....|.++++.+..+-...+.+.+  .+.+.+.++.-+.|++..|-..++..++.+++
T Consensus       327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS  406 (675)
T ss_pred             hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence            1     1246788888889999999999999999998887765543  46688889999999999999999999999987


Q ss_pred             HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          466 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       466 ~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      .-..... -.++..+.+++.....-.+..+...+..++..+.++.+...+-..+..   .++-..-..-+++|-.+
T Consensus       407 s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~---e~nl~FAstMV~~Ln~i  478 (675)
T KOG0212|consen  407 SSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER---EENLKFASTMVQALNTI  478 (675)
T ss_pred             CcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc---cccchHHHHHHHHHHhh
Confidence            4332111 234555666666666666777777888888777776554444333333   23334444444444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.8e-13  Score=130.32  Aligned_cols=343  Identities=14%  Similarity=0.133  Sum_probs=248.2

Q ss_pred             hhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-
Q 007842          239 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-  313 (587)
Q Consensus       239 ~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  313 (587)
                      ..-++|.+.+++. +.++.++..|+.+|.+++.....   -......+|.|+.++.+++..|+..|+.+|+.++..-.. 
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            4456777777764 77799999999999999874332   223456899999999999999999999999998864322 


Q ss_pred             --HHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842          314 --ELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       314 --~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  387 (587)
                        -.....+++.+..++..++. ...+.+.+++.+++..-.+   -.....++|.+..++.+.+++|...|+++++.+..
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence              12234466667777665554 7788889999999876521   13466789999999999999999999999998875


Q ss_pred             hhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcC-CCchHHHHHHHH
Q 007842          388 VIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQ-DKVYSIRDAAAN  458 (587)
Q Consensus       388 ~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~-d~~~~vr~~a~~  458 (587)
                      .-...   .+...++|.+..++.+.+..++..++.+++.++.  |.+..     ....+|.+..++. .+...+|..|+-
T Consensus       267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW  344 (514)
T KOG0166|consen  267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW  344 (514)
T ss_pred             CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence            43221   1234678999999999999999999999988764  33332     2345788888887 667779999999


Q ss_pred             HHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHH
Q 007842          459 NLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIK  531 (587)
Q Consensus       459 ~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR  531 (587)
                      +++++......   ..+...++|.+...+...++.+|..|+++++++.....++.    +...+++.+.+++.-++..+-
T Consensus       345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            99999862211   12346799999999999999999999999999987665544    245578889999987888888


Q ss_pred             HHHHHHHHHhhhhhch------HHHHh-----hHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          532 FNVAKVLQSLIPIVDQ------SMVEK-----TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       532 ~~~~~~l~~l~~~~~~------~~~~~-----~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ..++.++..+......      ..+..     .-+..+..|......+   ...+|++.+.++.+.
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~---Iy~~A~~II~~yf~~  487 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE---IYKKAYKIIDTYFSE  487 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH---HHHHHHHHHHHhcCC
Confidence            8888888887654211      11111     1234444455555544   455566666666653

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.7e-11  Score=128.00  Aligned_cols=529  Identities=16%  Similarity=0.141  Sum_probs=324.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhh----hhhhhhhhhhccCCcHH-HHHHHHHHhccccccCCCcchHh
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSENNDDDDE-VLLAMAEELGVFIPYVGGVEHAH   85 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~----~~~l~p~l~~~~~~~~~-v~~~~~~~l~~l~~~~~~~~~~~   85 (587)
                      .+.|...+.|+++..|.++.--+-.+.+.+|....    .+++...+...+.+++| .+..+++-||-.-.. |+.....
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel-gd~~~k~  898 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL-GDSSLKK  898 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec-CCchhHH
Confidence            35666678899999999987666666677763222    23555555565555555 566667777654432 4444344


Q ss_pred             hhHHH-Hhhhhcch--------hhHH-------------HHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcch
Q 007842           86 VLLPP-LETLCTVE--------ETCV-------------RDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTAR  142 (587)
Q Consensus        86 ~l~~~-l~~l~~~~--------~~~v-------------r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r  142 (587)
                      .+..- +..+....        +..+             .-...+-|..++..++..    .++..+.+++++. .|+.|
T Consensus       899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP----dLVYKFM~LAnh~A~wnSk  974 (1702)
T KOG0915|consen  899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP----DLVYKFMQLANHNATWNSK  974 (1702)
T ss_pred             HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh----HHHHHHHHHhhhhchhhcc
Confidence            44433 22333211        0000             111223334444444432    3444455666654 67777


Q ss_pred             hhHHhhhHhhcCCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchh
Q 007842          143 VSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDS  217 (587)
Q Consensus       143 ~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~  217 (587)
                      ..|+--++.++....+   ++.+.++|-|...--||++.|+.+.....+.+...-..  +.+...|+.-+..-+.+..|.
T Consensus       975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen  975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWR 1054 (1702)
T ss_pred             cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHH
Confidence            7777677777766543   37889999999999999999999988887777654211  344455555556667889999


Q ss_pred             HHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHH---HHHHHhCCCc-------cccchHHH
Q 007842          218 VRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLY---ELCEAVGPEP-------TRMDLVPA  284 (587)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~---~~~~~~~~~~-------~~~~l~~~  284 (587)
                      ||.+++-++..+.+.-+.+   ...++++..+.+..+|-...||.++-.+..   +++-..+...       ....++|.
T Consensus      1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPf 1134 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPF 1134 (1702)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence            9999999999988765543   234567777778888888889988765544   4443333211       12235555


Q ss_pred             HHH-hcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHcc------------ccc
Q 007842          285 YVR-LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGM------------APL  349 (587)
Q Consensus       285 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l------------~~~  349 (587)
                      +.. ..-+.-.+||..++..+..+.+.-|..  .+.++++|.+.+....-++.|-...+--+.++            +..
T Consensus      1135 Ll~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aks 1214 (1702)
T KOG0915|consen 1135 LLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKS 1214 (1702)
T ss_pred             HhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcC
Confidence            543 223556899999999999999988875  56688888888877665554433222111111            000


Q ss_pred             cc------------hhHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHH
Q 007842          350 LG------------KDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVR  414 (587)
Q Consensus       350 ~~------------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR  414 (587)
                      .+            ....++.++|.+.++++.. .-..|.+++..+..+...+|.+  .+...++..+...++|.+..+|
T Consensus      1215 spmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1215 SPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred             CcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence            00            1234677888888888765 3467788888888888777765  3456777888888899999999


Q ss_pred             HHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhH
Q 007842          415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLY  491 (587)
Q Consensus       415 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~  491 (587)
                      .+...+++.+++.-.++.+.+.+-..+-.++.+.+. .+..++..+..+.+ +..+   ...+.++|.++=...+.....
T Consensus      1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian-~s~e~Lkn~asaILPLiFLa~~ee~Ka~ 1372 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIAN-YSQEMLKNYASAILPLIFLAMHEEEKAN 1372 (1702)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHH-hhHHHHHhhHHHHHHHHHHHHhHHHHHH
Confidence            999999999999877766655444444444444333 22333333333322 2222   145778887754333321111


Q ss_pred             HHHHHHHHHHhhc-ccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          492 RMTILRAISLLAP-VMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       492 R~~a~~~l~~l~~-~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      ..--=+....+.. ..|.-  ...+.+.+.+.+..++..+.+|..+++++..+++...
T Consensus      1373 q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1373 QELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred             HHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence            1111122223322 11111  1234455666677788789999999999998887643

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=7.6e-12  Score=122.09  Aligned_cols=488  Identities=16%  Similarity=0.127  Sum_probs=299.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~   89 (587)
                      -..|...|.|.......+|++.+-.+. +-|.+  ...+.|-++. ....+.+|++-+---|-+.++.  .++..-.=+.
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~i-A~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSIn  111 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALI-AKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSIN  111 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHH-hcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHH
Confidence            355666677766556666766665331 12322  3355555544 3455667766655555444431  1121112245


Q ss_pred             HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007842           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~  169 (587)
                      .++.-+.|+|+.+|-.|+++|..+--        ..+.                                  .-++-.+.
T Consensus       112 tfQk~L~DpN~LiRasALRvlSsIRv--------p~Ia----------------------------------PI~llAIk  149 (968)
T KOG1060|consen  112 TFQKALKDPNQLIRASALRVLSSIRV--------PMIA----------------------------------PIMLLAIK  149 (968)
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHhcch--------hhHH----------------------------------HHHHHHHH
Confidence            56677777777777777777665421        1122                                  22333445


Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHH---HH
Q 007842          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP---VI  246 (587)
Q Consensus       170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~---~l  246 (587)
                      ++..|+++.||+.++.++.++...-  +.....+...+..++.|..+-|--.|+-++..++.   +  ..+.+-+   .+
T Consensus       150 ~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---e--rldLIHknyrkl  222 (968)
T KOG1060|consen  150 KAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---E--RLDLIHKNYRKL  222 (968)
T ss_pred             HHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---h--HHHHhhHHHHHH
Confidence            5667777777777777777776652  23334677777777777777776666666655432   1  1222222   23


Q ss_pred             HHhccCCcHHHHHHHHHHHHHHHHHh-CC------------------------------CccccchHHHHHHhcCCChHH
Q 007842          247 VNFSQDKSWRVRYMVANQLYELCEAV-GP------------------------------EPTRMDLVPAYVRLLRDNEAE  295 (587)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~~~~~~-~~------------------------------~~~~~~l~~~l~~~l~d~~~~  295 (587)
                      .+++.|-+..-+...+..|.+.+..- ..                              +....-++.....++.+.++.
T Consensus       223 C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s  302 (968)
T KOG1060|consen  223 CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS  302 (968)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH
Confidence            34444554445555666666666531 10                              001112555556677888888


Q ss_pred             HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCC-hH
Q 007842          296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF-PD  373 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~-~~  373 (587)
                      |-.+++.++..++...   . ...+...+.+++. .+..+|......+..++...     ...+.|.+.++.- ..+ ..
T Consensus       303 VVmA~aql~y~lAP~~---~-~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~-----~~lF~P~lKsFfv~ssDp~~  372 (968)
T KOG1060|consen  303 VVMAVAQLFYHLAPKN---Q-VTKIAKALVRLLR-SNREVQYVVLQNIATISIKR-----PTLFEPHLKSFFVRSSDPTQ  372 (968)
T ss_pred             HHHHHHhHHHhhCCHH---H-HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcc-----hhhhhhhhhceEeecCCHHH
Confidence            8888888888776532   1 2445666666654 35567777777776665332     1234555555432 222 34


Q ss_pred             HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHH
Q 007842          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  453 (587)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      ++.--++.|..++..-    ....+++.+..++++.+.++-.+++++++.++...+.  ..+.++..++.++.+.+..|-
T Consensus       373 vk~lKleiLs~La~es----ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv  446 (968)
T KOG1060|consen  373 VKILKLEILSNLANES----NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVV  446 (968)
T ss_pred             HHHHHHHHHHHHhhhc----cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhH
Confidence            4444455555555432    2357788888889988888999999999999987764  356788889999999999999


Q ss_pred             HHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHH
Q 007842          454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~  532 (587)
                      ..++..+..+.+.-..+.  ..++.++.+++..- -+.-|.+.++.+|..+.....  +.+.++-.+.+-+.+..+.||.
T Consensus       447 ~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKl  522 (968)
T KOG1060|consen  447 AEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKL  522 (968)
T ss_pred             HHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhH
Confidence            999999999998655432  34566666655332 356788888888888765432  4566677777788999999999


Q ss_pred             HHHHHHHHhhhhhchHHHHhhHHHHHHHh-cCCCCccHHHHHH
Q 007842          533 NVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFAT  574 (587)
Q Consensus       533 ~~~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~d~~Vr~~a~  574 (587)
                      .++..-..+...-..+  .+.+...+-++ --|...++|..+.
T Consensus       523 QILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRaR  563 (968)
T KOG1060|consen  523 QILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRAR  563 (968)
T ss_pred             HHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHHH
Confidence            9999888876442222  23333333443 4588888888775

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.8e-10  Score=115.52  Aligned_cols=424  Identities=19%  Similarity=0.156  Sum_probs=265.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh--cChh
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL--LEPQ  236 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~--~~~~  236 (587)
                      ++.+.++..+...++|.+..||.++++.+|.+...++.+-..+.+-..+..+.--+++..-..++-+++.++..  +.+.
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            46678888889999999999999999999999999874333333333333222223456666888888888754  2222


Q ss_pred             hhhhchHHHHHHhccC--------CcHHHHHHHHHHHHHHHHHhCCCcccc---chHH-HHHHhcCCChHHHHHHHHHhH
Q 007842          237 DCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRM---DLVP-AYVRLLRDNEAEVRIAAAGKV  304 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d--------~~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l  304 (587)
                       ....++|++.+.+.=        ....||.+|+-.+-.++....+....+   .+.+ .+...+=|++-++|.+|..++
T Consensus       417 -~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  417 -LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             -HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence             456788888776642        245699999999999988766543322   1222 234455799999999999998


Q ss_pred             HHHHhhhCHH------------------------------HHHHhHhHHHHHhc----cCCcHHHHHHHHHHHHcccccc
Q 007842          305 TKFCRILNPE------------------------------LAIQHILPCVKELS----SDSSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       305 ~~l~~~~~~~------------------------------~~~~~i~~~l~~~~----~d~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .+.....++-                              .+....-|.+..++    .+-+..+|..++.++.++...-
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~  575 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE  575 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence            7765543210                              01111223333333    3345688999999999977554


Q ss_pred             chhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h-hHHhh---HHHHHHHHhcCC--ChHHHHH
Q 007842          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D-LLSQS---LLPAIVELAEDR--HWRVRLA  416 (587)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~-~~~~~---~l~~l~~~~~~~--~~~vR~~  416 (587)
                      ++ ...+..+|.++...-..+...|.+...+.+.+....-.        . .....   ++|.+....-..  ..-+|.+
T Consensus       576 pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~  654 (1133)
T KOG1943|consen  576 PK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA  654 (1133)
T ss_pred             HH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence            43 33445566666666666788888877777766543211        0 01111   233332221111  1345666


Q ss_pred             HHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCC-chh
Q 007842          417 IIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNP-HYL  490 (587)
Q Consensus       417 ~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~-~~~  490 (587)
                      ..+.+..+.-.-   ..+.+.+....++.+.+.+++ .+|.+|..+++.++..+-  .+.....++...+..+.++ +..
T Consensus       655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~  733 (1133)
T KOG1943|consen  655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER  733 (1133)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence            666666554321   123444545555666666666 899999999999998652  2222233555555545554 788


Q ss_pred             HHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhch-------HHHHhhHHHHHHHhc
Q 007842          491 YRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELT  562 (587)
Q Consensus       491 ~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~  562 (587)
                      +|.....+++.+....-.-...+.+...++... .|..+.-|...+.++..++...+.       +.+.+.++.++..+.
T Consensus       734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt  813 (1133)
T KOG1943|consen  734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT  813 (1133)
T ss_pred             HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence            999988888887632222122334444444433 334888999999999998877662       356677888888888


Q ss_pred             CCCCcc----HHHHHHHHHHHHHHhhc
Q 007842          563 EDPDVD----VRFFATQAIQSIDHVMM  585 (587)
Q Consensus       563 ~d~d~~----Vr~~a~~al~~l~~~~~  585 (587)
                      .|...|    ||..|.+|+..+--.+.
T Consensus       814 td~rGDVGswVReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  814 TDSRGDVGSWVREAAMKALSSLLDTLS  840 (1133)
T ss_pred             cccCccHHHHHHHHHHHHHHhhhhhhc
Confidence            888776    58888888887766554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=6.3e-13  Score=126.76  Aligned_cols=330  Identities=17%  Similarity=0.155  Sum_probs=241.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHH
Q 007842          252 DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC  323 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~  323 (587)
                      ..+...+..+...+-.+...-..    ......++|.++.++. +.++.+|..|+.+|..++......   ......+|.
T Consensus        77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~  156 (514)
T KOG0166|consen   77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI  156 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence            33444455555555554432221    1112368899999886 667999999999999998754332   223457899


Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccch--hH-HHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchh---hHHh
Q 007842          324 VKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID---LLSQ  396 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~  396 (587)
                      +..++.+++..|++.++++|++++...+.  +. ....+++.+..++..... .....+.++|..++..-.+.   ....
T Consensus       157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~  236 (514)
T KOG0166|consen  157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA  236 (514)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence            99999999999999999999999854321  11 223456667777776654 67788999999998765321   3346


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--
Q 007842          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--  471 (587)
Q Consensus       397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--  471 (587)
                      .++|.+..++.+.+..+...++.++.++......   -.....+.|.+..+|...+..|+..|+.++|+++.  |.+.  
T Consensus       237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QT  314 (514)
T KOG0166|consen  237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQT  314 (514)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHH
Confidence            7899999999999999999999999988754221   11223467889999999999999999999999764  3332  


Q ss_pred             ---HhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          472 ---AMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       472 ---~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                         .....+|.+..++. ++...+|..|+++++++...-..   ..+...++|.++.+++..+..+|..|+++++++...
T Consensus       315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence               33567889988877 66677999999999999862221   124567999999999999999999999999999876


Q ss_pred             hchHH----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          545 VDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       545 ~~~~~----~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      -.++.    +...+++.+-.++.-+|.++-..+..+++.+-++
T Consensus       395 g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  395 GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            54442    2344667777777888888877777777777654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.8e-11  Score=118.22  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  516 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il  516 (587)
                      +++-+...+.+.+.++-.++++++|..+...+.  ..+..+..++.++.+.+..|-..++..|..+.+.-+.+.  .+++
T Consensus       393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii  468 (968)
T KOG1060|consen  393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEIL  468 (968)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHH
Confidence            444455555666666666667777766665543  345566666666666666666667667766665433321  2355


Q ss_pred             HHHHhhcCC-CChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842          517 PVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ  575 (587)
Q Consensus       517 ~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~  575 (587)
                      ..+.+++.. ..+..|...++.++..+...+  .+...++..+.+-..|+...||.....
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILn  526 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILN  526 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHH
Confidence            555555532 356666666666666665532  233455555555556777777665544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.5e-12  Score=115.75  Aligned_cols=383  Identities=14%  Similarity=0.128  Sum_probs=264.0

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhh---HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC  238 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  238 (587)
                      .+....+..++++.++.++.+++.++|+++-..+.....-   -+-+++.++..|... ||..++.++-.++..-.....
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~ve-vqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVE-VQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcE-EEeeehhhhhhhhccccchhh
Confidence            3444455567788999999999999999887766543322   244577777777654 677778888777765222111


Q ss_pred             --hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 007842          239 --VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (587)
Q Consensus       239 --~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                        ..--+..+.++.+.++.+||+.+..++..+......  ......-+|.++.+++..+..+|..|..+++.++-.-...
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence              111233444578888899999999999887765432  3334457899999999999999999999999887532221


Q ss_pred             ----HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh
Q 007842          315 ----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       315 ----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (587)
                          ...++++|.+..++.|++++++..+..+++.++..-.  .+....--+|.+.++++++.-..-.+.+-++..+.-+
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence                1235689999999999999999999999999985321  1222334579999999888765555555666555433


Q ss_pred             hchhhH--HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842          389 IGIDLL--SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (587)
Q Consensus       389 ~~~~~~--~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      -+.+..  ...++..+..++. ..+..++..+...+-.++....   ...+...-+|.+..++-|..-+||.....+++.
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence            332211  1223334444443 3455677777777777765321   223334467888888999999999998888888


Q ss_pred             HHHH--hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH------H--HHhhHHHHHHhhcCCCChhHHH
Q 007842          463 LAEE--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE------I--TCSRLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       463 l~~~--~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~------~--~~~~il~~l~~~l~d~~~~vR~  532 (587)
                      +.-.  ....+....++|.+..+..+.+..+|-.+..++.++......-      |  -...+-..+.+.+.+....+|.
T Consensus       403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h  482 (550)
T KOG4224|consen  403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH  482 (550)
T ss_pred             HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence            7642  1222334568899999999999999999999999998643320      0  0134556677777777888888


Q ss_pred             HHHHHHHHhhhhh
Q 007842          533 NVAKVLQSLIPIV  545 (587)
Q Consensus       533 ~~~~~l~~l~~~~  545 (587)
                      .+.+++.++.+..
T Consensus       483 ia~wTI~qLle~h  495 (550)
T KOG4224|consen  483 IARWTIQQLLEDH  495 (550)
T ss_pred             HHHHHHHHHHHhC
Confidence            8888888887653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.52  E-value=1.1e-10  Score=117.11  Aligned_cols=370  Identities=17%  Similarity=0.187  Sum_probs=249.7

Q ss_pred             hhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHH
Q 007842          211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVR  287 (587)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~  287 (587)
                      +++.+.+.-..++.+|..+.....+....+.+.+.+...+.++++.||..+++.++.+...-+.   -.....+++.+..
T Consensus        47 L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~  126 (503)
T PF10508_consen   47 LNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ  126 (503)
T ss_pred             HhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH
Confidence            3344444456777888888887777666788899999999999999999999998887653211   1234579999999


Q ss_pred             hcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH---HHHhHHHH
Q 007842          288 LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPI  362 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~  362 (587)
                      ++.|++..|...|+++|..++..-..-  .+.+...+.+..++..++..+|.-+.+.+..++..-....   ...-+++.
T Consensus       127 ~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~  206 (503)
T PF10508_consen  127 CLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL  206 (503)
T ss_pred             HHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence            999999999999999999998743221  1122337778888877788889889998888875543211   12237888


Q ss_pred             HHHhhcCCChHHHHHHHHhhhhhhhhhc-hhhH-HhhHHHHHHHHhcCC--ChHHH----HHHHHHHHHHHHhhChhhh-
Q 007842          363 FLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQLGVGFF-  433 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~-~~~~l~~l~~~~~~~--~~~vR----~~~~~~l~~l~~~~~~~~~-  433 (587)
                      +...+++++.-++.++++.+..++..-. .+.+ ...+++.+.+.+.+.  +++.+    -..+++++.++.. .+..+ 
T Consensus       207 ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~  285 (503)
T PF10508_consen  207 LLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVL  285 (503)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHH
Confidence            8899999889999999999999987322 1211 235677777766442  33122    1233555555553 22222 


Q ss_pred             --HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh-ChHHH-------hhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          434 --DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWA-------MQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       434 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                        .+.++..+...+.+.+...+..|+.++|.++... |....       ...++..+..........+|..++.+++.+.
T Consensus       286 ~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il  365 (503)
T PF10508_consen  286 ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL  365 (503)
T ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence              2556667778889999999999999999998643 22222       1234444455556667789999999999995


Q ss_pred             cccCh-----------HHH---HhhHHH-HHHhhcCCCChhHHHHHHHHHHHhhhhhchH-HH--HhhHHHHHHHhcCCC
Q 007842          504 PVMGS-----------EIT---CSRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDP  565 (587)
Q Consensus       504 ~~~~~-----------~~~---~~~il~-~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~  565 (587)
                      .....           .|+   ...-.. .+...++.|-+++|.++...+..++.+-... .+  .+.++..+..-..++
T Consensus       366 ~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~  445 (503)
T PF10508_consen  366 TSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTET  445 (503)
T ss_pred             hcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCC
Confidence            43221           111   111122 7778889999999999999999998764322 11  133444444444566


Q ss_pred             CccHHHHHHHHHHHHH
Q 007842          566 DVDVRFFATQAIQSID  581 (587)
Q Consensus       566 d~~Vr~~a~~al~~l~  581 (587)
                      +.+.+..=...+..+.
T Consensus       446 ~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  446 TKEGKEAKYDIIKALA  461 (503)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            6666655555555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.49  E-value=6.7e-10  Score=111.45  Aligned_cols=389  Identities=14%  Similarity=0.140  Sum_probs=239.8

Q ss_pred             HHHHhcCCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHH
Q 007842          130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMS  205 (587)
Q Consensus       130 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~  205 (587)
                      +....++.+...-..++.++..+.....+. ....+.+.+..++.++++.||..++..++.++..-..   -.....+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            444444433333345667777777766654 5788889999999999999999999999888765321   113356888


Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---Cccccc
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMD  280 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~  280 (587)
                      .+...+.|++..|...|+.++..++..-..-  .+.+.+.+.+.+++..++..+|.-+++.+..++..-..   ......
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            9999999999999999999999998753321  12233477788888777788888888888888753221   111235


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH--HHhHhHHHHHhccCCc--H---HHH-HHHHHHHHccccccch
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSS--Q---HVR-SALASVIMGMAPLLGK  352 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~--~---~vr-~~a~~~l~~l~~~~~~  352 (587)
                      +++.+...++++|.-+|..+++.+..++..-....+  ...+++.+...+.+..  +   .+. -.....++.++...+.
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~  282 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ  282 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence            889999999998999999999999999984322222  1235555655554322  2   111 2223445555544222


Q ss_pred             hH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH--------hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842          353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~l~~~~~~~~~~vR~~~~~~l~  422 (587)
                      ..  ..+.++..+..++.+.++..+..|+.+++.++.........        +.++..+..........+|..++.+++
T Consensus       283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~  362 (503)
T PF10508_consen  283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA  362 (503)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            11  23456666677788889999999999999988654322211        122333333334444556666666666


Q ss_pred             HHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh
Q 007842          423 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (587)
Q Consensus       423 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l  502 (587)
                      .+...... .-.+.+.                   .....+...++...    ....+..+++.|-+.+|.++...+..+
T Consensus       363 ~il~~~~~-~~~~~i~-------------------~~~~~w~~~~~~~~----~~~~l~~~~~qPF~elr~a~~~~l~~l  418 (503)
T PF10508_consen  363 SILTSGTD-RQDNDIL-------------------SITESWYESLSGSP----LSNLLMSLLKQPFPELRCAAYRLLQAL  418 (503)
T ss_pred             HHHhcCCC-CchHHHH-------------------HHHHHHHHHhcCCc----hHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            55432211 0011111                   22223333333221    111666778888899999999999998


Q ss_pred             hcccCh-HH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          503 APVMGS-EI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       503 ~~~~~~-~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                      +.+-.. ..  ..+.++..+++.-.+++...+..=...+..+.
T Consensus       419 ~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  419 AAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             hcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            864311 11  13456666766666666655544444444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.2e-10  Score=114.50  Aligned_cols=437  Identities=13%  Similarity=0.126  Sum_probs=278.0

Q ss_pred             HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhh
Q 007842          122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT  201 (587)
Q Consensus       122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  201 (587)
                      ....+.+++......+-...|  -+.+.-..+....|+.....++.+..-+.|++|.+|..|...++.+-    -+....
T Consensus        47 vSslF~dvvk~~~T~dlelKK--lvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~e  120 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKK--LVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITE  120 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHH--HHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHH
Confidence            334444444444444422222  22333233444445556677888888899999999999988877542    355677


Q ss_pred             HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccch
Q 007842          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (587)
Q Consensus       202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l  281 (587)
                      ++...+....+|+++.||..++-+...+...-+......-+.+.+..+..|+++.|-..|..++..+.+.-.........
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~  200 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN  200 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence            78888888999999999999988888776654444445568888999999999999999999999888764322211112


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--hHHHHh
Q 007842          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQ  358 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~  358 (587)
                      .+.+..++..-+...-.+-+..+..+....+++. -...+...+...+.+.+..|--.+.+.+-.....+..  +.+...
T Consensus       201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K  280 (734)
T KOG1061|consen  201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKK  280 (734)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223322223333344445555555444321 1134455555555666666655555555554443332  223344


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--------------------------------hhhHHhhHHHHHHHHh
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELA  406 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------------------------~~~~~~~~l~~l~~~~  406 (587)
                      +.|.+..++.... ++...++..+.-+.....                                .+...++++.-+.+..
T Consensus       281 ~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYa  359 (734)
T KOG1061|consen  281 VAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYA  359 (734)
T ss_pred             hcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Confidence            4455555444443 555555555544432211                                0122345667777777


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  486 (587)
                      .+.+...-..++++++.++-.....   ..+++.++.+++-...-|-+.++..+..+.+.+...+  +.+++.+...+..
T Consensus       360 tevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~s  434 (734)
T KOG1061|consen  360 TEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDS  434 (734)
T ss_pred             hhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccc
Confidence            7778777777889998887655433   5688889999888888888888889999988876643  4555555443332


Q ss_pred             -CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCC
Q 007842          487 -PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP  565 (587)
Q Consensus       487 -~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~  565 (587)
                       .++..|.+.++.+|.-+..+...   ..++..+++...|.+..|+...+.+.-.+..+.+. ..++.+-..|.....|.
T Consensus       435 l~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~  510 (734)
T KOG1061|consen  435 LQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADT  510 (734)
T ss_pred             cCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccc
Confidence             36779999999999999888764   67888999999999999999999998887766554 23334444444455555


Q ss_pred             -CccHHHHHH
Q 007842          566 -DVDVRFFAT  574 (587)
Q Consensus       566 -d~~Vr~~a~  574 (587)
                       ++++|..+.
T Consensus       511 ~~~dlrDr~l  520 (734)
T KOG1061|consen  511 DNPDLRDRGL  520 (734)
T ss_pred             cChhhhhhHH
Confidence             458888765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=5.9e-12  Score=112.05  Aligned_cols=375  Identities=17%  Similarity=0.150  Sum_probs=248.3

Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh---hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccc
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMD  280 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~  280 (587)
                      .+..+++..++.+..++...++.++-.......   ..-+-+++.+...| +-.||..++.++..++..-...  .....
T Consensus        89 pvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sG  167 (550)
T KOG4224|consen   89 PVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSG  167 (550)
T ss_pred             HHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhcc
Confidence            344456777788888899999988876654322   12234566666665 4578888999999888752211  11123


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH--HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----H
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----A  354 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~  354 (587)
                      -+..+.++-+.++..+|..+..+|..+........  +...-+|.+..+++..+..+|..++.+++.++-.-...    .
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq  247 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ  247 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence            35556668888999999999999988876543321  22345799999999999999999999999987432111    1


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~  432 (587)
                      ..+.++|.+..++.|.++.++..|..+|..+...-.  .+.....-+|.+.++++++.-..-.+-.-++..++-+-+.+.
T Consensus       248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~  327 (550)
T KOG4224|consen  248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV  327 (550)
T ss_pred             cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence            234689999999999999999999999998875422  222234458999999988775554444444544443322221


Q ss_pred             h--HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh--hc
Q 007842          433 F--DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--AP  504 (587)
Q Consensus       433 ~--~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l--~~  504 (587)
                      .  ...++..+..++.- .+.+++..|..+|..++....   ..++....+|.+.+++-|..-.+|...-.++..+  ..
T Consensus       328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d  407 (550)
T KOG4224|consen  328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND  407 (550)
T ss_pred             ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence            1  11233334555543 455699999999999976332   2334566899999999888666665555555554  44


Q ss_pred             ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------HHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007842          505 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDVRFFATQA  576 (587)
Q Consensus       505 ~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~i~~~l~~l~~d~d~~Vr~~a~~a  576 (587)
                      ..........++|.++.++.+.+.+||-+++.+|.+++.....=        ...+.+...|..++...+..+|..+...
T Consensus       408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wT  487 (550)
T KOG4224|consen  408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWT  487 (550)
T ss_pred             ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44444445678999999999999999999999999998753210        0113344445555555555666666555


Q ss_pred             HHHHH
Q 007842          577 IQSID  581 (587)
Q Consensus       577 l~~l~  581 (587)
                      +.++.
T Consensus       488 I~qLl  492 (550)
T KOG4224|consen  488 IQQLL  492 (550)
T ss_pred             HHHHH
Confidence            55443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.44  E-value=1.7e-09  Score=102.36  Aligned_cols=468  Identities=11%  Similarity=0.045  Sum_probs=279.6

Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC----CCCcchhhHHhhhHhhcCCCChH
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG----EWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~----~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                      +..++--+.++.++.|+..|+....++.++...-      +.++-....+++|    -...+|-.|+..+....+   .+
T Consensus        63 at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t------edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid---~~  133 (898)
T COG5240          63 ATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT------EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVID---GE  133 (898)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcC---cc
Confidence            3445555678889999999999988888876432      2222223333333    233556566654433333   33


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhh------------CCchhHHHHHHHH
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQ------------DDQDSVRLLAVEG  225 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~------------d~~~~vr~~a~~~  225 (587)
                      ....+-.++.+..-++++.+|.++.-.-..+......  ..+.+........+.+            ..++.....|+..
T Consensus       134 tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGl  213 (898)
T COG5240         134 TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGL  213 (898)
T ss_pred             hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHH
Confidence            4444555666777788888887765544433322100  0011111111111110            1112223333333


Q ss_pred             HHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842          226 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (587)
                      |-.+-+.-  ......++..+..-..-.+.......++....+...  +......+.|.+...++|.-..|...+++++.
T Consensus       214 Lyq~kr~d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~--n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~  289 (898)
T COG5240         214 LYQSKRTD--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE--NSQALLQLRPFLNSWLSDKFEMVFLEAARAVC  289 (898)
T ss_pred             HHHHhccc--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHh--ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence            33222110  001111111111111001111111111222222211  11223467888888899988999999999999


Q ss_pred             HHHhhh-CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          306 KFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       306 ~l~~~~-~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      .++..- +++ +....+..+..+++.+....|.+|...+.+++...+....  ..-+-+..++.|.+..+-..|+..|-+
T Consensus       290 ~~~~~nv~~~-~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITtLLK  366 (898)
T COG5240         290 ALSEENVGSQ-FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITTLLK  366 (898)
T ss_pred             HHHHhccCHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHHHHH
Confidence            987654 544 4477788889999999999999999999999876553211  122446778888888777666666544


Q ss_pred             hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc-CCCchHHHHHHHHHHHHH
Q 007842          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRL  463 (587)
Q Consensus       385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l  463 (587)
                      -    |.+...+.++..+..++.|-+...+..++.++..++..++...  ..++..+...+ +..-.+-+.+++.++..+
T Consensus       367 T----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~  440 (898)
T COG5240         367 T----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDA  440 (898)
T ss_pred             c----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3    3344446777777778877777777778888888887765432  23444444433 456678899999999988


Q ss_pred             HHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842          464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       464 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~  539 (587)
                      ++....  ..+..+..+.+.+.|..+  -+.+++.++-++...+.    ..+..+++.-++    =.+..||.+|+.+|.
T Consensus       441 ~~~~p~--skEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLs  512 (898)
T COG5240         441 MENDPD--SKERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALS  512 (898)
T ss_pred             HhhCch--HHHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHH
Confidence            876543  246677777787877653  45667777777654332    223333433332    357889999999999


Q ss_pred             HhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          540 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       540 ~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .++-........+.+...|.++++|.|.+||..|.-++..+.
T Consensus       513 kf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         513 KFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            988766655566788899999999999999999999988765

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.1e-08  Score=104.25  Aligned_cols=490  Identities=15%  Similarity=0.078  Sum_probs=254.3

Q ss_pred             hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC--CChHHHHH
Q 007842           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDILKTE  163 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~--~~~~~~~~  163 (587)
                      .++..|...++|.|..||-.|++.++.+...++.+-..+.+-..+.-+..-+....-..+|-+++.++..  +.+.....
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d  420 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED  420 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            4445555556677778888888888888777775432222222222111111222223455555554432  23445566


Q ss_pred             HHHHHHHhcCC--------CChHHHHHHHHhHHHHHHhhccchhhhHHHH----HHHHhhhCCchhHHHHHHHHHHHHhh
Q 007842          164 LRSIYTQLCQD--------DMPMVRRSAASNLGKFAATVEPAHLKTDIMS----IFEDLTQDDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       164 l~~~l~~l~~d--------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~----~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (587)
                      ++|++...+.=        ....||.+++..+-.++....+....+.+-.    ++...+-|.+-++|++|..++.....
T Consensus       421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG  500 (1133)
T KOG1943|consen  421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG  500 (1133)
T ss_pred             HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence            77766655432        2356777777777777776655444432222    22333456666777777666654433


Q ss_pred             hcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh-cCCChHHHHHHHHHhHHHHHhh
Q 007842          232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL-LRDNEAEVRIAAAGKVTKFCRI  310 (587)
Q Consensus       232 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                      ..+.   .++-++++. ..+.-+-.-|..+...+......++  .....++..+... +..=+..+|+.++.+|..+...
T Consensus       501 R~~n---~p~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~--~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  501 RQGN---FPHGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFS--GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             cCCC---CCCchhhhh-hcchhhhhhhhhHHHHHhHHHHhhh--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            3221   112222211 1111122233333333333322211  1111222222221 3344678899999999987664


Q ss_pred             hCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-h---------HH--HHhHHHHH-HHhhcCC-ChHHHH
Q 007842          311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D---------AT--IEQLLPIF-LSLLKDE-FPDVRL  376 (587)
Q Consensus       311 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~---------~~--~~~l~~~l-~~~l~d~-~~~vr~  376 (587)
                      . ++......+|.+......++...|.....+.+.+...+.. +         ..  ...++|.+ ...+.-. ..-.|.
T Consensus       575 ~-pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~  653 (1133)
T KOG1943|consen  575 E-PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQ  653 (1133)
T ss_pred             h-HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHH
Confidence            3 3334445667777666667777777776666655432211 0         00  11122222 2222211 134455


Q ss_pred             HHHHhhhhhhhhhc---hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh--ChhhhHHHHHHHHHHhcCCC-ch
Q 007842          377 NIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDK-VY  450 (587)
Q Consensus       377 ~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~-~~  450 (587)
                      ...+.+..+...-.   .+...+.....+.+...+++ .+|.++...++.++...  +.+.....++.-.+..+.+. +.
T Consensus       654 ~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~  732 (1133)
T KOG1943|consen  654 ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEE  732 (1133)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHH
Confidence            55555544432111   11122223333444445666 89999999999887653  22222223444444444444 77


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCC
Q 007842          451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDR  526 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~  526 (587)
                      .+|.....+++.+....-.-...+.+...++...- |-...-|...+.++.++.+.++.   ....+++...+++.++|-
T Consensus       733 ~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddY  812 (1133)
T KOG1943|consen  733 RIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDY  812 (1133)
T ss_pred             HHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence            88888877777765422111123444444444332 32567899999999999887772   222345555555555432


Q ss_pred             --------ChhHHHHHHHHHHHhhhhhc-hHHH----HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          527 --------VPNIKFNVAKVLQSLIPIVD-QSMV----EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       527 --------~~~vR~~~~~~l~~l~~~~~-~~~~----~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                              -.+||.++++++..+..... ++.+    ...++-.+.+-..|+-...|..|+.++.++..+
T Consensus       813 ttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  813 TTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             ccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence                    56899999999998876554 2222    222333333344555556688888888776543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.35  E-value=4.6e-10  Score=108.16  Aligned_cols=278  Identities=23%  Similarity=0.259  Sum_probs=196.1

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  320 (587)
                      ...+.+.+.+.++++.+|..++..++.+..        ...+|.+...+.|.++.||..++.+++.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            456667777778888888888888776553        4678888888888888899888887766542        233


Q ss_pred             hHHHHHhcc-CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC------------hHHHHHHHHhhhhhhh
Q 007842          321 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ  387 (587)
Q Consensus       321 ~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~  387 (587)
                      ++.+..++. |+++.||..++.+++.+....        .++.+...+++..            ..+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            455555555 788899999998888886421        1334445555543            2577778777777654


Q ss_pred             hhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       388 ~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                              +...+.+...+.+....+|..++..++.+....      ..+.+.+...+.|+++.||..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    455677778888888899999988888775432      3456778888899999999999888877643  


Q ss_pred             ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          468 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       468 ~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                            ....+.+...+.+.++.++..+..+.+..-        .....+.+...+.|....+|..+..++..+...   
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---  305 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE---  305 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence                  234566666777788888777777666221        133455666677888899999999988887654   


Q ss_pred             HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          548 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       548 ~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                           ...........+.+..+|..+..++..+
T Consensus       306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         306 -----KAVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence                 2333444456777788888777776554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.1e-08  Score=100.88  Aligned_cols=434  Identities=12%  Similarity=0.082  Sum_probs=249.3

Q ss_pred             hHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHH
Q 007842          125 WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI  203 (587)
Q Consensus       125 ~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  203 (587)
                      +++-++.+..+.| ....+...+-.++.+..-++++....+.|-+.+++++.++.||+.|+.+...+....  +...+.+
T Consensus       103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f  180 (866)
T KOG1062|consen  103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHF  180 (866)
T ss_pred             HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHh
Confidence            4455555555444 333333344445566666778899999999999999999999999999999988875  5667788


Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-----hhhhchHHHHHHhccC-----------CcHHHHHHHHHHHHH
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYE  267 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d-----------~~~~vR~~a~~~l~~  267 (587)
                      .+-...++.+.+..|-.+++..+-.++..-++.     ...+.++..++++...           ++|..+...++.|.-
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI  260 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence            888889999999888888888887777654331     1223333344443321           345555555555554


Q ss_pred             HHHHhCCCccccchHHHHHHhcC--CChHH----HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHH
Q 007842          268 LCEAVGPEPTRMDLVPAYVRLLR--DNEAE----VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS  341 (587)
Q Consensus       268 ~~~~~~~~~~~~~l~~~l~~~l~--d~~~~----vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~  341 (587)
                      ++..  .....+.+-.++-+...  |.+.+    +-..++.++..+-   .+.......+..+-+++.+++-.+|..+..
T Consensus       261 LGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  261 LGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             hcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            4432  11111122222222221  11111    2222222222221   122222333455555566666666666666


Q ss_pred             HHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842          342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l  421 (587)
                      .|..+...-+.  ..+.=-..+..+++|.+..+|..|++....+...-.    ...++..+..++...+...|..++.-+
T Consensus       336 ~L~r~V~~d~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I  409 (866)
T KOG1062|consen  336 MLLRVVQQDPT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKI  409 (866)
T ss_pred             hHHhhhcCCcH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            66655543221  122334567889999999999999998887765432    245566666667767888888888888


Q ss_pred             HHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh-ChHH--HhhhhHHHHHh--hccCCchhHHHHHH
Q 007842          422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEW--AMQHITPQVLE--MINNPHYLYRMTIL  496 (587)
Q Consensus       422 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~l~~~l~~--~l~d~~~~~R~~a~  496 (587)
                      ..+++.+.++.  ...+..+++.+...-.-|+.-+...+-.++..- +...  ....+...+..  ...-+....-+.+.
T Consensus       410 ~~laEkfaP~k--~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~  487 (866)
T KOG1062|consen  410 AELAEKFAPDK--RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS  487 (866)
T ss_pred             HHHHHhcCCcc--hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            88887776542  234555555555544455555555554444322 2211  01111111111  11123455678899


Q ss_pred             HHHHHhhcccCh--------HHHHhhHHHHHHhhcC--CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCC
Q 007842          497 RAISLLAPVMGS--------EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPD  566 (587)
Q Consensus       497 ~~l~~l~~~~~~--------~~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d  566 (587)
                      ++||..++.+-.        ......+...+.+.+.  ..+..+|..++.++..+...+...  .+.+...+..+....|
T Consensus       488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~  565 (866)
T KOG1062|consen  488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLD  565 (866)
T ss_pred             HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccccc
Confidence            999998742211        1112333444444332  224788899999998888766543  3456666666667777


Q ss_pred             ccHHHHHHH
Q 007842          567 VDVRFFATQ  575 (587)
Q Consensus       567 ~~Vr~~a~~  575 (587)
                      -++|..|.+
T Consensus       566 ~elQQRa~E  574 (866)
T KOG1062|consen  566 TELQQRAVE  574 (866)
T ss_pred             HHHHHHHHH
Confidence            777776654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.33  E-value=3.3e-10  Score=100.17  Aligned_cols=340  Identities=13%  Similarity=0.118  Sum_probs=220.6

Q ss_pred             hHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-
Q 007842          242 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-  314 (587)
Q Consensus       242 l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-  314 (587)
                      ++|-+.+++ +....-.+..|+.++.+++.......   ....-+|.|++++.+.+.+||..++.+|+.++..-..  + 
T Consensus       115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~  194 (526)
T COG5064         115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY  194 (526)
T ss_pred             ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence            455555555 33334456678888988887544321   2346799999999999999999999999998753211  1 


Q ss_pred             HHHHhHhHHHHHhccCC--cHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh
Q 007842          315 LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       315 ~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (587)
                      ......+..+..++..+  +...-+.+.+.|++++..-.   ......+.+|++.+++...+++|-..|+++++-+...-
T Consensus       195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~  274 (526)
T COG5064         195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP  274 (526)
T ss_pred             HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence            11123344444444433  34666778888988876432   23356788999999999999999999999999887532


Q ss_pred             chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          390 GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       390 ~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      ...   .+-..+.+.+.+++.+++..+..-++..++.+...  .+.-     .--.++.+..+|+++...+|..|+-+++
T Consensus       275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG--~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS  352 (526)
T COG5064         275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG--SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS  352 (526)
T ss_pred             HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec--CccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence            111   11234457788889998888877777777776542  2211     1224566777789999999999999998


Q ss_pred             HHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC-h-HH----HHhhHHHHHHhhcCCCChhHHH
Q 007842          462 RLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-S-EI----TCSRLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       462 ~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~-~~----~~~~il~~l~~~l~d~~~~vR~  532 (587)
                      ++.......   .....++|.+..++...++.+|..|++++.+...... . +.    +...++..+.+++.-.+..+-.
T Consensus       353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie  432 (526)
T COG5064         353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE  432 (526)
T ss_pred             ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence            886422111   1346789999999999999999999999999865322 1 11    1234555666666544444556


Q ss_pred             HHHHHHHHhhhhhchH------------HHH--hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          533 NVAKVLQSLIPIVDQS------------MVE--KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       533 ~~~~~l~~l~~~~~~~------------~~~--~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .++.++.++...-..+            .+.  ......+..+....+..+   -.+|++.+.+++|.
T Consensus       433 v~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~i---y~KAYsIIe~fFge  497 (526)
T COG5064         433 VALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTI---YDKAYSIIEKFFGE  497 (526)
T ss_pred             hhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHH---HHHHHHHHHHHccc
Confidence            6677777765431110            111  123345555544444444   45566777777664

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.31  E-value=2.3e-08  Score=94.87  Aligned_cols=471  Identities=12%  Similarity=0.078  Sum_probs=268.1

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-CcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~   90 (587)
                      -.+.+..++.|.-.|+..-..+++++.. ..+... ..-..+.+... .++.++..+.+.|-..++  |  +.+..+-.+
T Consensus        68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~-tedvlm-~tssiMkD~~~g~~~~~kp~AiRsL~~Vid--~--~tv~~~er~  141 (898)
T COG5240          68 FAILKLFQHKDLYLRQCVYSAIKELSKL-TEDVLM-GTSSIMKDLNGGVPDDVKPMAIRSLFSVID--G--ETVYDFERY  141 (898)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHhhc-chhhhH-HHHHHHHhhccCCccccccHHHHHHHHhcC--c--chhhhHHHH
Confidence            3466778888888998887777776532 111110 00112222222 233555555555544443  1  333344455


Q ss_pred             HhhhhcchhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCCCC---------cchhhHHhhhHhhcCCCChH
Q 007842           91 LETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWF---------TARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~---------~~r~~a~~~l~~~~~~~~~~  159 (587)
                      +.+..-++.+.+|.+|+..-..+...-..  ..+.++.-.-+..+.+.++.         ..-++-...+|.++..-.. 
T Consensus       142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~-  220 (898)
T COG5240         142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT-  220 (898)
T ss_pred             hhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc-
Confidence            66666788888988887666554321110  11111111222222222211         0111111122222211000 


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHH--HhHHHHHHhhc-cchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAA--SNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~--~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                       -+...--+.+....+. .++...+  ..+......+. +......+.|.+..-++|.-+.|...+++.+.+++...-..
T Consensus       221 -dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~  298 (898)
T COG5240         221 -DKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS  298 (898)
T ss_pred             -cHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence             0111111112222221 2222111  11112222221 24566778888888889988899988888888877654223


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  316 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  316 (587)
                      ......+..+..++..+....|-+|++.+.+++...+....  ..-+-+..++.|.+..+...|+..   +.+. |.+..
T Consensus       299 ~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITt---LLKT-Gt~e~  372 (898)
T COG5240         299 QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITT---LLKT-GTEET  372 (898)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHH---HHHc-Cchhh
Confidence            35666778888888888888999999999999987654322  122445667778776665555444   4443 44444


Q ss_pred             HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh-cCCChHHHHHHHHhhhhhhhhhchhhHH
Q 007842          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~  395 (587)
                      ...++..+..+..|-+...+..++.++..++-.++...  ..++.++...| +.+.-+.+..++.++..+.+.....  .
T Consensus       373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--k  448 (898)
T COG5240         373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--K  448 (898)
T ss_pred             HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--H
Confidence            46777777777777777778888888888877776532  12334444333 3556788899999998888776433  2


Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhh
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH  475 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  475 (587)
                      +..+..+..+++|..+.  +.++..++.+++..+...-....+-.+.+.+-=++.-||.+|+.+|..+.-.....+....
T Consensus       449 EraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s  526 (898)
T COG5240         449 ERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS  526 (898)
T ss_pred             HHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH
Confidence            56677777788776542  2344555555554322211122333344444445678999999999988765544444566


Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      +...+...++|.+..+|..|..++..+-
T Consensus       527 v~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         527 VENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            7777888899999999999998888774

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.31  E-value=2.3e-10  Score=103.49  Aligned_cols=186  Identities=18%  Similarity=0.250  Sum_probs=134.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhhHHH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (587)
Q Consensus       397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      .+.+.+..--.+.+|..|..++..+..+...-.    .+.+.+.   +.+.+...+.|....|-..|+.+++.++..+|.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            344445444577899999999999999887651    1222222   235666778888889999999999999999887


Q ss_pred             HH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhH-HHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          470 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       470 ~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      .+  +.+.++|.+++.+.+++..+|..|..++..+...++.   ...+ .+.+....+++++.+|..++..+..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            64  4678999999999999999999999999999998871   1344 7888889999999999999999999998877


Q ss_pred             --hH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          547 --QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       547 --~~-----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                        ..     ...+.+.+.+.++++|++++||..|..++..+.+..+
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence              11     2346799999999999999999999999999988765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.30  E-value=2.8e-09  Score=102.78  Aligned_cols=186  Identities=25%  Similarity=0.351  Sum_probs=112.5

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (587)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (587)
                      ...+.+..++.++++.+|..+...++.+..        ...+|.+..++.|.++.||..++.+++.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            456667777788888999888888665543        4567788888888888999988887776542        233


Q ss_pred             HHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHh
Q 007842          243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR  309 (587)
Q Consensus       243 ~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~  309 (587)
                      .+.+...++ |+++.||..++..|+.+...        .-+..++..++|..            +.+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            444444444 78899999999998876542        23555555566544            2345444444444432


Q ss_pred             hhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842          310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       310 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (587)
                              +...+.+...+.+....||..++.+++.+....      ..+.+.+...+.+.+..+|..++..++.+.
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence                    222344455555555555555555555554221      233444555555555555555555555443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.30  E-value=7.9e-11  Score=114.77  Aligned_cols=253  Identities=18%  Similarity=0.216  Sum_probs=211.7

Q ss_pred             CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC
Q 007842          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~  409 (587)
                      -++..-|......|......++.+.....++|.+...+.-.+  --...+.-+-.+.+.+....+...++|.+.++++..
T Consensus       265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~  342 (690)
T KOG1243|consen  265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP  342 (690)
T ss_pred             cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence            355666777777777777777777778888898887776443  122233444445555555567788999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch
Q 007842          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY  489 (587)
Q Consensus       410 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  489 (587)
                      +..+|...++.+......+..+.+.+.+.|.+...+.|+++.+|+.++.++..++..++......+++..+..+-.|...
T Consensus       343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~  422 (690)
T KOG1243|consen  343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG  422 (690)
T ss_pred             chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999887778899999888889999


Q ss_pred             hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccH
Q 007842          490 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV  569 (587)
Q Consensus       490 ~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~V  569 (587)
                      .+|....-|+|+++...........+...+.+.++|+...-|.++..++....+.+........++|.+.-+.-|++..|
T Consensus       423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v  502 (690)
T KOG1243|consen  423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV  502 (690)
T ss_pred             cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence            99999999999999887665433333445666799999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 007842          570 RFFATQAIQSIDHVM  584 (587)
Q Consensus       570 r~~a~~al~~l~~~~  584 (587)
                      |..|.+++...-..+
T Consensus       503 r~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  503 RDTAEKAIRQFLEKL  517 (690)
T ss_pred             hhHHHHHHHHHHhhh
Confidence            999999998776544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=4e-09  Score=104.13  Aligned_cols=517  Identities=14%  Similarity=0.130  Sum_probs=309.4

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcH-HHHHHHHHHhccccccCCCcchHh
Q 007842            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAH   85 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~   85 (587)
                      +...+.++.+.+.|.-+..|..|++.+-. ...+|.+  ...+.|=+..+.+.++ +..+.+-.-+.+.+.  +.++..-
T Consensus        11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa-~Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~   85 (734)
T KOG1061|consen   11 KKGEIPELKSQLNSQSKEKRKDAVKKVIA-YMTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAI   85 (734)
T ss_pred             hhhhchHHHHHhhhhhhhhHHHHHHHHHh-cCccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHH
Confidence            34467888888888888899999876643 2445643  2356665555544433 444444444555444  3334444


Q ss_pred             hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-HHHHH
Q 007842           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL  164 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l  164 (587)
                      ..++.+.+=..|++|.+|-.|++.++.+.    -+.+.+.+..-+.+..++++..+|..+.-....++..-.+. ....+
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl  161 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL  161 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence            45666667778999999999988877652    22344555555556777777778877776665655443332 45678


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-hhhchH
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHIL  243 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~  243 (587)
                      .+.+..++.|.+|.|-..+..++..+.+.-.+........+++..++..-+.-.-.+-+.++..++...++.. ....+.
T Consensus       162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~  241 (734)
T KOG1061|consen  162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC  241 (734)
T ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH
Confidence            8999999999999999999999999888754322222222222222222222222334556666666666532 233455


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------  313 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------  313 (587)
                      ..+...+++.+..|-..+.+.+-.....+..  +.....+-|.+..++.... ++...++..+.-+....+.        
T Consensus       242 ~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~  320 (734)
T KOG1061|consen  242 ERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKV  320 (734)
T ss_pred             HHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHe
Confidence            5556666666666666666766666655443  1112234444444444443 7777777766665554321        


Q ss_pred             ------------------------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcC
Q 007842          314 ------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (587)
Q Consensus       314 ------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (587)
                                              .....+++.-+.....+.+.+.-+.++++++.++....+.   +..++.++.+++-
T Consensus       321 Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~  397 (734)
T KOG1061|consen  321 FFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLET  397 (734)
T ss_pred             eeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhh
Confidence                                    1112345556666666777777788888888888665443   5677888888876


Q ss_pred             CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  448 (587)
                      ....|.+.+...+..+...+....  +.+++.+...... .+++.|.+.+..++..+..+..   ..+++..++..+.|+
T Consensus       398 ~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~~dE  472 (734)
T KOG1061|consen  398 KVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENFKDE  472 (734)
T ss_pred             cccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhcccc
Confidence            656666677777777776665432  4455555443333 5788999999999998887754   345677788888888


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccC-CchhHHHHHHHHHHHhhcccChHHHHhhHH---HHHHhhc
Q 007842          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INN-PHYLYRMTILRAISLLAPVMGSEITCSRLL---PVVINAS  523 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d-~~~~~R~~a~~~l~~l~~~~~~~~~~~~il---~~l~~~l  523 (587)
                      ...|+.....+.-++.-..+.  -.+.++..++.. ..| .++.+|-.++.--.-+.  .++....+.+.   |.+....
T Consensus       473 ~~~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs--~~~~~a~~v~~~~kP~is~~~  548 (734)
T KOG1061|consen  473 TAEVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS--EDPLIAKDVVLAEKPLISEET  548 (734)
T ss_pred             hHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh--cCHHHHHHHHhcCCCccccCC
Confidence            888887666554444333222  123445444443 233 35677877776555554  23221111111   3333322


Q ss_pred             CCCChhHHHHHHHHHHHhhhhh
Q 007842          524 KDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      ....+.+-.....-++.++..+
T Consensus       549 ~~~~p~~le~l~~~i~tlssVY  570 (734)
T KOG1061|consen  549 DSLDPTLLEELLCDIGTLSSVY  570 (734)
T ss_pred             CCCCchHHHHHHHhhcccccee
Confidence            2256677777766666666544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.3e-09  Score=104.85  Aligned_cols=278  Identities=15%  Similarity=0.156  Sum_probs=177.3

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc
Q 007842          251 QDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~  329 (587)
                      ++.+...|..+......++..-.+ ......+...+..+..|.+..||..|++++-.+.+.+.-   .+.......+++.
T Consensus       168 ~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~ls  244 (823)
T KOG2259|consen  168 SISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLS  244 (823)
T ss_pred             hcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhc
Confidence            334444555555444433322111 112234555577788889999999999999888873221   1334566678889


Q ss_pred             CCcHHHHHHHHHHHHccccccc--------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          330 DSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      |.+..||.+|++.+..++...+        .....+..+..+...+.|.+..||..|+++|+.+..... +.    +...
T Consensus       245 D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~----i~QT  319 (823)
T KOG2259|consen  245 DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EI----IQQT  319 (823)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HH----HHHH
Confidence            9999999999888777665551        122345667778888999999999999999998765431 11    1112


Q ss_pred             HHH-Hhc-CCChHHHHHHHHHH---HHHHH--hhChhhhH-------HHHH-----HHHHHhcCCCchHHHHHHHHHHHH
Q 007842          402 IVE-LAE-DRHWRVRLAIIEYI---PLLAS--QLGVGFFD-------DKLG-----ALCMQWLQDKVYSIRDAAANNLKR  462 (587)
Q Consensus       402 l~~-~~~-~~~~~vR~~~~~~l---~~l~~--~~~~~~~~-------~~l~-----~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      +-+ ++. +.-|+.....-+.+   +.++.  .++.+.-.       ..++     ..+...++|+-.+||.+|+..++.
T Consensus       320 LdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~  399 (823)
T KOG2259|consen  320 LDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCS  399 (823)
T ss_pred             HHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHH
Confidence            211 111 11222211111111   11110  01111000       1122     336778899999999999999998


Q ss_pred             HHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       463 l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      ++..- +. |....+..+.+|++|....+|..|+.++..++....   ..+..++.++..+.|.+++||.+.-..|+..
T Consensus       400 La~ss-P~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  400 LATSS-PG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHcCC-CC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            87532 22 566778889999999999999999999999987633   3467889999999999999998888877653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=4.1e-06  Score=87.14  Aligned_cols=520  Identities=12%  Similarity=0.092  Sum_probs=304.3

Q ss_pred             CCcHHHHHHHHHHhccccccCCCcchHhhhHHH-HhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc-
Q 007842           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-  135 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-  135 (587)
                      ...+++.+++..++-++.+-  ...+.+.+... +..++.-+-..+-+.++..+..+++.+++ ....++.|-+..++. 
T Consensus       323 s~~~e~~q~a~q~l~~il~~--sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~l  399 (1176)
T KOG1248|consen  323 SLIEELVQAASQSLKEILKE--SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDL  399 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHh
Confidence            34556667777776555431  11122223222 45555555556667777777777777776 334555555554443 


Q ss_pred             --CCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh--
Q 007842          136 --GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT--  211 (587)
Q Consensus       136 --~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~--  211 (587)
                        ++++..+...=..+|......+|+..-.++|+=.  ..+.....|.=..-.|........-..+.++++|+...+.  
T Consensus       400 r~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K  477 (1176)
T KOG1248|consen  400 RASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLK  477 (1176)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHH
Confidence              4444444433344555555555655444444332  1222222332222222222222222345566777665553  


Q ss_pred             ----hCCch---hHHHHHHHHHHHHhhhcC---h-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC------
Q 007842          212 ----QDDQD---SVRLLAVEGCAALGKLLE---P-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------  274 (587)
Q Consensus       212 ----~d~~~---~vr~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------  274 (587)
                          ++...   .++....+.+.-+-.+|.   + ......+.|.+...+... +..|...+..|..+.....+      
T Consensus       478 ~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e  556 (1176)
T KOG1248|consen  478 AKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAE  556 (1176)
T ss_pred             HHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHH
Confidence                11211   122222333322222221   1 222445667766666544 48899999988888775311      


Q ss_pred             -----CccccchHHHHHHhcCCC------hHHHHHHHHHhHH-HHHhhhCHHHHHHhHhHHHHHhccCCcHHH----HHH
Q 007842          275 -----EPTRMDLVPAYVRLLRDN------EAEVRIAAAGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHV----RSA  338 (587)
Q Consensus       275 -----~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~-~l~~~~~~~~~~~~i~~~l~~~~~d~~~~v----r~~  338 (587)
                           ......++|.+.+..+..      ....|...+.... ......+. .....+...+.....+.+..+    +..
T Consensus       557 ~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~s  635 (1176)
T KOG1248|consen  557 NKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLS  635 (1176)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHH
Confidence                 012235788887776533      2344444444444 22332232 223444555555666654433    344


Q ss_pred             HHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHH
Q 007842          339 LASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVR  414 (587)
Q Consensus       339 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR  414 (587)
                      .+..+..++.......+. .+..+.-...+..+..++..+...|..++..-..+    +....+...+.+-+++...-.|
T Consensus       636 lLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~  714 (1176)
T KOG1248|consen  636 LLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQ  714 (1176)
T ss_pred             HHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHH
Confidence            445555555554443332 23333344445557899999999999988762222    2234445555555666777888


Q ss_pred             HHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HH---hChHH---HhhhhHHHHHhhc
Q 007842          415 LAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA--EE---FGPEW---AMQHITPQVLEMI  484 (587)
Q Consensus       415 ~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~--~~---~~~~~---~~~~l~~~l~~~l  484 (587)
                      ...+.++..+.+..+.+.  +....+|-++-.+++.+..-|..|..+|-.+.  ..   .|.+.   ..+.+++.+...+
T Consensus       715 ~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl  794 (1176)
T KOG1248|consen  715 ASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL  794 (1176)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh
Confidence            889999999998887443  23444444444558999999999999988887  32   23322   3455666666655


Q ss_pred             cCCchhHHHHHHHHHHHhhccc---ChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHH
Q 007842          485 NNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCL  558 (587)
Q Consensus       485 ~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l  558 (587)
                      ......++...+-+++.+...+   ....+...++..+.-++...++.+|.+|+..+..++..++..   .+.+.++|.+
T Consensus       795 ~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl  874 (1176)
T KOG1248|consen  795 VGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL  874 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence            4445555555577777776533   334467888888889999999999999999999999998876   4556789999


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          559 VELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       559 ~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      -.++.|....+|.....-|+.+.+..|
T Consensus       875 l~ls~d~k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  875 LALSHDHKIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999987665

>TIGR02270 conserved hypothetical protein

Probab=99.27  E-value=1.4e-09  Score=104.36  Aligned_cols=207  Identities=14%  Similarity=0.055  Sum_probs=91.1

Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHH
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  400 (587)
                      +..+...+.|.++.||..++++|+.+.        .+...+.+..++++.++.||..++.+++....         .-.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~  150 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGP  150 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHH
Confidence            344444455555555555555555443        12333444555555555555555544443111         1122


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 007842          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  480 (587)
Q Consensus       401 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  480 (587)
                      .+...++|+++.+|..++..++.+...        ...|.+...+.|.++.||.+|+..++.+..    .    ...+.+
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l  214 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVC  214 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHH
Confidence            333444455555555555555544321        122333444555555555555555543321    1    112223


Q ss_pred             HhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH
Q 007842          481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE  560 (587)
Q Consensus       481 ~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~  560 (587)
                      .....++....+..+..++...    |.    +.+++.+..+++|+.  +|..++.+++.+...        ..++.|..
T Consensus       215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------~av~~L~~  276 (410)
T TIGR02270       215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGDV--------EAAPWCLE  276 (410)
T ss_pred             HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------chHHHHHH
Confidence            3323333333333333233222    11    244455555555433  555555555554431        34444444


Q ss_pred             hcCCCCccHHHHHHHHHHHH
Q 007842          561 LTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       561 l~~d~d~~Vr~~a~~al~~l  580 (587)
                      .+.|+.  ++..|..++++|
T Consensus       277 ~l~d~~--~aR~A~eA~~~I  294 (410)
T TIGR02270       277 AMREPP--WARLAGEAFSLI  294 (410)
T ss_pred             HhcCcH--HHHHHHHHHHHh
Confidence            444433  555555555544

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.27  E-value=2.8e-07  Score=97.38  Aligned_cols=487  Identities=16%  Similarity=0.145  Sum_probs=282.5

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHh
Q 007842           92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL  171 (587)
Q Consensus        92 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l  171 (587)
                      ...+..+...+|-.|++++..+.+.-+.--..+.+..-+..-..|....+|.+|+.++|.+.-.- ++....+...+..-
T Consensus       822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~er  900 (1692)
T KOG1020|consen  822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQIIER  900 (1692)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHhh
Confidence            33445677899999999999998764433334445555555556677889999999998765443 55666777888888


Q ss_pred             cCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-h----hhhch---H
Q 007842          172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-D----CVAHI---L  243 (587)
Q Consensus       172 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~----~~~~l---~  243 (587)
                      ..|+...||+.++..+..++...+.-....++..-+..-.+|++..+.+.+.+.+-.+.-.-.++ .    ....+   .
T Consensus       901 IlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~  980 (1692)
T KOG1020|consen  901 ILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEV  980 (1692)
T ss_pred             cCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHH
Confidence            89999999999999999999876543333344444444567888888888888887764221111 0    01111   1


Q ss_pred             HHH---HHhccCCcHHHHHHHHHHHHH--HHHHhCCC--ccccchHHHHHHhc------------CCChHHHHH-HHHHh
Q 007842          244 PVI---VNFSQDKSWRVRYMVANQLYE--LCEAVGPE--PTRMDLVPAYVRLL------------RDNEAEVRI-AAAGK  303 (587)
Q Consensus       244 ~~l---~~~~~d~~~~vR~~a~~~l~~--~~~~~~~~--~~~~~l~~~l~~~l------------~d~~~~vr~-~a~~~  303 (587)
                      ..+   ..+..+..+..=...++.-..  ......+.  ......+..+..++            .+++.++|. +++..
T Consensus       981 ~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lst 1060 (1692)
T KOG1020|consen  981 DVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLST 1060 (1692)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHH
Confidence            111   112222221111111000000  00000000  00112222222222            123344554 45556


Q ss_pred             HHHHHhhhCH---HHHHHhHhHHHHHhccC-CcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHHHH
Q 007842          304 VTKFCRILNP---ELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLN  377 (587)
Q Consensus       304 l~~l~~~~~~---~~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (587)
                      |..++...+.   ..+...+.|++..-... ...++-...+..+..+.....  .+.+...+-..+.+.+-..+......
T Consensus      1061 L~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~ 1140 (1692)
T KOG1020|consen 1061 LFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVE 1140 (1692)
T ss_pred             HHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            6666665432   13445677777654322 345666677777666655442  34556666666777766666666777


Q ss_pred             HHHhhhhhhhhhchhh-HHhhHHHHHHHHh---c-C--CC------hHHHHHHHHHHHHHHHhhC--------h------
Q 007842          378 IISKLDQVNQVIGIDL-LSQSLLPAIVELA---E-D--RH------WRVRLAIIEYIPLLASQLG--------V------  430 (587)
Q Consensus       378 a~~~l~~l~~~~~~~~-~~~~~l~~l~~~~---~-~--~~------~~vR~~~~~~l~~l~~~~~--------~------  430 (587)
                      ++.+++.+........ ....+...+...+   + .  ++      +..+. .+-.+|.+++.+.        +      
T Consensus      1141 ~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~ 1219 (1692)
T KOG1020|consen 1141 AVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEG 1219 (1692)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhh
Confidence            8888888876532221 1111111111111   1 1  22      23322 3456777777541        1      


Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch-hH-HHHHHHHHHHhhcc---
Q 007842          431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LY-RMTILRAISLLAPV---  505 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~~-R~~a~~~l~~l~~~---  505 (587)
                      +...+.+...+.-+..+.+..+|..|+..+|.++-.-..-++...+...+...+.+.+. .. +..++..+..+...   
T Consensus      1220 ~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~ 1299 (1692)
T KOG1020|consen 1220 ETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEK 1299 (1692)
T ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence            13445667777777788889999999999999997655444445555555555554432 22 44444444333210   


Q ss_pred             ---------------------------cCh----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhH
Q 007842          506 ---------------------------MGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTI  554 (587)
Q Consensus       506 ---------------------------~~~----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i  554 (587)
                                                 .|.    ......+++.++..+-|.+..+|..+++.+..+..+---.+  ...
T Consensus      1300 ~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP--~~c 1377 (1692)
T KOG1020|consen 1300 KLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP--VHC 1377 (1692)
T ss_pred             HHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc--cch
Confidence                                       011    11345677778888888999999999999988875411011  357


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          555 RPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      +|.|..+.+|+....|..|-.-|..+.+
T Consensus      1378 vPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1378 VPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred             hhhheeecCChHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998888765

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=8.6e-07  Score=86.84  Aligned_cols=407  Identities=14%  Similarity=0.141  Sum_probs=201.3

Q ss_pred             HHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH
Q 007842          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS  205 (587)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  205 (587)
                      +-+-+..++++....+|..|+.++..++-.- |+....-+|-|.+-+.|++|.|..+|...++.++...+.. +. .+-|
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-yL-~LAP  221 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-YL-QLAP  221 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc-cc-cccH
Confidence            3333444444444445555555444443332 2334445666777788888888888888888888775432 22 2345


Q ss_pred             HHHHhhhC-CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH-h--CC-C--ccc
Q 007842          206 IFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-V--GP-E--PTR  278 (587)
Q Consensus       206 ~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~-~--~~-~--~~~  278 (587)
                      .+-.++.+ .+.-+-...++.++++...-|.  .-..++|-+.+++...+.  .....+++..++.. +  |- +  ...
T Consensus       222 ~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asi  297 (877)
T KOG1059|consen  222 LFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASI  297 (877)
T ss_pred             HHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHH
Confidence            54444432 2222334445555555543222  234456666666554321  11222232222221 1  10 1  111


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  358 (587)
                      +-.+.-+..++.|.+++.+...+-+++.++...+...  ..--..+.+++.|.++.+|.-++..+..+..   ++... .
T Consensus       298 qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~-e  371 (877)
T KOG1059|consen  298 QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVS---KKNLM-E  371 (877)
T ss_pred             HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhh---hhhHH-H
Confidence            1234455667788888888888888888887644331  3334566778888888888888887766652   32222 2


Q ss_pred             HHHHHHH-hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---hH
Q 007842          359 LLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD  434 (587)
Q Consensus       359 l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~  434 (587)
                      ++..++. +...+....|...+..+-.++..-.   +         ..+.|-.|-     +..+..+++.-|.+.   ..
T Consensus       372 IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y---------~~ItdFEWY-----lsVlveLa~l~~~~~G~~I~  434 (877)
T KOG1059|consen  372 IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---Y---------QYITDFEWY-----LSVLVELARLEGTRHGSLIA  434 (877)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---h---------hhhhhHHHH-----HHHHHHHHhccccchhhHHH
Confidence            3333333 3333323455444444433332211   0         011121221     222333333222111   11


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh--h-ccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE--M-INNPHYLYRMTILRAISLLAPVMGSEIT  511 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--~-l~d~~~~~R~~a~~~l~~l~~~~~~~~~  511 (587)
                      ++++.+.     =..+.+|..++..+..+...-            +..  . .+..-..+-.+|++++|.++..+...  
T Consensus       435 eQi~Dv~-----iRV~~iR~fsV~~m~~Ll~~~------------~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~--  495 (877)
T KOG1059|consen  435 EQIIDVA-----IRVPSIRPFSVSQMSALLDDP------------LLAGSAQINSQLCEVLYAAAWILGEYSEFVENP--  495 (877)
T ss_pred             HHHHHHh-----eechhhhHhHHHHHHHHHhch------------hhccchhhccchhHHHHHHHHHHHHHHHHhhCH--
Confidence            2222222     134556666655555544310            100  0 11112456667888888887755432  


Q ss_pred             HhhHHHHHHhhcCCC-ChhHH----HHHHHHHHHhhhhhchH-------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842          512 CSRLLPVVINASKDR-VPNIK----FNVAKVLQSLIPIVDQS-------MVEKTIRPCLVELTEDPDVDVRFFATQAIQS  579 (587)
Q Consensus       512 ~~~il~~l~~~l~d~-~~~vR----~~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~  579 (587)
                       ..++..+++--.+- ...+.    .++.+.++.++....+.       .....++..+.++....|-+|+.+|..++.-
T Consensus       496 -~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l  574 (877)
T KOG1059|consen  496 -NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL  574 (877)
T ss_pred             -HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence             33344444332221 12233    34444444555444332       2235566777778888899999998888776


Q ss_pred             HHH
Q 007842          580 IDH  582 (587)
Q Consensus       580 l~~  582 (587)
                      +..
T Consensus       575 i~~  577 (877)
T KOG1059|consen  575 IRL  577 (877)
T ss_pred             HHH
Confidence            543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=5.4e-07  Score=89.46  Aligned_cols=410  Identities=16%  Similarity=0.135  Sum_probs=238.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV  239 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  239 (587)
                      ..--+...+.+=+++++.-|--.|+.++|.++.    ++....+.|.+..+++..++.+|+.|+-+...+....++  ..
T Consensus       104 vllLltNslknDL~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~  177 (866)
T KOG1062|consen  104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LV  177 (866)
T ss_pred             HHHHHHHHHHhhccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HH
Confidence            334455566666777777777777777777764    566788999999999999999999999999888877765  35


Q ss_pred             hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCC---------------ChHHHHHHHHHh
Q 007842          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRD---------------NEAEVRIAAAGK  303 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~  303 (587)
                      +.+.+...+++.+.+..|-..++..+..+|+.-+... ...++++-|+..+++               .+|-++...++.
T Consensus       178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl  257 (866)
T KOG1062|consen  178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL  257 (866)
T ss_pred             HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence            6677778888888888888888888888876522111 112244444433321               245556556666


Q ss_pred             HHHHHhhhCHH-HHHHhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007842          304 VTKFCRILNPE-LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII  379 (587)
Q Consensus       304 l~~l~~~~~~~-~~~~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (587)
                      |.-++..-.+. .....++..+.+-.+.+   -..+-..++.++..+-   ........-+.++-+++...+.++|..++
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaL  334 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVAL  334 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence            66555432211 12222333332222111   1233344444433332   22233344556667777777778888888


Q ss_pred             HhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       380 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +.|..+.+.-.  ...+.--..+.++++|++..+|..+++..-.+.+.-......+.    ++.++...+...|...+.-
T Consensus       335 n~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~e----Ll~fL~~~d~~~k~~~as~  408 (866)
T KOG1062|consen  335 NMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKE----LLEFLESSDEDFKADIASK  408 (866)
T ss_pred             hhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHhccHHHHHHHHHH
Confidence            88877765322  11234455678889999999999999998888776554444444    4445555688899999999


Q ss_pred             HHHHHHHhChH--HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHh--hcCCCChhHHHHHH
Q 007842          460 LKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN--ASKDRVPNIKFNVA  535 (587)
Q Consensus       460 l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~--~l~d~~~~vR~~~~  535 (587)
                      +..+++.+.++  |+.+.++..+...-+--+..+-.+.+..+++-........+ ..+.-.+..  .+.-..+..-..+.
T Consensus       409 I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~-~rLy~a~~~~~~~~is~e~l~qVa~  487 (866)
T KOG1062|consen  409 IAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV-LRLYLALSEDTLLDISQEPLLQVAS  487 (866)
T ss_pred             HHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH-HHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            99999988764  66666555544322212233333444444333221111111 111111111  11112344455677


Q ss_pred             HHHHHhhhhhch--------HHHHhhHHHHHHHhc--CCCCccHHHHHHHHHHHHHHhhc
Q 007842          536 KVLQSLIPIVDQ--------SMVEKTIRPCLVELT--EDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       536 ~~l~~l~~~~~~--------~~~~~~i~~~l~~l~--~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      +++|+-...+-.        ..-.+.+...+.+++  ...+..++.+|..|+-+|..-+.
T Consensus       488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~  547 (866)
T KOG1062|consen  488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH  547 (866)
T ss_pred             HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence            777775522111        112244555555532  23347789999988887765443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.18  E-value=8.2e-10  Score=97.75  Aligned_cols=300  Identities=13%  Similarity=0.099  Sum_probs=192.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---H-HHHHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccchhH---
Q 007842          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E-LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDA---  354 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~-~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~---  354 (587)
                      |-+.+.+.+.+-+.+..+..-+..+...-..   + .+...++|.+.+++. ......+..|++++.++++.-..+.   
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV  153 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV  153 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence            4444434444444444444444444332111   1 122345677777763 3445667788888888876543211   


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--h-hHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC
Q 007842          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~  429 (587)
                      .....+|.+.++|.+.+.+||..++++|+.++.....  + .+....+..+..++.+...  .+-..+.-.++.+++.-.
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn  233 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN  233 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence            1234578888888888889999999998888754321  1 1122334444444444332  333344555666665332


Q ss_pred             hh---hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          430 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       430 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      +.   .-....+|++.+++-..+++|-.-|+-+++.+...-...   .....+.+.+.+++.+++..+..-+++++|++.
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            21   123567899999999999999888888888876522111   122345667889999999999999999999997


Q ss_pred             cccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842          504 PVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAI  577 (587)
Q Consensus       504 ~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al  577 (587)
                      ...+...   ..-.+++.+..++.++..++|..+|++++++.......   .+...+.|.|..+++..+..+|.-|+.|+
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            6433221   23456788888899999999999999999986543222   34467889999999999999999999998


Q ss_pred             HHHHH
Q 007842          578 QSIDH  582 (587)
Q Consensus       578 ~~l~~  582 (587)
                      .....
T Consensus       394 sNats  398 (526)
T COG5064         394 SNATS  398 (526)
T ss_pred             Hhhhc
Confidence            87543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.18  E-value=4e-06  Score=89.03  Aligned_cols=519  Identities=15%  Similarity=0.123  Sum_probs=276.4

Q ss_pred             Cccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchH
Q 007842            7 PLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (587)
Q Consensus         7 ~~~~-~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~   84 (587)
                      +++| +..++-.+..+-...|-.|++.+..+...-..-.+.+++...+.. ..|....||.++.+.+|+++-+  .++..
T Consensus       813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~  890 (1692)
T KOG1020|consen  813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELI  890 (1692)
T ss_pred             hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHH
Confidence            3444 355666688888999999999999987654444555555555544 5677789999999999998763  34666


Q ss_pred             hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHH
Q 007842           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (587)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l  164 (587)
                      .....-+..-+.|+...||+.+++.++.++...+.=.....+.--+.+-.+|+...+...++..+..++=...+..    
T Consensus       891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~----  966 (1692)
T KOG1020|consen  891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEV----  966 (1692)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcc----
Confidence            6666666555668899999999999999998776422222233333333344443344445554444332111100    


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHH--hhccchhhhHHH-HHHHHhh---hCC-chhHHHHHHHHHHHHhhhcChhh
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAA--TVEPAHLKTDIM-SIFEDLT---QDD-QDSVRLLAVEGCAALGKLLEPQD  237 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~--~~~~~~~~~~l~-~~l~~l~---~d~-~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                               +..+.+.+.....+..+..  .++ ..+.+.++ .++....   .+. ...+..+.+.-.-.+...+    
T Consensus       967 ---------~d~~~~~~kI~~~~~vv~~~~d~~-~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~c---- 1032 (1692)
T KOG1020|consen  967 ---------NDQPAKARKISLEVDVVMSQVDLM-NDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHC---- 1032 (1692)
T ss_pred             ---------cccHHHHHhhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHH----
Confidence                     0000010000000000000  000 11111111 1111111   000 1111111111111111110    


Q ss_pred             hhhchHHHHHHhccCCcHHHHHHHH-HHHHHHHHHhCCCcccc---chHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhC
Q 007842          238 CVAHILPVIVNFSQDKSWRVRYMVA-NQLYELCEAVGPEPTRM---DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN  312 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~-~~l~~~~~~~~~~~~~~---~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      ....+...-.....+++..+|..++ .+|..++...+.-..+.   .+.|++..-... .+..+-...+..+..+.....
T Consensus      1033 l~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~ 1112 (1692)
T KOG1020|consen 1033 LVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA 1112 (1692)
T ss_pred             HHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc
Confidence            1111222222233344455555444 56666666544322212   244444433222 224444445555554444332


Q ss_pred             --HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh-HHHHhHHHHHHHhh-------cCC----ChHHHHHH
Q 007842          313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLL-------KDE----FPDVRLNI  378 (587)
Q Consensus       313 --~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l-------~d~----~~~vr~~a  378 (587)
                        .+.|...+-..+.+++-..+...-..+..+++.++..+... .....++..+.+.+       .++    +...-...
T Consensus      1113 ~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1113 NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred             cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence              33555566666666666666666667777777777543221 12222333333222       122    11222233


Q ss_pred             HHhhhhhhhhhc--------hh------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh
Q 007842          379 ISKLDQVNQVIG--------ID------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (587)
Q Consensus       379 ~~~l~~l~~~~~--------~~------~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  444 (587)
                      +-+++.++++..        +.      ...+.++..+.-+.++.+..+|..++..++.++-.-+.-+..+.+..++...
T Consensus      1193 iftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~i 1272 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEI 1272 (1692)
T ss_pred             HHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHH
Confidence            445555555331        11      3345556666666788889999999999999876544444556667777666


Q ss_pred             cCCCchHH--HHHHHHHHHHHHHH-------hChHH---------------------------HhhhhHHHHHhhccCCc
Q 007842          445 LQDKVYSI--RDAAANNLKRLAEE-------FGPEW---------------------------AMQHITPQVLEMINNPH  488 (587)
Q Consensus       445 l~d~~~~v--r~~a~~~l~~l~~~-------~~~~~---------------------------~~~~l~~~l~~~l~d~~  488 (587)
                      +.|.+..+  +..+...+..+...       -|.+|                           ....+++.+++..-+.+
T Consensus      1273 la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d 1352 (1692)
T KOG1020|consen 1273 LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRD 1352 (1692)
T ss_pred             HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccc
Confidence            66654333  34444444433211       01111                           23456777777788889


Q ss_pred             hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       489 ~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                      .++|..|++.+.-+...--.  .....+|.++.+..|+....|..|-..+..|-.++..
T Consensus      1353 ~~~r~~aikvl~liL~QGLV--hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~g 1409 (1692)
T KOG1020|consen 1353 LQVRLVAIKVLKLILNQGLV--HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEG 1409 (1692)
T ss_pred             hHHHHHHHHHHHHHHHccCC--CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999887652110  1256899999999999999999999999998776543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.7e-07  Score=92.57  Aligned_cols=465  Identities=14%  Similarity=0.103  Sum_probs=271.2

Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc---CCCCcchhhHHhhhHhhcCCCChHH
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAYPSAPDIL  160 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---~~~~~~r~~a~~~l~~~~~~~~~~~  160 (587)
                      +..++=-+.++.++.|+..|+..--+++.+...-.+      .+=.+.++..   ......|..|+..+..+.+..   .
T Consensus        62 ate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised------viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~---m  132 (865)
T KOG1078|consen   62 ATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED------VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT---M  132 (865)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh------hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc---h
Confidence            334444567788899999999888888887644322      2222233333   335667777777666665543   4


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhh
Q 007842          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (587)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (587)
                      ...+-.++.+..-|.++.++.++.-.--.+...  .+...............+.+..++..+...+-.+-+.-.  ...+
T Consensus       133 ~~~iery~kqaivd~~~avSsaalvss~hll~~--~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr--la~s  208 (865)
T KOG1078|consen  133 LQAIERYMKQAIVDKNPAVSSAALVSSYHLLPI--SFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--LAVS  208 (865)
T ss_pred             hHHHHHHHHhHeeccccccchHHHHHHhhhhcc--cHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--HHHH
Confidence            556666777778888888876654333333322  223333333444444455555666667666666543211  0111


Q ss_pred             chHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842          241 HILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  319 (587)
Q Consensus       241 ~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      .++..+.. .+.  ++--+...++........-  ......+.+.+..++.+....|-..++.++..+....+.+.  ..
T Consensus       209 klv~~~~~~~~~--~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~p  282 (865)
T KOG1078|consen  209 KLVQKFTRGSLK--SPLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--AP  282 (865)
T ss_pred             HHHHHHcccccc--chhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--ch
Confidence            22222211 111  1211211222211111111  11233578888888998889999999998888766554432  22


Q ss_pred             HhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       320 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  399 (587)
                      .+..+..+++.+...+|.++...|.+++...+....  .--+-+..++.|.+..+-.-|...+-+-+.    +...+.++
T Consensus       283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm  356 (865)
T KOG1078|consen  283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLM  356 (865)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHH
Confidence            456667778889999999999999999866543211  112335667788877776666655554333    22234556


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      ..+..++.|-+...+..+++++..++..++..  +..+++.+.+.|. +...+-+.+.+.++-.++.....  ..+..+.
T Consensus       357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~  432 (865)
T KOG1078|consen  357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLE  432 (865)
T ss_pred             HHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHH
Confidence            66666666555555555666666666555432  2334555555543 45566777888888777764332  2345566


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHH
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  558 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l  558 (587)
                      ++.+.+.|..  .+.-+.+.++-++...+.........-.+.+...=.+..||.++..++.++.  .+.......+.-.+
T Consensus       433 ~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vll  508 (865)
T KOG1078|consen  433 HLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLL  508 (865)
T ss_pred             HHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHH
Confidence            6666666543  4566777777776543322111222223333333347888999999998887  33444456777788


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHH
Q 007842          559 VELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       559 ~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .+++.|.|..||.+|.-++..+.
T Consensus       509 kRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  509 KRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhh
Confidence            88889999999999988888765

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=3e-08  Score=95.72  Aligned_cols=318  Identities=17%  Similarity=0.136  Sum_probs=200.0

Q ss_pred             hHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 007842          217 SVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE  295 (587)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~  295 (587)
                      .+|..+......++..-++ ....+.+..-+..+.+|.+++||..|++.+-.+.+.+  . .++.......+.+.|.+..
T Consensus       173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--k-L~~~~Y~~A~~~lsD~~e~  249 (823)
T KOG2259|consen  173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--K-LSKACYSRAVKHLSDDYED  249 (823)
T ss_pred             cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--c-ccHHHHHHHHHHhcchHHH
Confidence            4454444444444432222 1123345555778889999999999999988777632  2 2345677778889999999


Q ss_pred             HHHHHHHhHHHHHhhhC--------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh
Q 007842          296 VRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  367 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~--------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  367 (587)
                      ||.+|++.+.-++...+        +.......+..+...+.|-+|.||..++++++.+.... .+.+.+.+-..+..-+
T Consensus       250 VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKlms~l  328 (823)
T KOG2259|consen  250 VRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKLMSRL  328 (823)
T ss_pred             HHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHHhhhh
Confidence            99999999988888762        12344567778888899999999999999998886432 1222222222222211


Q ss_pred             cCC-ChHHHHHHHHhhhhhh------hhhchhh--------HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842          368 KDE-FPDVRLNIISKLDQVN------QVIGIDL--------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       368 ~d~-~~~vr~~a~~~l~~l~------~~~~~~~--------~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~  432 (587)
                      +-. ...=|-....+=+...      .....+.        +.....-.+..-++|+.+.||.+++..+..++..  ...
T Consensus       329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~  406 (823)
T KOG2259|consen  329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPG  406 (823)
T ss_pred             hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCC
Confidence            000 0000000111111000      0111111        0011123344556889999999999999998864  234


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC  512 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~  512 (587)
                      |...-+.++...++|+...||..|+.+|..+.....   ..+..++.+.+.+.|.+..+|++.-..|+..- ....+ ..
T Consensus       407 FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~-~i  481 (823)
T KOG2259|consen  407 FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLE-CI  481 (823)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHH-HH
Confidence            566778889999999999999999999999988643   34677899999999999999999988887642 22221 22


Q ss_pred             hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      ..++..+++.+. .-|.-|.....+++.+..+.+
T Consensus       482 ~m~v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  482 DMCVAHLLKNLG-KYPQDRDEILRCMGRIGQNHR  514 (823)
T ss_pred             HHHHHHHHHHhh-hCCCCcHHHHHHHHHHhccCh
Confidence            333333333332 133336777788888876654

>TIGR02270 conserved hypothetical protein

Probab=99.15  E-value=1.1e-08  Score=98.49  Aligned_cols=240  Identities=14%  Similarity=0.063  Sum_probs=142.4

Q ss_pred             HHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh
Q 007842          243 LPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (587)
Q Consensus       243 ~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  321 (587)
                      ++.+...+ .|++..++..++..+...-        ....+..+...+.|.++.||.+++++|+.+..        +...
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~  119 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAE  119 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHH
Confidence            44444444 4556666665555543211        11236667777777777777777777765432        3344


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      +.+..+++++++.||.+++.+++....         .-.+.+..+++|.++.||..++.+++.+..        ...+|.
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~  182 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST  182 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence            566666677777777777766655321         113455666677777777777777776654        234555


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  481 (587)
                      +...+.|.++.||..++..+..+    |.+    .-.+.+.....++...++..+...++..    |.    +..++.+.
T Consensus       183 L~~al~d~~~~VR~aA~~al~~l----G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~  246 (410)
T TIGR02270       183 LRLYLRDSDPEVRFAALEAGLLA----GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLR  246 (410)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHc----CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHH
Confidence            66667777777777777766544    221    1123334333445544544444443332    22    24566666


Q ss_pred             hhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842          482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                      .++.+++  +|..++.++|.+..        ...++.++..+.|+.  +|..+-+++..|..
T Consensus       247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            6666655  77788888877765        556777777776644  77777777777753

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=5.8e-06  Score=86.07  Aligned_cols=226  Identities=12%  Similarity=0.170  Sum_probs=163.6

Q ss_pred             ccCCcHHHHHHHHHHHHccccccch----hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHH
Q 007842          328 SSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA  401 (587)
Q Consensus       328 ~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~  401 (587)
                      -+..+..+|.-+...|..+...-..    +.....+...+..-+++.....+...+.++..+.+..+.+  .+....+|.
T Consensus       663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3444778999999998888766221    2234455666666677777889999999999999888744  233445555


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHH--Hh---hChhh---hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---H
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLA--SQ---LGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---E  470 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~--~~---~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~  470 (587)
                      +.-..++.+-.-|..+..+|..+.  ..   .|.+.   ..+.+++.+...+......++...+-++..+...++.   +
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~  822 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD  822 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            544557888888888888777776  22   24332   3345666666666666666666657777777665433   3


Q ss_pred             HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       471 ~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                      .+...++..+.-.+...+..++.+|+.++..+...++..-   +.+.++|.+..+++|....+|..+-..+..++..+|.
T Consensus       823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~  902 (1176)
T KOG1248|consen  823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence            3456667777777888999999999999999998887643   4677899999999999999999999999999999988


Q ss_pred             HHHHhh
Q 007842          548 SMVEKT  553 (587)
Q Consensus       548 ~~~~~~  553 (587)
                      +.....
T Consensus       903 ~eLe~~  908 (1176)
T KOG1248|consen  903 EELESF  908 (1176)
T ss_pred             HHHHhh
Confidence            765433

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.3e-07  Score=89.64  Aligned_cols=324  Identities=15%  Similarity=0.179  Sum_probs=204.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhh--hhhhhhh---------------hccCCcHHHHHHHHHH---
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRK--ELIPFLS---------------ENNDDDDEVLLAMAEE---   70 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~--~l~p~l~---------------~~~~~~~~v~~~~~~~---   70 (587)
                      +++..+.++++|......|+..+..+.. +|-+..|.  .++.++.               +++.++.++...+...   
T Consensus        38 l~e~r~E~k~~d~~~k~~a~~kl~yl~m-lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rk  116 (877)
T KOG1059|consen   38 LEEIRQELKSDDLNVKSNAVLKLTYLEM-LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRK  116 (877)
T ss_pred             HHHHHHHhhchhhhhhHHHHHHHHHHHH-HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHH
Confidence            5667778888888888888887776543 36554443  1122221               2333333333222222   


Q ss_pred             -------------hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC
Q 007842           71 -------------LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE  137 (587)
Q Consensus        71 -------------l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~  137 (587)
                                   |+-+..+ +.++.+..+.+-+..++.+..|.+|+.|+-.+..++...+.. ++ --.|-+.+-.+|+
T Consensus       117 dl~S~n~ye~giAL~GLS~f-vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr-~~FprL~EkLeDp  193 (877)
T KOG1059|consen  117 DLNSSNVYEVGLALSGLSCI-VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LR-PCFPRLVEKLEDP  193 (877)
T ss_pred             HhccCccchhhheecccccc-cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-Hh-hhHHHHHHhccCC
Confidence                         2222222 235567778888889999999999999999999999887653 23 3456666677888


Q ss_pred             CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch
Q 007842          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD  216 (587)
Q Consensus       138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~  216 (587)
                      +..+..+|++.++.++.+.+..+.. +-|.|..+ ..+.+-++-...+..++.+...  ++.....+++.+..++.....
T Consensus       194 Dp~V~SAAV~VICELArKnPknyL~-LAP~ffkllttSsNNWmLIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~A  270 (877)
T KOG1059|consen  194 DPSVVSAAVSVICELARKNPQNYLQ-LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVA  270 (877)
T ss_pred             CchHHHHHHHHHHHHHhhCCccccc-ccHHHHHHHhccCCCeehHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHH
Confidence            8999999999999999887665543 44555554 4455666666666777766554  345566677777666655432


Q ss_pred             -hHHHHHHHHHHH--HhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 007842          217 -SVRLLAVEGCAA--LGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN  292 (587)
Q Consensus       217 -~vr~~a~~~l~~--l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~  292 (587)
                       ++-..++.++.+  +....++ ......++.-+.-++.|+++..|..++-+++.+++.-+..  ......++++++.|.
T Consensus       271 mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~Dk  348 (877)
T KOG1059|consen  271 MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDK  348 (877)
T ss_pred             HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccC
Confidence             233333333322  2222222 2335567788888999999999999999999998753321  123566789999999


Q ss_pred             hHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccc
Q 007842          293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMA  347 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~  347 (587)
                      ++.+|..|+..+..+...   +. ...|+..+.....+.+. ..|...+..+..++
T Consensus       349 D~SIRlrALdLl~gmVsk---kN-l~eIVk~LM~~~~~ae~t~yrdell~~II~iC  400 (877)
T KOG1059|consen  349 DESIRLRALDLLYGMVSK---KN-LMEIVKTLMKHVEKAEGTNYRDELLTRIISIC  400 (877)
T ss_pred             CchhHHHHHHHHHHHhhh---hh-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence            999999999888776542   21 23444444444333333 55555555444444

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=2.1e-05  Score=80.51  Aligned_cols=376  Identities=13%  Similarity=0.089  Sum_probs=212.6

Q ss_pred             hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC---
Q 007842          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE---  234 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---  234 (587)
                      ++-+..+...+...+-.....+|.....++..+...- .+..++.+++....+++.++...-..|+-++..+.+...   
T Consensus        84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D-~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~  162 (1010)
T KOG1991|consen   84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKAD-YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK  162 (1010)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence            4455555555555444445778888777777776653 246678899999999999988888889888888887643   


Q ss_pred             h------h----hhhhchHHHHHHhccCCcHHH---HHHHHHHHHHHHH-HhCCCcccc----chHHHHHHhcC------
Q 007842          235 P------Q----DCVAHILPVIVNFSQDKSWRV---RYMVANQLYELCE-AVGPEPTRM----DLVPAYVRLLR------  290 (587)
Q Consensus       235 ~------~----~~~~~l~~~l~~~~~d~~~~v---R~~a~~~l~~~~~-~~~~~~~~~----~l~~~l~~~l~------  290 (587)
                      .      .    ...+.+......++.+++...   .+..++.+-..+. .++......    .-+..+...++      
T Consensus       163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E  242 (1010)
T KOG1991|consen  163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE  242 (1010)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh
Confidence            1      1    123334444455566665443   3333333333332 122221111    12222222221      


Q ss_pred             -----------CChHHHHHHHHHhHHHHHhhhCHH------------HHHH----hHhHHHHHhcc---C---CcHHHHH
Q 007842          291 -----------DNEAEVRIAAAGKVTKFCRILNPE------------LAIQ----HILPCVKELSS---D---SSQHVRS  337 (587)
Q Consensus       291 -----------d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~----~i~~~l~~~~~---d---~~~~vr~  337 (587)
                                 ++-|.+++-|+..+.++.+..|..            .+..    .++..+.+.+.   .   -.++|-.
T Consensus       243 ~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~  322 (1010)
T KOG1991|consen  243 VLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLY  322 (1010)
T ss_pred             cccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence                       123567888999999998877631            1111    22222222221   1   2345555


Q ss_pred             HHHHHHHcccccc------chh---HHHHhHHHHHHHh------h-cCCChHHHH-------------HHHHhhhhhhhh
Q 007842          338 ALASVIMGMAPLL------GKD---ATIEQLLPIFLSL------L-KDEFPDVRL-------------NIISKLDQVNQV  388 (587)
Q Consensus       338 ~a~~~l~~l~~~~------~~~---~~~~~l~~~l~~~------l-~d~~~~vr~-------------~a~~~l~~l~~~  388 (587)
                      -+...+.+....-      ++.   .+.+.++|.+.--      . .|+.+.+|.             ++...+..++..
T Consensus       323 ~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K  402 (1010)
T KOG1991|consen  323 YLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK  402 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence            5555544433211      110   1122333433210      0 122334444             455666666666


Q ss_pred             hchhhHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHhhCh-----hhhHHHHHHHHHHhcCCCchHHHHH
Q 007842          389 IGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDA  455 (587)
Q Consensus       389 ~~~~~~~~~~l~~l~~~~~--------~~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~  455 (587)
                      =|++.+ +.+++.+.+.++        ..+++-+..++..++.++..+.+     +.+...+.+.++..++++.--.|..
T Consensus       403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar  481 (1010)
T KOG1991|consen  403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR  481 (1010)
T ss_pred             cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence            555544 445555555443        24678888999999999876632     2233446666777789999999999


Q ss_pred             HHHHHHHHHH-HhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChH--H---HHhhHHHHHHhhcCCCCh
Q 007842          456 AANNLKRLAE-EFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE--I---TCSRLLPVVINASKDRVP  528 (587)
Q Consensus       456 a~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~--~---~~~~il~~l~~~l~d~~~  528 (587)
                      |+..++.++. .+........++......+. |.+..||..|+.++..+.......  .   +.+.++..++++.++-..
T Consensus       482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En  561 (1010)
T KOG1991|consen  482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN  561 (1010)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence            9999999984 44444344455555555544 888899999999999998654432  1   234455566666665444


Q ss_pred             hHHHHHH
Q 007842          529 NIKFNVA  535 (587)
Q Consensus       529 ~vR~~~~  535 (587)
                      ..=..++
T Consensus       562 d~Lt~vm  568 (1010)
T KOG1991|consen  562 DDLTNVM  568 (1010)
T ss_pred             hHHHHHH
Confidence            4333333

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.1e-06  Score=86.58  Aligned_cols=331  Identities=15%  Similarity=0.147  Sum_probs=201.6

Q ss_pred             hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHH-hhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      ++....++|.+.++++++++-||+.|.-++..+.+..  +...+..-.++.. +..+.++..++.|.-.|..    ..++
T Consensus       129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~----~D~E  202 (948)
T KOG1058|consen  129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFT----TDPE  202 (948)
T ss_pred             HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChHHHHHHHHHhccCchhHHHHHHHHHh----cCHH
Confidence            4466778899999999999999999999999888774  2222222233333 3456677777777655543    2333


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  316 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  316 (587)
                      ...+++...+.+. .+-+.......++.+...+..-+  ......+..+..++...++.|+..|+.++..+...  +.. 
T Consensus       203 rAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~a-  276 (948)
T KOG1058|consen  203 RALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTA-  276 (948)
T ss_pred             HHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHH-
Confidence            2333333333222 22234556666677777665221  12345788888888888999998888877666542  221 


Q ss_pred             HHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH
Q 007842          317 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       317 ~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  395 (587)
                      .......+..++. .++-.++-....-+..+..  ..+...+.++--++..+...+-+||..++...-.+...-..+++.
T Consensus       277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv  354 (948)
T KOG1058|consen  277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV  354 (948)
T ss_pred             HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence            2222333344332 3344555555555555541  233344555556778888999999999988776666544333322


Q ss_pred             hhHHHHHHHH---hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842          396 QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (587)
Q Consensus       396 ~~~l~~l~~~---~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      ..+-..+.+.   -.+++...|+..++.++.++-.++  .+...++|.++..+.|.+..--...+..+.+.++.+..  .
T Consensus       355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--L  430 (948)
T KOG1058|consen  355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--L  430 (948)
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--H
Confidence            2222222111   134567789999999999876554  34677899999999999988777777777777776553  2


Q ss_pred             hhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhccc
Q 007842          473 MQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVM  506 (587)
Q Consensus       473 ~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~  506 (587)
                      ...++..+.+.+. -....+-..+++.+|..+...
T Consensus       431 r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~  465 (948)
T KOG1058|consen  431 RASIIEKLLETFPQIRSSKICRGALWILGEYCEGL  465 (948)
T ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence            3344544444322 223445566777777766543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.06  E-value=1.3e-08  Score=92.02  Aligned_cols=187  Identities=21%  Similarity=0.254  Sum_probs=128.8

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HH---HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  353 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  353 (587)
                      +...|...-.+.+|+.|..++..+..+.....+.    .+   ...+++.+...+.|....|-..++.++..++..++..
T Consensus         8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~   87 (228)
T PF12348_consen    8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH   87 (228)
T ss_dssp             S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence            4444434446677888888888888877654111    11   1233456667777888888899999999998887753


Q ss_pred             --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc-hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC-
Q 007842          354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-  429 (587)
Q Consensus       354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-  429 (587)
                        .+.+.++|.+++.+.+....++..+..+|..++...+ ..   ..+.+.+....+++++.+|..++..+..+....+ 
T Consensus        88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence              3577899999999999999999999999999998876 22   2236777788899999999999999999988777 


Q ss_pred             -hhh-----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842          430 -VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       430 -~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                       ...     ..+.+.+.+...+.|.+++||.+|-.++..+.+.+|..
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence             121     23568899999999999999999999999999887764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.2e-06  Score=84.95  Aligned_cols=456  Identities=13%  Similarity=0.083  Sum_probs=246.4

Q ss_pred             CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC
Q 007842           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE  137 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~  137 (587)
                      ..+...|+...-.++.+... .  +-.-.....+.+-.+..++..|-.|+++|..+...---..    +-.++.+..-+.
T Consensus        75 skd~~LRr~vYl~Ikels~i-s--edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~----iery~kqaivd~  147 (865)
T KOG1078|consen   75 SKDVSLRRMVYLAIKELSKI-S--EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQA----IERYMKQAIVDK  147 (865)
T ss_pred             hcCHHHHHHHHHHHhhcccc-c--hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHH----HHHHHHhHeecc
Confidence            34556677766666666432 1  1111223334444556677788888888877754322122    222333333344


Q ss_pred             CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchh
Q 007842          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS  217 (587)
Q Consensus       138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~  217 (587)
                      ...+..++...-.++.+ .+.+..+...........+.+..++..+...+..+-+.-  ......++..+... .-.++-
T Consensus       148 ~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~~~~-~~~~~~  223 (865)
T KOG1078|consen  148 NPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRG-SLKSPL  223 (865)
T ss_pred             ccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHccc-cccchh
Confidence            44444333322112222 234444555555566666666677777666666664431  11222222222220 001111


Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHH
Q 007842          218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR  297 (587)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  297 (587)
                      -+...+.....+....  ......+.+++..++.++...|-..+++++..+....+.+..+  -+..+..+++.+...+|
T Consensus       224 A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lR  299 (865)
T KOG1078|consen  224 AVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALR  299 (865)
T ss_pred             HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHH
Confidence            1111111111111111  1234567888889999999999999999988776554444333  56667778899999999


Q ss_pred             HHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHH
Q 007842          298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  377 (587)
Q Consensus       298 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (587)
                      .+|++.|..++-..+....  .--.-+..++.|.+-.+-.-++..+-+.+.....+.... -++.+..-+.|+..-|-..
T Consensus       300 faAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~-qI~~fv~disDeFKivvvd  376 (865)
T KOG1078|consen  300 FAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMK-QISSFVSDISDEFKIVVVD  376 (865)
T ss_pred             HHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccccceEEeHH
Confidence            9999999999987665421  112345677788887777777766655543332222222 2233344445555545444


Q ss_pred             HHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842          378 IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA  456 (587)
Q Consensus       378 a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      ++.+   ++..+..+.  ..+++.+..++. +.....+.+.++++..+.......  ++..+..+-..+.|...  +.-+
T Consensus       377 ai~s---Lc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~  447 (865)
T KOG1078|consen  377 AIRS---LCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIA  447 (865)
T ss_pred             HHHH---HHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHH
Confidence            4444   444444332  355666666554 445677777777777766543211  22223333334444332  1222


Q ss_pred             HHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHH
Q 007842          457 ANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~  536 (587)
                      ...|+.+.+.......-...+-.+....-=.+..+|.+|+.++.+++  .+.+...+.+...+.+++.|.+.+||..|-.
T Consensus       448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf  525 (865)
T KOG1078|consen  448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATF  525 (865)
T ss_pred             HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHH
Confidence            22333332211100000112222222222236789999999999998  3444456778888899999999999999999


Q ss_pred             HHHHhh
Q 007842          537 VLQSLI  542 (587)
Q Consensus       537 ~l~~l~  542 (587)
                      ++..+-
T Consensus       526 ~l~~l~  531 (865)
T KOG1078|consen  526 YLKNLE  531 (865)
T ss_pred             HHHHhh
Confidence            888776

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.05  E-value=7.8e-06  Score=83.08  Aligned_cols=496  Identities=15%  Similarity=0.118  Sum_probs=243.3

Q ss_pred             hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhc
Q 007842           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT   96 (587)
Q Consensus        18 l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~   96 (587)
                      +.|.+..+|..|++.+-.. +..|.+  ...+.|-+.. ....+.|+.+.+---+..+++.-  ++..-..++.+.+=++
T Consensus        28 l~s~n~~~kidAmK~iIa~-M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQ-MSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence            5666777777777766432 234444  3345554433 33455566666655555554421  2322333455666667


Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCC
Q 007842           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM  176 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~  176 (587)
                      |+|+.+|-.|++.++.+-.                                          ++....+++.+.++++|++
T Consensus       103 d~N~~iR~~AlR~ls~l~~------------------------------------------~el~~~~~~~ik~~l~d~~  140 (757)
T COG5096         103 DPNEEIRGFALRTLSLLRV------------------------------------------KELLGNIIDPIKKLLTDPH  140 (757)
T ss_pred             CCCHHHHHHHHHHHHhcCh------------------------------------------HHHHHHHHHHHHHHccCCc
Confidence            7777777777776666521                                          2244566778888999999


Q ss_pred             hHHHHHHHHhHHHHHHhhccchhhhH-HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccC--C
Q 007842          177 PMVRRSAASNLGKFAATVEPAHLKTD-IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD--K  253 (587)
Q Consensus       177 ~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d--~  253 (587)
                      +.||+.|+-++..+...- ++.+.+. ...++..+..|.+|.|...|..++..+-+...    ..+..+....+.+=  .
T Consensus       141 ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a----~~~~~~~~~~i~~l~~~  215 (757)
T COG5096         141 AYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELA----HGYSLEVILRIPQLDLL  215 (757)
T ss_pred             HHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhh----hhHHHHHHHHhhhccch
Confidence            999999999999988653 2334444 66777888899999999888888877765411    12222222222110  1


Q ss_pred             cHHH--HHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccC
Q 007842          254 SWRV--RYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (587)
Q Consensus       254 ~~~v--R~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d  330 (587)
                      +|.+  ...-...+..+....+.... ...+.....-..+..++.+-..++..+..+........+.....|.+..++..
T Consensus       216 ~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~  295 (757)
T COG5096         216 SLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAK  295 (757)
T ss_pred             hhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcC
Confidence            2221  22222333333333332211 11222222222345667777778887777776665554545556666666655


Q ss_pred             CcHHHHHHHHHHHH-ccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC-
Q 007842          331 SSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-  408 (587)
Q Consensus       331 ~~~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-  408 (587)
                      + +......+.... .+.+...+  ..+....++.....++ ..+...-...+..+.   ..+.. ..+++.+...+.+ 
T Consensus       296 ~-~~~~~~vl~~~~~~~l~~~~k--~~~~~~~~f~~~~~~~-i~~~lek~~~~t~l~---~~~n~-~~~L~e~~~y~~~~  367 (757)
T COG5096         296 P-ESLIQYVLRRNIQIDLEVCSK--LLDKVKKLFLIEYNDD-IYIKLEKLDQLTRLA---DDQNL-SQILLELIYYIAEN  367 (757)
T ss_pred             C-HHHHHHHHHHhhHHHHHhhHH--HHHHHhhhhhhhccch-HHHHHHHHHHHhhcC---Cchhh-HHHHHHHHHHHhhc
Confidence            4 222222222211 11111111  1111111111111111 111111111111111   01111 2245555555555 


Q ss_pred             -CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC---CCchHHHHHH-----HHHHH---HHHHHhChHHHhhhh
Q 007842          409 -RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ---DKVYSIRDAA-----ANNLK---RLAEEFGPEWAMQHI  476 (587)
Q Consensus       409 -~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a-----~~~l~---~l~~~~~~~~~~~~l  476 (587)
                       .+..+-..++++|+.++...  +.....++..++.++.   -..+-+-..+     +..+.   .....+..+ ..+.+
T Consensus       368 ~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~-~~~~~  444 (757)
T COG5096         368 HIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNE-YPKIL  444 (757)
T ss_pred             cccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCc-chhhh
Confidence             66666666777777776543  1223334444555544   1111111111     11110   111112111 01122


Q ss_pred             HHHH---Hhhcc--CCchhHHHHH-----HHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          477 TPQV---LEMIN--NPHYLYRMTI-----LRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       477 ~~~l---~~~l~--d~~~~~R~~a-----~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      .+.+   .+.+.  +..+..+.+.     ++.+|.++..+..-  .+..+-......-+....++......-..+.-...
T Consensus       445 ~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~  522 (757)
T COG5096         445 LRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIANSI  522 (757)
T ss_pred             HHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence            2222   22233  3346666666     88888887754432  23455566666778888999888877777654433


Q ss_pred             hHHHH---hhHHHHHHHh-cCCCCccHHHHHHHHHHH
Q 007842          547 QSMVE---KTIRPCLVEL-TEDPDVDVRFFATQAIQS  579 (587)
Q Consensus       547 ~~~~~---~~i~~~l~~l-~~d~d~~Vr~~a~~al~~  579 (587)
                      .....   +...+.+... ..-.++|+|..|. .+.+
T Consensus       523 ~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~-my~~  558 (757)
T COG5096         523 RKAKQCNSELDQDVLRRCFDYVLVPDLRDRAR-MYSR  558 (757)
T ss_pred             HhhhhccchhccHHHHHHHhccCChhHHHHHH-HHHH
Confidence            22221   2222333332 2334568888877 4443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.05  E-value=5.3e-09  Score=102.34  Aligned_cols=255  Identities=13%  Similarity=0.198  Sum_probs=207.3

Q ss_pred             cCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc
Q 007842          289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (587)
Q Consensus       289 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (587)
                      +.=.+.+-|..-...|......++.+.....++|.+...+.-.+  --..+...+-.++..+..+.+...++|.+.++++
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~  340 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK  340 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence            44455666777777787777777888888888998887654333  1111122223344445555677889999999999


Q ss_pred             CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (587)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  448 (587)
                      ..+..+|...++.+..++..+..+.+.+.++|.+...+.|.+..+|...+..+..++..++.......++..+-..-.|.
T Consensus       341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~  420 (690)
T KOG1243|consen  341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE  420 (690)
T ss_pred             CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence            99999999999999999999999998899999999999999999999999999999999988877778888888888899


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCCh
Q 007842          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP  528 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  528 (587)
                      ...+|.....+++++............+.......+.|+-..-|.+++..+....+.+........++|.+..+.-|++.
T Consensus       421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~  500 (690)
T KOG1243|consen  421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK  500 (690)
T ss_pred             cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence            99999999999999987665443223334444556889988999999999999999999988999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhh
Q 007842          529 NIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~  545 (587)
                      .||..+.+++.......
T Consensus       501 ~vr~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  501 TVRDTAEKAIRQFLEKL  517 (690)
T ss_pred             chhhHHHHHHHHHHhhh
Confidence            99999999998876654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.4e-05  Score=78.42  Aligned_cols=281  Identities=14%  Similarity=0.182  Sum_probs=172.6

Q ss_pred             cHHHHHHHH-HHhccccccCCCcchHhhhHHHHhhhhc--chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC
Q 007842           60 DDEVLLAMA-EELGVFIPYVGGVEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG  136 (587)
Q Consensus        60 ~~~v~~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~  136 (587)
                      .++....+| .+++++    |+.+....+.+-+.+++.  +..+.||+.|+-++-.+.+..++-.-...+..-+..+.+|
T Consensus       123 rn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D  198 (938)
T KOG1077|consen  123 RNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDD  198 (938)
T ss_pred             CCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCc
Confidence            344444443 344555    666666666666666654  4567899999999999988855433344677777788888


Q ss_pred             CCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhc-------CC---------CChHHHHHHHHhHHHHHHhhccchhh
Q 007842          137 EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-------QD---------DMPMVRRSAASNLGKFAATVEPAHLK  200 (587)
Q Consensus       137 ~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-------~d---------~~~~vr~~~~~~l~~l~~~~~~~~~~  200 (587)
                      .+..+-.++..++..+.++.+++++.-+.+.+..+.       .+         +.|+....++..|..+ ....++...
T Consensus       199 ~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r  277 (938)
T KOG1077|consen  199 QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTR  277 (938)
T ss_pred             cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHH
Confidence            888888888899988998888776554444333321       11         4677777777766655 221122333


Q ss_pred             hHHHHHHHHhhhCCc-----hhH-----HHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842          201 TDIMSIFEDLTQDDQ-----DSV-----RLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~-----~~v-----r~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~  269 (587)
                      ..+...+...++-.+     ..|     ..+.+.-.-.++-++.+ ..........+-+++++.+..+|..+.+.+..++
T Consensus       278 ~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~  357 (938)
T KOG1077|consen  278 ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLA  357 (938)
T ss_pred             HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence            444444444432111     112     22222222333434443 3345667777888889999999999999988888


Q ss_pred             HHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842          270 EAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (587)
Q Consensus       270 ~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                      ..-........-...++..++ +.+..+|+.++..|..++..-..+.+..+    +.+.+...++.+|+..+--..-+++
T Consensus       358 ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~e----lLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  358 SSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAE----LLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             hccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHH----HHHHHhhcchHHHHHHHHHHHHHHH
Confidence            651111111223566677777 88999999999999999876544444344    4444444666677665544444444


Q ss_pred             c
Q 007842          349 L  349 (587)
Q Consensus       349 ~  349 (587)
                      .
T Consensus       434 K  434 (938)
T KOG1077|consen  434 K  434 (938)
T ss_pred             H
Confidence            3

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.97  E-value=7.2e-06  Score=80.93  Aligned_cols=305  Identities=16%  Similarity=0.166  Sum_probs=189.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhCCCc--------cccchHHHHHHhcC-----CC--hHHHHHHHHHhHHHHHhhhCHHHH--
Q 007842          254 SWRVRYMVANQLYELCEAVGPEP--------TRMDLVPAYVRLLR-----DN--EAEVRIAAAGKVTKFCRILNPELA--  316 (587)
Q Consensus       254 ~~~vR~~a~~~l~~~~~~~~~~~--------~~~~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~--  316 (587)
                      +...-...++++..+........        ....++|.+.+..-     +.  ++.+-..+...+..+...++.+..  
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566667777777766543322        01126666665542     22  256666666777777777776543  


Q ss_pred             -HHhHhHHHHH-----hcc-CCc------HHHHHHHHHHHHccccccchhHHHHhHHHHHHHh-hcCCChHHHHHHHHhh
Q 007842          317 -IQHILPCVKE-----LSS-DSS------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKL  382 (587)
Q Consensus       317 -~~~i~~~l~~-----~~~-d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l  382 (587)
                       ...+...+..     -+. +.+      .+.-.-....+..+-....-. ....++..+..+ ....++..|..+++.+
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l  214 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL  214 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence             2333333320     000 111      111112223333333222111 122344444444 3444589999999999


Q ss_pred             hhhhhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhh--ChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          383 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       383 ~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +.+......+...+.++..+.... .......|..+++.+..+.+.+  ........+...+..++.|  +.+...+++.
T Consensus       215 a~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~  292 (415)
T PF12460_consen  215 ASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKA  292 (415)
T ss_pred             HHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHH
Confidence            999988765544455555555444 4556667777788887777764  2222344567778888887  7788889999


Q ss_pred             HHHHHHHhCh----H-----------HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH---HhhHHHHHHh
Q 007842          460 LKRLAEEFGP----E-----------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVIN  521 (587)
Q Consensus       460 l~~l~~~~~~----~-----------~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~---~~~il~~l~~  521 (587)
                      ++.+......    +           .+-..++|.+.+..++.+...|...+.++..+.+.++.+.+   .+.++|.+++
T Consensus       293 f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlq  372 (415)
T PF12460_consen  293 FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQ  372 (415)
T ss_pred             HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence            9888764211    1           13356788888888887777999999999999999887654   5779999999


Q ss_pred             hcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHh
Q 007842          522 ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVEL  561 (587)
Q Consensus       522 ~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l  561 (587)
                      .++-+++.+|..++.++..+....+.-  .+.+.++|.|.++
T Consensus       373 sL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l  414 (415)
T PF12460_consen  373 SLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL  414 (415)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998765221  3445666666543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.96  E-value=8.5e-08  Score=98.72  Aligned_cols=357  Identities=17%  Similarity=0.184  Sum_probs=228.2

Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc-ccchH
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLV  282 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~~l~  282 (587)
                      ++.....+.......|....+++..+....    ........+..+..-..+..-..++..+..++..+|.... ...++
T Consensus        65 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~----~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~  140 (815)
T KOG1820|consen   65 LSFGLKCLDSKRVNIRDTKTQSLLRIGKLE----DIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI  140 (815)
T ss_pred             ccchhhhcccccccccCcchhHHHHHHHhh----hhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence            334444444444555555555555552211    1234455555566666677667777777777777765332 23344


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHH
Q 007842          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLL  360 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~  360 (587)
                      +.+-.+.   +..||..+...+..+.+..|....     +.+.          +.......+.+....|+..  +...--
T Consensus       141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~-----~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~  202 (815)
T KOG1820|consen  141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASK-----PLLF----------KASAPGLMGKLGSYQGKSMMSFFNEKR  202 (815)
T ss_pred             ccCcccc---ccccchhhcccchhhhhhcCCCcC-----cccc----------hhhhHHHHHHHHhhccccccccccccc
Confidence            4444444   678999999999999887776421     1111          3333333333333333211  000111


Q ss_pred             HHHHHhhcC------------CChHHHHHHHHhhh--hhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842          361 PIFLSLLKD------------EFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       361 ~~l~~~l~d------------~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~  426 (587)
                      |.......+            ....++...-..-.  .-...+........+-+.+..-+.+++|..|..+++.+.....
T Consensus       203 ~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~  282 (815)
T KOG1820|consen  203 PLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILE  282 (815)
T ss_pred             cccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHh
Confidence            111111111            11111111000000  0001112233445666777778899999999999888777665


Q ss_pred             hhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHH
Q 007842          427 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISL  501 (587)
Q Consensus       427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~  501 (587)
                      .-+   ...+...+...+-..+.|.+..|-..|+..+..++..++..+  +...++|.+++.+.+....+|.++..++..
T Consensus       283 e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~  362 (815)
T KOG1820|consen  283 EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDA  362 (815)
T ss_pred             ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHH
Confidence            443   122334445555566789999999999999999999887764  567788999999999999999999999999


Q ss_pred             hhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842          502 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQAI  577 (587)
Q Consensus       502 l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al  577 (587)
                      ++...+    ...+.+.+..+++++++.+|..+...+......+++    ..-...+.|.+....+|.+.+||.+|..++
T Consensus       363 ~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~  438 (815)
T KOG1820|consen  363 ILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV  438 (815)
T ss_pred             HHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence            888544    367788999999999999999999999998887773    234567889999999999999999999999


Q ss_pred             HHHHHhhcc
Q 007842          578 QSIDHVMMS  586 (587)
Q Consensus       578 ~~l~~~~~~  586 (587)
                      +.+.+..|.
T Consensus       439 ~~v~k~~Ge  447 (815)
T KOG1820|consen  439 AAVMKVHGE  447 (815)
T ss_pred             HHHHHHhhH
Confidence            999998874

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=7.4e-05  Score=74.98  Aligned_cols=508  Identities=16%  Similarity=0.140  Sum_probs=269.5

Q ss_pred             cHHHHHHHhhcHHHHHH-hhChHhhh-------------hhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842           22 DIQLRLNSIRRLSTIAR-ALGEERTR-------------KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (587)
Q Consensus        22 ~~~~R~~a~~~l~~~~~-~~~~~~~~-------------~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l   87 (587)
                      |...|.+|+-+++...+ .++++.-.             ..+++.+   +.....++..+.+++.-+++. .=++-++.+
T Consensus        52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lM---l~s~~~iQ~qlseal~~Ig~~-DFP~kWptL  127 (960)
T KOG1992|consen   52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLM---LSSPFNIQKQLSEALSLIGKR-DFPDKWPTL  127 (960)
T ss_pred             ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHhcc-ccchhhHHH
Confidence            79999999999997765 44433221             1222222   234457778888887766542 114678899


Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh----hHHhhHH--------HH---H---HHHhc--CCC-------Cc
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYI--------PL---V---KRLAA--GEW-------FT  140 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~--------~~---l---~~l~~--~~~-------~~  140 (587)
                      +|.+..-++..|..+-.+.+..-..+.+...++    .++.++.        |+   +   .+++.  +.+       +.
T Consensus       128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~  207 (960)
T KOG1992|consen  128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFG  207 (960)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence            999988888888888777777777777766432    2222211        21   1   12221  111       22


Q ss_pred             chhhHHhhhHh-hcCCCCh---HHHHHHHHHHHHhcCCCCh-------------HHHHHHHHhHHHHHHhhccc--hhhh
Q 007842          141 ARVSACGLFHI-AYPSAPD---ILKTELRSIYTQLCQDDMP-------------MVRRSAASNLGKFAATVEPA--HLKT  201 (587)
Q Consensus       141 ~r~~a~~~l~~-~~~~~~~---~~~~~l~~~l~~l~~d~~~-------------~vr~~~~~~l~~l~~~~~~~--~~~~  201 (587)
                      +....++++.. .+..+++   +..+..++.+.+++.-++|             .+|..+|+.+.-.+...+++  .+.+
T Consensus       208 vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~  287 (960)
T KOG1992|consen  208 VLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP  287 (960)
T ss_pred             HHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence            22223333322 2334443   3556777777777663322             45667777777777665331  2333


Q ss_pred             HHHHHHHHhhh----CC-chhHHHHHHHHHHHHhhhcChhh--hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC
Q 007842          202 DIMSIFEDLTQ----DD-QDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP  274 (587)
Q Consensus       202 ~l~~~l~~l~~----d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~  274 (587)
                      .++.....++.    |. ++.....|.+.|..+++.-....  ..+.++..+.+..-=++...|..-            .
T Consensus       288 ~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------e  355 (960)
T KOG1992|consen  288 DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------E  355 (960)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------H
Confidence            44433334443    33 33445556666666654322110  011111111111111122222211            1


Q ss_pred             CccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccC--CcHHHHHHHHHHHHcccc
Q 007842          275 EPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAP  348 (587)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~l~~  348 (587)
                      +...++-+.++.+-++-.|.+ =|.+|+..+..+++.+...   .+...+-..+.+...+  .+|.-+..++..+..++.
T Consensus       356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai  435 (960)
T KOG1992|consen  356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI  435 (960)
T ss_pred             HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence            233455777777777766544 4677888888888877432   1222222333334444  468888888777776654


Q ss_pred             ccc---------------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHH
Q 007842          349 LLG---------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV  413 (587)
Q Consensus       349 ~~~---------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~v  413 (587)
                      ..+               .+.+...++|.+.+--..+.+-++..+++-+..+-..++++.. -.++|.+..+++.+..-+
T Consensus       436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vv  514 (960)
T KOG1992|consen  436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVV  514 (960)
T ss_pred             hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHH
Confidence            321               1234455566555433345677888888888888888887766 457888888998888888


Q ss_pred             HHHHHHHHHHHHHhh--------ChhhhHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHH-
Q 007842          414 RLAIIEYIPLLASQL--------GVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQ-  479 (587)
Q Consensus       414 R~~~~~~l~~l~~~~--------~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~-  479 (587)
                      -.-++.+++.+...-        +++...+.+.+.+.+++   +-+...--+...+++-.+........  +.+.+++. 
T Consensus       515 hsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~L  594 (960)
T KOG1992|consen  515 HSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQL  594 (960)
T ss_pred             HHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHH
Confidence            877788887765432        33333444444444444   22211112222233333322211110  12233333 


Q ss_pred             ---HHhhccCC-chhHHHHHHHHHHHhhcccCh------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          480 ---VLEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       480 ---l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                         +.+..++| +++.-.-..++++-+....+.      ..+...++|.+...+.....+.---+.+.++.+.+..+
T Consensus       595 teiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~  671 (960)
T KOG1992|consen  595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS  671 (960)
T ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               33444555 344444445555555442222      11446677777777766666666666677776665543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.94  E-value=3.1e-05  Score=78.86  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhc
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (587)
                      ..+++=+.......+.++|+-+-..+..+++.-+  ..--...+.+.+=++|+++.+|..|++.++.+-    .......
T Consensus        54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~~  127 (757)
T COG5096          54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLGN  127 (757)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHHH
Confidence            3344433333336678888887777777776643  222234556666677888888888888887643    3446777


Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007842          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                      +++.++++++|+++.||+.|+-++.++-.. +++..+.. ....+..++.|.++.|-..|+.++..+-..
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            888888889999999999998888877653 33444444 677777788888888888888888776543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.89  E-value=0.00013  Score=74.18  Aligned_cols=564  Identities=13%  Similarity=0.070  Sum_probs=294.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCC---------
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---------   80 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~---------   80 (587)
                      .+..++....|.|..+|..|...+..+...   +.....+.....+. +.+=..|+.+.-.|.+++.....         
T Consensus         5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~---~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~   80 (1005)
T KOG2274|consen    5 AIIELLSGSLSADQNVRSQAETQLKQLELT---EGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAFRYP   80 (1005)
T ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhccccc---hHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence            467889999999999999999888765432   22222222222221 11224444444333333321111         


Q ss_pred             ----cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842           81 ----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (587)
Q Consensus        81 ----~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~  156 (587)
                          .+....+-..+.+++-+++..+|.++..++..++...-|+. +.+++|++..+..+.+...-..|+..+..++..+
T Consensus        81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev  159 (1005)
T KOG2274|consen   81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEV  159 (1005)
T ss_pred             CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence                11222344455566668999999999999999998877765 7788999888887655555556666666665544


Q ss_pred             ChHHHHHH-------HHHHHHhcCCCChHHHHHHH--HhHHHHHHhhcc---------chhhhHHHHHHHHhh------h
Q 007842          157 PDILKTEL-------RSIYTQLCQDDMPMVRRSAA--SNLGKFAATVEP---------AHLKTDIMSIFEDLT------Q  212 (587)
Q Consensus       157 ~~~~~~~l-------~~~l~~l~~d~~~~vr~~~~--~~l~~l~~~~~~---------~~~~~~l~~~l~~l~------~  212 (587)
                      ..+....+       +-.+..+....+...|..++  ..+......+..         ..+...+++.+..+.      +
T Consensus       160 ~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~  239 (1005)
T KOG2274|consen  160 DVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN  239 (1005)
T ss_pred             HHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            32111111       11122333444444444443  222222221111         112233333333332      1


Q ss_pred             CC-chhHHHHHHHHHHHHhhhcChh--hhhhchHHH----HHHhc------------------cCCcHH---HHHHHHH-
Q 007842          213 DD-QDSVRLLAVEGCAALGKLLEPQ--DCVAHILPV----IVNFS------------------QDKSWR---VRYMVAN-  263 (587)
Q Consensus       213 d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~----l~~~~------------------~d~~~~---vR~~a~~-  263 (587)
                      +. +...|...++.+..+.+.++..  ......++.    +.+..                  .|.++.   +-....+ 
T Consensus       240 ~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i  319 (1005)
T KOG2274|consen  240 DGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQI  319 (1005)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhH
Confidence            22 3355666777777777766641  111111111    11110                  111111   1111122 


Q ss_pred             --HHHHHHHHhC--CCc--cccchHHHHHHh------------------cCCCh--HHHHHHHHHhHHHHHhhhCHHHHH
Q 007842          264 --QLYELCEAVG--PEP--TRMDLVPAYVRL------------------LRDNE--AEVRIAAAGKVTKFCRILNPELAI  317 (587)
Q Consensus       264 --~l~~~~~~~~--~~~--~~~~l~~~l~~~------------------l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                        .+..++....  +..  ...++++.+...                  ..|++  ..+|..+...+..+...++.... 
T Consensus       320 ~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i-  398 (1005)
T KOG2274|consen  320 VEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGI-  398 (1005)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhh-
Confidence              1222221110  000  011122222211                  11222  34666666666666666655422 


Q ss_pred             HhHhHH----H-----HHhccCC-cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCChHHHHHHHHhhhhhh
Q 007842          318 QHILPC----V-----KELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       318 ~~i~~~----l-----~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~  386 (587)
                      ..+...    +     ...+..+ .|....+...+...+...-..+.....+...+...+. .+.|..-..+..+++.+.
T Consensus       399 ~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs  478 (1005)
T KOG2274|consen  399 NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFS  478 (1005)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHH
Confidence            111111    1     1123333 3566666666655554221122223333333444333 445666667888888776


Q ss_pred             hhhc-hhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842          387 QVIG-IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (587)
Q Consensus       387 ~~~~-~~~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      .... ...+...++..... +..|..+-+|..++..+...++.---..+.+.++..+.++..+.+.+|-....++|+..+
T Consensus       479 ~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv  558 (1005)
T KOG2274|consen  479 SSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV  558 (1005)
T ss_pred             hhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence            6521 11222233333233 345667778888877776655321122345678888888889999999999999999888


Q ss_pred             HHhChHH---HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhc---ccChHHHHhhHHHHHHhhcCCCC----hhHHH
Q 007842          465 EEFGPEW---AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRV----PNIKF  532 (587)
Q Consensus       465 ~~~~~~~---~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~----~~vR~  532 (587)
                      +. .+++   ....+.|....++  ...++.+-..+-.++..+.+   ..|+  +....+|.+++.++-+.    +..-.
T Consensus       559 ~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~  635 (1005)
T KOG2274|consen  559 KL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCA  635 (1005)
T ss_pred             cc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhH
Confidence            63 3333   2355666665542  22244666666666666654   3343  45788999999887765    56667


Q ss_pred             HHHHHHHHhhhhhchH---HHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007842          533 NVAKVLQSLIPIVDQS---MVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       533 ~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .++..|..+..+.+++   .+....+|.+.+. +...|...-.++..+|..+-.
T Consensus       636 ~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  636 IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            7777777777665543   4557788888884 566677777888888876543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=5.4e-05  Score=75.06  Aligned_cols=314  Identities=12%  Similarity=0.124  Sum_probs=196.5

Q ss_pred             HhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHH
Q 007842          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYV  286 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~  286 (587)
                      +-++.++..+|-.....+..+    ...+..+.+.|.+..++++.+..||+.|+-++..+-..+. ...+  ++++..++
T Consensus       106 kDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDapeLi~~fL  180 (948)
T KOG1058|consen  106 KDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAPELIESFL  180 (948)
T ss_pred             hhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChHHHHHHHH
Confidence            335667778887776666543    3344677899999999999999999999999988877532 1111  12333332


Q ss_pred             HhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc---cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHH
Q 007842          287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  363 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  363 (587)
                        ..+.++..++.|.-.|...    +++..    +.++...+   .+-++..+....+.+...+..-+.  .....+..+
T Consensus       181 --~~e~DpsCkRNAFi~L~~~----D~ErA----l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i  248 (948)
T KOG1058|consen  181 --LTEQDPSCKRNAFLMLFTT----DPERA----LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCI  248 (948)
T ss_pred             --HhccCchhHHHHHHHHHhc----CHHHH----HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHH
Confidence              3566677777766555432    33322    33333322   223456666666666666542221  234567778


Q ss_pred             HHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHH
Q 007842          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  442 (587)
                      ..+|...++.|+..++.++..+...-  .. ....-..+.+++ +.++-+++.....-+..+..  +.+...+.++--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~p--~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSNDP--TA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCCH--HH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence            88888889999988888877765431  11 122222333332 33445555555555555542  22223344555577


Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh---ccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHH
Q 007842          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l  519 (587)
                      ..+..++.+||..++...-.++..-..+....-+-..+.+.   -.+.+.+.|+.-++.+..++-.++.  +...+.|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            88999999999999888777765433332221111222222   1345678999999999999887765  567899999


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      ++.+.|.++..-..++..+...++.++
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p  428 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFP  428 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence            999999998877777777777777665

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=3.3e-05  Score=77.36  Aligned_cols=447  Identities=15%  Similarity=0.144  Sum_probs=237.0

Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcC-----------CCChHHHHHH
Q 007842           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP-----------SAPDILKTEL  164 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~-----------~~~~~~~~~l  164 (587)
                      ++||.+|+.|-++|.....+-      .+.+.++.-+.++. +...|.+|...+....+           ...++.++.+
T Consensus        16 ~pdps~rk~aEr~L~~~e~q~------~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~i   89 (960)
T KOG1992|consen   16 SPDPSVRKPAERALRSLEGQQ------NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQI   89 (960)
T ss_pred             CCCCccCchHHHHHHHhccCC------CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHH
Confidence            456677777777766654431      11222222222333 45556555554443332           1223356677


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHH
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  244 (587)
                      ...+..++-+....++....+++..+++.- -+.-++.++|-+..-.+..+..+-.+....-.++-+....+...+.++.
T Consensus        90 kslIv~lMl~s~~~iQ~qlseal~~Ig~~D-FP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~  168 (960)
T KOG1992|consen   90 KSLIVTLMLSSPFNIQKQLSEALSLIGKRD-FPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWL  168 (960)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhccc-cchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHH
Confidence            777778777777889999999988887652 2456677888777777766665555555555555555544332233322


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHH-------HHHHHHHhHHHHHhhhCHH-
Q 007842          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAE-------VRIAAAGKVTKFCRILNPE-  314 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l--~d~~~~-------vr~~a~~~l~~l~~~~~~~-  314 (587)
                      -++..+               +.++..+      ..++.....+.  .+++..       +....++.+..+.-.--++ 
T Consensus       169 EIK~vL---------------d~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF  227 (960)
T KOG1992|consen  169 EIKLVL---------------DRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF  227 (960)
T ss_pred             HHHHHH---------------HhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence            222221               1111110      00111111111  011111       1111112222211100011 


Q ss_pred             --HHHHhHhHHHHHhcc--------C-Cc----HHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChH----
Q 007842          315 --LAIQHILPCVKELSS--------D-SS----QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPD----  373 (587)
Q Consensus       315 --~~~~~i~~~l~~~~~--------d-~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~----  373 (587)
                        ...+.-++.+.+++.        | .+    ..+|...|+.+.-.+.....+  .+.+.++.....++.+..++    
T Consensus       228 FEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD  307 (960)
T KOG1992|consen  228 FEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYD  307 (960)
T ss_pred             HHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHH
Confidence              122334455554443        1 11    367778887776665544332  23455555556666654433    


Q ss_pred             -HHHHHHHhhhhhhhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCc
Q 007842          374 -VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKV  449 (587)
Q Consensus       374 -vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~  449 (587)
                       ....|++.|..+++.-.-..  -.+.++..+.+...=++...|..-            .+.|.+.-+..+-+-++ .+.
T Consensus       308 ~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------eElFED~pleYiRRDlEGsDv  375 (960)
T KOG1992|consen  308 YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------EELFEDNPLEYIRRDLEGSDV  375 (960)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------HHHhccCHHHHHHHhcccCCc
Confidence             34455556665554211110  012233333333333333333332            22233333444444443 344


Q ss_pred             hHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccC---------------hH
Q 007842          450 YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMG---------------SE  509 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~---------------~~  509 (587)
                      ..-|.+|+..++.+++.+....   +...+-..+-+..++|  ||.-+..++..+..++...+               .+
T Consensus       376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~  455 (960)
T KOG1992|consen  376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD  455 (960)
T ss_pred             chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence            5567889999999998874321   1222222233345555  79999999999988875321               14


Q ss_pred             HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      ++...++|.+..--....|.+|..+++-+...-.+++++.. -..+|.+...+..+..-|..+|+.+++++-.+-
T Consensus       456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr  529 (960)
T KOG1992|consen  456 FFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR  529 (960)
T ss_pred             HHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence            56777888887755566888998888888777666665543 467888899889999999999999999875443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=4.3e-05  Score=75.15  Aligned_cols=450  Identities=13%  Similarity=0.130  Sum_probs=220.5

Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhh-HHhhhHhhcCCCChH-HH
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS-ACGLFHIAYPSAPDI-LK  161 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~-a~~~l~~~~~~~~~~-~~  161 (587)
                      ...++.-+.+=+.+.|+.-..-|+.+++.++..--.+.+...+..++.  +.+....+|.. |+.++ .++...++- -.
T Consensus       109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL-~L~r~spDl~~~  185 (938)
T KOG1077|consen  109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV--SGSSMDYVKQKAALCLL-RLFRKSPDLVNP  185 (938)
T ss_pred             HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHH-HHHhcCccccCh
Confidence            334444455545566777777788888877654333333333332222  11223334444 44444 555444332 23


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--h--
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--D--  237 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~--  237 (587)
                      .+...-+..++.|.+-.|-.++...+..+++..++ .+..-+.                .++.-|..++...+..  +  
T Consensus       186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~----------------~avs~L~riv~~~~t~~qdYT  248 (938)
T KOG1077|consen  186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLP----------------LAVSRLSRIVVVVGTSLQDYT  248 (938)
T ss_pred             hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHH----------------HHHHHHHHHHhhcccchhhce
Confidence            46666777777777766666676777767666532 2211111                1222222222211110  0  


Q ss_pred             --------hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC-hHHHHHHHHHhHHHHH
Q 007842          238 --------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFC  308 (587)
Q Consensus       238 --------~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~  308 (587)
                              ..-.++.++..+-.-.++.+|....+++..+.....+...           .++. ....+.+.+.-.-.++
T Consensus       249 yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~-----------~k~vq~~na~naVLFeaI~l~  317 (938)
T KOG1077|consen  249 YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK-----------SKKVQHSNAKNAVLFEAISLA  317 (938)
T ss_pred             eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc-----------ccchHhhhhHHHHHHHHHHHH
Confidence                    0111233333333334455666666666555543221110           0111 1223333333333344


Q ss_pred             hhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCChHHHHHHHHhhhhhh
Q 007842          309 RILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       309 ~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~  386 (587)
                      -+.+.+ .....-...+.+++.+.+..+|.-+.+.+..++..-.......+-...+...|+ +.+..+|+.++..|..++
T Consensus       318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc  397 (938)
T KOG1077|consen  318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC  397 (938)
T ss_pred             HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence            444433 333455666777788888889999998888887653222222233566666676 778899999999999988


Q ss_pred             hhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Q 007842          387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRL  463 (587)
Q Consensus       387 ~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l  463 (587)
                      ..-..+    .++.-+.+.+..-++.+|+..+--+..+++.+..+.  ...+..+++++   +|-..      -+.|-.+
T Consensus       398 D~~Nak----~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vs------deVW~Rv  465 (938)
T KOG1077|consen  398 DVSNAK----QIVAELLQYLETADYSIREEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVS------DEVWYRV  465 (938)
T ss_pred             chhhHH----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhccccc------HHHHHHh
Confidence            764433    344555566666788888887766666666554332  11222222221   22110      0111112


Q ss_pred             HHH-hChHHHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842          464 AEE-FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       464 ~~~-~~~~~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l  538 (587)
                      ++. ...+.........+++.+..+  ....-.++...+|.++..+..+  -.....+..+..-+.--++..|...+.+.
T Consensus       466 vQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTy  545 (938)
T KOG1077|consen  466 VQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTY  545 (938)
T ss_pred             heeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHH
Confidence            211 111112222222333333322  1122233344444444322110  01122334444444445667777777777


Q ss_pred             HHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842          539 QSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       539 ~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      ..++...++  ....+...+....+-.|.+++.+|.+=|.
T Consensus       546 iKl~nl~PE--i~~~v~~vFq~~~n~~D~ElQqRa~EYLq  583 (938)
T KOG1077|consen  546 IKLINLFPE--IKSNVQKVFQLYSNLIDVELQQRAVEYLQ  583 (938)
T ss_pred             HHHHhhChh--hhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence            777666532  33456666666666677888877776554

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.84  E-value=1.1e-06  Score=90.71  Aligned_cols=329  Identities=12%  Similarity=0.107  Sum_probs=224.4

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch-hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC  238 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  238 (587)
                      ........+..+..-..+..-.+++..+..++...+.+. ....+++.+-.+.   +..||..+...+..+.+..+... 
T Consensus        95 ~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~-  170 (815)
T KOG1820|consen   95 DIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDAS-  170 (815)
T ss_pred             hhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc---ccccchhhcccchhhhhhcCCCc-
Confidence            345566666667777777777777777777777766543 2233344444443   66789999998888887766531 


Q ss_pred             hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcC---CChHHHHHHHHHhHHHH------
Q 007842          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR---DNEAEVRIAAAGKVTKF------  307 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l------  307 (587)
                      ...+              .+..+....+.+....|....  ...--+.......   ++++.-+...-......      
T Consensus       171 ~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~  236 (815)
T KOG1820|consen  171 KPLL--------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFT  236 (815)
T ss_pred             Cccc--------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCC
Confidence            1111              155566666666666553211  1111111111111   22222211111111110      


Q ss_pred             -----HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007842          308 -----CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNII  379 (587)
Q Consensus       308 -----~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (587)
                           ...+.+....+.+-+.+...+.+++|.-|..+++.+....+.-+   ...+...+...+...+.|.|..|...++
T Consensus       237 s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa  316 (815)
T KOG1820|consen  237 SPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAA  316 (815)
T ss_pred             CCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHH
Confidence                 11223445667788888899999999999999998887765544   1223444555666677899999999999


Q ss_pred             Hhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHH
Q 007842          380 SKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA  457 (587)
Q Consensus       380 ~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  457 (587)
                      ..+..++..++..  .+...+.|.+.+.+.+....+|..+..++..+++..+    ...+.+.+..++++.++.+|....
T Consensus       317 ~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~  392 (815)
T KOG1820|consen  317 QILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECL  392 (815)
T ss_pred             HHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHH
Confidence            9999999887754  3456778899999999999999999999988887543    345677888889999999999999


Q ss_pred             HHHHHHHHHhCh----HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842          458 NNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       458 ~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~  510 (587)
                      ..+....+.+++    ....+.+.|.+....+|.+..||.+|..+++.+...+|.+.
T Consensus       393 ~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~  449 (815)
T KOG1820|consen  393 LLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV  449 (815)
T ss_pred             HHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999988873    12457889999999999999999999999999999998764

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=9.8e-05  Score=73.18  Aligned_cols=170  Identities=16%  Similarity=0.104  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhh
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH  475 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  475 (587)
                      +..-|.+.+++.|+++-+|...+-.+..-....|....   +-.++--..+|.+..||.+|+.++|-++-.      ...
T Consensus       518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka---ir~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~  588 (929)
T KOG2062|consen  518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA---IRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPE  588 (929)
T ss_pred             hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh---HHHhhcccccccchHHHHHHHHHheeeEec------Chh
Confidence            34567788899999999999876665543333343222   222222337899999999999999987632      134


Q ss_pred             hHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHh
Q 007842          476 ITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEK  552 (587)
Q Consensus       476 l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~  552 (587)
                      ..|..+.++. +-|+.||..+..++|-.+..-|..    ..+..+..+.+|++.-||+.|+-+++-|.-+..+.  .-..
T Consensus       589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~  664 (929)
T KOG2062|consen  589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN  664 (929)
T ss_pred             hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence            5666666655 458999999999999999888864    56677777888999999999999999887554333  2234


Q ss_pred             hHHHHHHHhcCCCCcc--HHHHHHHHHH
Q 007842          553 TIRPCLVELTEDPDVD--VRFFATQAIQ  578 (587)
Q Consensus       553 ~i~~~l~~l~~d~d~~--Vr~~a~~al~  578 (587)
                      .+...+.+...|+-.+  +++.|.-|=+
T Consensus       665 ~frk~l~kvI~dKhEd~~aK~GAilAqG  692 (929)
T KOG2062|consen  665 GFRKQLEKVINDKHEDGMAKFGAILAQG  692 (929)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            5666666666666544  5665554433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.80  E-value=7.4e-07  Score=88.06  Aligned_cols=236  Identities=17%  Similarity=0.280  Sum_probs=176.9

Q ss_pred             CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CC
Q 007842          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  409 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~  409 (587)
                      .++.-+....+.|.++...++.......++|.+...+.+.  ...-..+..+-.+........+...++|.+...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            4556677888888888888887777888899888877543  22222223333344444445566788888888777 55


Q ss_pred             ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccCCc
Q 007842          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH  488 (587)
Q Consensus       410 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~  488 (587)
                      +-+++..+++.+..+.+...++.+.+.++|++...++|.+..++..++..+..+.+.+...+..+.++|.+..+ ++..+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            67788889999999999999999999999999999999999999999999999999888877889999999886 56668


Q ss_pred             hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc--hHHHHhhHHHHHHHhcCCCC
Q 007842          489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPD  566 (587)
Q Consensus       489 ~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~d  566 (587)
                      ..+|.+++.|++.+++.++.....+.++|.+.. .+-.++.+-....++...+.-...  .+...+.++|.+..+...+-
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            899999999999999887776566666665544 455577777777777766553322  25556788888888765444


Q ss_pred             ccH
Q 007842          567 VDV  569 (587)
Q Consensus       567 ~~V  569 (587)
                      -++
T Consensus       522 L~~  524 (700)
T KOG2137|consen  522 LNG  524 (700)
T ss_pred             ccH
Confidence            443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.80  E-value=0.00013  Score=74.94  Aligned_cols=367  Identities=15%  Similarity=0.150  Sum_probs=212.5

Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC--hhhhhhch
Q 007842          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHI  242 (587)
Q Consensus       167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l  242 (587)
                      .+..++...+.-+| .+...|.+++.....+  -....+++.+..+++.++..+...++..|..++-.-.  .......+
T Consensus       254 k~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi  332 (708)
T PF05804_consen  254 KLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI  332 (708)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            33344444444444 4455566666543321  2334567777777877788888888888887763322  13345568


Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHH
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ  318 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~  318 (587)
                      ++.+.+++..++..++..+++.|.++...-.  .......++|.+..+++|+  ..|..++..|..++..-...  ....
T Consensus       333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T  410 (708)
T PF05804_consen  333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT  410 (708)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc
Confidence            8889999998889999999999988764311  1223446889999999875  45566777777776521111  1112


Q ss_pred             hHhHHHHHhc-cCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHh-hcCCChHHHHHHHHhhhhhhhhhchh--
Q 007842          319 HILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGID--  392 (587)
Q Consensus       319 ~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~--  392 (587)
                      ..+|.+.+++ ..++.++...++..+.+++..-....  .....++.+... ++..++ +   .++.+..++.+-|..  
T Consensus       411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~-l---LlKlIRNiS~h~~~~k~  486 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP-L---LLKLIRNISQHDGPLKE  486 (708)
T ss_pred             chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH-H---HHHHHHHHHhcCchHHH
Confidence            3567766643 44566676666666666654322111  111223333332 332222 2   223444444443321  


Q ss_pred             hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhCh----hhhH--HHHHHHHHHhcCCC--chHHHHHHHHHHHHH
Q 007842          393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV----GFFD--DKLGALCMQWLQDK--VYSIRDAAANNLKRL  463 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~----~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l  463 (587)
                      .+.+. +..+...+.. +++   ...++++|.+++.--+    ..+.  -.++|.+.+.+...  ..++...++..+|.+
T Consensus       487 ~f~~~-i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl  562 (708)
T PF05804_consen  487 LFVDF-IGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL  562 (708)
T ss_pred             HHHHH-HHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            12222 2223333333 333   3566667666654311    1122  24788888888543  346888888888887


Q ss_pred             HHHhChH--HHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccCh-HHH--HhhHHHHHHhhcCCCChhHHHHHHH
Q 007842          464 AEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS-EIT--CSRLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       464 ~~~~~~~--~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~l~d~~~~vR~~~~~  536 (587)
                      +..-...  .....+++.+.++++..  +...-...+.++..+..+-.. +..  ...+...++.+++|+++.||..+-.
T Consensus       563 a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~  642 (708)
T PF05804_consen  563 ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN  642 (708)
T ss_pred             HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence            7532211  12356778887776544  455555666777776653211 111  2457778999999999999999999


Q ss_pred             HHHHhhhh
Q 007842          537 VLQSLIPI  544 (587)
Q Consensus       537 ~l~~l~~~  544 (587)
                      +|..+...
T Consensus       643 ~Ldii~e~  650 (708)
T PF05804_consen  643 ALDIIAEY  650 (708)
T ss_pred             HHHHHHHh
Confidence            99887654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.78  E-value=9.6e-08  Score=71.21  Aligned_cols=84  Identities=23%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHHhcCCCC
Q 007842          491 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPD  566 (587)
Q Consensus       491 ~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~d  566 (587)
                      .|..++.++..++..++..  .+.+.++|.++..+.|+++.||..++++|.+++...+.+.  +...+++.|-++..|+|
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4778888888887777664  3578899999999999999999999999999998877663  45789999999999999


Q ss_pred             ccHHHHHH
Q 007842          567 VDVRFFAT  574 (587)
Q Consensus       567 ~~Vr~~a~  574 (587)
                      ++||..|.
T Consensus        82 ~~Vr~~a~   89 (97)
T PF12755_consen   82 ENVRSAAE   89 (97)
T ss_pred             hhHHHHHH
Confidence            99998873

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=0.0005  Score=70.86  Aligned_cols=307  Identities=14%  Similarity=0.115  Sum_probs=170.4

Q ss_pred             hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-------------chhhhHHHHHHHHhhhCCchhH---HHH
Q 007842          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------AHLKTDIMSIFEDLTQDDQDSV---RLL  221 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------------~~~~~~l~~~l~~l~~d~~~~v---r~~  221 (587)
                      |+....+++.+..++++.+...-..++-++..+++...-             +.+.+.++.....++.+++...   .+.
T Consensus       122 p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~kl  201 (1010)
T KOG1991|consen  122 PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKL  201 (1010)
T ss_pred             cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            345677788888888887777667777777777766531             1233445555556666654432   222


Q ss_pred             HHHHHHHHh-hhcChhhh----hhchHHHHHHhc-----------------cCCcHHHHHHHHHHHHHHHHHhCCCcccc
Q 007842          222 AVEGCAALG-KLLEPQDC----VAHILPVIVNFS-----------------QDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (587)
Q Consensus       222 a~~~l~~l~-~~~~~~~~----~~~l~~~l~~~~-----------------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~  279 (587)
                      .++++-+++ -.+|....    ...-+.++...+                 .++-|++++=|+..+.++....|+.....
T Consensus       202 IlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~  281 (1010)
T KOG1991|consen  202 ILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV  281 (1010)
T ss_pred             HHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc
Confidence            333332222 12332211    111122222222                 23467899999999999998887532111


Q ss_pred             ----------------chHHHHHHhcC---C---ChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc---------
Q 007842          280 ----------------DLVPAYVRLLR---D---NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---------  328 (587)
Q Consensus       280 ----------------~l~~~l~~~l~---d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---------  328 (587)
                                      .++..+.+.+.   .   -.++|-..++.-+.   ..+......+.+-|.+..++         
T Consensus       282 ~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~---~~Vs~~~twkll~PHl~~ii~~vIFPlmc  358 (1010)
T KOG1991|consen  282 PEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLE---QCVSHASTWKLLKPHLQVIIQDVIFPLMC  358 (1010)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH---HhccHHHHHHHhhhHHHHHHHHhhhhhcC
Confidence                            12222222211   0   01222222222221   12222222222333322111         


Q ss_pred             ----------cCCcHHHHH-------------HHHHHHHccccccchhHHHHhHHHHHHHhhc------CC--ChHHHHH
Q 007842          329 ----------SDSSQHVRS-------------ALASVIMGMAPLLGKDATIEQLLPIFLSLLK------DE--FPDVRLN  377 (587)
Q Consensus       329 ----------~d~~~~vr~-------------~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~--~~~vr~~  377 (587)
                                .|+...+|.             ++...+..++...|++. .+.+++++...++      .+  ++.-+.+
T Consensus       359 ~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~~rqkdG  437 (1010)
T KOG1991|consen  359 FNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET-LPKILSFIVDILTRYKEASPPNKNPRQKDG  437 (1010)
T ss_pred             CCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhhcccCCCccChhhhhh
Confidence                      245555654             55556666666666654 4566777777766      33  3455667


Q ss_pred             HHHhhhhhhhhhchh-----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH-hhChhhhHHHHHHHHHHhcC-CCch
Q 007842          378 IISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDDKLGALCMQWLQ-DKVY  450 (587)
Q Consensus       378 a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~-d~~~  450 (587)
                      |+..++.++..+.++     .+...+.+.+...++++.-..|..++..++.++. .+..............+.+. |++.
T Consensus       438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l  517 (1010)
T KOG1991|consen  438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL  517 (1010)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence            899999888776543     2223344555556788889999999999999883 34433334455666666666 9999


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 007842          451 SIRDAAANNLKRLAEEFG  468 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~  468 (587)
                      .||..|+-+|..++....
T Consensus       518 PV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  518 PVRVEAALALQSFISNQE  535 (1010)
T ss_pred             chhhHHHHHHHHHHhcch
Confidence            999999999999987544

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.74  E-value=9.3e-05  Score=72.52  Aligned_cols=416  Identities=14%  Similarity=0.077  Sum_probs=224.4

Q ss_pred             HHHHHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhc
Q 007842          160 LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       160 ~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~  233 (587)
                      ++..-.+.+..+.  ++++++.+......++.++..-..   +......++-+.+++.+.+ ..++.++...+..+...-
T Consensus        48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            3444556666554  455677777778888887765432   1233445667778888777 799999999999988765


Q ss_pred             Ch-----hhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCCc------cccchHHHHHHhcCCChHHHHHHHH
Q 007842          234 EP-----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLRDNEAEVRIAAA  301 (587)
Q Consensus       234 ~~-----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~  301 (587)
                      +.     ......+++.+..+...+ ....+..+.     ++.+.....      .-..+...+.-++.-.+..+|.+|.
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~-----~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL  202 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS-----RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAAL  202 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh-----hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHH
Confidence            42     122344555555544411 111111111     111111100      0112333333333444678899999


Q ss_pred             HhHHHHHhhhC-HH----H-----HHHhHhH--HHHHhccCCcHHHHHHHHHHHHcccccc-chh-----H-H---H-Hh
Q 007842          302 GKVTKFCRILN-PE----L-----AIQHILP--CVKELSSDSSQHVRSALASVIMGMAPLL-GKD-----A-T---I-EQ  358 (587)
Q Consensus       302 ~~l~~l~~~~~-~~----~-----~~~~i~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-----~-~---~-~~  358 (587)
                      .++......+- ++    .     .-..+.+  .+.++.+|++...|...+.++..+...- ..+     . +   . +.
T Consensus       203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~  282 (678)
T KOG1293|consen  203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL  282 (678)
T ss_pred             HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence            98884222211 11    0     1122334  4557788888888888777777654322 100     0 0   0 01


Q ss_pred             HHH-HHHHhhcCCChHHHHHHHHh---hhhhhhhhchhhHHhhHHHHHHHH------hcCCChHHHHHHHHHH---HHHH
Q 007842          359 LLP-IFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYI---PLLA  425 (587)
Q Consensus       359 l~~-~l~~~l~d~~~~vr~~a~~~---l~~l~~~~~~~~~~~~~l~~l~~~------~~~~~~~vR~~~~~~l---~~l~  425 (587)
                      +.. ....+..|+-...-..+...   +..+.+.+...++....++...++      +.....+.|..++.-.   ...+
T Consensus       283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~  362 (678)
T KOG1293|consen  283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE  362 (678)
T ss_pred             HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence            111 11122223211111111111   111222222222222222222222      1334455554443321   1111


Q ss_pred             HhhChh---hhHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hChHHHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842          426 SQLGVG---FFDDK-LGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAMQHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       426 ~~~~~~---~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                      ...+..   .+.+. ....+....--.+..++.+|+.++..+.+.   +..+.-...+...+.+++.||+..+..+++.+
T Consensus       363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lga  442 (678)
T KOG1293|consen  363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGA  442 (678)
T ss_pred             hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHH
Confidence            111211   11111 111122222345677888998888877653   22222345667778888899999999999999


Q ss_pred             HHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHHhcCCCCccHHH
Q 007842          499 ISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRF  571 (587)
Q Consensus       499 l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~  571 (587)
                      +.++.-.+++   .+.....+..+..++.++++++|..+.++|..+.-.....    .........+..+.+|+|+.|+.
T Consensus       443 i~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqe  522 (678)
T KOG1293|consen  443 ICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQE  522 (678)
T ss_pred             HHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHH
Confidence            9999877665   3456778889999999999999999999999887654433    22223345566688999999999


Q ss_pred             HHHHHHHHH
Q 007842          572 FATQAIQSI  580 (587)
Q Consensus       572 ~a~~al~~l  580 (587)
                      .+.+.+..+
T Consensus       523 q~fqllRNl  531 (678)
T KOG1293|consen  523 QCFQLLRNL  531 (678)
T ss_pred             HHHHHHHHh
Confidence            887776554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.73  E-value=5.9e-05  Score=77.47  Aligned_cols=372  Identities=14%  Similarity=0.148  Sum_probs=224.3

Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--Cccccc
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMD  280 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~  280 (587)
                      .-+..++...+.-.| .++..|..+++...-  ......+++.+.++++..+..+...++..+.+++-...+  ......
T Consensus       253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g  331 (708)
T PF05804_consen  253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG  331 (708)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            334444444444444 667778888876543  234566888899999888888988888888887643221  223456


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-h-hHHH
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATI  356 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~  356 (587)
                      +++.+.+++..++..++..+++.|..++..-...  -....++|.+..++.+++  .|..+...+..++..-. + ....
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence            8999999999999999999999999887533221  233457888889888765  45556666666654211 1 1112


Q ss_pred             HhHHHHHHHhhcC-CChHHHHHHHHhhhhhhhhhchhh-H-HhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhCh--
Q 007842          357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--  430 (587)
Q Consensus       357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~--  430 (587)
                      ...+|.+.+++.. +++.+...++..+..++..-...+ + ....++.+.+. ++..+    ..+++.+..++.+-|+  
T Consensus       410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k  485 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLK  485 (708)
T ss_pred             cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHH
Confidence            3456777766543 445555444444333332211110 0 01223444332 22222    2244555555555432  


Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HhChHHH--hhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcc
Q 007842          431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE-EFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLAPV  505 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~--~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~  505 (587)
                      ..|.+.+.+++-.....++.+....++.+|+++.- ..+...+  ...++|.+.+.+..+  ...+...++..+|.++..
T Consensus       486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d  565 (708)
T PF05804_consen  486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD  565 (708)
T ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence            23444444443333333455554445555544432 1122212  247899998888654  346777788888888753


Q ss_pred             cChHH--HHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHH---HHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842          506 MGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       506 ~~~~~--~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~---~~~~i~~~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      -....  ....+++.++.+++.+  +.+.-...+.++.++..+-....   ....+...+..++.|+.+.||..+-.+|.
T Consensus       566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ld  645 (708)
T PF05804_consen  566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALD  645 (708)
T ss_pred             HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            22222  2456788888887654  57777788888888876532221   12467888899999999999999999999


Q ss_pred             HHHHh
Q 007842          579 SIDHV  583 (587)
Q Consensus       579 ~l~~~  583 (587)
                      .++++
T Consensus       646 ii~e~  650 (708)
T PF05804_consen  646 IIAEY  650 (708)
T ss_pred             HHHHh
Confidence            98874

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.73  E-value=3e-05  Score=76.63  Aligned_cols=289  Identities=14%  Similarity=0.123  Sum_probs=172.7

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhh-------H-HhhHHHHHHHHhcCC-----C--CcchhhHHhhhHhhcCCCChHHHHH
Q 007842           99 ETCVRDKAVESLCRIGSQMRESD-------L-VDWYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE  163 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~-------~-~~~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~  163 (587)
                      +...-...+.++..+......+.       . ...++|.+.++....     .  ..+-.....+++.+...++++..+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            44455566666666655432211       1 122566555544322     1  2222334556666777777765544


Q ss_pred             HHHHHHHhcC----------CCC--hHHHHHHHHhHHHHHHhhccchhh---hHHHHHHHHhh-hCCchhHHHHHHHHHH
Q 007842          164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLT-QDDQDSVRLLAVEGCA  227 (587)
Q Consensus       164 l~~~l~~l~~----------d~~--~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~l~-~d~~~~vr~~a~~~l~  227 (587)
                      +..-+..+..          +.+  ..........+..+...+.++...   ..++..+..+. +.+++..|..+++.+.
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            4544433322          111  112333444445555555543322   22444444443 4445889999999999


Q ss_pred             HHhhhcChhhhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 007842          228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (587)
Q Consensus       228 ~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (587)
                      .+.+.++++...+.++..+.... .......|..+.+.+..+.+.+  ........++..+..++.|  +.+...+++++
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99999876544445555444444 4555667778888887777653  2222334678888888887  67888888988


Q ss_pred             HHHHhhhC---------------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHH---HHhHHHHHHHh
Q 007842          305 TKFCRILN---------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL  366 (587)
Q Consensus       305 ~~l~~~~~---------------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~  366 (587)
                      +.+....+               .+.+...++|.+.+...+.+...|.....++..+....+...+   .+.++|.+.+.
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            88765421               2234466777777777766666777777777777777765443   45678888888


Q ss_pred             hcCCChHHHHHHHHhhhhhhhhh
Q 007842          367 LKDEFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~  389 (587)
                      +.-++.+++.++++++..+...-
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcC
Confidence            87777778888888777776543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.9e-05  Score=74.00  Aligned_cols=465  Identities=13%  Similarity=0.118  Sum_probs=255.9

Q ss_pred             hcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC--CCcchhhHHhhhHhhcCCCChHHHHHHHH-HHHHh
Q 007842           95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAPDILKTELRS-IYTQL  171 (587)
Q Consensus        95 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l  171 (587)
                      ++|+++.-|--|+..+.++...-      +.++.....+..+.  .+.+. .|+++             .++.. ++..+
T Consensus        56 lkd~~~~~ra~alqv~~~~l~gs------k~fls~a~~~~~~~ftpf~v~-~a~si-------------~~~~r~l~~~l  115 (728)
T KOG4535|consen   56 LKDPSPKTRACALQVLSAILEGS------KQFLSVAEDTSDHAFTPFSVM-IACSI-------------RELHRCLLLAL  115 (728)
T ss_pred             cCCCChhHHHHHHHHHHHHHHhh------HHHHHHHhccCCcCCCchHHH-HHHHH-------------HHHHHHHHHHH
Confidence            57899999999998888875431      11222222222111  11111 11111             11122 23334


Q ss_pred             cCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842          172 CQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  247 (587)
Q Consensus       172 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  247 (587)
                      ....++.+-..+.+++..++...+-..    +...+...+..+++..++.||..++..++.+...-.+   .+++-..+.
T Consensus       116 ~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~---~pei~~~~~  192 (728)
T KOG4535|consen  116 VAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP---LPEVQLLLQ  192 (728)
T ss_pred             HHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC---CHHHHHHhc
Confidence            445566777777888888877654322    3445566677788899999999999999888754322   111211121


Q ss_pred             Hhcc----------CCcHHHHHHHHHHHHHHHHHhCCC-ccccc-----------------hHHHHHHhcCCC--hHHHH
Q 007842          248 NFSQ----------DKSWRVRYMVANQLYELCEAVGPE-PTRMD-----------------LVPAYVRLLRDN--EAEVR  297 (587)
Q Consensus       248 ~~~~----------d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~-----------------l~~~l~~~l~d~--~~~vr  297 (587)
                      ..++          .++|.-+-.+--.+.+....-++. ..+..                 ...-....++..  -..+|
T Consensus       193 ~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~r  272 (728)
T KOG4535|consen  193 QPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMR  272 (728)
T ss_pred             CCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhH
Confidence            1111          112222111111221111110000 00001                 111112222221  24589


Q ss_pred             HHHHHhHHHHHhhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----HHHH--hHHHHHHHhh---
Q 007842          298 IAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIE--QLLPIFLSLL---  367 (587)
Q Consensus       298 ~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~--~l~~~l~~~l---  367 (587)
                      ..|+..+..++.+++-. -+.-++...+...+.+..+.++..++.++..++...+.+    ....  .--|+..-++   
T Consensus       273 le~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p  352 (728)
T KOG4535|consen  273 LEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGP  352 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCC
Confidence            99999999888887753 333456666677788889999988888888776655421    1100  0111111112   


Q ss_pred             ------cCCChHHHHHHHHhhhhhhhhh--chhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChh---hhHH
Q 007842          368 ------KDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG---FFDD  435 (587)
Q Consensus       368 ------~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~---~~~~  435 (587)
                            ....+....+++.++.++...-  +-+.-.....+.+..-+.|. +.-+|.+++..+....-+-+..   .|..
T Consensus       353 ~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~  432 (728)
T KOG4535|consen  353 LPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVA  432 (728)
T ss_pred             ChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHH
Confidence                  1123445566666666665422  11111235566776666553 4446666666654433222211   1333


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh-----HH----HhhhhHHHHHhhcc---CCchhHHHHHHHHHHHhh
Q 007842          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-----EW----AMQHITPQVLEMIN---NPHYLYRMTILRAISLLA  503 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~----~~~~l~~~l~~~l~---d~~~~~R~~a~~~l~~l~  503 (587)
                      .....+...+.|....+|..+.-+++.+...+-.     +.    +...++..+....+   -.+++||-.+.++++++.
T Consensus       433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            4455667778899999999999999999876521     11    22333434433322   236889999999999998


Q ss_pred             cccChHH--HHhhHHH-HHHhh----cCCCChhHHHHHHHHHHHhhhh----hchHHHHhhHHHHHHHhcC-CCCccHHH
Q 007842          504 PVMGSEI--TCSRLLP-VVINA----SKDRVPNIKFNVAKVLQSLIPI----VDQSMVEKTIRPCLVELTE-DPDVDVRF  571 (587)
Q Consensus       504 ~~~~~~~--~~~~il~-~l~~~----l~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~i~~~l~~l~~-d~d~~Vr~  571 (587)
                      +.+.+-.  ....++. ...++    .......||-++|.+++++.++    +....+...++++|-.+.. .....||.
T Consensus       513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi  592 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI  592 (728)
T ss_pred             HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence            7554210  1111221 12221    2234678999999999999875    3444677889999999654 55779999


Q ss_pred             HHHHHHHHHHH
Q 007842          572 FATQAIQSIDH  582 (587)
Q Consensus       572 ~a~~al~~l~~  582 (587)
                      .|+.||..-++
T Consensus       593 ~AA~aL~vp~~  603 (728)
T KOG4535|consen  593 RAAAALSVPGK  603 (728)
T ss_pred             hhhhhhcCCCC
Confidence            99999876544

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.71  E-value=0.00029  Score=69.22  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHH
Q 007842          408 DRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVL  481 (587)
Q Consensus       408 ~~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~  481 (587)
                      .++..++.+++..+..+++.+   ..+.-..++...+++++.|++..|...+..++.+++-.+++   .|.....+..+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            345566777776666665543   22222344556677778999999999999999999987765   355678899999


Q ss_pred             hhccCCchhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          482 EMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       482 ~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      .+..++++.+|..+.+++.++.-......    ..+.-...+..+.+||++.|...+.+.+.++.-.
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999975544322    2333455677888999999999999999987654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.69  E-value=1e-07  Score=71.47  Aligned_cols=86  Identities=28%  Similarity=0.409  Sum_probs=65.2

Q ss_pred             HHHHHhhc-cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHH
Q 007842          477 TPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR  555 (587)
Q Consensus       477 ~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~  555 (587)
                      +|.+.+.+ +++++.+|..++.+++.+..        +..+|.+..+++|+++.||..++.+|+.+..        ...+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45666766 88889999999999885532        4678888888899999999999999998742        3567


Q ss_pred             HHHHHhcC-CCCccHHHHHHHHHH
Q 007842          556 PCLVELTE-DPDVDVRFFATQAIQ  578 (587)
Q Consensus       556 ~~l~~l~~-d~d~~Vr~~a~~al~  578 (587)
                      +.|.+++. |++..||..|..+|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            77777554 455667888888875

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=0.0011  Score=69.64  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             ChhhhHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhh
Q 007842          429 GVGFFDDKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLA  503 (587)
Q Consensus       429 ~~~~~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~  503 (587)
                      |+......+.|++.....    -.++.++.+|.-+++.++- +..+ |.+.-+|.++.+++ .|++.+|.+++-++|.++
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence            544555667888877763    3568999999999999985 3333 44556888888775 889999999999999998


Q ss_pred             cccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          504 PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       504 ~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                      -.++.  ..+...+.+...+.|+++.||.+++.++..++.+  ...-...-++-+..++.|+++.|+..|..=+..+
T Consensus       990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            76654  3466778899999999999999999999988754  1111234566677788999999999998544443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.64  E-value=5.6e-05  Score=71.05  Aligned_cols=291  Identities=15%  Similarity=0.104  Sum_probs=183.2

Q ss_pred             hhHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccc----cchHHH-HHH-h
Q 007842          216 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----MDLVPA-YVR-L  288 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~----~~l~~~-l~~-~  288 (587)
                      ..+|..+.+.+..++.+++- ..+.-.+...+.....+..+.++..++..+.+++..++.+..+    ..+... |-. +
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~  348 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM  348 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence            36899999999998888764 2345567777888888999999999999999998877632211    111111 111 1


Q ss_pred             c--------CC-ChHHHHHHHHHhHHHHHhh----hCHHHHHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchh-
Q 007842          289 L--------RD-NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD-  353 (587)
Q Consensus       289 l--------~d-~~~~vr~~a~~~l~~l~~~----~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~-  353 (587)
                      +        .| ..+....+.+.++..+...    +++.  .....+.+...+.|. +.-+|.++..+++.+.-.-+.. 
T Consensus       349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~  426 (728)
T KOG4535|consen  349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ  426 (728)
T ss_pred             ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence            1        12 2244555666666555432    1221  135566677666665 5568888888888766544321 


Q ss_pred             --HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---------hhHHhhHHHHHHHHh---cCCChHHHHHHHH
Q 007842          354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------DLLSQSLLPAIVELA---EDRHWRVRLAIIE  419 (587)
Q Consensus       354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~~l~~l~~~~---~~~~~~vR~~~~~  419 (587)
                        .+.......+...+.|..-++|..++.+++.+...+-.         +.+....+..+....   .-.+.+||..+++
T Consensus       427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence              23344455566677787889999999999998865521         122223333333322   2346889999999


Q ss_pred             HHHHHHHhhCh---hhhHH----HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh----HHHhhhhHHHHHhhccC-C
Q 007842          420 YIPLLASQLGV---GFFDD----KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-P  487 (587)
Q Consensus       420 ~l~~l~~~~~~---~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d-~  487 (587)
                      .++.+.+.+.+   -.+.+    .+...+-.........||..++.+++++++.-..    ......+++.+..++.+ .
T Consensus       507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~  586 (728)
T KOG4535|consen  507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK  586 (728)
T ss_pred             HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence            99988776531   11111    1112222222345678999999999999974322    22457788888887654 6


Q ss_pred             chhHHHHHHHHHHHhhcccCh
Q 007842          488 HYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       488 ~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      |+++|..|..++..-.+..+.
T Consensus       587 NFKVRi~AA~aL~vp~~re~~  607 (728)
T KOG4535|consen  587 NFKVRIRAAAALSVPGKREQY  607 (728)
T ss_pred             cceEeehhhhhhcCCCCcccc
Confidence            899999999998877664443

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.61  E-value=0.00011  Score=74.77  Aligned_cols=127  Identities=13%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCCh
Q 007842          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP  528 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  528 (587)
                      +-||..++-++++++-.-+  ...+..+|.+.+-+. .....+|.+.+-+++.++.....  +.+..+|.+...+.|+++
T Consensus       945 ~~vra~~vvTlakmcLah~--~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHD--RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchH
Confidence            4588888899999885433  356778998877554 34567898888888888753321  457789999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhchHHHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          529 NIKFNVAKVLQSLIPIVDQSMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~~~~~~~-~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .||..++-.|.++... +.-.+. ..++..+.. +-|..++||.-|.-.++.+-+
T Consensus      1021 iVRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF-GIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             HHHHHHHHHHHHHHhh-hhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHh
Confidence            9999999999998753 222222 233344333 468889999999888877644

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.1e-05  Score=69.75  Aligned_cols=226  Identities=18%  Similarity=0.213  Sum_probs=135.3

Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC--ChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      +..+.+...|.+.-.+...+.++++..        ...-+|.+...+.|.  .+-||-.|..+|+.+..        +..
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~  101 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES  101 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence            344444455555555556666665554        123456666666554  46677777777777652        345


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCch--------HHHHHHHHHHHHHHHHhChH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY--------SIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--------~vr~~a~~~l~~l~~~~~~~  470 (587)
                      .+.+.++.+|+-..+|..+..++..+--.-+.+.. ....|.. .  .|+.+        +.|......=..+...+..-
T Consensus       102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~-S--vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am  177 (289)
T KOG0567|consen  102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYI-S--VDPAPPANLSSVHELRAELLDETKPLFERYRAM  177 (289)
T ss_pred             HHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccc-c--CCCCCccccccHHHHHHHHHhcchhHHHHHhhh
Confidence            66666666777777777655555444211000000 0000000 0  11111        11211111111111111111


Q ss_pred             HH-----hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhh
Q 007842          471 WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       471 ~~-----~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~  543 (587)
                      |.     .+.-+..+.+.+.+++.-.|..+..++|.+-.        +..+|.+.+.+.|.  ++-||..++++|+.++.
T Consensus       178 F~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~  249 (289)
T KOG0567|consen  178 FYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD  249 (289)
T ss_pred             hHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence            11     13456777788888889999999999999865        45577777777654  78899999999999976


Q ss_pred             hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       544 ~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                              +..++.|.+++.|+++-||..+.-||+.+..
T Consensus       250 --------e~~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  250 --------EDCVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             --------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence                    4789999999999999999999999987653

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.57  E-value=6.3e-07  Score=66.86  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=52.7

Q ss_pred             HHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCCh
Q 007842          297 RIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP  372 (587)
Q Consensus       297 r~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  372 (587)
                      |++++-+|..++..++..  .+.+.++|.+...+.|++++||..+++++.+++...+.+.  +.+.+++.+.+++.|.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            566666666666655543  4556677777777777777777777777777766554332  245566666667777777


Q ss_pred             HHHHHH
Q 007842          373 DVRLNI  378 (587)
Q Consensus       373 ~vr~~a  378 (587)
                      .||.+|
T Consensus        83 ~Vr~~a   88 (97)
T PF12755_consen   83 NVRSAA   88 (97)
T ss_pred             hHHHHH
Confidence            776655

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=0.00023  Score=67.55  Aligned_cols=255  Identities=17%  Similarity=0.148  Sum_probs=158.6

Q ss_pred             HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHHH-HhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  394 (587)
                      ..++-.+..-..|++..+|..++..+++.+...+...  +...++..+. .+..+.+.+|...++.+|..+.+.......
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            3455556666789999999999999999998765432  3444455444 444556789999999999998887766655


Q ss_pred             HhhHHHH---HHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHH----HHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842          395 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLG----ALCMQWLQDKVYSIRDAAANNLKRLA  464 (587)
Q Consensus       395 ~~~~l~~---l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~----~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      ...+++.   +..+..+.+..+|.+++..++.+++.-|   .++|.+.+.    | +.-.++|+++.|-.+.-..+.   
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~---  412 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYVARACRSELR---  412 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHHHHHHHHHHH---
Confidence            5555544   4557789999999999999999988765   344444333    3 333568999887654433333   


Q ss_pred             HHhChHHHhhhhHHHHHhhccCCchhHHHHHH--HHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTIL--RAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       465 ~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~--~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                       ..++....+.....+-+.+ |.+.. |....  .++.++...+. + ..-.......-.++...++||.++..--+...
T Consensus       413 -~c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~v  487 (533)
T KOG2032|consen  413 -TCYPNLVRKELYHLFQESL-DTDMA-RFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSV  487 (533)
T ss_pred             -hcCchhHHHHHHHHHhhhh-HHhHH-HHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHH
Confidence             3333322222222221111 21111 11111  11112221111 1 11122233333456667799999988888777


Q ss_pred             hhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          543 PIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       543 ~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .++.++    ....++...+..+..|+-++|+..|.+|++.+.
T Consensus       488 d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  488 DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            666554    234567778888999999999999999999874

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=9.3e-06  Score=80.09  Aligned_cols=226  Identities=16%  Similarity=0.083  Sum_probs=109.6

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc-CCCChHHHHHHHHHHHHhcCC
Q 007842           96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY-PSAPDILKTELRSIYTQLCQD  174 (587)
Q Consensus        96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~~~l~~l~~d  174 (587)
                      ..+++.||..++-.|+-.+..-...    .+...+++.+..+.-..-.+|.-.+|.++ ...+++..++++.+-.   +.
T Consensus       424 ~~~~e~v~hG~cLGlGLa~mGSa~~----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~---ET  496 (929)
T KOG2062|consen  424 TAENEVVRHGACLGLGLAGMGSANE----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQ---ET  496 (929)
T ss_pred             hccchhhhhhhhhhccchhcccccH----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhh---hh
Confidence            3456777777776666554433322    23444444444432221122222233222 2232333222222211   12


Q ss_pred             CChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCc
Q 007842          175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS  254 (587)
Q Consensus       175 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  254 (587)
                      .+..+.+...-.+.-++-.-     .+..-+++.+++.|.++..|..+...+..-  .++.. ....+-.++.-..+|.+
T Consensus       497 QHeki~RGl~vGiaL~~ygr-----qe~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~GTg-nnkair~lLh~aVsD~n  568 (929)
T KOG2062|consen  497 QHEKIIRGLAVGIALVVYGR-----QEDADPLIKELLRDKDPILRYGGMYTLALA--YVGTG-NNKAIRRLLHVAVSDVN  568 (929)
T ss_pred             hHHHHHHHHHHhHHHHHhhh-----hhhhHHHHHHHhcCCchhhhhhhHHHHHHH--HhccC-chhhHHHhhcccccccc
Confidence            23344444443333322211     123445666667777777777665554321  11111 12223333333456777


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcH
Q 007842          255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       255 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~  333 (587)
                      ..||++|+.+||-++..      ....+|..++++. +.++.||.+++-+|+-.+...|...    .+..+..+..|+..
T Consensus       569 DDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~  638 (929)
T KOG2062|consen  569 DDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVD  638 (929)
T ss_pred             hHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHH
Confidence            77777777777765532      2234444444443 4457777777777777666666532    34555556667777


Q ss_pred             HHHHHHHHHHHcc
Q 007842          334 HVRSALASVIMGM  346 (587)
Q Consensus       334 ~vr~~a~~~l~~l  346 (587)
                      -||..|+-++.-+
T Consensus       639 fVRQgAlIa~amI  651 (929)
T KOG2062|consen  639 FVRQGALIALAMI  651 (929)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766655544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=9.5e-06  Score=80.48  Aligned_cols=232  Identities=15%  Similarity=0.222  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-CCC
Q 007842          293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF  371 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~  371 (587)
                      ++.-+..-.+.|..+...++...+..+++|.+...+.+.  ...-...-.+-.+++......+...++|.+...++ ...
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~  363 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP  363 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence            445555667778888888888888899999998776432  22222223333455555666677788888888877 556


Q ss_pred             hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh-cCCCch
Q 007842          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVY  450 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~  450 (587)
                      .++....++.+..+.+....+.+.+.++|.+...+++.+..+...+++.++.+++.+......+.++|.+.++ +...+.
T Consensus       364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~  443 (700)
T KOG2137|consen  364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL  443 (700)
T ss_pred             ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence            7788888899999999999999999999999999999999999999999999999998777888899988765 567889


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCCCC
Q 007842          451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRV  527 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~  527 (587)
                      .||..++.+++.+++.+..-...+.+.|.+..+ +..++.+-...+.+...++-  ..|.+...+.++|.++.+...+.
T Consensus       444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            999999999999998776655566666666554 44556666666666666543  33445667888998888776554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.48  E-value=7.2e-05  Score=73.91  Aligned_cols=260  Identities=17%  Similarity=0.150  Sum_probs=146.2

Q ss_pred             CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhH
Q 007842          139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV  218 (587)
Q Consensus       139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v  218 (587)
                      ...+..|+..++.+++++ |+..+..+..+..+|+|++..||..+...|..++..  .+.+.+.+..+|.++++.+++..
T Consensus        36 ~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~E  112 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPVE  112 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHH
T ss_pred             HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHHH
Confidence            456677888888999988 567888999999999999999999999999999987  35778899999999999888777


Q ss_pred             HHHHHHHHHHHhhhcChhhhhhchHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhcC
Q 007842          219 RLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLLR  290 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--~d~~~~vR~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~~l~  290 (587)
                      +...-++|..+...-+..    .+..++.++.  ...+..+|..+++.|..-...++.+..      ...++..+.+.++
T Consensus       113 ~~~v~~sL~~ll~~d~k~----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~  188 (556)
T PF05918_consen  113 LDAVKNSLMSLLKQDPKG----TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ  188 (556)
T ss_dssp             HHHHHHHHHHHHHH-HHH----HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCcHH----HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence            777777777766543322    2333333333  234567999998888665555554332      2356777788888


Q ss_pred             CChHHHHHHHHHhHHHHHhh--hCHHHHHHhHhHHHHHhcc-----C-CcH----HHHHHHHHHHHccccccchhHHHHh
Q 007842          291 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSS-----D-SSQ----HVRSALASVIMGMAPLLGKDATIEQ  358 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~~~-----d-~~~----~vr~~a~~~l~~l~~~~~~~~~~~~  358 (587)
                      |-..+-=...+..|..+-..  .........+++.+.....     + .+.    ++...+-.++..+........+..+
T Consensus       189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y  268 (556)
T PF05918_consen  189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY  268 (556)
T ss_dssp             T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred             hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence            84322222222333322211  1112233556666654331     1 122    2333444455555544444444444


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~  406 (587)
                      +...++..+.+-.++.+...++.++.++...+... ...++|.+.+++
T Consensus       269 ~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  269 MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence            44444444555567888899999999999888654 345555555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.48  E-value=2.1e-06  Score=64.30  Aligned_cols=85  Identities=28%  Similarity=0.414  Sum_probs=57.3

Q ss_pred             HHHHHhc-cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHH
Q 007842          322 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (587)
Q Consensus       322 ~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  400 (587)
                      |.+.+.+ +|+++.+|..++.+++.+.        .+..+|.+..+++|+++.||..++.+++.+..        +..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            4555555 7778888888888877554        23557777777788888888888888877642        34566


Q ss_pred             HHHHHhcC-CChHHHHHHHHHHH
Q 007842          401 AIVELAED-RHWRVRLAIIEYIP  422 (587)
Q Consensus       401 ~l~~~~~~-~~~~vR~~~~~~l~  422 (587)
                      .+.+.+.+ +++.+|..++.+++
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            66666554 44556777766653

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.46  E-value=0.0011  Score=67.97  Aligned_cols=458  Identities=15%  Similarity=0.105  Sum_probs=235.5

Q ss_pred             ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhc------------------
Q 007842           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQM------------------  117 (587)
Q Consensus        56 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~------------------  117 (587)
                      ++|.-..+|..+...+.++....++.. ...++..+-+.-.|+...+++.+...+..-....                  
T Consensus       481 ClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~  559 (1529)
T KOG0413|consen  481 CLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQ  559 (1529)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhh
Confidence            677777888887776666554434322 2223332222233444566655554443321111                  


Q ss_pred             ---------ChhhHHhhHHHHHHHHhc-CCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHh
Q 007842          118 ---------RESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASN  186 (587)
Q Consensus       118 ---------~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~  186 (587)
                               +...+.+.++..|.+-.. ++...++..++..+.....+++.. .....+-+|..+|+|+--.||+.++.+
T Consensus       560 d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~S  639 (1529)
T KOG0413|consen  560 DFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADS  639 (1529)
T ss_pred             hcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHH
Confidence                     112345556666655555 667788999999888888888766 445558899999999999999999999


Q ss_pred             HHHHHHhhcc-chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh-hhc------------------Chhhhhhc-----
Q 007842          187 LGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG-KLL------------------EPQDCVAH-----  241 (587)
Q Consensus       187 l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~-~~~------------------~~~~~~~~-----  241 (587)
                      |+.+...-+- -......+-.+..+++|.+..|...|...+..+. ..+                  ....++..     
T Consensus       640 ltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl~~~~h~w  719 (1529)
T KOG0413|consen  640 LTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYLMSTLHDW  719 (1529)
T ss_pred             HHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987764211 1122333444555566665555555554332211 100                  00000000     


Q ss_pred             -----hHHHHHHh--------ccCCcHHH-------------------------HHHHHHHHHHHHHHhCC--Ccc----
Q 007842          242 -----ILPVIVNF--------SQDKSWRV-------------------------RYMVANQLYELCEAVGP--EPT----  277 (587)
Q Consensus       242 -----l~~~l~~~--------~~d~~~~v-------------------------R~~a~~~l~~~~~~~~~--~~~----  277 (587)
                           .-+...+-        ..|+.|-+                         .....+.++.+...++.  +..    
T Consensus       720 ~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~  799 (1529)
T KOG0413|consen  720 VREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDL  799 (1529)
T ss_pred             HHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHH
Confidence                 00000000        00111211                         11122344444333221  011    


Q ss_pred             ccchHHHHHHhcCCCh----HHHHHHHHHhHHHHHhhhCH--HHHH--------HhHhHHHHHhccCCcH-----HH-H-
Q 007842          278 RMDLVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNP--ELAI--------QHILPCVKELSSDSSQ-----HV-R-  336 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~--~~~~--------~~i~~~l~~~~~d~~~-----~v-r-  336 (587)
                      .+.+...+..+++.+.    .++-..+...++..+.+-.+  +...        ..+.+....+-....|     .. | 
T Consensus       800 vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~  879 (1529)
T KOG0413|consen  800 VDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERL  879 (1529)
T ss_pred             HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHH
Confidence            2234445554444332    33334444455544432111  0110        1122222211111111     11 1 


Q ss_pred             --HHHHHHHHccccccchhHHHHhHHHHHHHhhc----C-------------------------CChHHHHHHHHhhhhh
Q 007842          337 --SALASVIMGMAPLLGKDATIEQLLPIFLSLLK----D-------------------------EFPDVRLNIISKLDQV  385 (587)
Q Consensus       337 --~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d-------------------------~~~~vr~~a~~~l~~l  385 (587)
                        ....-+++.....++.. -..+.++++.+...    |                         -.+-+|..+.-+++++
T Consensus       880 l~~~y~v~~~~~~ql~P~a-r~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakm  958 (1529)
T KOG0413|consen  880 LCTAYNVAFSYSPQLVPHA-RLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKM  958 (1529)
T ss_pred             HHHHhhccccccceeccch-hccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHH
Confidence              11111222333333311 12222333322211    1                         1245677777777777


Q ss_pred             hhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842          386 NQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (587)
Q Consensus       386 ~~~~~~~~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      +-..  +.+.+.++|.+.+-++ ...-.+|..++-+++.++-....  ..+..+|.+-..|.|++.-||..++..|..+.
T Consensus       959 cLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen  959 CLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred             Hhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            6443  3344668888876443 45567888777777776654421  23557888999999999999999999999998


Q ss_pred             HHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHH
Q 007842          465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (587)
Q Consensus       465 ~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~  520 (587)
                      +.-=.. +...++=.++-.+-|.++.+|.-|=.+++.+.+.-.+..+...+...+.
T Consensus      1035 q~~~vK-w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1035 QFGIVK-WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred             hhhhhh-cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            732122 2344444444456788999999999999999876555444444444433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.45  E-value=3e-05  Score=69.74  Aligned_cols=189  Identities=10%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             HHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHH--HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHh
Q 007842          282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (587)
Q Consensus       282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  358 (587)
                      +..+..+++ ..++.+++.+..+++..+..-....+.  -..++.+..++.++++.+|..|..++.+++.........+.
T Consensus        14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~   93 (254)
T PF04826_consen   14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM   93 (254)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence            455566665 456888888888888866543222221  24678888889999999999999998888766544333334


Q ss_pred             HHHHHHHhh-cC-CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh--ChhhhH
Q 007842          359 LLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFD  434 (587)
Q Consensus       359 l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~--~~~~~~  434 (587)
                      .++.+.+.. .+ .+.+++.++++.|..+.-.-.........+|.+..++...+..+|..+++.+..++..-  ..+.+.
T Consensus        94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~  173 (254)
T PF04826_consen   94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS  173 (254)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence            444444432 22 36788888888888886544334444556788888888888888888888888877532  233333


Q ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChH
Q 007842          435 DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       435 ~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      ....+.++.++..+ ..++...++..+.++...++.+
T Consensus       174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            44455566666554 6777888888888887766543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.44  E-value=1.1e-06  Score=70.38  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=70.7

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---  548 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---  548 (587)
                      .+++.+.+++.++++.+|..++.+++.++.....   ......++|.+.++++|+++.+|..++.+|++++...+..   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            3566666777777777777777777777654211   1123367777777777777777777777777776543221   


Q ss_pred             HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          549 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .....+++.+.+++.+.+.++|..+..+|..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            223446777777777777778877777777665

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.44  E-value=2.2e-05  Score=70.54  Aligned_cols=180  Identities=14%  Similarity=0.122  Sum_probs=123.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCC-Cc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc
Q 007842          252 DKSWRVRYMVANQLYELCEAVGP-EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~~~~~~~~-~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~  329 (587)
                      ..++.++..+.-+++..+..-.. +. ..-..++.+..++.++++.+|..|+.++..++.........+..++.+.+.+.
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~  103 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV  103 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence            45688888888888876542111 11 12257888999999999999999999999887765544333444555544322


Q ss_pred             --CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--hhhHHhhHHHHHHHH
Q 007842          330 --DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVEL  405 (587)
Q Consensus       330 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~  405 (587)
                        ..+..++.++.+.|..+.............+|.+..++..++..+|..+++.|..++..-.  .+-+....++.+..+
T Consensus       104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence              2366889999999999975544444455678888999999999999999999998875432  333344556667776


Q ss_pred             hcCC-ChHHHHHHHHHHHHHHHhhChh
Q 007842          406 AEDR-HWRVRLAIIEYIPLLASQLGVG  431 (587)
Q Consensus       406 ~~~~-~~~vR~~~~~~l~~l~~~~~~~  431 (587)
                      +... +..+-..++..++.+.+.+.++
T Consensus       184 f~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  184 FNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            6654 5566666777777776666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.00031  Score=62.94  Aligned_cols=318  Identities=13%  Similarity=0.128  Sum_probs=184.9

Q ss_pred             HHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChH
Q 007842          222 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEA  294 (587)
Q Consensus       222 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-------~~~~l~~~l~~~l~d~~~  294 (587)
                      ++.++..+.....+....+.+.|.+...+..++..|+..+++.++.+.+......       ....+++.+..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            5666666666555555667788888888888888888888888888887655321       123578888888999999


Q ss_pred             HHHHHHHHhHHHHHhhhCH-H-HHHHhHhHHH--HHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhh
Q 007842          295 EVRIAAAGKVTKFCRILNP-E-LAIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLL  367 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~l--~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l  367 (587)
                      +|-++|.+.+..++..-.. + .|...+...+  .++....+.-+|.-..+.+..+.+..+.   +....-++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            9999999999988764211 0 1111111111  1222233445666666666666554432   222344566666556


Q ss_pred             cC-CChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhc----CCChHHHHHHHHHHHHHHHhhChhhhH------
Q 007842          368 KD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGVGFFD------  434 (587)
Q Consensus       368 ~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~----~~~~~vR~~~~~~l~~l~~~~~~~~~~------  434 (587)
                      +- ++.-|+...++-...+...-...++  .+.++..+.+++.    |+....|..     ..+.+.+|++..+      
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral-----mgfgkffgkeaimdvseea  297 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL-----MGFGKFFGKEAIMDVSEEA  297 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH-----HHHHHHhcchHHhhcCHHH
Confidence            54 5567777777777776644322221  2455666666542    333344332     2223333332221      


Q ss_pred             --HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC-hHHHhhh---hHHHHHhhccCCc-hhHHHHHHHHHHHhhc
Q 007842          435 --DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQH---ITPQVLEMINNPH-YLYRMTILRAISLLAP  504 (587)
Q Consensus       435 --~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~---l~~~l~~~l~d~~-~~~R~~a~~~l~~l~~  504 (587)
                        +.   .+.-.+..+..+++....+|+.++|.+.+... .+...+.   -..+++.-..|.+ ..-..+++.++..++.
T Consensus       298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence              11   12223445567888899999999999876543 3322222   2223333333433 3456677888887764


Q ss_pred             ccC--h-------H--HHHhh------------HHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          505 VMG--S-------E--ITCSR------------LLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       505 ~~~--~-------~--~~~~~------------il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ...  +       .  .....            =+..+...++.|.+++|.++.+++..+...
T Consensus       378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence            321  1       1  01111            123455567889999999999999998754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.41  E-value=3.3e-05  Score=66.20  Aligned_cols=92  Identities=16%  Similarity=0.015  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchh
Q 007842          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  490 (587)
Q Consensus       411 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  490 (587)
                      +.+|..++.+++.++...+.  ..+...|.+...+.|+++.||..|+.++..+... +.-...+.++..+...+.|+++.
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            44555555555555544331  2333455555556666666666666666555542 11112233444444555666666


Q ss_pred             HHHHHHHHHHHhhcc
Q 007842          491 YRMTILRAISLLAPV  505 (587)
Q Consensus       491 ~R~~a~~~l~~l~~~  505 (587)
                      +|..|..++..+...
T Consensus        79 Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   79 IRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            666666666665554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.39  E-value=4.6e-05  Score=65.36  Aligned_cols=109  Identities=21%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 007842          216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE  295 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~  295 (587)
                      +.+|..++.+++.++-..+.  ..+...|.+...+.|+++.||+.|+..+..+... +.-.....++..+..++.|++++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            56777777777777766653  3455677777788888888888888888777653 11112234556667777888888


Q ss_pred             HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHh
Q 007842          296 VRIAAAGKVTKFCRILNPELAIQHILPCVKEL  327 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  327 (587)
                      ||..|...+..+....++..+...+.+.+..+
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l  110 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL  110 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            88888888888877655554434444444333

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00039  Score=65.99  Aligned_cols=249  Identities=16%  Similarity=0.109  Sum_probs=136.2

Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchH
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~  282 (587)
                      .+..-..|++..+|..|+.+|+..+..++++   .....+..++..+.++.+..|...++.++..+.+..........++
T Consensus       262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l  341 (533)
T KOG2032|consen  262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL  341 (533)
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence            3334456777788999999999988887763   2233344455556666778888888888888776655433333333


Q ss_pred             H---HHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHH---HhccCCcHHHHHHHHHHHHccccccchh
Q 007842          283 P---AYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVK---ELSSDSSQHVRSALASVIMGMAPLLGKD  353 (587)
Q Consensus       283 ~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~---~~~~d~~~~vr~~a~~~l~~l~~~~~~~  353 (587)
                      +   -+..+.+|+++.+|.++...++.++...|.   +.|.+.+...+.   -.++|+++.+-.++-..+......++.+
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rk  421 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRK  421 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHH
Confidence            3   345567888899999999998888876653   233333332322   3357888888777666665555444433


Q ss_pred             HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh---chhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHhhC
Q 007842          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~~~~~~~-~vR~~~~~~l~~l~~~~~  429 (587)
                      ..    -..+.+.+ |.... |-.+...  ..+..+   -++. .........-+++ ..| .+|.++...-+.+...+.
T Consensus       422 e~----~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~-l~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  422 EL----YHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDI-LMLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             HH----HHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHH-HHHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhH
Confidence            21    22222222 22111 2111110  001111   0010 0111111111223 344 677776665555544443


Q ss_pred             hhh----hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842          430 VGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (587)
Q Consensus       430 ~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      +..    ....+...+..+..|+-++|+..|..+++.+.
T Consensus       492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            222    22334555556667777777777777776654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.38  E-value=3.1e-06  Score=67.81  Aligned_cols=106  Identities=16%  Similarity=0.074  Sum_probs=83.6

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--H-
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I-  510 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--~-  510 (587)
                      +++.+...+.+.++.+|..++.+++.++...   ...+....++|.+.+++.++++.+|..++.++++++...+..  . 
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            5677777888888999999999999988642   222334578999999999999999999999999998754321  1 


Q ss_pred             HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       511 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                      ....+++.+.+.+++++..+|..++.++.+++
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            23457899999999999999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0066  Score=67.28  Aligned_cols=285  Identities=16%  Similarity=0.143  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc-CCCCcchhhHHhh---------hHhhcC-----CCCh-HHHHHH
Q 007842          101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGL---------FHIAYP-----SAPD-ILKTEL  164 (587)
Q Consensus       101 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~---------l~~~~~-----~~~~-~~~~~l  164 (587)
                      .+-+.|+.-++.++.+.+++.- ..++..+..... ....+.+.....+         +..+..     .+.+ .++..-
T Consensus       799 s~Idta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~  877 (2067)
T KOG1822|consen  799 SLIDTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSA  877 (2067)
T ss_pred             HHHHHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHH
Confidence            5778888888888888877643 333333333322 2222111111111         111111     2233 366777


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH-HHHHhhhCCchhHHHHHHHHHHHHhhhcCh---hhhhh
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS-IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVA  240 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~  240 (587)
                      +.++...+..++|..|-++.++++.++...+...+...+.. .+.++.+-.++..|..-.-+++.+-+..+.   .....
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~  957 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN  957 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence            77888888899999999999999999999887665555444 455555556666677777777777776554   33444


Q ss_pred             chHHHHHHhccCCcH-HHHHHHHHHHHHHHHHhCCCccccc---hHHHHHH-hcCCC--hHHHHHHHHHhHH------HH
Q 007842          241 HILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPTRMD---LVPAYVR-LLRDN--EAEVRIAAAGKVT------KF  307 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~-~l~d~--~~~vr~~a~~~l~------~l  307 (587)
                      ..+..+..+.+|++. .|+..++.++..+....++.. ...   .+..... ++.++  ..+++...-+.+.      .+
T Consensus       958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen  958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred             cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHH
Confidence            455678888888765 999999999988876655432 111   1222222 33443  3556555555554      56


Q ss_pred             HhhhCHHH-----------HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHH
Q 007842          308 CRILNPEL-----------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL  376 (587)
Q Consensus       308 ~~~~~~~~-----------~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  376 (587)
                      ....|++.           +....+-...-++..+++-+..++++++.++.-.-++....+.+++.+..++....--.|.
T Consensus      1037 ittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~ 1116 (2067)
T KOG1822|consen 1037 ITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRR 1116 (2067)
T ss_pred             HHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhh
Confidence            65555431           0011111112233456788999999998888766666666788899999888887767777


Q ss_pred             HHHHhhhhhhh
Q 007842          377 NIISKLDQVNQ  387 (587)
Q Consensus       377 ~a~~~l~~l~~  387 (587)
                      ..+.++..+..
T Consensus      1117 ~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1117 ASFSCLRQLVQ 1127 (2067)
T ss_pred             hHHhhhhHHhH
Confidence            77777776654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=0.00025  Score=70.15  Aligned_cols=161  Identities=19%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842          285 YVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  362 (587)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  362 (587)
                      +++....++..||..++..+..+....+  ++...+.+...+...+.|..+.||..|..+|+.+-..-+.+.+  .+...
T Consensus        90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~  167 (892)
T KOG2025|consen   90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNL  167 (892)
T ss_pred             HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHH
Confidence            3333444455555555555555444211  1223344444444445555555555555555554422111111  11222


Q ss_pred             HHHhh-cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH-HHHHHhhChhhhHHHHHHH
Q 007842          363 FLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQLGVGFFDDKLGAL  440 (587)
Q Consensus       363 l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l-~~l~~~~~~~~~~~~l~~~  440 (587)
                      +..++ +|++++||.+++..+..=          ..-+|.+.+...|-+..+|..+.+-+ ..+ . +... -.+.-+-+
T Consensus       168 l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~l-si~krv~L  234 (892)
T KOG2025|consen  168 LKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRSL-SIDKRVLL  234 (892)
T ss_pred             HHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhhh-hHHHHHHH
Confidence            22222 345555555555544321          22344455555555555554443322 111 0 0000 01123344


Q ss_pred             HHHhcCCCchHHHHHHHHHH
Q 007842          441 CMQWLQDKVYSIRDAAANNL  460 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l  460 (587)
                      +.+.+.|.+..||.++...+
T Consensus       235 lewgLnDRe~sVk~A~~d~i  254 (892)
T KOG2025|consen  235 LEWGLNDREFSVKGALVDAI  254 (892)
T ss_pred             HHHhhhhhhhHHHHHHHHHH
Confidence            44555555555555555443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=0.00026  Score=69.97  Aligned_cols=206  Identities=15%  Similarity=0.081  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      +....++..+......++-.||..+++.+..+....+.  +.+.+.+..-+..-+.|..+.||..|+.+|..+-..-.++
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            36777788888888899999999999999999885432  4455666666667778999999999999998876422222


Q ss_pred             hhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh-HHHHHhhhCHH
Q 007842          237 DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK-VTKFCRILNPE  314 (587)
Q Consensus       237 ~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~  314 (587)
                        .-.+..++..++ +|++++||+++...+..          .+.-+|.++....|-+..+|+.+-.. +..+ ..... 
T Consensus       161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~l-  226 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSL-  226 (892)
T ss_pred             --cccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhh-
Confidence              223455555544 58999999999887642          34567888888888877777665443 3333 21111 


Q ss_pred             HHHHhHhHHHHHhccCCcHHHHHHHHHHHHc-cccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          315 LAIQHILPCVKELSSDSSQHVRSALASVIMG-MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      . ..+-+..+...+.|.+..||.++..++-. +....     ...++..+..+=-+.+.+|+..+++++-.
T Consensus       227 s-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  227 S-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence            1 12344556677788888888888776532 11111     01222333333233344666666666555

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00011  Score=74.17  Aligned_cols=178  Identities=20%  Similarity=0.174  Sum_probs=128.2

Q ss_pred             HHhccCCcHHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHH
Q 007842          325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (587)
Q Consensus       325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  402 (587)
                      ...+.|+...+|..+...+..+.+...+  -...+.++.+....++|.++.|-.++++.+..++..+.     +.++|.+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL  807 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDL  807 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHH
Confidence            3445677778888888888888764422  22456788899999999999999999998888887754     4567776


Q ss_pred             HHHhcC----CChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---hHHHh
Q 007842          403 VELAED----RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM  473 (587)
Q Consensus       403 ~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~  473 (587)
                      .+...+    ...+.|..+-+++..+++..|.=.  +...++..++....|++..-|..++..+|.+++...   .+++.
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~  887 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH  887 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence            663321    224556666688888888877432  345677788888899998999999999999998553   34443


Q ss_pred             hhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccCh
Q 007842          474 QHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       474 ~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      + ....+.. .-.|....+|.+|+..+..+....|.
T Consensus       888 e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  888 E-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             H-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            3 3333333 34577888999999999998887774

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.30  E-value=0.00025  Score=61.64  Aligned_cols=191  Identities=19%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             HHHHHHHhhhCC--chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHH--hCCC---
Q 007842          203 IMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA--VGPE---  275 (587)
Q Consensus       203 l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~--~~~~---  275 (587)
                      -+|.+...+.|+  .+.||..|.++|++++.        +...+++.+..+|+-..||..+..++..+-..  .+..   
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~  139 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANS  139 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccccc
Confidence            345555555444  46777777777777652        34566666666777777777666666554321  1110   


Q ss_pred             -------cccc-c--hHHHHHHhcCCCh-HH-HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHH
Q 007842          276 -------PTRM-D--LVPAYVRLLRDNE-AE-VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVI  343 (587)
Q Consensus       276 -------~~~~-~--l~~~l~~~l~d~~-~~-vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l  343 (587)
                             ..+. .  -+.-+...+.|.+ +. -|..++..|..++    .    +..+..+...+.+.+.-.|..++..+
T Consensus       140 ~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----~----EeaI~al~~~l~~~SalfrhEvAfVf  211 (289)
T KOG0567|consen  140 SPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----T----EEAINALIDGLADDSALFRHEVAFVF  211 (289)
T ss_pred             CccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----c----HHHHHHHHHhcccchHHHHHHHHHHH
Confidence                   0000 0  1222222222322 22 2333333333322    1    22245556666666777888888887


Q ss_pred             HccccccchhHHHHhHHHHHHHhhcC--CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842          344 MGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       344 ~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l  421 (587)
                      +++.+        +.-+|.+.+.|.|  +++-||-.++.+|+.++.        +..++.+.++++|+..-+|..+.-++
T Consensus       212 GQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~val  275 (289)
T KOG0567|consen  212 GQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVAL  275 (289)
T ss_pred             hhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            77753        2345666666554  356788888888877765        45677777778888888887777666


Q ss_pred             HHHH
Q 007842          422 PLLA  425 (587)
Q Consensus       422 ~~l~  425 (587)
                      ...-
T Consensus       276 dm~e  279 (289)
T KOG0567|consen  276 DMLE  279 (289)
T ss_pred             HHHH
Confidence            6543

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.29  E-value=0.00063  Score=68.68  Aligned_cols=407  Identities=12%  Similarity=0.076  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChhh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD  237 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                      ..+.+++.+..-+.+++..||..+.+.+.++-..+.. ..+.=-+-.++.++.+.+ ...||.-++--+..=.+.++.++
T Consensus        20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e   99 (501)
T PF13001_consen   20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEE   99 (501)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHH
Confidence            3344555555556677899999999999999998876 333333445555555555 57888887766665556666553


Q ss_pred             hhhchHHHHHHhccCCc---HHHHHHHHHHHHHHHHHhCCCccccc-----hHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842          238 CVAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGPEPTRMD-----LVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~---~~vR~~a~~~l~~~~~~~~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                       ...++|.+.+.++...   .......+..+..+++.......+..     .-+.-...+.|.  ........-...+..
T Consensus       100 -~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~  176 (501)
T PF13001_consen  100 -RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLL  176 (501)
T ss_pred             -HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhccccc
Confidence             4567777777665321   12222233333333333221110000     000000011110  000000000000000


Q ss_pred             hh--C---HHHHHHhHhHHHH-----Hhcc------C--CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC
Q 007842          310 IL--N---PELAIQHILPCVK-----ELSS------D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       310 ~~--~---~~~~~~~i~~~l~-----~~~~------d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  371 (587)
                      ..  .   .......-.|.+.     ....      +  .-.++|..+++.+..-.  ++.    +..++.++-.-.|.+
T Consensus       177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~d----~~~~~~~liAsad~~  250 (501)
T PF13001_consen  177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FPD----EERFPPLLIASADSN  250 (501)
T ss_pred             cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CCc----HhHHhheeeEEeCCc
Confidence            00  0   0000000001110     0000      1  11245555555543322  111    123344444457778


Q ss_pred             hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHH--HHhc-----CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh
Q 007842          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAE-----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~--~~~~-----~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  444 (587)
                      .+|...+-..|.++...+....+.+.++..+.  ..-.     --++.+|..++..+..   ........+.++.++...
T Consensus       251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~  327 (501)
T PF13001_consen  251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG  327 (501)
T ss_pred             chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc
Confidence            88999999999888877666555555555444  1111     1256677766665544   322222234566677777


Q ss_pred             cCCC--chHHHHHHHHHH---HHHHHHhChHHH---hhhhHHHHHhhcc--------CCchhHHHHHHHHHHHhhcccCh
Q 007842          445 LQDK--VYSIRDAAANNL---KRLAEEFGPEWA---MQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       445 l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~l~~~l~~~l~--------d~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      +.+.  +..+|..++..+   .......+....   .+.+...+...+.        ..+...|..+.++||.++.....
T Consensus       328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~  407 (501)
T PF13001_consen  328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS  407 (501)
T ss_pred             ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence            7766  778899999998   777776665432   2333333333332        23578999999999999986654


Q ss_pred             HHH-HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH-----HhhHHH-HHHHhcCCCCccHHHHHHHHHH
Q 007842          509 EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRP-CLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       509 ~~~-~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~-~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      -+. .-.++..+.+.+.++.+++|.++-++|..+...+....-     ...... .+.....+....+|+.|.+=..
T Consensus       408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an  484 (501)
T PF13001_consen  408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN  484 (501)
T ss_pred             cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            321 134566777777899999999999999999987754211     112222 2222445666778887776433

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.28  E-value=0.0011  Score=65.80  Aligned_cols=270  Identities=17%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHH
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  245 (587)
                      ..++.... .+..+++.+++.+..+.+.+  +...+..+..+..++.|++..||..|+..|..++..-+  ...+.+..+
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDv  100 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADV  100 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHH
Confidence            33444444 35899999999999999987  45667788888899999999999999999998876533  256788999


Q ss_pred             HHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHHHHHHHHHhHHHHHhhhCH------HHHH
Q 007842          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNP------ELAI  317 (587)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~  317 (587)
                      |.++++.+++..+..+-++|..+...-+    ...+-..+....  ...+..+|.-+++.+..-...++.      +...
T Consensus       101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e  176 (556)
T PF05918_consen  101 LVQLLQTDDPVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME  176 (556)
T ss_dssp             HHHHTT---HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence            9999998888777777777777665311    112333333333  245678999988877654443332      2344


Q ss_pred             HhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhc------CCChHHHHHHHHh----hhhh
Q 007842          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK------DEFPDVRLNIISK----LDQV  385 (587)
Q Consensus       318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~----l~~l  385 (587)
                      ..+...+.+.+.|-...-=..+...|..+-.+-+  ...-...+++++.....      -.+++.-...+.+    +.-+
T Consensus       177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f  256 (556)
T PF05918_consen  177 EFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF  256 (556)
T ss_dssp             HHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence            5567777888888544333333444444433111  12223456666664331      1223333333333    3333


Q ss_pred             hhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842          386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       386 ~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      ........+...+...+...+.+-....|..+++.+..++...+... ...++|.++..|
T Consensus       257 s~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  257 SRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence            33333333333322222222233344667778888888888777544 445556665555

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.0029  Score=56.93  Aligned_cols=345  Identities=17%  Similarity=0.195  Sum_probs=167.3

Q ss_pred             HHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh-------hhhhchHHHHHHhccCCcH
Q 007842          183 AASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-------DCVAHILPVIVNFSQDKSW  255 (587)
Q Consensus       183 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~~~~d~~~  255 (587)
                      +...|..+.+.-.+....+.++|.+...+..++..|+..+++.++.+.+.+...       .....+.+.+..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            444455555544444455666666666666666667777776666666655421       1133466666666666777


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC----------ChHHHHHHHHHhHHHHHhhhCHH----HHHHhHh
Q 007842          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD----------NEAEVRIAAAGKVTKFCRILNPE----LAIQHIL  321 (587)
Q Consensus       256 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~  321 (587)
                      .|-.+|.+.+..++..-      ..+--+|..-+.|          -+.-+|......+-.+... .++    -....++
T Consensus       143 eVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLl  215 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLL  215 (524)
T ss_pred             HHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHH
Confidence            77777777777665421      1111111111111          1222333333333333221 111    1112234


Q ss_pred             HHHHH-hccCCcHHHHHHHHHHHHccccccchhHH--HHhHHHHHHHhhc--CCChHHHHHHHHhhhhhhhhhchhhHH-
Q 007842          322 PCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLS-  395 (587)
Q Consensus       322 ~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~-  395 (587)
                      ..+.. +-..++.-|+..+++....++..-....+  .+-++..+.+.+.  |.+|.-+..+   +..+.+.+|++.+. 
T Consensus       216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra---lmgfgkffgkeaimd  292 (524)
T KOG4413|consen  216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA---LMGFGKFFGKEAIMD  292 (524)
T ss_pred             HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH---HHHHHHHhcchHHhh
Confidence            44433 33335666777777776666543321111  2223444444433  2233222222   23333333332211 


Q ss_pred             -------h---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-ChhhhHH----HHHHHHHHhcCCCchHHHHHHHHHH
Q 007842          396 -------Q---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD----KLGALCMQWLQDKVYSIRDAAANNL  460 (587)
Q Consensus       396 -------~---~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l  460 (587)
                             +   ..+.-..+.++..++....+++.+++.+.... |.+...+    ..-..+......+...-+.+++++|
T Consensus       293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaL  372 (524)
T KOG4413|consen  293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHAL  372 (524)
T ss_pred             cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHH
Confidence                   1   11222234556677888888888888876543 2222211    1112222233333334456778888


Q ss_pred             HHHHHHhC--hH--------------HHh-----hhh--HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH-
Q 007842          461 KRLAEEFG--PE--------------WAM-----QHI--TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL-  516 (587)
Q Consensus       461 ~~l~~~~~--~~--------------~~~-----~~l--~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il-  516 (587)
                      ..+...+.  ++              ||.     ..+  +..+...++.|.+.+|.++++.+..++..   .|....++ 
T Consensus       373 aaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq---PWalkeifa  449 (524)
T KOG4413|consen  373 AAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ---PWALKEIFA  449 (524)
T ss_pred             HHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC---cHHHHHHhc
Confidence            87765321  11              111     111  22334456778899999999999998753   23322222 


Q ss_pred             -HHHHhhcCCCCh-------hHHHHHHHHHHH
Q 007842          517 -PVVINASKDRVP-------NIKFNVAKVLQS  540 (587)
Q Consensus       517 -~~l~~~l~d~~~-------~vR~~~~~~l~~  540 (587)
                       |.++....|.+.       ..|..+++++.+
T Consensus       450 keefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  450 KEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             CccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence             344444455433       456666666654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.0024  Score=64.79  Aligned_cols=188  Identities=16%  Similarity=0.129  Sum_probs=129.6

Q ss_pred             hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh----HHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChH--
Q 007842           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--  159 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~--  159 (587)
                      +-.+|+.+-...|+.....|+.-|.++.....++.    -.+.++|.+..+.+++ ++.....||..+.++++.+++.  
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            44455555555588777776666666543333322    2567899999999887 7788888999999998888764  


Q ss_pred             --HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh
Q 007842          160 --LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (587)
Q Consensus       160 --~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                        .....+|.|. .+..-.--.|.+.+++++..+....+......--+..+..+++--.-.+++.|+.+...++..+.++
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd  328 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD  328 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence              3345777766 4555566789999999999998876543332222222222222223356777888888888887764


Q ss_pred             h--hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC
Q 007842          237 D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP  274 (587)
Q Consensus       237 ~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~  274 (587)
                      .  +.-+.+|++..+++..+.++-..++-++..++..+..
T Consensus       329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h  368 (1051)
T KOG0168|consen  329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH  368 (1051)
T ss_pred             cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence            2  4556799999999988888888889999998887654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.25  E-value=0.0066  Score=60.36  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc-cCCchhHHHHHHHHHHHhhcccChH
Q 007842          435 DKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSE  509 (587)
Q Consensus       435 ~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~  509 (587)
                      ..+.|+......+    .++.++.+|.-+|..+.- +..+ |...-+|.+...+ +.|++.+|..|+-.+|.+.-.+.. 
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-  967 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-  967 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh-
Confidence            4455666655555    788899999988888764 2333 3345578877765 489999999999999998876554 


Q ss_pred             HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       510 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                       +.++....+.+.+.|.+..||.+++.++..++-.-.  .-...-++.+..++.|+|..+...|..-+-++++
T Consensus       968 -~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 -TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             -hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence             457788899999999999999999999988765321  1112336777888999999999988887777664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.0015  Score=66.27  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=122.5

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChh-
Q 007842          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-  236 (587)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-  236 (587)
                      .+-.+|..+-...++..+..++.-+......-.++    .-.+.+.|.+..+++++ +.++-..|+.++..+++.+|+. 
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            34444444444445666555544444433332222    23466888899998887 5788889999999999998873 


Q ss_pred             --hhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          237 --DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       237 --~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        ......+|.+..-+ .=.--.|-+.+++++..+...-+.......-+-..+.+++=-.-.+++.|+......+..+..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s  327 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS  327 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              12344677665533 334456888888888888775443322222233333333333456777888888888888776


Q ss_pred             H--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842          314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       314 ~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  350 (587)
                      +  .+.-+.+|.+..+++..+.++-..++-++..++..+
T Consensus       328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            5  345678899999999888888888888888887766

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.23  E-value=0.0017  Score=65.55  Aligned_cols=406  Identities=13%  Similarity=0.070  Sum_probs=212.2

Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-hhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHHHHHH
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELR  165 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~  165 (587)
                      .|+|.++ .+++..||+..++.+..+-+.+.. ..+.=-+..++..+.+.+ ...+|..+.--+...+++++.+.+..++
T Consensus        26 ~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~ll  104 (501)
T PF13001_consen   26 PPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRELL  104 (501)
T ss_pred             HHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence            3444444 466778888888888888776654 222222333444444444 4566777776667778888888888888


Q ss_pred             HHHHHhcCCCChH---HHHHHHHhHHHHHHhhccchh----hhHHHHHH-HHhhhCCchhHHHHHHHHHHHHh-------
Q 007842          166 SIYTQLCQDDMPM---VRRSAASNLGKFAATVEPAHL----KTDIMSIF-EDLTQDDQDSVRLLAVEGCAALG-------  230 (587)
Q Consensus       166 ~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l-~~l~~d~~~~vr~~a~~~l~~l~-------  230 (587)
                      |.+.+.+......   .....+..+..+++.......    .+.....- ...+.|....  .....-.....       
T Consensus       105 P~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~l~~~~~  182 (501)
T PF13001_consen  105 PSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDD--VFLAPWFSKFLLLQPNRA  182 (501)
T ss_pred             HHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHH--HHcchhhccccccccccc
Confidence            8888877643211   111222222222222211000    00000000 0000000000  00000000000       


Q ss_pred             hhcCh--hhhhhchHH-HHHHhccC--------CcHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHH
Q 007842          231 KLLEP--QDCVAHILP-VIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRI  298 (587)
Q Consensus       231 ~~~~~--~~~~~~l~~-~l~~~~~d--------~~~~vR~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~  298 (587)
                      ..++.  ....+.+.. -.......        .-.++|...++.+..       ... ....++.++-...|.+.+|..
T Consensus       183 ~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~s-------g~f~d~~~~~~~liAsad~~~~V~~  255 (501)
T PF13001_consen  183 YACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLAS-------GFFPDEERFPPLLIASADSNSSVSD  255 (501)
T ss_pred             cCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh-------cCCCcHhHHhheeeEEeCCcchHHH
Confidence            00000  000000000 01111110        112344444444432       222 225566666666888889998


Q ss_pred             HHHHhHHHHHhhhCHHHHHHhHhHHHH--Hhcc-----CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC-
Q 007842          299 AAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-  370 (587)
Q Consensus       299 ~a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-  370 (587)
                      .+-..|.++...++...+...++..+.  ....     -.++.+|......|.+-...   ....+.++.++...+.+. 
T Consensus       256 ~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A---a~~~~~~~~i~~~~l~~~~  332 (501)
T PF13001_consen  256 RAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA---ATSFPNILQIVFDGLYSDN  332 (501)
T ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---HhCCccHHHHHhccccCCc
Confidence            888888888777666666555555555  2111     13567777777666542111   111234455566666666 


Q ss_pred             -ChHHHHHHHHhh---hhhhhhhchhhHHhhHHHHHH----HHhc--------CCChHHHHHHHHHHHHHHHhhChhhh-
Q 007842          371 -FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLGVGFF-  433 (587)
Q Consensus       371 -~~~vr~~a~~~l---~~l~~~~~~~~~~~~~l~~l~----~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~-  433 (587)
                       +..+|..+++.+   .......+...+ ..+-|.+.    ..+.        ..+...|..+++++|.+++....-+. 
T Consensus       333 ~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~  411 (501)
T PF13001_consen  333 TNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK  411 (501)
T ss_pred             cccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccc
Confidence             567888888887   666665554432 22222222    2231        24567899999999999987643221 


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH-----hhhhHHHH-HhhccCCchhHHHHHHHHHHHhhcccC
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMG  507 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l-~~~l~d~~~~~R~~a~~~l~~l~~~~~  507 (587)
                      .-.++..++..+.++..++|.+.-++|+.+...+....-     ....+..+ .....+....+|.+|++....+.+.-.
T Consensus       412 d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  412 DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSD  491 (501)
T ss_pred             cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence            124667777788999999999999999999987754211     11112222 223345567799999998888876433

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.18  E-value=0.012  Score=60.45  Aligned_cols=500  Identities=13%  Similarity=0.118  Sum_probs=251.1

Q ss_pred             hhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcc--hhhHHHHHHHHHHHHHHhhcChhhHHhh
Q 007842           48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCVRDKAVESLCRIGSQMRESDLVDW  125 (587)
Q Consensus        48 ~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~  125 (587)
                      .++..+....+.+..+|..+...+..+-...   .    +...|.....+  ..-..|+.|.-.|.+..+..-....+..
T Consensus         5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~---~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f   77 (1005)
T KOG2274|consen    5 AIIELLSGSLSADQNVRSQAETQLKQLELTE---G----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF   77 (1005)
T ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhccccch---H----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence            4555666666777777777666665553211   1    22223333322  3445677777666665543321111100


Q ss_pred             HHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHH
Q 007842          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS  205 (587)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  205 (587)
                                               .-....+++.+..+.+.+.+++.+++..+|.+++.++..++..-- ++-++.++|
T Consensus        78 -------------------------r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~-Pd~WpElv~  131 (1005)
T KOG2274|consen   78 -------------------------RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDY-PDEWPELVP  131 (1005)
T ss_pred             -------------------------cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccC-chhhHHHHH
Confidence                                     000113345777888888888889999999999999998887653 455688899


Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh---hhchHHHH---HHhccCCcHHHHHHHHH--HHHHHHHH---hCC
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVI---VNFSQDKSWRVRYMVAN--QLYELCEA---VGP  274 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l---~~~~~d~~~~vR~~a~~--~l~~~~~~---~~~  274 (587)
                      .+.+++.+.+..--..|.++|..+.+....+..   .+...+.+   ..+....+...|..++.  .+......   .++
T Consensus       132 ~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e  211 (1005)
T KOG2274|consen  132 FILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEE  211 (1005)
T ss_pred             HHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHH
Confidence            999888887776677788888877765532211   11112222   22333344444444442  22222111   111


Q ss_pred             C------ccccchHHHHHHhc------CC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhH----HHHHhc-------
Q 007842          275 E------PTRMDLVPAYVRLL------RD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILP----CVKELS-------  328 (587)
Q Consensus       275 ~------~~~~~l~~~l~~~l------~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~----~l~~~~-------  328 (587)
                      .      .....+++.+...+      .+ .++..|...++++..+.+.++.-  .+....++    .+.+.+       
T Consensus       212 ~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~  291 (1005)
T KOG2274|consen  212 VWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRES  291 (1005)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhh
Confidence            0      00112233332222      12 34677877788777777655421  11111111    111110       


Q ss_pred             -----------cCCcHH---HHHHHHHHHHccccccchhHH-------HHhHHHHHH------------------HhhcC
Q 007842          329 -----------SDSSQH---VRSALASVIMGMAPLLGKDAT-------IEQLLPIFL------------------SLLKD  369 (587)
Q Consensus       329 -----------~d~~~~---vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~------------------~~l~d  369 (587)
                                 .|+++.   +....+..+.-+...+....+       ...+++.+.                  .+..|
T Consensus       292 V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~d  371 (1005)
T KOG2274|consen  292 VNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVAD  371 (1005)
T ss_pred             ccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhcc
Confidence                       111211   111111111111111100000       001111111                  11122


Q ss_pred             CC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHH----HHH------HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHH
Q 007842          370 EF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA----IVE------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (587)
Q Consensus       370 ~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~----l~~------~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  437 (587)
                      ++  ..+|-.+...+-.+...+|.+... .+...    +..      +.+...|....+.....+.+...-..+.....+
T Consensus       372 Ed~~~~~~~~~rd~~~~v~~~f~~~~i~-~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l  450 (1005)
T KOG2274|consen  372 EDDGYTARISVRDLLLEVITTFGNEGIN-PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIEL  450 (1005)
T ss_pred             CCCCchhhhhHHHHHHHHHHhccchhhh-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence            22  234444545555555555543221 11111    111      123345666666655555444221122222333


Q ss_pred             HHHHHHhc-CCCchHHHHHHHHHHHHHHHH--hChHHHhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842          438 GALCMQWL-QDKVYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (587)
Q Consensus       438 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      ...+.+.+ ....+..-..+.-+++.+...  ..+.. ...++..... ...|..+.+|..|+.++...++..--..+.+
T Consensus       451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p  529 (1005)
T KOG2274|consen  451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQP  529 (1005)
T ss_pred             HHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccch
Confidence            33334443 234455545677777766654  23332 2333333333 3456667799999998887774322223467


Q ss_pred             hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHH--hcCCCCccHHHHHHHHHHHHHH
Q 007842          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~--l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .++..+..+..+.+.++-...+++|+.+++.-+..  ...+.+.|....  +....||.|-..+...++.+.+
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q  602 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ  602 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            78888888888889999999999999988653332  234567776666  3445566887777777777665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.14  E-value=0.0019  Score=60.56  Aligned_cols=202  Identities=15%  Similarity=0.128  Sum_probs=133.2

Q ss_pred             HHhhcCCChHHHHHHHHhhhhhhhhh-chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhhHH
Q 007842          364 LSLLKDEFPDVRLNIISKLDQVNQVI-GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDD  435 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~  435 (587)
                      +..+.+.....|..++..+..+.... -.+   .....+++.+...++....+-+..++.+++.++-.+|    .+.+.+
T Consensus        49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~  128 (309)
T PF05004_consen   49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE  128 (309)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence            34445566778888877777665321 111   1234566677776766665667777788888877765    334556


Q ss_pred             HHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHhChHH-Hhh---hhHHHHHhh--cc-C---------CchhHHHHHHH
Q 007842          436 KLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLEM--IN-N---------PHYLYRMTILR  497 (587)
Q Consensus       436 ~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~---~l~~~l~~~--l~-d---------~~~~~R~~a~~  497 (587)
                      .+.|.|...+.|..  ..+|.+++.+|+.+.-..+.+. -..   ..+..++..  .+ +         ++..+..+|+.
T Consensus       129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~  208 (309)
T PF05004_consen  129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS  208 (309)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence            68888888887765  4577788888887765443321 112   122211111  11 1         23579999999


Q ss_pred             HHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH------HHHhhHHHHHHHhcCCC
Q 007842          498 AISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDP  565 (587)
Q Consensus       498 ~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~  565 (587)
                      +.+-+...++...   .....+|.+..++..++.+||.+|-++|..+.+.....      ...+.+...+.+|.+|.
T Consensus       209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            9999988777632   35668899999999999999999999999988765431      23456788888887765

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.13  E-value=0.015  Score=59.88  Aligned_cols=149  Identities=13%  Similarity=0.127  Sum_probs=117.3

Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh-
Q 007842          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-  469 (587)
Q Consensus       394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  469 (587)
                      +...+.|.+.+.+.......|-.....+..+...++....   .+.+.|++++.+.=++..||..+..++..+....+. 
T Consensus       864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            3356788888877766667788888888888877765443   467899999999999999999999999888765443 


Q ss_pred             -HHHhhhhHHHHHhhccCCc---hhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          470 -EWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       470 -~~~~~~l~~~l~~~l~d~~---~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                       ....+.++|.+..+-.|.+   -.+|..|+++++.+....+...   +.+.++..+.+.+.|+..-||..|+.+=..+.
T Consensus       944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence             2245788999988877765   5799999999999988665543   56788999999999999999999988766543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0004  Score=70.30  Aligned_cols=187  Identities=16%  Similarity=0.219  Sum_probs=133.3

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (587)
                      +.-....++|+.+.+|-++...+..+++.-.+  -.....++.+...++.|+++.|...+++++..+++..++. ..+.+
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-il~dL  807 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-ILPDL  807 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-hHHHH
Confidence            44445567888899999999999999884322  2345668888999999999999999999999998875432 33333


Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHH
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQ  318 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~  318 (587)
                      .......-+...+..|...-+++++++...|+-.  +...++..++....|++...|..++.+++.++....  -..+..
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~  887 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH  887 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence            3333333222324555556688888888887632  334688889999999999999999999999887653  122445


Q ss_pred             hHhHHHHHh-ccCCcHHHHHHHHHHHHccccccch
Q 007842          319 HILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGK  352 (587)
Q Consensus       319 ~i~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      ++...+... ..|.+..+|++|+..+..+-...|.
T Consensus       888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            555555443 3588899999999998887665553

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.08  E-value=0.00067  Score=64.03  Aligned_cols=188  Identities=16%  Similarity=0.089  Sum_probs=122.5

Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHcc-ccc-cc-hhHHHHhHHHHHHHhhcC-CChHHHHHHHHhhhhhhhhhchh--
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGM-APL-LG-KDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID--  392 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l-~~~-~~-~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--  392 (587)
                      .+...+.++-.+....-|..+..-+..+ +.. ++ .+.+...++-.++..+.| .++..|.-|++.|..++..-...  
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~  366 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF  366 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence            3444445555554555566665544433 221 22 355566777788888888 67888889999999988754322  


Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      ...+..+-.+.+...|.+..+-..+.+....+....-+..-...+.|.++.    .+...-.++++.+.++++.+..+..
T Consensus       367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL  442 (516)
T KOG2956|consen  367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL  442 (516)
T ss_pred             chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence            122344445555667776665555555554444443333323334554443    4555566788888999888877753


Q ss_pred             ---hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842          473 ---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       473 ---~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~  510 (587)
                         .+.+.|.+++...+.+..+|.+++.||..+...+|.+.
T Consensus       443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~  483 (516)
T KOG2956|consen  443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE  483 (516)
T ss_pred             HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh
Confidence               47889999999999999999999999999999998643

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.07  E-value=0.0013  Score=61.59  Aligned_cols=181  Identities=21%  Similarity=0.210  Sum_probs=126.2

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHH-hhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC----hHHHhhh
Q 007842          404 ELAEDRHWRVRLAIIEYIPLLAS-QLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQH  475 (587)
Q Consensus       404 ~~~~~~~~~vR~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~  475 (587)
                      +.+.++....|..++..+-.+.. .+-.+++   ...+.+.+.+.++-....-+..|+++++-++-.+|    .+.+.+.
T Consensus        50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~  129 (309)
T PF05004_consen   50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE  129 (309)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence            34567778999999888766653 3334433   34567777787877666777788899999888766    2335567


Q ss_pred             hHHHHHhhccCCc--hhHHHHHHHHHHHhhcccChHH-HHh---hHHHHHHh--hc-CC---------CChhHHHHHHHH
Q 007842          476 ITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI-TCS---RLLPVVIN--AS-KD---------RVPNIKFNVAKV  537 (587)
Q Consensus       476 l~~~l~~~l~d~~--~~~R~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~--~l-~d---------~~~~vR~~~~~~  537 (587)
                      +.|.|...+.|+.  ...|..++.+++-+.-..+.+. -..   ..+..+..  .. .|         +++.+..+++.+
T Consensus       130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            8899988888764  5688888888887754333221 122   23332211  11 11         246799999999


Q ss_pred             HHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          538 LQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       538 l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      .+.+...++..   ......+|.|..++..+|.+||.+|..++.-|.+..
T Consensus       210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999887763   334567889999999999999999999999887654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=0.0037  Score=68.30  Aligned_cols=326  Identities=13%  Similarity=0.108  Sum_probs=173.3

Q ss_pred             hhhcchhhHHHHHHHHHHHHHHhhcChh------h---HHhhHHHHHHHHhc--CCCCcchhhHHhhh-----HhhcCCC
Q 007842           93 TLCTVEETCVRDKAVESLCRIGSQMRES------D---LVDWYIPLVKRLAA--GEWFTARVSACGLF-----HIAYPSA  156 (587)
Q Consensus        93 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~------~---~~~~l~~~l~~l~~--~~~~~~r~~a~~~l-----~~~~~~~  156 (587)
                      .++.++|..||--...|+..+.+-+.|+      +   +...++..+..+.+  ++++..+..-...+     ..++..-
T Consensus        57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~  136 (1266)
T KOG1525|consen   57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE  136 (1266)
T ss_pred             HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence            3567899999999999999998877552      1   22222222333332  22444333322222     2222222


Q ss_pred             C-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHH-HHhh---hCCchhHHHHHHHHHHHHhh
Q 007842          157 P-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF-EDLT---QDDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       157 ~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-~~l~---~d~~~~vr~~a~~~l~~l~~  231 (587)
                      + .+...+++.++..+..++.+.--......+..+....  +.+...++.++ .++.   .+....-+..|-..+..++.
T Consensus       137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~  214 (1266)
T KOG1525|consen  137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD  214 (1266)
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence            2 3467788888888887776554444444444444443  23333344333 2333   33444445555555555554


Q ss_pred             hcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842          232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (587)
Q Consensus       232 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                      .+.+. ..+.+...+...-. .-..++...-+.+-.+....+.  ....++|.+..-+..++..+|..|...++.+....
T Consensus       215 ~~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~  290 (1266)
T KOG1525|consen  215 NLEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK  290 (1266)
T ss_pred             hhchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence            44332 22222222222111 1112222233333333222111  12347888888888888999999999999887644


Q ss_pred             CHHHH--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh-h
Q 007842          312 NPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ-V  388 (587)
Q Consensus       312 ~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~  388 (587)
                      +....  .+.++..+...+.|.+..||..+.+....+...-+.  ......-.+.-...|.++++|....-.+..... .
T Consensus       291 ~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~  368 (1266)
T KOG1525|consen  291 DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IAKASTILLALRERDLDEDVRVRTQVVIVACDVMK  368 (1266)
T ss_pred             hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH
Confidence            33221  256777788888999999999999887765433211  111111111222234445555433222221110 0


Q ss_pred             hchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842          389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       389 ~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~  427 (587)
                      +... +...++..+.+.+.|+.|+||..++.-+..+.+.
T Consensus       369 ~~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  369 FKLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hhhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            1111 1122666777788999999999999999888874

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.03  E-value=0.0017  Score=61.41  Aligned_cols=209  Identities=13%  Similarity=0.161  Sum_probs=135.3

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhH
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFD  434 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~  434 (587)
                      +...+..+-.++..+-+..|+..|..+...-+.   +++...++-.+.+.+.| .+...|..++..++.+.+.-....+.
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            333444444454566777777777666533221   23335667777788888 88899999999999998875443332


Q ss_pred             --HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--
Q 007842          435 --DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--  510 (587)
Q Consensus       435 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--  510 (587)
                        +..+.-++..-.|.+..|-..|.+..........+..-...+-|.+.    ..++..-.++++++..+.+.+..+.  
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~  443 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELL  443 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHH
Confidence              23344455566777776655555554444443333222233334333    2566677788889999998888765  


Q ss_pred             -HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842          511 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ  575 (587)
Q Consensus       511 -~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~  575 (587)
                       ..+.+.|.+++...+.+..||.+++.+|..+...+|.+.    ..|-|.+|....-.=+..++.+
T Consensus       444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~Lt~sk~~LlqlYinR  505 (516)
T KOG2956|consen  444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQLTSSKLNLLQLYINR  505 (516)
T ss_pred             HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhccHHHHHHHHHHHHH
Confidence             367899999999999999999999999999999988543    3455555544333334444433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.03  E-value=1.2e-05  Score=53.52  Aligned_cols=51  Identities=24%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842          529 NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQS  579 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~  579 (587)
                      .||..++.+|+.+....+..  .+...++|.|..+++|++++||..|+.||++
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            45666666666554333222  3445566666666666666666666666654

...

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0095  Score=59.36  Aligned_cols=142  Identities=23%  Similarity=0.218  Sum_probs=60.1

Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccchhH-------HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh----hc
Q 007842          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IG  390 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~  390 (587)
                      |.+-+.++-+|..||..|+..+-.+....|++.       ..+.=...+.++|.|+.+.||..|...+.++...    +.
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP  256 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP  256 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence            334444445555555555555544444433221       1222233344555555555555554444433321    12


Q ss_pred             hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 007842          391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (587)
Q Consensus       391 ~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  463 (587)
                      +..+.+.+-..+-++..|....||.+..+.+..+...--.-...+.++|.+-..+.|++..||.+++..+..+
T Consensus       257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            2211111111122233444445555555555544432211112334455555555555555555555555444

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0018  Score=64.17  Aligned_cols=148  Identities=22%  Similarity=0.216  Sum_probs=110.8

Q ss_pred             hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcccc-------chHHHHHHhcCCChHHHHHHHHHhHHH----H
Q 007842          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-------DLVPAYVRLLRDNEAEVRIAAAGKVTK----F  307 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~-------~l~~~l~~~l~d~~~~vr~~a~~~l~~----l  307 (587)
                      ....-|.+...++-++..||..|+..+-.+....+++....       .-...+..++.|+-+.||..|+..+..    +
T Consensus       172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f  251 (1005)
T KOG1949|consen  172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF  251 (1005)
T ss_pred             HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            34466788888999999999999999887776666554221       234456778999999999988876654    4


Q ss_pred             HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842          308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       308 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (587)
                      .+.+++....+.+-..+..+..|....||.+..+.+..+...-......++++|.+-..+.|.+..||.++..-|..+-
T Consensus       252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            4455655443333333445667888899999999999887665555678899999999999999999999988777653

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=0.034  Score=59.09  Aligned_cols=150  Identities=17%  Similarity=0.099  Sum_probs=91.0

Q ss_pred             hchhhHHhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Q 007842          389 IGIDLLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRL  463 (587)
Q Consensus       389 ~~~~~~~~~~l~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l  463 (587)
                      +|++.+...+.|.+.+.+..    .++.++.+|.-+++.+... +.+ |.+.-+|.++..++ .+++.||..++-++|.+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            34445555666766666633    3566777776666665431 222 33444666666665 67777777777777777


Q ss_pred             HHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842          464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       464 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                      +-.++.  +.+..-+++...+.|++..+|.+|+..+.++.-.-  -.-.+..++.+..++.|+++.+|..|-..+..+..
T Consensus       989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            654443  33455666777777777777777777777765310  00124456667777777777777777655555554


Q ss_pred             h
Q 007842          544 I  544 (587)
Q Consensus       544 ~  544 (587)
                      +
T Consensus      1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred             c
Confidence            3

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.99  E-value=0.00014  Score=74.03  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842          121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (587)
Q Consensus       121 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~  196 (587)
                      .+...+.|.+.+..+...-..|..-...+++...+.+.+    ....++|++.+.+.-++..||-....++..+....+.
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            345567777776666444455555555666666666654    4467788888888888888888877777776665543


Q ss_pred             --chhhhHHHHHHHHhhhCCc---hhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHH
Q 007842          197 --AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYE  267 (587)
Q Consensus       197 --~~~~~~l~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~  267 (587)
                        ....+.++|.+..+..|.+   -.||..|++++..+.+..|..   .+.+.++..+.+.++|+...||..|+.+=+.
T Consensus       943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence              3456677777777776665   467888888888888766653   2455677777777788877788877766443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.98  E-value=1.7e-05  Score=52.85  Aligned_cols=53  Identities=23%  Similarity=0.156  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHHhhcccCh--HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          489 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       489 ~~~R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      |.+|..|+.+||.++...+.  ..+.+.++|.+..+++|+++.||.+++.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57899999999987754443  225678889999999999999999999998865

...

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00048  Score=66.41  Aligned_cols=155  Identities=13%  Similarity=0.070  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  477 (587)
                      -..+.+++.|.++..|...+-.+....-..|...    ++..+++. .+|.+..||.+|+.++|-++-.      ....+
T Consensus       518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~l  587 (926)
T COG5116         518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDLL  587 (926)
T ss_pred             HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEec------Ccchh
Confidence            3456778899999999887665554333333322    33334443 7899999999999999987732      12345


Q ss_pred             HHHHhhc-cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhH
Q 007842          478 PQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTI  554 (587)
Q Consensus       478 ~~l~~~l-~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i  554 (587)
                      +...+++ .+.|+.+|.....++|-.+...|..    ..+..+..+..|++.-||+.++-+++-|..+..++  .....+
T Consensus       588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I  663 (926)
T COG5116         588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI  663 (926)
T ss_pred             hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence            5555654 4568999999999999999888864    45667777888999999999999999988765544  223455


Q ss_pred             HHHHHHhcCCCCc
Q 007842          555 RPCLVELTEDPDV  567 (587)
Q Consensus       555 ~~~l~~l~~d~d~  567 (587)
                      ..-+.++..|+-.
T Consensus       664 ~k~f~~vI~~Khe  676 (926)
T COG5116         664 IKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHhhhhH
Confidence            5555555555543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.88  E-value=0.031  Score=54.72  Aligned_cols=169  Identities=14%  Similarity=0.044  Sum_probs=110.1

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhCh--Hhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l   87 (587)
                      +..++-.+.|.|..+|..+...+..+...+++  +...+.++..+.+ ..|.++.||.++..+|.++-..-++++  ..+
T Consensus        93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~  170 (885)
T COG5218          93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI  170 (885)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence            56778889999999999999999888877777  6666666666655 778889999999999887765434333  334


Q ss_pred             HHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhH-HhhhHhhcCCCChHHHHHHH
Q 007842           88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELR  165 (587)
Q Consensus        88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a-~~~l~~~~~~~~~~~~~~l~  165 (587)
                      ..+|..+++ |+...||..|+-.+..     +     +.-.|++.+-+.|-+...|... ..++..+.........+.++
T Consensus       171 ~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~  240 (885)
T COG5218         171 VNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL  240 (885)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence            445555554 7888999988755432     1     2234555555555443333332 22333332222222334444


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAA  192 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~  192 (587)
                       ++...+.|.+..||.++..++..-..
T Consensus       241 -l~ewgl~dRe~sv~~a~~d~ia~~w~  266 (885)
T COG5218         241 -LMEWGLLDREFSVKGALVDAIASAWR  266 (885)
T ss_pred             -hhhhcchhhhhhHHHHHHHHHHHHhc
Confidence             66677889999999999888776443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.87  E-value=0.017  Score=66.09  Aligned_cols=290  Identities=12%  Similarity=0.161  Sum_probs=165.3

Q ss_pred             HHHHHHhHHHHHHhhcc------chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-h-----hhhh-chHHHH
Q 007842          180 RRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-----DCVA-HILPVI  246 (587)
Q Consensus       180 r~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~-~l~~~l  246 (587)
                      |....+-+..++...-.      ...+..+-+.+.......+..++..|+..|..++-.+-+ +     .+.+ .+-|+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            55556666666555332      122334444455543444567888888888888765443 1     1222 344433


Q ss_pred             HHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH------HHHHH
Q 007842          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQ  318 (587)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~  318 (587)
                      .-+.+..+..||...++++.++....+...  .++.++..+.....++++.+-..+...+..+....-.      .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            334455678999999999999987665422  3567788887777787777777778877766543111      12223


Q ss_pred             hHhHHHHHhccCC-cHHHHHHHHHHHHccccc-----------------------------------cchhHHHHhHHHH
Q 007842          319 HILPCVKELSSDS-SQHVRSALASVIMGMAPL-----------------------------------LGKDATIEQLLPI  362 (587)
Q Consensus       319 ~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~-----------------------------------~~~~~~~~~l~~~  362 (587)
                      ..+..+..+.... +..+--.++..+..++..                                   .+.+......+|.
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4445554444322 122222222222211000                                   0111222345666


Q ss_pred             HHH---hhcCCChHHHHHHHHhhhhhhhhhchh--------hHHhhHHHHHHHHhc-----------------C------
Q 007842          363 FLS---LLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE-----------------D------  408 (587)
Q Consensus       363 l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~~~-----------------~------  408 (587)
                      +..   +..|+..+||..|++.|-.+...+|..        .+...+.|.+..+-.                 +      
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            554   467899999999999999988887753        122345555543210                 0      


Q ss_pred             CChHHHHHHHHHHHHHHHhhCh-----hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842          409 RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       409 ~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      ..| ....+..++..++..+..     ....+.++.++..++..++..+-.....+|..++...|..
T Consensus      1429 ~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1429 DAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence            112 345555555555544321     1123445556666777888888888999999998877654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00064  Score=65.56  Aligned_cols=156  Identities=19%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHH
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  245 (587)
                      .++.+++.|.++..|...+-+++.-.-.-+.......+++   -..+|.++.||++|+-+++-++-.  +   ...+...
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~~--D---~~~lv~t  590 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCCD--D---RDLLVGT  590 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEec--C---cchhhHH
Confidence            3555666777777776554444432222222222222222   235666777777777666654321  1   1223333


Q ss_pred             HHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHH
Q 007842          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC  323 (587)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~  323 (587)
                      +.-+..+-++.||...+-++|-.|..-|.    +.-+.++..+..|...-||++|+-+++-+.-.+.++  .-...+...
T Consensus       591 velLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~  666 (926)
T COG5116         591 VELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKK  666 (926)
T ss_pred             HHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHH
Confidence            33344445667777777777766654332    234555666667777777777777777666555443  122344555


Q ss_pred             HHHhccCCcH
Q 007842          324 VKELSSDSSQ  333 (587)
Q Consensus       324 l~~~~~d~~~  333 (587)
                      +.+.+.|++.
T Consensus       667 f~~vI~~Khe  676 (926)
T COG5116         667 FNRVIVDKHE  676 (926)
T ss_pred             HHHHHhhhhH
Confidence            5555555443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.76  E-value=0.05  Score=53.37  Aligned_cols=172  Identities=17%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007842          199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~  276 (587)
                      ++..++..+......++..||..+++.+..+.+..++  +...+.++..+..-+-|..+.||..|+.++..+-..-+++.
T Consensus        88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            4444555555666777788888888888888887776  44455566666666667888888888888887765433322


Q ss_pred             cccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHH-HHHHccccccchhH
Q 007842          277 TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALA-SVIMGMAPLLGKDA  354 (587)
Q Consensus       277 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~-~~l~~l~~~~~~~~  354 (587)
                        ..+...+...+ .|++.+||..|+-.+..     +     +.-.|++.....|-+...|+... .++..++...... 
T Consensus       168 --n~~~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-  234 (885)
T COG5218         168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-  234 (885)
T ss_pred             --HHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence              23444444444 57888898887765422     1     23357777777887776666554 4555665432111 


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ....+. .+...+.|.+..|+.++...+..
T Consensus       235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence            111222 56677888888888888877654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.038  Score=60.86  Aligned_cols=145  Identities=12%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC  512 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~  512 (587)
                      ..++|.+...|..++..+|..|+..+|.+....+...+  .+.++...+.-+.|....+|+.+++....+....+.  ..
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IA  335 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hh
Confidence            44788888889999999999999999999876554433  345666777778999999999999999998765332  11


Q ss_pred             hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh-hchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      ......+.....|.++.+|.....++..+... +.-... ..++..+.+.+.|+-+.||..|...|.++.+
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            22222222233556666665554444332111 111111 2266677777899999999999999998877

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.74  E-value=4.6e-05  Score=43.39  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=16.1

Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          555 RPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       555 ~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      +|.+.++++|++++||..|+.+|+.+.+.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            45555555566666666666666555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.70  E-value=6.8e-05  Score=42.67  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=15.6

Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~  270 (587)
                      +|.+.++++|++|+||..|+.+++.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4555555556666666666666555554

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.70  E-value=0.015  Score=52.92  Aligned_cols=141  Identities=12%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCHHHH----HHhHhHHHHHhccCCcHHHHHHHHHHHHcccc--ccchhHHHHhH
Q 007842          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAP--LLGKDATIEQL  359 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~l  359 (587)
                      -..+.++++.+|..++..|..+...++++..    ...++.++...+.|. ..+..+ +..+..+..  .++.+. ...+
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~-~~~i   81 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPES-AVKI   81 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhh-HHHH
Confidence            3456777888888888888888887775422    234555555555432 223333 444444432  122222 1222


Q ss_pred             HHHHHHhh--cCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhC
Q 007842          360 LPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       360 ~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~  429 (587)
                      +..+.+..  +......|..+.+.+..+.......  ......+..+.+.+ ++++||.=..+.+.+..+...+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            22222211  1223556666666666665543211  11122333333333 34566665555555555555444

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.68  E-value=0.021  Score=52.02  Aligned_cols=228  Identities=14%  Similarity=0.155  Sum_probs=143.8

Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccchhHH----HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh--hchhhHHhh
Q 007842          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQS  397 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~  397 (587)
                      +...+.++++.+|..+...|..+...++++..    .+.++.++..-+.|. ..+.. ++.++..+.+.  ++.+. ...
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~-~~~   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPES-AVK   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhh-HHH
Confidence            45567889999999999999988877765332    355667777777554 33433 36666666532  22222 123


Q ss_pred             HHHHHHHHh--cCCChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842          398 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWA  472 (587)
Q Consensus       398 ~l~~l~~~~--~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      ++..+.+-.  +.-....|..+.+.+..+........  ..+.++..+.+.+ +..+++--..+.+.+..+.+.+....+
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~  160 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF  160 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence            333333211  22345789999998888876542211  1123333444433 567787777788888888887765555


Q ss_pred             hhhhHHHHHhhc--------cCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          473 MQHITPQVLEMI--------NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       473 ~~~l~~~l~~~l--------~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      .+.++..+..++        +|+..-.|+.--.++.....  ....+.+..+|.++.-+.+..+.++.-++++|...+..
T Consensus       161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            666666655442        23333344444444444433  22346788999999999999999999999999999999


Q ss_pred             hchHHHHhhHHH
Q 007842          545 VDQSMVEKTIRP  556 (587)
Q Consensus       545 ~~~~~~~~~i~~  556 (587)
                      ++.+...+++.+
T Consensus       239 y~~~~~~~~~~~  250 (262)
T PF14500_consen  239 YGADSLSPHWST  250 (262)
T ss_pred             CCHHHHHHHHHH
Confidence            988755444433

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.67  E-value=0.0064  Score=58.39  Aligned_cols=127  Identities=20%  Similarity=0.237  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc------CCchhHHHHHHHHHHHhhccc-----C---------
Q 007842          448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----G---------  507 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~~R~~a~~~l~~l~~~~-----~---------  507 (587)
                      .....|.+|...+..+++.++... .+.+...+..+++      ..+|+-+.+|+..++.++...     |         
T Consensus       223 d~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  223 DSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             ccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            346788999999999998766542 2222222222222      347899999999999998533     1         


Q ss_pred             -hHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007842          508 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI  577 (587)
Q Consensus       508 -~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al  577 (587)
                       .+++...++|.+. .-.+..|.+|..|++.+..+-..++.+. ...++|.+...+.+++.-|+.+|+.|+
T Consensus       302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence             1345677788877 4446789999999999999988876654 466999999999999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.67  E-value=0.02  Score=53.90  Aligned_cols=175  Identities=18%  Similarity=0.201  Sum_probs=92.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchH
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  243 (587)
                      +-.++....+++++.||+.+.+++|-++-.-  ...-...++++.+..+.+++.+|..|++++..+.-..+.......  
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld--~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~--  103 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD--KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE--  103 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch--
Confidence            3345567788888899999999988877652  344445566666665555778888888887777655543211100  


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh--hCH-HHHHHhH
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNP-ELAIQHI  320 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~-~~~~~~i  320 (587)
                             .+++                   .......+...+.+.+.+.++++|..+++++.++.-.  +.. ......+
T Consensus       104 -------~~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L  157 (298)
T PF12719_consen  104 -------SDND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL  157 (298)
T ss_pred             -------hccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence                   0000                   1112234566666666666666777777766664432  222 2222222


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccc--hhHHHHhHHHHHHHhhc
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK  368 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~  368 (587)
                      +-..-.-...++.++|......+..++..-.  ++.+.+.++|.+..+.+
T Consensus       158 ll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  158 LLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            2111111223345666666655555544322  22234445555555444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.60  E-value=0.01  Score=62.65  Aligned_cols=218  Identities=16%  Similarity=0.161  Sum_probs=118.1

Q ss_pred             CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--
Q 007842          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--  408 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--  408 (587)
                      ..+..|.....++...+..    ..    +-.+.+++....-.- ..+...+..+.......  ...++..+.++++.  
T Consensus       376 ~~~~~r~~~lDal~~aGT~----~a----v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P--t~e~l~~l~~L~~~~~  444 (618)
T PF01347_consen  376 KKEQARKIFLDALPQAGTN----PA----VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP--TEELLKELFELAKSPK  444 (618)
T ss_dssp             --HHHHHHHHHHHHHH-SH----HH----HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-------HHHHHHHHHHHT-HH
T ss_pred             cHHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC--CHHHHHHHHHHHhCcc
Confidence            3567777777777766531    11    122333333321111 11333333333222111  13445555555543  


Q ss_pred             --CChHHHHHHHHHHHHHHHhhChh----------------hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842          409 --RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       409 --~~~~vR~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                        .+..+|..++-.++.+.......                .+.+.+...+.......+...+..++.+||++..     
T Consensus       445 ~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----  519 (618)
T PF01347_consen  445 VKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----  519 (618)
T ss_dssp             HHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------
T ss_pred             ccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----
Confidence              45678888888888877654222                2334455555555567778889999999998753     


Q ss_pred             HHhhhhHHHHHhhccCC---chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          471 WAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       471 ~~~~~l~~~l~~~l~d~---~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                         ...++.+...+.+.   ...+|.+|+.++..+..... +.+.+.++|.+.+-  ..++++|.+|...|-..-+..  
T Consensus       520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~~P~~--  591 (618)
T PF01347_consen  520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRIAAYLILMRCNPSP--  591 (618)
T ss_dssp             ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT---H--
T ss_pred             ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCCH--
Confidence               35677787777665   67899999999998865443 22344444444442  236789999987777653321  


Q ss_pred             HHHHhhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007842          548 SMVEKTIRPCLVE-LTEDPDVDVRFFATQAI  577 (587)
Q Consensus       548 ~~~~~~i~~~l~~-l~~d~d~~Vr~~a~~al  577 (587)
                           ..+..+.. +-.|++..|+......|
T Consensus       592 -----~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  592 -----SVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             -----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence                 23333333 56788889988776655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.60  E-value=0.043  Score=51.67  Aligned_cols=214  Identities=16%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             HhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh-----------h
Q 007842          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----------F  433 (587)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-----------~  433 (587)
                      ..++..++.||..++++++-.+- ++.+ .....++.+...++..+..+|..+++++-.+....|.+.           .
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~L-ld~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCL-LDKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHH-hChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            33444444555555554444331 1111 112233333333333344455555444444444333221           2


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC----CchhHHHHHHHHHHHhhcccC--
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG--  507 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~~R~~a~~~l~~l~~~~~--  507 (587)
                      ...+...+...+.+.++.+|..|++.++++.-.-.... .+.++..++-...+    ++...|+.--.++...+....  
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~  190 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN  190 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            23466677777777788888888888888764211100 12334444333333    356677777666666654322  


Q ss_pred             hHHHHhhHHHHHHhhcCCCC----hhHHHHHHHHHHHhhhhhch--------------HHHHhhHHHHHHHhcCCCCcc-
Q 007842          508 SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQ--------------SMVEKTIRPCLVELTEDPDVD-  568 (587)
Q Consensus       508 ~~~~~~~il~~l~~~l~d~~----~~vR~~~~~~l~~l~~~~~~--------------~~~~~~i~~~l~~l~~d~d~~-  568 (587)
                      ...+.+.++|.+..+.+.+.    +.-.....+....+.....+              ..+.......+..+.+|+... 
T Consensus       191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~  270 (298)
T PF12719_consen  191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEK  270 (298)
T ss_pred             HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccch
Confidence            22244556666666544332    11111222222222222111              123344566666677666655 


Q ss_pred             -HHHHHHHHHHHHH
Q 007842          569 -VRFFATQAIQSID  581 (587)
Q Consensus       569 -Vr~~a~~al~~l~  581 (587)
                       .+..-.++|+++.
T Consensus       271 ~~~k~~~~~L~~L~  284 (298)
T PF12719_consen  271 EERKALCKALSKLE  284 (298)
T ss_pred             HHHHHHHHHHhccc
Confidence             7777777877764

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.59  E-value=0.094  Score=60.37  Aligned_cols=304  Identities=12%  Similarity=0.119  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHhhhcCh------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-c-----cccchHHHHH
Q 007842          219 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV  286 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~-----~~~~l~~~l~  286 (587)
                      |.-+++-+..++..--.      ...|..+.+.+.....+++..++..|+..|.+++..+-+. .     .-++++..|.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            55555555555543222      2345556666677656667789999999998888755431 1     1234666666


Q ss_pred             HhcC-CChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc-cc---h--hHHHH
Q 007842          287 RLLR-DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE  357 (587)
Q Consensus       287 ~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~  357 (587)
                      ..+. ..+.++|...++++..+....+..  ...+.++..+.....++++.+-..+.+.+..+... ++   .  .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            6554 456899999999999887765543  12356666776666788887777787777665432 11   1  11223


Q ss_pred             hHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhh-----------------------------------chhhHHhhHHHH
Q 007842          358 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GIDLLSQSLLPA  401 (587)
Q Consensus       358 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~-----------------------------------~~~~~~~~~l~~  401 (587)
                      .++..+.++.+.. +.++-..++..|..++..+                                   +.+......+|.
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4444444444332 2444444554444332211                                   011112345555


Q ss_pred             HHH---HhcCCChHHHHHHHHHHHHHHHhhChhh--------hHHHHHHHHHHhcC----------------------CC
Q 007842          402 IVE---LAEDRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ----------------------DK  448 (587)
Q Consensus       402 l~~---~~~~~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~----------------------d~  448 (587)
                      +..   +..|+...||..+++.+-.+....|..+        +...+.|++..+-.                      +.
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            544   5678999999999998877776665322        23345555433210                      12


Q ss_pred             chHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHH
Q 007842          449 VYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVI  520 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~  520 (587)
                      ..++......++..++..+..-+     ..+.++..+...+..++..+-..+..|+..+....|..+   .+..+...+.
T Consensus      1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076       1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            23466777777777776554432     224444444455667788888889999999887666532   3444444444


Q ss_pred             hh
Q 007842          521 NA  522 (587)
Q Consensus       521 ~~  522 (587)
                      ++
T Consensus      1509 ~l 1510 (1780)
T PLN03076       1509 EA 1510 (1780)
T ss_pred             HH
Confidence            43

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.1  Score=58.59  Aligned_cols=232  Identities=18%  Similarity=0.146  Sum_probs=133.2

Q ss_pred             hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhC--
Q 007842          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN--  312 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~--  312 (587)
                      +.....-..++...+..+++..|..+.++++.++...+...+...+...+..-+.+ .++..|..-..+++.+-+..|  
T Consensus       871 e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~  950 (2067)
T KOG1822|consen  871 EEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI  950 (2067)
T ss_pred             HHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence            33444445555566667788888888888888888877665555555555555554 446667666677777766554  


Q ss_pred             -HHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhc-C--CChHHHHHHHHhhh--
Q 007842          313 -PELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK-D--EFPDVRLNIISKLD--  383 (587)
Q Consensus       313 -~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-d--~~~~vr~~a~~~l~--  383 (587)
                       .......-+..+..+.+|++. .|+.....++..+....++..  +.+..+..+..++- +  ...+++...-+.+.  
T Consensus       951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~ 1030 (2067)
T KOG1822|consen  951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGD 1030 (2067)
T ss_pred             CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccc
Confidence             333334444566666677654 888888887777665544422  12222233333332 2  23445554444444  


Q ss_pred             ----hhhhhhchhh-----------HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842          384 ----QVNQVIGIDL-----------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (587)
Q Consensus       384 ----~l~~~~~~~~-----------~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  448 (587)
                          .++..+|++-           +....+-...-.+..+++-+...+++++..+.-.-+...-.+.+++.+..++...
T Consensus      1031 ~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             hhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcch
Confidence                4444444321           1111111111123445777888888877776544333333456777777777777


Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 007842          449 VYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~  467 (587)
                      -.-.|.+++.++..+.+..
T Consensus      1111 ~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred             hhhhhhhHHhhhhHHhHHH
Confidence            7777888888877776643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.0018  Score=67.18  Aligned_cols=219  Identities=18%  Similarity=0.144  Sum_probs=143.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh---hChhh
Q 007842          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---LGVGF  432 (587)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~  432 (587)
                      +|++++.|-+.  --|..|+..|+++.. +|.=    .+.-.+.|.+.++++++-...|-..+-.+..+...   ...+.
T Consensus       474 LPiVLQVLLSQ--vHRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL  550 (1387)
T KOG1517|consen  474 LPIVLQVLLSQ--VHRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL  550 (1387)
T ss_pred             cchHHHHHHHH--HHHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence            35555444332  235557777777764 2221    22346789999999999989988887777666432   12222


Q ss_pred             hHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhCh--H-HHhhhhHHHHHhhccCC-chhHHHHHHHHHHHhhcc
Q 007842          433 FDDKLGALCMQWLQD---KVYSIRDAAANNLKRLAEEFGP--E-WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPV  505 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~  505 (587)
                      +++..-..++..+.+   -+++-|.-|+-.|+.++..+.-  + -+...++..++..++|+ .+-.|+-.+-+||.+-+.
T Consensus       551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d  630 (1387)
T KOG1517|consen  551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED  630 (1387)
T ss_pred             HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence            222211222333333   1347788888899999886533  2 24567888888888885 789999999999999876


Q ss_pred             cChHHH---HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh----chH--------------HHHhhHHH----HHHH
Q 007842          506 MGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV----DQS--------------MVEKTIRP----CLVE  560 (587)
Q Consensus       506 ~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~----~~~--------------~~~~~i~~----~l~~  560 (587)
                      +....+   ....-..+...++|+.++||.+++.+|+.+....    .+.              ...+...+    .+..
T Consensus       631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~  710 (1387)
T KOG1517|consen  631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA  710 (1387)
T ss_pred             cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence            655432   3456677888899999999999999999988752    211              00122222    4445


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007842          561 LTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       561 l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      +.+|..+-||...+-+|..+.
T Consensus       711 ~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  711 LVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHhccchHHHHHHHHHHHHHH
Confidence            678999999988888877654

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.13  Score=52.14  Aligned_cols=510  Identities=12%  Similarity=0.157  Sum_probs=237.0

Q ss_pred             cccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc-CCC----
Q 007842            8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VGG----   80 (587)
Q Consensus         8 ~~~~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~-~~~----   80 (587)
                      ++.++..+.....+  |+..|++|+..+..+-.   .+..++--+..+.+.. .++.++--..+.|...++. .+.    
T Consensus         2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~   77 (980)
T KOG2021|consen    2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLN   77 (980)
T ss_pred             chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHH
Confidence            44566666666654  88999999998887632   2334444455555433 3444443333333332221 110    


Q ss_pred             -cc-hHhhhHHHHhh-hhcch----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842           81 -VE-HAHVLLPPLET-LCTVE----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY  153 (587)
Q Consensus        81 -~~-~~~~l~~~l~~-l~~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~  153 (587)
                       .. ....+...+.. .+.++    -+-++.++.+.+..+.-...+......+..++.-+..+.    +.+....+..+.
T Consensus        78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s----~~~~~dfflkvl  153 (980)
T KOG2021|consen   78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS----AISGLDFFLKVL  153 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc----chhhHHHHHHHH
Confidence             00 11223333332 22233    357889999999998877777665555555554443332    111111111111


Q ss_pred             CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      -..+.+..+.-      ..+ .+.++++..  .+..-+..-.-+........++...-+..++.+-..+++++++..+.+
T Consensus       154 laIdsEiad~d------v~r-T~eei~knn--liKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWI  224 (980)
T KOG2021|consen  154 LAIDSEIADQD------VIR-TKEEILKNN--LIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWI  224 (980)
T ss_pred             HHhhhHhhhcc------ccC-ChHHHHHHh--hHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhh
Confidence            11111000000      000 011111110  000000000001111111222222222235666666677776666655


Q ss_pred             Chhh-hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH---hc----CC--ChHHHHHHHHHh
Q 007842          234 EPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR---LL----RD--NEAEVRIAAAGK  303 (587)
Q Consensus       234 ~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~---~l----~d--~~~~vr~~a~~~  303 (587)
                      .-.. ..+..++++...++  ...+|.+|+.++-.+...--+...+-.++..+..   +.    .|  .+.++-    ..
T Consensus       225 dInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~----e~  298 (980)
T KOG2021|consen  225 DINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFW----ES  298 (980)
T ss_pred             hhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHH----HH
Confidence            4321 13446666666665  4678888888877766431111111123333311   11    12  222222    22


Q ss_pred             HHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhh
Q 007842          304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (587)
Q Consensus       304 l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (587)
                      +..+....|.+     ++-...++.+.-+..++..+...+             ..++|.+.+.+.++..++-.+...-+.
T Consensus       299 vskLitg~gve-----l~~i~s~lnseld~~~kqn~l~~l-------------l~~vpyllq~l~~e~ddit~~ifpFls  360 (980)
T KOG2021|consen  299 VSKLITGFGVE-----LTIIISQLNSELDTLYKQNVLSIL-------------LEIVPYLLQFLNNEFDDITAKIFPFLS  360 (980)
T ss_pred             HHHHHhhccee-----eehhHhhhhhccCHHHHHHHHHHH-------------HHHHHHHHHHhcccchhhHHHHHHHHH
Confidence            22333333322     111222222333344444333221             235677777777776666665555444


Q ss_pred             hhhhhhch------h---hHHhhHHHHHHHHhcC------CC----------hHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842          384 QVNQVIGI------D---LLSQSLLPAIVELAED------RH----------WRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (587)
Q Consensus       384 ~l~~~~~~------~---~~~~~~l~~l~~~~~~------~~----------~~vR~~~~~~l~~l~~~~~~~~~~~~l~  438 (587)
                      .....+..      .   .+...+...+.++.-|      .+          ..+|...-.....++ .+.++.+...+-
T Consensus       361 dyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir  439 (980)
T KOG2021|consen  361 DYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIR  439 (980)
T ss_pred             HHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            43322211      1   1112233333333311      11          346666444333333 345555554444


Q ss_pred             HHHHHh---cCCCchHHHHHHHHHHHHHHHHhChHHH------------hhhhHHHHHh--hccCCchhHHHHHHHHHHH
Q 007842          439 ALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWA------------MQHITPQVLE--MINNPHYLYRMTILRAISL  501 (587)
Q Consensus       439 ~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~l~~~l~~--~l~d~~~~~R~~a~~~l~~  501 (587)
                      ..+-..   -+.++|..-+.|+..+-.+.+....+.+            ...+++.++.  ....++..+..-.++.+.+
T Consensus       440 ~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivR  519 (980)
T KOG2021|consen  440 QSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVR  519 (980)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHH
Confidence            444333   3567788888998888888765533221            1133333332  2455677777777777777


Q ss_pred             hhcccChHHHHhhHHHHHHhh------cCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhc
Q 007842          502 LAPVMGSEITCSRLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT  562 (587)
Q Consensus       502 l~~~~~~~~~~~~il~~l~~~------l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~  562 (587)
                      ....+..+   ..-+|.++..      +.+++..||..+...+.+..+.+...  .+.+.++..+..++
T Consensus       520 Y~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL  585 (980)
T KOG2021|consen  520 YNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL  585 (980)
T ss_pred             HHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65544433   3345555543      45669999999999999988776544  34455555555444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.007  Score=54.32  Aligned_cols=179  Identities=12%  Similarity=0.109  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh--
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--  473 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--  473 (587)
                      +......+.+.+|......+..+..++..-. +....   .++..+.+-+++....|-.+|+.+++.+++.++.....  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l  168 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL  168 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445678899998888888887765432 33322   34445566678899999999999999999988765322  


Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----H
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----M  549 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~  549 (587)
                      +.++-.|..-....+.-+|..|-.+|..+.....+.    .+++.+...+++.++.+|..++..+......++-.    +
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~  244 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ  244 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence            222222222233457789999999999999887764    56667777788889999999999988887776522    2


Q ss_pred             HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          550 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       550 ~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      +.....+.+.+-..|.=+.+|..|.-.+....+
T Consensus       245 ~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~  277 (334)
T KOG2933|consen  245 GSCDLSRAAQEQGSDKLPELREAARFVRLELKE  277 (334)
T ss_pred             hHHHHHHHHHhhhcccccccccchhHHHHhHHH
Confidence            333455666665566666555555444444433

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.51  E-value=0.21  Score=53.88  Aligned_cols=169  Identities=15%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhChHHHhh--hhHHHHHhhccC
Q 007842          414 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD---KVYSIRDAAANNLKRLAEEFGPEWAMQ--HITPQVLEMINN  486 (587)
Q Consensus       414 R~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~d  486 (587)
                      |..+-.++..+++.+|...+.  +++...++..+.+   .+. --......+..+....+ +++..  ..+|.+.....+
T Consensus       750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~-s~l~~~~~~l~~l~~~~~s  827 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMH-SFLHPLGSLLPRLFFFVRS  827 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhh-hhhhhhhhhhhHHHHhccc
Confidence            666777788888888866543  3344444443322   110 00111111111111111 11222  567788888888


Q ss_pred             CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc---hHHHHhhHHHHHHHhcC
Q 007842          487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTE  563 (587)
Q Consensus       487 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~  563 (587)
                      ....+|.++.++++.+.+....+ ....++..+..++.+.+..+|...+..+-.......   ...+...++|.|...+.
T Consensus       828 ~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms  906 (1549)
T KOG0392|consen  828 IHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS  906 (1549)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence            89999999999999998765544 335566677777888777777766665554443322   22455667778888889


Q ss_pred             CCCccHHHHHHHHHHHHHHhhc
Q 007842          564 DPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       564 d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      |....||..|.+++..+..+++
T Consensus       907 d~~d~vR~aat~~fa~lip~~~  928 (1549)
T KOG0392|consen  907 DQIDSVREAATKVFAKLIPLLP  928 (1549)
T ss_pred             cchHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999877654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.41  E-value=0.059  Score=57.00  Aligned_cols=217  Identities=17%  Similarity=0.146  Sum_probs=109.9

Q ss_pred             ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc-Ch-hhhhhchHHHHHHhccCC
Q 007842          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP-QDCVAHILPVIVNFSQDK  253 (587)
Q Consensus       176 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~-~~~~~~l~~~l~~~~~d~  253 (587)
                      ....|.....++......    .....+...+..   .+-...  .+...+..+.... .+ ......+.+++..-....
T Consensus       377 ~~~~r~~~lDal~~aGT~----~av~~i~~~I~~---~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~  447 (618)
T PF01347_consen  377 KEQARKIFLDALPQAGTN----PAVKFIKDLIKS---KKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKN  447 (618)
T ss_dssp             -HHHHHHHHHHHHHH-SH----HHHHHHHHHHHT---T-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT
T ss_pred             HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc---CCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccC
Confidence            456677766666654432    222333333222   222211  1334454444433 22 333444444443322234


Q ss_pred             cHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHHHHHHhHHHHHhhhCHHHHH
Q 007842          254 SWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPELAI  317 (587)
Q Consensus       254 ~~~vR~~a~~~l~~~~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      ++.+|..++-+++.+.......            ...+.+++.+...+    ...+.+.+..++++|+.++.        
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------  519 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------  519 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence            6789999999999988754222            22334555554444    34566778888888888753        


Q ss_pred             HhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842          318 QHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       318 ~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  394 (587)
                      +..++.+...+.+.   ...+|.+|+.++..++...+ +...+.++|++.+  ..++.++|.+|+..|-..-+.      
T Consensus       520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~P~------  590 (618)
T PF01347_consen  520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMN--TTEDPEVRIAAYLILMRCNPS------  590 (618)
T ss_dssp             GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT---------
T ss_pred             chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCC------
Confidence            34566676666655   67899999999988754432 2233344444333  234578999988777654332      


Q ss_pred             HhhHHHHHHHHh-cCCChHHHHHHHH
Q 007842          395 SQSLLPAIVELA-EDRHWRVRLAIIE  419 (587)
Q Consensus       395 ~~~~l~~l~~~~-~~~~~~vR~~~~~  419 (587)
                       ..++..+...+ .+++..|+..+..
T Consensus       591 -~~~l~~i~~~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  591 -PSVLQRIAQSLWNEPSNQVASFVYS  615 (618)
T ss_dssp             -HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhCchHHHHHHHHH
Confidence             23344444433 4566666655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.0088  Score=62.37  Aligned_cols=222  Identities=13%  Similarity=0.137  Sum_probs=142.3

Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccchhH---HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh---H
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L  394 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~  394 (587)
                      +|.+.+.+-..  --|.-|...|+.+...-+...   ..--++|.++++|++.-.+.|...+-..++|...=..-+   +
T Consensus       474 LPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv  551 (1387)
T KOG1517|consen  474 LPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV  551 (1387)
T ss_pred             cchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence            45444443322  234445555555543322221   122478999999999999999888777777654321100   0


Q ss_pred             HhhHHHHHHHHhcC---CChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHh
Q 007842          395 SQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       395 ~~~~l~~l~~~~~~---~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~  467 (587)
                      .+..-..+.+.+.+   -+++.|..++-.+..+...+.   .+.+...++.+++..++|+ .+-.|+-.+-+||.+-+.+
T Consensus       552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~  631 (1387)
T KOG1517|consen  552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY  631 (1387)
T ss_pred             hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc
Confidence            00000001111222   235788888888888887653   3344556788888899985 7899999999999998877


Q ss_pred             ChHHH---hhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc----ChHH--------------HHhhHH----HHHHhh
Q 007842          468 GPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM----GSEI--------------TCSRLL----PVVINA  522 (587)
Q Consensus       468 ~~~~~---~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~----~~~~--------------~~~~il----~~l~~~  522 (587)
                      ....+   .......|...+.|+-++||.+|+.++|.+....    ....              ..+...    -.++..
T Consensus       632 ~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~  711 (1387)
T KOG1517|consen  632 DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLAL  711 (1387)
T ss_pred             chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHH
Confidence            55422   2445566777889999999999999999998752    2110              012222    367778


Q ss_pred             cCCCChhHHHHHHHHHHHhhhh
Q 007842          523 SKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       523 l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ++|.++-||...+-++..+.-.
T Consensus       712 vsdgsplvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  712 VSDGSPLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             HhccchHHHHHHHHHHHHHHHh
Confidence            8999999999999999887654

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.44  Score=52.79  Aligned_cols=150  Identities=15%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             HhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHh--hC-hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH
Q 007842          395 SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (587)
Q Consensus       395 ~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~--~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      .+.++..+..+ ..+..|++|.++++.+..+.-.  ++ .+.-.+.+-..+...+.|.+-+||+.|+.+|.-+.+.-...
T Consensus      1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence            35566666643 3457899999999988876543  22 22234667888899999999999999999999988632211


Q ss_pred             HHhhhhHHHHHhh--ccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          471 WAMQHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       471 ~~~~~l~~~l~~~--l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      + ...........  ....+...+.+|...+|.++-.++-..  +.++.+..+....+++ ..++.++-+++...-....
T Consensus      1604 ~-~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1604 F-VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred             c-chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence            1 11112222221  223356678889999999987655321  2233333344444454 7788888888888765443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.28  E-value=0.033  Score=58.20  Aligned_cols=214  Identities=17%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--
Q 007842          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--  408 (587)
Q Consensus       333 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--  408 (587)
                      +..|.....++...+..    ..    +..+.+.+....  ......++..+......-     ...++..+.+++++  
T Consensus       340 ~~~r~~~~Dal~~~GT~----~a----~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P-----t~~~l~~l~~l~~~~~  406 (574)
T smart00638      340 KKARRIFLDAVAQAGTP----PA----LKFIKQWIKNKKITPLEAAQLLAVLPHTARYP-----TEEILKALFELAESPE  406 (574)
T ss_pred             HHHHHHHHHHHHhcCCH----HH----HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHhcCcc
Confidence            66777777777666531    11    223334444332  222222333332222211     13556666666665  


Q ss_pred             --CChHHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHH----HhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 007842          409 --RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCM----QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (587)
Q Consensus       409 --~~~~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  476 (587)
                        +++.+|..++-.++.+......      ....+.+.+.+.    ....+.+...+..++++||++...        ..
T Consensus       407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------~~  478 (574)
T smart00638      407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------SS  478 (574)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------hH
Confidence              3567888888888888874421      111233444444    444556777788888888876532        22


Q ss_pred             HHHHHhhcc---CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhh
Q 007842          477 TPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT  553 (587)
Q Consensus       477 ~~~l~~~l~---d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  553 (587)
                      ++.+...+.   .....+|..|+.++..++...... ..+.+++.+.+  .+.++++|.+|+..+-..-+..       .
T Consensus       479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~~-------~  548 (574)
T smart00638      479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETKPSV-------A  548 (574)
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCCH-------H
Confidence            333333333   235689999999999887654432 33344444432  2357889999998887764432       2


Q ss_pred             HHHHHHH-hcCCCCccHHHHHHHHH
Q 007842          554 IRPCLVE-LTEDPDVDVRFFATQAI  577 (587)
Q Consensus       554 i~~~l~~-l~~d~d~~Vr~~a~~al  577 (587)
                      .+..+.. +..|++..|+......|
T Consensus       549 ~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      549 LLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHHHHHhhcCcHHHHHHhHHhh
Confidence            3333333 56788888887765543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.23  E-value=0.0068  Score=51.25  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             CCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          524 KDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      .+.+..+-...++++..++...+..    .+...++..+..+..+.|.+||..+..+++.+...
T Consensus       112 ~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  112 AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             cccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            4557778889999999998776654    44566667777788899999999999999987653

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.17  E-value=0.052  Score=56.71  Aligned_cols=162  Identities=15%  Similarity=0.069  Sum_probs=91.8

Q ss_pred             HHHHHHhhcC----CChHHHHHHHHhhhhhhhhhch------hhHHhhHHHHHHH----HhcCCChHHHHHHHHHHHHHH
Q 007842          360 LPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       360 ~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~----~~~~~~~~vR~~~~~~l~~l~  425 (587)
                      +..+..++++    .++.++..++-+++.+....-.      ....+.++|.+.+    ...+.+...+..++++||.+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            3344444443    3577888888888888753321      1112344444444    334456666777888777653


Q ss_pred             HhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC--CchhHHHHHHHHHHHhh
Q 007842          426 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLA  503 (587)
Q Consensus       426 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~  503 (587)
                      .    ......+.|.+. .-.+....+|.+|+.+|..+......     .+.+.+...+.|  .+..+|.+|+..+-..-
T Consensus       475 ~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~  544 (574)
T smart00638      475 H----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMETK  544 (574)
T ss_pred             C----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence            2    222223333332 12344578999999999988764332     234444444444  36789999998887663


Q ss_pred             cccChHHHHhhHHHHHHh-hcCCCChhHHHHHHHHH
Q 007842          504 PVMGSEITCSRLLPVVIN-ASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       504 ~~~~~~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l  538 (587)
                      +.       ...+..+.. .-.+++..|+..+...|
T Consensus       545 P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      545 PS-------VALLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             CC-------HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence            31       122223333 34577888887665543

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=97.17  E-value=0.89  Score=53.93  Aligned_cols=248  Identities=17%  Similarity=0.141  Sum_probs=136.0

Q ss_pred             CCcHHHHHHHHHHhccccccCCC-c-------chHhhhHHHHhhh-hcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHH
Q 007842           58 DDDDEVLLAMAEELGVFIPYVGG-V-------EHAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIP  128 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~l~~~~~~-~-------~~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  128 (587)
                      .+++++|...+..+..+..+... .       ++....+..+..+ +.+.++.+|.+....+.   +...+.......+.
T Consensus       492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr  568 (2341)
T KOG0891|consen  492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLR  568 (2341)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHH
Confidence            46778888776655443332111 1       1123333333332 45788888877776666   22222222333444


Q ss_pred             HHHHHhcCCCCcchhhHHhhhHhhcCCCCh----HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhH
Q 007842          129 LVKRLAAGEWFTARVSACGLFHIAYPSAPD----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTD  202 (587)
Q Consensus       129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~  202 (587)
                      ......++..+..+..+...++.++...+.    ..+...+.....+-.+....+...++.-+..+......  ..+...
T Consensus       569 ~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~  648 (2341)
T KOG0891|consen  569 LLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGP  648 (2341)
T ss_pred             HHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence            444455566777777777777766664432    23344444444444444443444443333333322210  122233


Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCC----
Q 007842          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE----  275 (587)
Q Consensus       203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~----  275 (587)
                      ++-.+...+.+....+-..+...++.++...+.+  ...+.+++.+.+.+.|. +..-|.++.++++++...-|-.    
T Consensus       649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~  728 (2341)
T KOG0891|consen  649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPY  728 (2341)
T ss_pred             hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccc
Confidence            3344444556677777788888888888766632  22346667776666664 4456778888999888765421    


Q ss_pred             ccccchHHHHHHhcCCC-hHHHHHHHHHhHHHHH
Q 007842          276 PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFC  308 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~  308 (587)
                      ...+.++..+...++.. ...+|.++++.++..+
T Consensus       729 ~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  729 LDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             ccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence            12234666666555443 4778888888888443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.15  E-value=0.18  Score=45.44  Aligned_cols=194  Identities=15%  Similarity=0.182  Sum_probs=118.6

Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH-
Q 007842          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-  248 (587)
Q Consensus       170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-  248 (587)
                      .+.+..++.......++|..++.+- . ...+.++..+..+.+......+..+...+..+...-+..  .+.+-+.+.. 
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~-~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~   83 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHK-N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL   83 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccC-c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence            3566677777777777777777653 1 445566666666666666555555555555554432221  1333333333 


Q ss_pred             --------hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842          249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH  319 (587)
Q Consensus       249 --------~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                              ...+..|......+.++..++...++  ...++++.+...+ ++.++.++..+++++..+++.--.+ + ..
T Consensus        84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~-~s  159 (234)
T PF12530_consen   84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-F-YS  159 (234)
T ss_pred             HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-H-HH
Confidence                    12345678888878888889987766  3457899999999 7888999999999999998532111 1 22


Q ss_pred             HhHHHHH-hccCCcHHHHHHHHHHHHcccccc-c---hhHHHHhHHHHHHHhhcCCC
Q 007842          320 ILPCVKE-LSSDSSQHVRSALASVIMGMAPLL-G---KDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       320 i~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~  371 (587)
                      .+..+.+ +-.+..+.+-...++.+..+...- .   .+.+...++..+.++....+
T Consensus       160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            2333333 234556777776666655443322 1   12345567777777776655

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.11  E-value=0.38  Score=48.50  Aligned_cols=252  Identities=12%  Similarity=0.119  Sum_probs=121.5

Q ss_pred             HhHhHHHHHhccCC-cHHHHHHHHHHHHccccc--cchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH
Q 007842          318 QHILPCVKELSSDS-SQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       318 ~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  394 (587)
                      ..++..+..++... +...-..+...+..+..+  ++.+. ...++..+.....-.  +....+-+++..+++....   
T Consensus       175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g---  248 (464)
T PF11864_consen  175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG---  248 (464)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH---
Confidence            44445444443322 222234555555554332  23322 334445555443332  5666666777777653322   


Q ss_pred             HhhHHHHHHHHh--cC----CChHHHHHHHHHHHHHHHhhChhhh------HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842          395 SQSLLPAIVELA--ED----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (587)
Q Consensus       395 ~~~~l~~l~~~~--~~----~~~~vR~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                       ...+..+..++  .+    ++..+-..++..++.+.-..|...+      ...++|.+...++.++..|=...+..+..
T Consensus       249 -~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~  327 (464)
T PF11864_consen  249 -HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR  327 (464)
T ss_pred             -HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence             23344444444  22    3444555667777776544322111      12478888888887777776667777666


Q ss_pred             HH-HHhChH-----HH-hhhhHHHHHhhccC---Cc------hhHHHHHHHH---HHHhhc---ccChHHHHhhHHHHHH
Q 007842          463 LA-EEFGPE-----WA-MQHITPQVLEMINN---PH------YLYRMTILRA---ISLLAP---VMGSEITCSRLLPVVI  520 (587)
Q Consensus       463 l~-~~~~~~-----~~-~~~l~~~l~~~l~d---~~------~~~R~~a~~~---l~~l~~---~~~~~~~~~~il~~l~  520 (587)
                      +. ..++..     |. .-.+++.+.+....   ..      ..++......   +..+.+   ..|+   ...++..+.
T Consensus       328 ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~---~~~~~~f~~  404 (464)
T PF11864_consen  328 LLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP---KDKLFNFFE  404 (464)
T ss_pred             HHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc---HHHHHHHHH
Confidence            66 444433     10 01122222222211   11      1222222222   222222   1222   355666666


Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHH
Q 007842          521 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT-EDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       521 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l  580 (587)
                      +....-.+......+..=...+.- ....+.......+..+. .+...+||..|..++..|
T Consensus       405 ~~~~~lp~s~~~~vl~~~~~~~~P-s~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~  464 (464)
T PF11864_consen  405 RVHSYLPDSSALLVLFYEERSCSP-SNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI  464 (464)
T ss_pred             HHhccCCHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence            655554444333333111111111 22356666677777754 788889999999888653

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.022  Score=51.25  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=115.5

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHH
Q 007842          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  357 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  357 (587)
                      ..+.-....+.+.+|+.....+..+..+.....+.  ..+..++..+.+-++++...|-.+++.++..+.+..+.... +
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~  166 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-Q  166 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            34554556678888998888888888877755432  33455666777777888888888888888888877654322 1


Q ss_pred             hHHHHHHHhh---cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----
Q 007842          358 QLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----  430 (587)
Q Consensus       358 ~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~----  430 (587)
                      .+-+.+..++   .+.+.-||..|-.+|..+.....+..    +++.+.....+.++++|..+...+......+|.    
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~  242 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL  242 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence            2223333333   34567899999999998888776543    455555567788889988887777776665552    


Q ss_pred             hhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      .++...+.+.+..-..|.-+.+|.+|-..+.
T Consensus       243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~  273 (334)
T KOG2933|consen  243 LQGSCDLSRAAQEQGSDKLPELREAARFVRL  273 (334)
T ss_pred             hHhHHHHHHHHHhhhcccccccccchhHHHH
Confidence            2233344555555566666666655544333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.96  E-value=0.18  Score=48.59  Aligned_cols=140  Identities=17%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc------CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh
Q 007842          294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  367 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  367 (587)
                      ..-|.+|...+..+++..+... .+.+...+...+.      ..+|+-+.+|+..++.++........          ..
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~----------Gv  293 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS----------GV  293 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT----------B-
T ss_pred             CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC----------Cc
Confidence            5678889999999988765442 1233333333332      45799999999888887654311000          00


Q ss_pred             cCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC
Q 007842          368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  447 (587)
Q Consensus       368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  447 (587)
                      .+.++         +-.+.     +.+...++|.+. --.+..+-+|..+++.+..+...++++... .++|.+.+++.+
T Consensus       294 t~~~~---------~v~v~-----~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-~~~~~l~~~L~~  357 (370)
T PF08506_consen  294 TQTNE---------LVDVV-----DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-QIFPLLVNHLQS  357 (370)
T ss_dssp             S-B-T---------TS-HH-----HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-HHHHHHHHHTTS
T ss_pred             ccccc---------cccHH-----HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHhCC
Confidence            00000         00000     111223344443 222344556666666666666665554433 366666666666


Q ss_pred             CchHHHHHHHHHH
Q 007842          448 KVYSIRDAAANNL  460 (587)
Q Consensus       448 ~~~~vr~~a~~~l  460 (587)
                      ++.-|+..|+.++
T Consensus       358 ~~~vv~tyAA~~i  370 (370)
T PF08506_consen  358 SSYVVHTYAAIAI  370 (370)
T ss_dssp             S-HHHHHHHHHHH
T ss_pred             CCcchhhhhhhhC
Confidence            6666666666553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.59  Score=47.76  Aligned_cols=454  Identities=13%  Similarity=0.127  Sum_probs=230.0

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhhH-HhhHHHHHHHHhcCCCCcchhhHHhhhH-hhcCCCChHHHHHHHHHHHHh-----
Q 007842           99 ETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVKRLAAGEWFTARVSACGLFH-IAYPSAPDILKTELRSIYTQL-----  171 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~l~~~~~~~~r~~a~~~l~-~~~~~~~~~~~~~l~~~l~~l-----  171 (587)
                      ++.+-...+++++.....++-.-+ .+..++++..+..  ....|.+||..+- ...++.+|..+-.++..+.+.     
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg  283 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG  283 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence            677777777777777766554322 3346666666555  4567888887554 455667665555555554211     


Q ss_pred             --cCC--CChHHHHHHHHhHHHHHH-------hhcc-------ch---hhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          172 --CQD--DMPMVRRSAASNLGKFAA-------TVEP-------AH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       172 --~~d--~~~~vr~~~~~~l~~l~~-------~~~~-------~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                        ..|  .++.+-......+...+-       .+..       +.   ....+.|.+.+.+.+++++.-......+....
T Consensus       284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl  363 (980)
T KOG2021|consen  284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL  363 (980)
T ss_pred             hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence              112  344444433333322211       1100       11   11225666777777776654433333332222


Q ss_pred             hhc---C---h---hhhhhchHHHHHHhccC------Cc----------HHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 007842          231 KLL---E---P---QDCVAHILPVIVNFSQD------KS----------WRVRYMVANQLYELCEAVGPEPTRMDLVPAY  285 (587)
Q Consensus       231 ~~~---~---~---~~~~~~l~~~l~~~~~d------~~----------~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l  285 (587)
                      ..+   +   .   ....+.+...+++++-|      .+          .++|...-.....++. +.++.....+-..+
T Consensus       364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~-idpsl~l~~Ir~sl  442 (980)
T KOG2021|consen  364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVV-IDPSLFLNNIRQSL  442 (980)
T ss_pred             HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence            111   1   1   11122233444444422      11          2355544333333332 22222222222223


Q ss_pred             HH---hcCCChHHHHHHHHHhHHHHHhhhCHH------------HHHHhHhHHHH--HhccCCcHHHHHHHHHHHHcccc
Q 007842          286 VR---LLRDNEAEVRIAAAGKVTKFCRILNPE------------LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAP  348 (587)
Q Consensus       286 ~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~i~~~l~--~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                      ..   ..+.++|..-+.|+..+..+++.....            ......++.+.  ..+..+++.|.-...+.+.....
T Consensus       443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k  522 (980)
T KOG2021|consen  443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK  522 (980)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence            22   234567888899999999999876432            22233444443  34567788888888888777665


Q ss_pred             ccchhH-HHHhHHHHHH--HhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChH-----------
Q 007842          349 LLGKDA-TIEQLLPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWR-----------  412 (587)
Q Consensus       349 ~~~~~~-~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~-----------  412 (587)
                      .+..+. ..+.++..++  ..+.+.+..||..+...+.++.+.+.+.  .+.+.++..+.+++..+-+.           
T Consensus       523 ff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f  602 (980)
T KOG2021|consen  523 FFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF  602 (980)
T ss_pred             HHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence            554322 2222222222  2345678999999999999998876543  23344444444444221111           


Q ss_pred             -HHHHHHHHHHHHHHh---------------hChhhhHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHHHHhChH--
Q 007842          413 -VRLAIIEYIPLLASQ---------------LGVGFFDDKLGALCMQWLQDKVYSIRDA----AANNLKRLAEEFGPE--  470 (587)
Q Consensus       413 -vR~~~~~~l~~l~~~---------------~~~~~~~~~l~~~l~~~l~d~~~~vr~~----a~~~l~~l~~~~~~~--  470 (587)
                       -..-+.+.+|-+...               +.+......+.+....+-+|.+..|..+    ++.+++.+.+.+...  
T Consensus       603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlv  682 (980)
T KOG2021|consen  603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLV  682 (980)
T ss_pred             cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCc
Confidence             011122222222110               1111111223333334446766666544    445566666543211  


Q ss_pred             ------H------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842          471 ------W------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       471 ------~------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l  538 (587)
                            +      ..+.+++.+..+.+  ...+|-+.-..++.+...+|++ +.+.+=..+..+++|.++.--.-.+..+
T Consensus       683 t~~qvg~~~vf~~~ldvil~~ls~f~k--~E~iRsavrft~hRmI~~lg~~-vlPfipklie~lL~s~d~kEmvdfl~fl  759 (980)
T KOG2021|consen  683 TENQVGNMVVFSNILDVILVTLSFFNK--FENIRSAVRFTFHRMIPILGNK-VLPFIPKLIELLLSSTDLKEMVDFLGFL  759 (980)
T ss_pred             chhcccHHHHHHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHhcchh-hhcchHHHHHHHHhcCCHHHHHHHHHHH
Confidence                  0      12445555444332  4558888888888888888875 3343333444567787777666677777


Q ss_pred             HHhhhhhchH--HHHhhHHHHH
Q 007842          539 QSLIPIVDQS--MVEKTIRPCL  558 (587)
Q Consensus       539 ~~l~~~~~~~--~~~~~i~~~l  558 (587)
                      .+++..+..+  .+.++.+|.+
T Consensus       760 sQLihkfk~~~~~ilnqmlppl  781 (980)
T KOG2021|consen  760 SQLIHKFKTDCYQILNQMLPPL  781 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776554  2334444433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.11  Score=48.23  Aligned_cols=173  Identities=13%  Similarity=0.043  Sum_probs=99.4

Q ss_pred             CChHHHHHHHHHHHHHHHhhChh--hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhh
Q 007842          409 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM  483 (587)
Q Consensus       409 ~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~  483 (587)
                      .+.+-|..++..+..++..+...  ...-..++.++..+++.+..+|..|+.+++..++.....   .+....++.+..+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            34566666777777766655321  111122333444788888888888888888888755432   1223456666665


Q ss_pred             cc-CCchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH--HHHhhHH
Q 007842          484 IN-NPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIR  555 (587)
Q Consensus       484 l~-d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~  555 (587)
                      +. +.+..+|..|+.+++.+.....+..   ..-.=+..+.+.+++  .+...+..++..+..+...-..+  ......+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            44 4456678888888888887554421   111224456666666  45566667777777766542221  2222222


Q ss_pred             -HHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          556 -PCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       556 -~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                       ..+..+..--+.+++..+..++-.+-
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence             33333556666677777666654443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.80  E-value=0.59  Score=45.72  Aligned_cols=193  Identities=11%  Similarity=0.072  Sum_probs=96.1

Q ss_pred             HHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHH
Q 007842          183 AASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA  262 (587)
Q Consensus       183 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~  262 (587)
                      .+.++-.+......+....+++.++..++.+....++.     +...+. ..+    ....|++. +++.+++.+...++
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~-~~~----~~~~~fl~-lL~~~d~~i~~~a~  122 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDAL-LKK----KTWEPFFN-LLNRQDQFIVHMSF  122 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhh-ccc----cchHHHHH-HHcCCchhHHHHHH
Confidence            34444445555556677777888887777775433322     111111 011    11223333 55567888999999


Q ss_pred             HHHHHHHHHhCCCcccc----chHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCC--cH
Q 007842          263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDS--SQ  333 (587)
Q Consensus       263 ~~l~~~~~~~~~~~~~~----~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~  333 (587)
                      ..++.++..-. .....    .+.+.+...++.. +...+..++.++..+...-.-.  .+....++.+..++...  +.
T Consensus       123 ~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~  201 (429)
T cd00256         123 SILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF  201 (429)
T ss_pred             HHHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence            99888875322 21112    2334445555432 3555666677777766532211  12233445555544431  34


Q ss_pred             HHHHHHHHHHHcccccc-chhH-HHHhHHHHHHHhhcCCC-hHHHHHHHHhhhhhhh
Q 007842          334 HVRSALASVIMGMAPLL-GKDA-TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ  387 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~-~~~~-~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  387 (587)
                      +....++-++..+.=.- +.+. ....++|.+...+++.. +.|-+-++.++.++..
T Consensus       202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            55665555554442110 1111 12346777777776543 3344444555555554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.79  E-value=0.71  Score=46.60  Aligned_cols=143  Identities=12%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             hHHHHHHhcCC-ChHHHHHHHHHhHHHHHh--hhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHH
Q 007842          281 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  357 (587)
Q Consensus       281 l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  357 (587)
                      ++..+...+.. .....-..++..+..+..  .++.+.+ ..++..+.....-.  .....+-+++.+++..-.    ..
T Consensus       177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g~  249 (464)
T PF11864_consen  177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----GH  249 (464)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----HH
Confidence            44444444322 223333677777777765  3333332 44444444432222  344444445555543211    12


Q ss_pred             hHHHHHHHhhc------CCChHHHHHHHHhhhhhhhhhchhhH----H--hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007842          358 QLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLL----S--QSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       358 ~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~----~--~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~  425 (587)
                      ..+..+...+.      .++..+-.+|+..+..+.-..+.+.+    .  ..++|.+...++..+.++-..++..+..+.
T Consensus       250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            23344455552      23456667888888887655533321    1  238899999888888887777777777776


Q ss_pred             -HhhCh
Q 007842          426 -SQLGV  430 (587)
Q Consensus       426 -~~~~~  430 (587)
                       +.++.
T Consensus       330 ~~~~~~  335 (464)
T PF11864_consen  330 DGKYGR  335 (464)
T ss_pred             hHhhhh
Confidence             44443

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.63  E-value=0.082  Score=56.76  Aligned_cols=172  Identities=12%  Similarity=0.048  Sum_probs=105.9

Q ss_pred             hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhhHHHHHHHHHHhcCCCc
Q 007842          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKV  449 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~  449 (587)
                      ..||++.+++|+.+......+.+ ...+..+.+++.-++|++|..-+..+........  -..+...+++.+...+.|.+
T Consensus       143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~  221 (1549)
T KOG0392|consen  143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD  221 (1549)
T ss_pred             hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            57999999999999887766544 5567777788888899999876665555443211  11334567788888999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChH------HHhhhhHHHHHhhc--cCCchhHHHHHHHHHHHh-hcccChHHH-HhhHHHHH
Q 007842          450 YSIRDAAANNLKRLAEEFGPE------WAMQHITPQVLEMI--NNPHYLYRMTILRAISLL-APVMGSEIT-CSRLLPVV  519 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l-~~~~~~~~~-~~~il~~l  519 (587)
                      ..||..|+..+..+...+...      .....++..+.++.  ..+...+|.-..+.+... ...++..+. ...+.|.+
T Consensus       222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~  301 (1549)
T KOG0392|consen  222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL  301 (1549)
T ss_pred             hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence            999999999887776654111      11122333333221  111222333222222211 111111111 13566777


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ...+.+.-..+|.+++..+..+.+.
T Consensus       302 ~p~l~~~i~sv~~a~l~~l~~lle~  326 (1549)
T KOG0392|consen  302 WPFLRHTISSVRRAALETLAMLLEA  326 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777778888999999998887654

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.61  E-value=0.54  Score=50.54  Aligned_cols=130  Identities=17%  Similarity=0.125  Sum_probs=97.2

Q ss_pred             hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hC-hHHHhhhhHHHHH
Q 007842          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FG-PEWAMQHITPQVL  481 (587)
Q Consensus       406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~-~~~~~~~l~~~l~  481 (587)
                      ..|-.+.+|..+++.++.+.+.++.-++....+..+-..|.|.+..||...+.+|..+...   .+ -+.|.+.+=..++
T Consensus       296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV  375 (1048)
T KOG2011|consen  296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV  375 (1048)
T ss_pred             cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            3678899999999999999999887777777888888889999999999999999999875   11 1335566666777


Q ss_pred             hhc-cCCchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842          482 EMI-NNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       482 ~~l-~d~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  540 (587)
                      +|. .|-+..||..++..+.....  .+.     ..-+..+..++-|.++.++.++..-+..
T Consensus       376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~-----d~di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  376 EMADRDRNVSVRAVGLVLCLLLSSSGLLS-----DKDILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHhcccccC-----hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence            776 56677888888776665532  222     2234456666677888888888776643

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=1.1  Score=46.20  Aligned_cols=193  Identities=14%  Similarity=0.068  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhc-CCCCh
Q 007842           99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMP  177 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~  177 (587)
                      =..=|+.|+.+|..+++.+.......-+.|++..+-.|                  +.+++..+..+..+..+. ++++|
T Consensus        36 L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D------------------~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   36 LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD------------------YMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc------------------cCCHHHHHHHHHHHHHHHhcCcch
Confidence            34558999999999999887766556666666544332                  334556666666666554 34444


Q ss_pred             HHHHHHHHhHHHHHHhhccc-hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh-----hhhchHHHHHHhcc
Q 007842          178 MVRRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-----CVAHILPVIVNFSQ  251 (587)
Q Consensus       178 ~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~  251 (587)
                      +|-...- .-..+...+.+. .-.+..+..+.......+..||..+++.+.++...-|.+.     ..+.-+..+..++.
T Consensus        98 ~v~dds~-qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDST-QSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccch-hhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence            4432211 111111111110 1124456677777777888999999999999988777642     12334556778888


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHhh
Q 007842          252 DKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRI  310 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~  310 (587)
                      |....+|..++-.|..+.+..+.-.   .......-+...+..    ...-|-.-|+..+..+.+.
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~  242 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN  242 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence            9999999999999988876543210   011122222222322    2245667777777776653

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=96.59  E-value=2.6  Score=50.40  Aligned_cols=523  Identities=17%  Similarity=0.199  Sum_probs=258.0

Q ss_pred             HHHHhcCccHHHHHHHhhcHHHHHHhhCh------Hhh--hhhhhhhhhh--ccCCcHHHHHHHHHHhc-cccccCCCcc
Q 007842           14 LIDELKNDDIQLRLNSIRRLSTIARALGE------ERT--RKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGVE   82 (587)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~------~~~--~~~l~p~l~~--~~~~~~~v~~~~~~~l~-~l~~~~~~~~   82 (587)
                      +-..+..+|.+.|..+...+..+....--      ...  .+.++..+..  ..+.++.+|..+...+. ++.+...   
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la---  562 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA---  562 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc---
Confidence            44456778888999887766654322211      111  3333443333  33556666666655554 2222212   


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh----cCCCC--cchhh--HHhhhHhhcC
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWF--TARVS--ACGLFHIAYP  154 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~~~~~--~~r~~--a~~~l~~~~~  154 (587)
                       .+..+-.+...+.++.-.++..+...++.++..-+     .+++|.+....    +.-.+  ..|..  +...++.+..
T Consensus       563 -Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~  636 (2341)
T KOG0891|consen  563 -QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII  636 (2341)
T ss_pred             -CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence             12334445556678888888888888887765432     33444443211    11111  01111  1111111111


Q ss_pred             C---CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHH
Q 007842          155 S---APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAA  228 (587)
Q Consensus       155 ~---~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~  228 (587)
                      .   ....+...++..+...+.+++..+-..+..+++.++...+.  ....+.+++.+...+.|.. ..-|.++...++.
T Consensus       637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~  716 (2341)
T KOG0891|consen  637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQ  716 (2341)
T ss_pred             HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence            0   01113334445555667788889999999999999998873  2344577777777777654 4567788888888


Q ss_pred             HhhhcC----hhhhhhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHH--HHHh-cCCChHHH-HH-
Q 007842          229 LGKLLE----PQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA--YVRL-LRDNEAEV-RI-  298 (587)
Q Consensus       229 l~~~~~----~~~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~--l~~~-l~d~~~~v-r~-  298 (587)
                      +...-+    +....+.++..+.... ......+|..+++.+|..+..-+   ........  ..+. .....+.. +. 
T Consensus       717 l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~---~~~~~~~~~~~~~~~~~~~k~~~~~~~  793 (2341)
T KOG0891|consen  717 LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP---YKHKVTEGTSASKISSEQIKSDIDISL  793 (2341)
T ss_pred             hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch---hHHHHHhhhhhHhhhhccccccchHHH
Confidence            766432    2223444555554433 34456789999999885443211   00000000  0111 11111100 00 


Q ss_pred             HHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHH-HHHHHHHccccccc--hhHHHHhHHHHHHHhhcCCChHHH
Q 007842          299 AAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS-ALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVR  375 (587)
Q Consensus       299 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~-~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr  375 (587)
                      .-.......     .+.+.-..+..+...+.|+...... ....+...+....|  ...+.+.++|.+........+..+
T Consensus       794 ~~~~~~~~~-----~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~  868 (2341)
T KOG0891|consen  794 LESGVNPSN-----DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLR  868 (2341)
T ss_pred             HHhhhhhhh-----hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchh
Confidence            000000000     1111111122334444554332222 22222222222222  233456667766665554444444


Q ss_pred             HHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHH---HHHHHHHHHHHHhhChhhh--HHHHHHHHHHhcCCCch
Q 007842          376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY  450 (587)
Q Consensus       376 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR---~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~  450 (587)
                      ......+....-......  ..+++.+...+.+-+|...   ..+...+..+...++.++.  .+...+..+........
T Consensus       869 ~f~~~q~~~~~~~~~~h~--~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s  946 (2341)
T KOG0891|consen  869 EFYFQQLTSLVAIVRQHI--RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKS  946 (2341)
T ss_pred             HHHHHhhhhhhhccchhH--hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccccc
Confidence            444433333222221111  1234444444444443222   2233334444444433321  11222222222222222


Q ss_pred             HHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842          451 SIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  526 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~  526 (587)
                      ..|......+..+.. .|.  +....-+.|.+++++.++  ....|..+...++.+........+...+...+.+.+...
T Consensus       947 ~~~~~~~~~~~~~~~-~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s 1025 (2341)
T KOG0891|consen  947 KDRVVSRKVLQSLQK-FGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS 1025 (2341)
T ss_pred             chHHHHHHhhHHHHh-cCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            223333333332222 222  223345677888888887  578999999999999987777667777777778888777


Q ss_pred             ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHH
Q 007842          527 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV  559 (587)
Q Consensus       527 ~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~  559 (587)
                       +.++......++.+....+...  ..+.|.+.
T Consensus      1026 -~el~~~~~~~l~~l~~~~~~~~--~i~~p~~~ 1055 (2341)
T KOG0891|consen 1026 -PELRDVIMDTLIALVKQLGKDF--AIFIPMVN 1055 (2341)
T ss_pred             -hhHHHHHHHHHHHHHHhhcCce--eehHHHHH
Confidence             9999999999999888766542  23444444

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.57  Score=42.51  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             CCCChhHHHHHHHHHHHhhhhh-chHH-HHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007842          524 KDRVPNIKFNVAKVLQSLIPIV-DQSM-VEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~~~-~~~~-~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .++++.+|...+++|-.++..- |.+. ....+.|++..+ ...+|+++|....+..+.+..
T Consensus       254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            3679999999999999988543 4443 345789999996 567889998877776666544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.55  E-value=0.55  Score=42.28  Aligned_cols=194  Identities=16%  Similarity=0.152  Sum_probs=112.6

Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHH--
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ--  443 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~--  443 (587)
                      .-+..+++.....+++|..++..-.  .....++..+..+.+.+....+..+...+..+.+.-.. .| +.+-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f-~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF-PFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH-HHHHHHHHHHH
Confidence            5566678888888888887776431  22345566666666666666666666666666554221 11 333333322  


Q ss_pred             -------hcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc-cCCchhHHHHHHHHHHHhhcc--cChHHHHh
Q 007842          444 -------WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPV--MGSEITCS  513 (587)
Q Consensus       444 -------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~~R~~a~~~l~~l~~~--~~~~~~~~  513 (587)
                             .-.+..++...+...++..++...+.  ....+++.+...+ .+.+...+..+++++..+.+.  ++....+.
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~  162 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK  162 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence                   11345566777766777777765444  3456788888888 677888999999999998853  22222233


Q ss_pred             hHHHHHHhhcCCCChhHHHHHHHHHHHhhhh----hchHHHHhhHHHHHHHhcCCCCcc
Q 007842          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPI----VDQSMVEKTIRPCLVELTEDPDVD  568 (587)
Q Consensus       514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~i~~~l~~l~~d~d~~  568 (587)
                      .+.+.+   -.+..+.+-...+..+..+...    -..+.+...++..+-++....+.+
T Consensus       163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence            333333   2334444444444433332211    122356677888888887777743

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.54  E-value=0.037  Score=46.88  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHH
Q 007842          101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR  180 (587)
Q Consensus       101 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr  180 (587)
                      .||..|+.+|..+++..++..+..++--++    -+.+...                   ...-.+++.-++.|+++.+|
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~ll----P~~~~~~-------------------~~~~~sLlt~il~Dp~~kvR   57 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALL----PDSVLQG-------------------RPATPSLLTCILKDPSPKVR   57 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHC----CCCCCcC-------------------CCCCcchhHHHHcCCchhHH
Confidence            379999999999999977765444333222    1110000                   00112344456789999999


Q ss_pred             HHHHHhHHHHHHhh
Q 007842          181 RSAASNLGKFAATV  194 (587)
Q Consensus       181 ~~~~~~l~~l~~~~  194 (587)
                      .+++.++..+....
T Consensus        58 ~aA~~~l~~lL~gs   71 (182)
T PF13251_consen   58 AAAASALAALLEGS   71 (182)
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999999988764

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.46  E-value=0.71  Score=43.32  Aligned_cols=57  Identities=9%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC------CchhHHHHHHHHHHHhhcccC
Q 007842          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN------PHYLYRMTILRAISLLAPVMG  507 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------~~~~~R~~a~~~l~~l~~~~~  507 (587)
                      ...+...+++|+++......+ ...+.+|.+.+++..      ..+......++|+-.+..+.|
T Consensus       255 e~rkL~lLK~lAEMss~ttaq-~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg  317 (460)
T KOG2213|consen  255 EERKLDLLKALAEMSSYTTAQ-AARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG  317 (460)
T ss_pred             HHHHHHHHHHHHHhCccchHH-HHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence            455666777777777654222 345566666665432      234445555566555554444

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.42  E-value=0.84  Score=42.86  Aligned_cols=230  Identities=16%  Similarity=0.129  Sum_probs=110.9

Q ss_pred             hhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHH
Q 007842          143 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA  222 (587)
Q Consensus       143 ~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a  222 (587)
                      ..|...++.++++++ +...+.+..-..+|.|.+..||+.|+.-|..++..    +..+.+.+.+.++++       .+.
T Consensus        42 ~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn-------k~s  109 (460)
T KOG2213|consen   42 RLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN-------KAS  109 (460)
T ss_pred             HHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH-------HHH
Confidence            345566666666663 34455666667788888888888888888888764    344555555555554       111


Q ss_pred             HHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHH
Q 007842          223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI  298 (587)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  298 (587)
                      +..|-                   .+... .+..+|..+...|..=...++.    ......++..+...+.|-..+--.
T Consensus       110 l~~Lf-------------------~~~~~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~  169 (460)
T KOG2213|consen  110 LTGLF-------------------GQIEV-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFT  169 (460)
T ss_pred             HHHHH-------------------hhhhh-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHH
Confidence            11111                   11111 1334444444433322211111    122345666666666665554444


Q ss_pred             HHHHhHHHHHhh---hCHHHHHHhHhHHHHHh-----ccCCcHHHHHHHHHHH----HccccccchhHHHHhHHHHHHHh
Q 007842          299 AAAGKVTKFCRI---LNPELAIQHILPCVKEL-----SSDSSQHVRSALASVI----MGMAPLLGKDATIEQLLPIFLSL  366 (587)
Q Consensus       299 ~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~-----~~d~~~~vr~~a~~~l----~~l~~~~~~~~~~~~l~~~l~~~  366 (587)
                      ..+..|+.+...   -|++.. .++......+     +.-++..+-.-.+.++    .-++...+...+..++-..++..
T Consensus       170 lfm~~L~~lk~~~~k~~~a~l-qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~  248 (460)
T KOG2213|consen  170 LFMDILASLKSLQTKAGEARL-QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH  248 (460)
T ss_pred             HHHHHHHhhhcccCCCCHHHH-HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc
Confidence            444445443322   222221 2333333222     2223333433344443    33444333333333222222111


Q ss_pred             hcC-CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842          367 LKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (587)
Q Consensus       367 l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~  406 (587)
                      --| ...+.+...+++|+.++..-..+.. ...+|.+.+++
T Consensus       249 ~fdkl~e~rkL~lLK~lAEMss~ttaq~a-~q~Lpsi~elL  288 (460)
T KOG2213|consen  249 HFDKLTEERKLDLLKALAEMSSYTTAQAA-RQMLPSIVELL  288 (460)
T ss_pred             ccccchHHHHHHHHHHHHHhCccchHHHH-HHHHHHHHHHH
Confidence            112 2256777788888888876644332 45666666654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.42  E-value=0.042  Score=40.65  Aligned_cols=70  Identities=24%  Similarity=0.243  Sum_probs=55.0

Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhc-cchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      ......++|+.+-||..+...|..++..-. .....+.++.++...++|+++.|...|++++..++...+.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            344455678888899998888888888765 3445677888888888999999999999999998887653

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.35  E-value=0.098  Score=44.00  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHh
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l  502 (587)
                      +.++|+++..+.+....-|-.|...+..+...-+.+.   ...++++.+...++..+..+..+++.++..+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L  107 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL  107 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            4556666666666666666666666666665522221   1233444444445555555555555555555

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.31  E-value=1.1  Score=43.27  Aligned_cols=222  Identities=16%  Similarity=0.108  Sum_probs=122.4

Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhh-hhchHHHHHH-hccC-CcHHHHHHHHHHHHHHHHHh-CCCcc
Q 007842          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC-VAHILPVIVN-FSQD-KSWRVRYMVANQLYELCEAV-GPEPT  277 (587)
Q Consensus       203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~-~~~d-~~~~vR~~a~~~l~~~~~~~-~~~~~  277 (587)
                      +.+-+..++-+++..||.++..++..+...... ... .-++--++.. +..| ++..-|..|.+.+-.+...- |.+..
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            344444344344488999998888876543221 111 1112222222 2233 34567899999999888763 33445


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-----
Q 007842          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-----  352 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-----  352 (587)
                      +..++..++...+++++..|..|+..+.+++-.-+.-.....-+..+.+.+.|....+-..++.++-.+......     
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            667888899999999999999999999998865433222233445555555555545656666655554433211     


Q ss_pred             -hHHHHhHHHHHHHh----hcCCCh-HHHHHHHHhhhhhhhhh------chhhHHhhHHHHHHHHhcCCChHHHHHHHHH
Q 007842          353 -DATIEQLLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEY  420 (587)
Q Consensus       353 -~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~------~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~  420 (587)
                       ..-.+.++..+...    .++... +--..+..++..+.+.-      +.+.+  ..+..+...+.-++..+|..++..
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHH
Confidence             11123333333333    222221 23334444555444321      11111  234555566677777888887777


Q ss_pred             HHHHHH
Q 007842          421 IPLLAS  426 (587)
Q Consensus       421 l~~l~~  426 (587)
                      +-.+..
T Consensus       264 l~dllr  269 (371)
T PF14664_consen  264 LFDLLR  269 (371)
T ss_pred             HHHHHC
Confidence            666554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.65  Score=43.27  Aligned_cols=176  Identities=13%  Similarity=0.052  Sum_probs=104.7

Q ss_pred             ChHHHHHHHHHhHHHHHhhhCHHH--HHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--H-HHHhHHHHHHHh
Q 007842          292 NEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--A-TIEQLLPIFLSL  366 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~  366 (587)
                      .+.+-+..|+..|..+++.++...  .....+..+...+++.+..+|..|++.++..++.-++.  . +-...++.+...
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            346667778888888887776542  11223444445778888888888888888877655431  1 112244555555


Q ss_pred             hc-CCChHHHHHHHHhhhhhhhhhchh--hH-HhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhC--hhhhHHHHH
Q 007842          367 LK-DEFPDVRLNIISKLDQVNQVIGID--LL-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLG--VGFFDDKLG  438 (587)
Q Consensus       367 l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~  438 (587)
                      +. +.+..+|..|+.+++.++......  .+ .-.-...+...+++  .+.+.+..++..++.+...-.  .+.......
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            44 556788899999999988765322  11 01113445555665  556666777777777765432  111222222


Q ss_pred             -HHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          439 -ALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       439 -~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                       ..+..+...-+++++++++.++-.....+
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence             22344556667778888877776666543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.20  E-value=0.033  Score=46.48  Aligned_cols=140  Identities=17%  Similarity=0.179  Sum_probs=71.9

Q ss_pred             hhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHhh-h
Q 007842          239 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRI-L  311 (587)
Q Consensus       239 ~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~-~  311 (587)
                      .+.+++.+.+++.. .+|.+|+.+++.+|.++.. .+     .-.........     +.+........   ...... .
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP-----~~~k~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~   78 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL-DP-----YKHKSIQKSLDSKSSENSNDESTDISL---PMMGISPS   78 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-Cc-----HHHhcccccCCccccccccccchhhHH---hhccCCCc
Confidence            45566666666543 4688888888888876642 10     00000000000     11111111111   000000 1


Q ss_pred             CHHHHHHhHhHHHHHhccCCcH-HHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842          312 NPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       312 ~~~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  387 (587)
                      .++.+...++..+.+.++|++- .-+.+++.++..+....|.  -.+.++++|.+...++..++..|+..++.|+.+..
T Consensus        79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            2334444556666677777653 3333455555555544432  34677788888888887767777777777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.17  E-value=0.58  Score=45.14  Aligned_cols=58  Identities=14%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      ++.+.......+.+++.-...++ ...++.++..+.+.++|..+.+|+..+..++....
T Consensus        33 KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   33 KESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            35677788888888888777763 33457799999999999988899999999888765

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.13  E-value=0.16  Score=49.03  Aligned_cols=89  Identities=16%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             HHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHH
Q 007842           24 QLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVR  103 (587)
Q Consensus        24 ~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr  103 (587)
                      +.|.-.++.|..+...--.....+.+.|++.+  +.++..+..+..+++.....+ +.+....++..+.+.+.+..+.+|
T Consensus         2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSK--ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Confidence            45666666565443211123333455565543  456677777777776654444 235567788889999999999999


Q ss_pred             HHHHHHHHHHHh
Q 007842          104 DKAVESLCRIGS  115 (587)
Q Consensus       104 ~~a~~~l~~l~~  115 (587)
                      +.++.+++....
T Consensus        79 ~~w~~~~~~~~~   90 (339)
T PF12074_consen   79 RAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.13  E-value=0.06  Score=44.99  Aligned_cols=148  Identities=13%  Similarity=0.097  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-ccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842          434 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEIT  511 (587)
Q Consensus       434 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~~R~~a~~~l~~l~~~~~~~~~  511 (587)
                      .+.+++.++++++. .++.+|..+++++|.+.. +.+..+. .+....-.. ..+.+...........+. . ....+++
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~ee~y   83 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGI-S-PSSEEYY   83 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhccC-C-CchHHHH
Confidence            45677777776643 458888888888887653 2221111 000000000 011111111211111110 0 0233445


Q ss_pred             HhhHHHHHHhhcCCCCh-hHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          512 CSRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      ...++..+.+.++|++- .-+..++.++..+....+..  .+.+.++|.+.......+...|....+-|+.+..+++
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk  160 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK  160 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence            56667778888888743 34556788888877665554  5677888888886665555888887777777766653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.08  E-value=1.4  Score=43.54  Aligned_cols=209  Identities=10%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-H-HHHHhHhHH
Q 007842          250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LAIQHILPC  323 (587)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~  323 (587)
                      ..|++|.--..+.+.+..+....+.+.    ....++-.++.++.++|+.-|......+..+-..+.. . .+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            456788888888888888877654433    3446788889999999999999988888887654432 1 222333333


Q ss_pred             HHHhccC-CcHHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCC-hHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          324 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       324 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      +.+.+.+ ....--..+.+.++.+...+.   ++.....+...+..+.+... .........++..+...-  ..+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence            4433332 222233344444444444332   22233333333444444332 122223333333332211  0111222


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH---HHHHHhcCCCchHHHHHHHHHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG---ALCMQWLQDKVYSIRDAAANNL  460 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l  460 (587)
                      +..+...---.+..-....+..++.+...++++.+.....   ..+-..+++++..|-+.|+..+
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w  321 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW  321 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3333333233344444455666666666665555543333   3334456677777766666554

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.00  E-value=0.21  Score=42.05  Aligned_cols=70  Identities=16%  Similarity=0.050  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      ..++|.+.+-+.+...-.|..+.+.+..+...-+.+...   +.+++.+...+...+.+|..+++.+|..++.
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            678999999888888888888888888888874444432   4566667788899999999999999999943

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.97  E-value=0.11  Score=38.55  Aligned_cols=68  Identities=21%  Similarity=0.192  Sum_probs=41.9

Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccC-hHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      ..+..++|+...+|..++..+.++...-. .....+.++..+...++|+++-|=.++++++..++...+
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            34444566666666666666666665444 222345666666666777777777777777777665543

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.92  E-value=0.22  Score=47.73  Aligned_cols=132  Identities=20%  Similarity=0.328  Sum_probs=76.0

Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHHh--hChhhhHHH
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDK  436 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~-------~~~vR~~~~~~l~~l~~~--~~~~~~~~~  436 (587)
                      .+.+.+...|..++..|..   .-|.    ..++|.+..++.+.       +...-...++.+..+...  +..+.+...
T Consensus       186 a~~~~~~~~r~~aL~sL~t---D~gl----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~  258 (343)
T cd08050         186 ALVGSNEEKRREALQSLRT---DPGL----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ  258 (343)
T ss_pred             HHhCCCHHHHHHHHHHhcc---CCCc----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence            3334455566665555443   2222    34455555444321       233322333333333321  223344455


Q ss_pred             HHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc--hhHHHHHHHHHHHh
Q 007842          437 LGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLL  502 (587)
Q Consensus       437 l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~~R~~a~~~l~~l  502 (587)
                      ++|.++.++          .++.|.+|..|+..++.+++.++...  ....++..+.+.+.|+.  ...+..|+..+..+
T Consensus       259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l  338 (343)
T cd08050         259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL  338 (343)
T ss_pred             HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence            777777655          35779999999999999999887753  45666666666666653  34578888888877


Q ss_pred             hc
Q 007842          503 AP  504 (587)
Q Consensus       503 ~~  504 (587)
                      +.
T Consensus       339 G~  340 (343)
T cd08050         339 GP  340 (343)
T ss_pred             Cc
Confidence            64

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=2.6  Score=43.64  Aligned_cols=169  Identities=17%  Similarity=0.246  Sum_probs=109.2

Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHh--ChH
Q 007842          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF--GPE  470 (587)
Q Consensus       394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~--~~~  470 (587)
                      +.+.++|.+. .-.+...-+|..++-.++..+..--+....+.+-..+.+++.|. +.-||.+++.++..++...  .++
T Consensus       485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d  563 (978)
T KOG1993|consen  485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED  563 (978)
T ss_pred             HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence            3445566655 11223344678888888888765444455566677788899998 7889999999999988743  333


Q ss_pred             HH---hhhhHHHHHhhccC-CchhHHHHHHHHHHHhhcccChHH--H---HhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          471 WA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--T---CSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       471 ~~---~~~l~~~l~~~l~d-~~~~~R~~a~~~l~~l~~~~~~~~--~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      .|   .+.+...+..++.. .....|...+..++.+....+.-.  +   .-.++|.+.+-.+ +.+-.|.+.+.++.++
T Consensus       564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~l  642 (978)
T KOG1993|consen  564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNL  642 (978)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHH
Confidence            22   23344444444432 245678888888888876555421  1   2345566666444 6888999999999999


Q ss_pred             hhhhchH--HHHhhHHHHHHHhcCCC
Q 007842          542 IPIVDQS--MVEKTIRPCLVELTEDP  565 (587)
Q Consensus       542 ~~~~~~~--~~~~~i~~~l~~l~~d~  565 (587)
                      ...+|.+  .+...+.|.+. +..|+
T Consensus       643 V~alg~qS~~~~~fL~pVIe-l~~D~  667 (978)
T KOG1993|consen  643 VNALGAQSFEFYPFLYPVIE-LSTDP  667 (978)
T ss_pred             HHHhccCCccchHHHHHHHH-HhcCC
Confidence            9988776  34455666654 44554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.86  E-value=1  Score=42.84  Aligned_cols=170  Identities=18%  Similarity=0.176  Sum_probs=90.3

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHH--HhChHHHhh
Q 007842          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD----KVYSIRDAAANNLKRLAE--EFGPEWAMQ  474 (587)
Q Consensus       403 ~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~--~~~~~~~~~  474 (587)
                      ..++..+++.++..++..+..+...-+.....  ...++.++.++.+    ++.+++..++.+++.+.+  .+..-+...
T Consensus       111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            33667778888888888888776654322221  2445555555543    555677788888888864  222233345


Q ss_pred             hhHHHHHhhc-----cC--CchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhh
Q 007842          475 HITPQVLEMI-----NN--PHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       475 ~l~~~l~~~l-----~d--~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~  544 (587)
                      ..++.+...+     .+  .+.+....++.++=-+.-  ..-.......++|.+.+.+++ ....|-..++.++.++...
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            5566666655     12  234555555554443321  111122234477777777654 3445555677777777765


Q ss_pred             hch----HHHHhhHHHHHHHhcCC--CCccHHHH
Q 007842          545 VDQ----SMVEKTIRPCLVELTED--PDVDVRFF  572 (587)
Q Consensus       545 ~~~----~~~~~~i~~~l~~l~~d--~d~~Vr~~  572 (587)
                      ...    ......+++.+..+...  .|+++..-
T Consensus       271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            442    34556677888777543  35565443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=95.79  E-value=2.6  Score=42.90  Aligned_cols=150  Identities=18%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHH--------Hhhh------CCchhHHHHHHH
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE--------DLTQ------DDQDSVRLLAVE  224 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~--------~l~~------d~~~~vr~~a~~  224 (587)
                      .+.+.+++++..-..+.+..+|..++..++++.+.++-.. -..++.++.        ..++      +.++.+-..++.
T Consensus       242 ~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l-~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~  320 (993)
T COG5234         242 IYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNL-AESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAIL  320 (993)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhccccc-HHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence            3677888888888888999999999999999998875321 111222221        1111      233444444443


Q ss_pred             HHHHHhhhcChhhhhhchHHHHHHhccCC--------cHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHH-hcCCC
Q 007842          225 GCAALGKLLEPQDCVAHILPVIVNFSQDK--------SWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVR-LLRDN  292 (587)
Q Consensus       225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--------~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~-~l~d~  292 (587)
                      .++ ++...+-+-..-.+.|++.+.++-.        ...+|.++.-.+-.+.....+...+.   .+...++. .+-|+
T Consensus       321 ~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp  399 (993)
T COG5234         321 FFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP  399 (993)
T ss_pred             HHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence            333 4433322211112555555544322        22456665555544443322222211   24444444 66799


Q ss_pred             hHHHHHHHHHhHHHHHhh
Q 007842          293 EAEVRIAAAGKVTKFCRI  310 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~  310 (587)
                      +-.+|.+|..++-++...
T Consensus       400 el~vRr~a~Aal~E~iGR  417 (993)
T COG5234         400 ELNVRRAATAALFEVIGR  417 (993)
T ss_pred             hhhhhhHHHHHHHHHhcc
Confidence            999999999887765443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=2.9  Score=43.03  Aligned_cols=143  Identities=8%  Similarity=0.068  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 007842          396 QSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (587)
Q Consensus       396 ~~~l~~l~~~~~-----~---~~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      +.+++.+.+.++     +   .+.+-...++..+..+...+.     ...+...+++.+...++++.--.|..|+..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            556666666551     2   345666677777777766332     122334567777778899999999999999998


Q ss_pred             HHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC--hH--HHHhhHHHHHHhhcCCCChhHHHHHHHHH
Q 007842          463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SE--ITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       463 l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~--~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l  538 (587)
                      +...+.......++.......+++.+..++..|.-++..+.....  ..  ...+..+..++.+.++-+-.+=..+++.+
T Consensus       487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f  566 (970)
T COG5656         487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF  566 (970)
T ss_pred             HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence            866665554556667777777888888899999999998875322  11  12344555666666655555555555444

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=95.57  E-value=2.6  Score=41.34  Aligned_cols=139  Identities=12%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             hcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh-hhh-hhchHH
Q 007842          171 LCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP-QDC-VAHILP  244 (587)
Q Consensus       171 l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~  244 (587)
                      +++.++..+...++..+..++..-..   ....+.+.+.+...++.. +......++.++..+...-.- ..+ ....++
T Consensus       109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~  188 (429)
T cd00256         109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVP  188 (429)
T ss_pred             HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHH
Confidence            55567788888888888888754221   112233444444444332 344555667777766543221 111 122344


Q ss_pred             HHHHhccC-C-cHHHHHHHHHHHHHHHHH--hCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 007842          245 VIVNFSQD-K-SWRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR  309 (587)
Q Consensus       245 ~l~~~~~d-~-~~~vR~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  309 (587)
                      .+...++. . +......++-++-.+.-.  .-.......++|.+...+++.. ..|-+.++.++..+..
T Consensus       189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            44444332 1 334455554444333211  0011122457777777776543 3333334444555444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.50  E-value=2.9  Score=41.35  Aligned_cols=254  Identities=9%  Similarity=0.066  Sum_probs=131.4

Q ss_pred             ccCCcHHHHHHHHHHHHccccccchhH----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHH
Q 007842          328 SSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPA  401 (587)
Q Consensus       328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~  401 (587)
                      ..+++|.-...+.+.+..+....+.+.    +...++-.++.++.++++.-|......+..+......  ..+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            345666655555555555544433222    3445666677788888888888877777776654422  1223334444


Q ss_pred             HHHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHhChHHHhhhh
Q 007842          402 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSI-RDAAANNLKRLAEEFGPEWAMQHI  476 (587)
Q Consensus       402 l~~~~~~-~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~l  476 (587)
                      +.+++.+ ....--..+++.++.+.+.+.   ++.....+...++.+.+.+.... -..-..++..++..-. . ....+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~-l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-S-LAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-G-GHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHH
Confidence            4444432 233333445666666666543   22222333333444444443222 3344444444443211 1 22333


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH---HhhHHHHHHhhcCCCChhHHHHHHHHHHHh--hhhhc--hHH
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVD--QSM  549 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l--~~~~~--~~~  549 (587)
                      +..++..-=-.+..-....+.-+..+...+++..+   ...++..+.+++++++..|-..|+..+.+=  ...+.  ...
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~  336 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV  336 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence            44444332234556666777888888887776554   345666777788999999988887766431  21111  112


Q ss_pred             HHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHh
Q 007842          550 VEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       550 ~~~~i~~~l~~l-~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      ....+.|.|.+. .+.=...||..|..++..+.++
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            334455555553 2344678999999999988764

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=95.47  E-value=3.5  Score=42.10  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=45.3

Q ss_pred             HHHhhhhHHHHHhhccCC----chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          470 EWAMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       470 ~~~~~~l~~~l~~~l~d~----~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                      +.+.+.++..+.+...|.    ...+|.-|++.+..+...  ..   ...-+.+.+.+-|+.+.+|.-+-++..++.
T Consensus       686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D~---~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--DS---SGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--cc---cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            346677777777776654    356888888888776421  10   122346777888899999977777776653

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=4.8  Score=43.76  Aligned_cols=130  Identities=15%  Similarity=0.129  Sum_probs=94.8

Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cC-hHHHHhhHH
Q 007842          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MG-SEITCSRLL  516 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~-~~~~~~~il  516 (587)
                      +++...|-.+.+|.-++..||.++..++.-|+.+..+.++-=++.|.+..||..++.+|..+...   .+ -+.+..++-
T Consensus       292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK  371 (1048)
T KOG2011|consen  292 FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK  371 (1048)
T ss_pred             eeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            34455899999999999999999999999888888888887789999999999999999999875   22 133445555


Q ss_pred             HHHHhhc-CCCChhHHHHHHHHHHHhhh--hhchHHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 007842          517 PVVINAS-KDRVPNIKFNVAKVLQSLIP--IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ  575 (587)
Q Consensus       517 ~~l~~~l-~d~~~~vR~~~~~~l~~l~~--~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~  575 (587)
                      .-++.+. .|-+..||...+..+.....  .+..    +.+. .+..+.-|..+.++..|..
T Consensus       372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d----~di~-~Vy~Li~d~~r~~~~aa~~  428 (1048)
T KOG2011|consen  372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSD----KDIL-IVYSLIYDSNRRVAVAAGE  428 (1048)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHhcccccCh----hHHH-HHHHHHhccCcchHHHHHH
Confidence            5555555 66677888877777765532  2222    2233 3345667888888777654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=95.23  E-value=3  Score=39.94  Aligned_cols=379  Identities=10%  Similarity=0.056  Sum_probs=183.0

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc-------hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (587)
                      ..+++.+.+..++++.+|-..++.++|+++....+.       .-...++..+...+..+++.--+-..-..+.+.+..-
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            456777888888889999999999999988653221       0112344555555554444322222222222222221


Q ss_pred             h-hhh-----hhchHHHHHHhcc--CCcHHHHHHHHHHHHHH----HHHhCCCccccchHHHHHHhcCC-ChHHHHHHHH
Q 007842          235 P-QDC-----VAHILPVIVNFSQ--DKSWRVRYMVANQLYEL----CEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAA  301 (587)
Q Consensus       235 ~-~~~-----~~~l~~~l~~~~~--d~~~~vR~~a~~~l~~~----~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~  301 (587)
                      . +..     .-.+++.+.....  -.+...-....-.++.+    ++.+.+-.....+.-.+.+++.. -+++.+..++
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            1 111     1113333322221  01111111111111111    11111111111232333333322 2355666666


Q ss_pred             HhHHHHHhhh------CHHHHHHhHhHHHHHhccCCcHH----HHHHHHHHHHccccccchhHH-----HHhHHHHHHHh
Q 007842          302 GKVTKFCRIL------NPELAIQHILPCVKELSSDSSQH----VRSALASVIMGMAPLLGKDAT-----IEQLLPIFLSL  366 (587)
Q Consensus       302 ~~l~~l~~~~------~~~~~~~~i~~~l~~~~~d~~~~----vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~  366 (587)
                      +.+...++.-      -.....+.++..+.+.-.+.+..    .-..+++....+.  .|.+..     .++++..+...
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll--tGDeSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL--TGDESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh--cCchHHHHHhcCcHHHHHHHHH
Confidence            6666655521      11122333444444332222211    1111222211111  133321     23477888888


Q ss_pred             hcCCChHHHHHHHHhhhhhhhhhc------hhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhh-ChhhhH-HHH
Q 007842          367 LKDEFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKL  437 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~-~~l  437 (587)
                      +.+.+.+....+.-+++.+++.-.      .+.+...++..+.+ --.|.+-++..+++.++..+.--. .+..+. ..+
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv  403 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV  403 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence            998889999999999999876432      12233333443332 224566777777877777664221 222222 224


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH------HhhhhHHHHHhhccCCchh-HHHHHHHHHHHhhcccChHH
Q 007842          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQVLEMINNPHYL-YRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~-~R~~a~~~l~~l~~~~~~~~  510 (587)
                      ...++..++-..+.|...-..++..+..  +.+.      -...++..+.+..+.+++. +--.+.+.+..+.++...+.
T Consensus       404 teaIL~~lk~~~ppv~fkllgTlrM~~d--~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd  481 (604)
T KOG4500|consen  404 TEAILLQLKLASPPVTFKLLGTLRMIRD--SQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD  481 (604)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHh--chHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence            4456666677777787776666665543  1111      1256778888888888765 55555555555554321111


Q ss_pred             H-----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          511 T-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       511 ~-----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      +     ....+...+.++...+-+....++-++..+...
T Consensus       482 v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~  520 (604)
T KOG4500|consen  482 VILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK  520 (604)
T ss_pred             hHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence            0     122344555555566667777777776665543

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=95.19  E-value=0.39  Score=41.64  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             HHhhcCCChHHHHHHHHhhhhhhhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHH
Q 007842          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  441 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  441 (587)
                      ...++-.....-..++..++.+...+|...  ....++..+.++-.+++...|..+=.+++...+.+|++.+.+ ++|+-
T Consensus         6 e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLn   84 (198)
T PF08161_consen    6 ESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLN   84 (198)
T ss_pred             HHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCC
Confidence            334443444445555556666665555432  223334444455566677788888888888888888877654 34432


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 007842          442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (587)
Q Consensus       442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  481 (587)
                      +.. .+....-|.-.+-.|..-.....-.+|.+.++|...
T Consensus        85 l~~-~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~  123 (198)
T PF08161_consen   85 LDN-ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLAR  123 (198)
T ss_pred             ccC-CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHH
Confidence            211 222223333333333333333333455566666544

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=95.11  E-value=2  Score=37.29  Aligned_cols=164  Identities=15%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhH
Q 007842          414 RLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY  491 (587)
Q Consensus       414 R~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~  491 (587)
                      -..++..++.+...+|...  +...++..+-.+-.+++...|..+-.+++..++..|++.+.+ ++|.-.+. .+....-
T Consensus        17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~   94 (198)
T PF08161_consen   17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPG   94 (198)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcc
Confidence            3345555666666665431  223344445555677778999999999999999999986543 34422211 2223344


Q ss_pred             HHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC------CCChhHHHHHHHHH-HHhhhhhch-----HHHH---hhHHH
Q 007842          492 RMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVDQ-----SMVE---KTIRP  556 (587)
Q Consensus       492 R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~vR~~~~~~l-~~l~~~~~~-----~~~~---~~i~~  556 (587)
                      |.-.+-.+..-.....-.++.++++|....+-+      .....+.....+++ .++..-++.     .+..   ..+-+
T Consensus        95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~  174 (198)
T PF08161_consen   95 RAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAK  174 (198)
T ss_pred             cchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHH
Confidence            555555555555555556677888886655421      12223333333333 222222211     1222   45566


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHH
Q 007842          557 CLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       557 ~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                      .|.+.+.|. ++.|...++||..+
T Consensus       175 ~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  175 LLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHhcC-cchHHHHHHHHHHH
Confidence            666666664 89999999999876

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.09  E-value=0.11  Score=43.26  Aligned_cols=129  Identities=17%  Similarity=0.242  Sum_probs=78.6

Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHh
Q 007842           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL  171 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l  171 (587)
                      ...+.+|..+.-++.++. ....+...+.+.+++.....+........++..+..+++..++-     ..+.+.+.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            456788999999998886 44445567778888888887665567777888888888876432     234556666666


Q ss_pred             cC--CCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhh-CCchh-HHHHHHHHH
Q 007842          172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGC  226 (587)
Q Consensus       172 ~~--d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~-d~~~~-vr~~a~~~l  226 (587)
                      +.  .++..+...+++.+..-+..-.- ........+++..+.+ ++++. +|..|+-+|
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence            65  56666777776666654432111 2234445556666663 33333 454444333

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=5.4  Score=42.02  Aligned_cols=358  Identities=12%  Similarity=0.070  Sum_probs=188.2

Q ss_pred             HHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc-----hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc---
Q 007842          179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS---  250 (587)
Q Consensus       179 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---  250 (587)
                      -|+....++....+.++ +...+.+...+.++..|.+     ..+-.+++..+..+++.++...  +.-+|-+...+   
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence            36666666666666665 5556667777777776554     4556678888888888887642  12234333332   


Q ss_pred             --cCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHH
Q 007842          251 --QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVK  325 (587)
Q Consensus       251 --~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~  325 (587)
                        +-.++..-..+...+|..+..+++.. ..+..+|.+.+.+..++.  -..+...+..+++.+..+  .+...++....
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~  594 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY  594 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence              22367778888999999999887643 345678888888864433  344566688888877554  33344444444


Q ss_pred             HhccCC--cHHHHHHHHHHHHccccccchhHHHHh---HHHHHHH----hhcC--CChHHHHHHH---Hhhhhhhhhhch
Q 007842          326 ELSSDS--SQHVRSALASVIMGMAPLLGKDATIEQ---LLPIFLS----LLKD--EFPDVRLNII---SKLDQVNQVIGI  391 (587)
Q Consensus       326 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~----~l~d--~~~~vr~~a~---~~l~~l~~~~~~  391 (587)
                      ..+...  ....|..+..++|.+.+...++....+   ++..+..    .+..  +.++-+...+   .++..+...+..
T Consensus       595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~  674 (982)
T KOG2022|consen  595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN  674 (982)
T ss_pred             HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            444332  356788888888888776655443222   2222222    2221  1222222222   223333222110


Q ss_pred             ----------------------hhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhhHH----HHHHHHHH
Q 007842          392 ----------------------DLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQ  443 (587)
Q Consensus       392 ----------------------~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~  443 (587)
                                            -.+...++|.+...+.  -.+..+-.+++.....-.+..+.+ |..    .+.+.+..
T Consensus       675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r  753 (982)
T KOG2022|consen  675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR  753 (982)
T ss_pred             CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence                                  0233456666665443  233444455444444333444444 433    33444444


Q ss_pred             hcCCCchHHHHHHHHHHHHHH--HHhChHHH-------hhhhHHHHHhhcc----CCchhHHHHHHHHHHHhhcccCh--
Q 007842          444 WLQDKVYSIRDAAANNLKRLA--EEFGPEWA-------MQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGS--  508 (587)
Q Consensus       444 ~l~d~~~~vr~~a~~~l~~l~--~~~~~~~~-------~~~l~~~l~~~l~----d~~~~~R~~a~~~l~~l~~~~~~--  508 (587)
                      +...+..     +...+...+  ..++.+..       ....+...+.+++    ..++.+-...+.++..+.+..+.  
T Consensus       754 ~~~~~~a-----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~  828 (982)
T KOG2022|consen  754 FLTSCLA-----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFL  828 (982)
T ss_pred             hccchHH-----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcc
Confidence            3332211     111111111  11111110       0111222222222    22445555566666666553321  


Q ss_pred             ----HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          509 ----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       509 ----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                          ..+...+++.-..+++.+.+-.-.++++.+..+..+.+.
T Consensus       829 ~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  829 EPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence                224566777888888888888777888888887766544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.99  E-value=0.73  Score=42.92  Aligned_cols=132  Identities=15%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---Hh-----hhhHHHHHhhcc--------CCchhHHHHHHHH
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM-----QHITPQVLEMIN--------NPHYLYRMTILRA  498 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~~R~~a~~~  498 (587)
                      +-++|.++.++.|.+..+|..++.++..+........   +.     +-+.+.+...+.        +....+=..+..+
T Consensus       118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            4567777888888888888888888888777554332   11     222233333332        3445566667777


Q ss_pred             HHHhhccc---Ch----HHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCC
Q 007842          499 ISLLAPVM---GS----EIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP  565 (587)
Q Consensus       499 l~~l~~~~---~~----~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~  565 (587)
                      +-.+....   +.    ...    .+.++..+....+-+.+.+|...++.+..++..+|..  .+.+.++|.+.+.+.++
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            77775421   11    111    1222222222222346899999999999999988876  56788999999988877


Q ss_pred             C
Q 007842          566 D  566 (587)
Q Consensus       566 d  566 (587)
                      +
T Consensus       278 f  278 (282)
T PF10521_consen  278 F  278 (282)
T ss_pred             C
Confidence            5

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=94.90  E-value=4  Score=39.61  Aligned_cols=226  Identities=15%  Similarity=0.045  Sum_probs=122.4

Q ss_pred             hhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHH-HHhcCC-ChHHHHHHHHHhHHHHHhhh-
Q 007842          238 CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAY-VRLLRD-NEAEVRIAAAGKVTKFCRIL-  311 (587)
Q Consensus       238 ~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l-~~~l~d-~~~~vr~~a~~~l~~l~~~~-  311 (587)
                      .+....+.+.. +++|+ ..||.++.+.+-.+......  .....++-..+ ..+-+| ....-|..|++.+..+.+.- 
T Consensus        22 ~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~  100 (371)
T PF14664_consen   22 VLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK  100 (371)
T ss_pred             hHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence            34445555554 44444 99999999998776642110  00000111111 222233 34567899999999888763 


Q ss_pred             CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch
Q 007842          312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (587)
Q Consensus       312 ~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  391 (587)
                      |.+.+...++..+.....+++.+.|..+.+.+.+++-.-+.-.....-+..+.+.+.|+..++....+.++-.+...-..
T Consensus       101 ~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t  180 (371)
T PF14664_consen  101 GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT  180 (371)
T ss_pred             CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence            33344456778888888899999999999999988754333222223345556666665445555555554444332111


Q ss_pred             ------hhHHhhHHHHHHHHh---cCCCh--HHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHH
Q 007842          392 ------DLLSQSLLPAIVELA---EDRHW--RVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRD  454 (587)
Q Consensus       392 ------~~~~~~~l~~l~~~~---~~~~~--~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~  454 (587)
                            ..-.+.++..+.+.-   ...+.  ..-..+..++..+.+.+.      .+.+  .-+..++..+.-+...+|.
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHH
Confidence                  111123333333331   11111  122234455555555442      1112  2344466667778888888


Q ss_pred             HHHHHHHHHHHH
Q 007842          455 AAANNLKRLAEE  466 (587)
Q Consensus       455 ~a~~~l~~l~~~  466 (587)
                      ..+..+-.+...
T Consensus       259 ~Ildll~dllri  270 (371)
T PF14664_consen  259 AILDLLFDLLRI  270 (371)
T ss_pred             HHHHHHHHHHCC
Confidence            888777776653

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=5.1  Score=40.76  Aligned_cols=271  Identities=16%  Similarity=0.066  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC
Q 007842          291 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  370 (587)
                      .+++.++.+++-.++-....+.++  .+..+-.+...+++++..+|.+++--++-.......+..    ...+...+.|.
T Consensus       426 s~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V----~~lL~Pi~~d~  499 (878)
T KOG2005|consen  426 SDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEV----LELLSPIMFDT  499 (878)
T ss_pred             cCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHH----HHHHhHHhcCC
Confidence            334444444444444333222221  133455666677777888888887776654433333333    33455556665


Q ss_pred             ChH--HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC
Q 007842          371 FPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (587)
Q Consensus       371 ~~~--vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  446 (587)
                      +..  |...+.-+++.+.--.-.+.....++..+.+-.+  -.+...|..++..   -.-.+|.....+.+...    +.
T Consensus       500 ~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL---~llflgkqe~~d~~~e~----~~  572 (878)
T KOG2005|consen  500 KSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGL---ALLFLGKQESVDAVVET----IK  572 (878)
T ss_pred             CCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHH---HHHHhcccchHHHHHHH----HH
Confidence            544  5544555555443211123333455555544322  2334444443221   11122322111112211    11


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccCCch-hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc
Q 007842          447 DKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  523 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l  523 (587)
                      .-...+|..+-..+ ..|...|....  .+.  ..+.....+... .-.+.-...+|.-.-.+|.+.-.+..+-.+-.++
T Consensus       573 ~i~~~~~~~~~~lv-~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l  649 (878)
T KOG2005|consen  573 AIEGPIRKHESILV-KSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLL  649 (878)
T ss_pred             HhhhHHHHHHHHHH-HHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            11222333222222 22222222111  011  111111221110 0011112223332233444433345556666666


Q ss_pred             CCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          524 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .-.++.+|.+.--+++.++...+.    -.++..|.+++.|.|.+|-++|.-|++-++
T Consensus       650 ~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiG  703 (878)
T KOG2005|consen  650 HYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG  703 (878)
T ss_pred             HcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence            777888888888888887765332    257888888889999999888888887554

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=94.77  E-value=4.9  Score=40.08  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc
Q 007842          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  390 (587)
                      .-+-+|+.+++.++..+...-+  ...+.+-|.+...=++++..++..++.++..++....
T Consensus       287 ~~~~~V~Aa~A~A~v~l~~lP~--KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~  345 (441)
T PF12054_consen  287 SRDVRVLAAAASALVALGGLPK--KLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV  345 (441)
T ss_pred             HHHHHHHHHHHHHHHHhccCCC--CccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence            3456788888888777654422  2344555655555567789999999999999886553

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=94.77  E-value=0.12  Score=38.39  Aligned_cols=69  Identities=23%  Similarity=0.361  Sum_probs=50.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842          446 QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~  518 (587)
                      .++.|.+|..|+..++.+++.++...  ....+...+.+.+.|+  +...+..|+..+..++    ++.+...++|.
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~   88 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPN   88 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccC
Confidence            36789999999999999999888643  5567777777777766  4668888888888874    34344445554

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.76  E-value=4.9  Score=39.97  Aligned_cols=189  Identities=11%  Similarity=0.138  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhcc---c---hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 007842          160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      ....+..++...+.++ +|..-....++++.+.....+   +   .+.+.++|.+...++.+-.+.---+.+.++.+.+.
T Consensus        68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~  147 (435)
T PF03378_consen   68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL  147 (435)
T ss_dssp             HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445555665555544 677788888888888877543   1   46788899998888776544444556777777766


Q ss_pred             cCh----hhhhhchHHHHH-HhccCCcHHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHh
Q 007842          233 LEP----QDCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (587)
Q Consensus       233 ~~~----~~~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (587)
                      .+.    +.+. .++|.+. ..+-+..-.| -+.++.+..+...-+..    .....++..+.+++.++..+  ..+.+.
T Consensus       148 ~~~~~~p~~y~-~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~L  223 (435)
T PF03378_consen  148 RPSSPLPDAYK-QLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDL  223 (435)
T ss_dssp             SS--S--TTTG-GGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHH
T ss_pred             CCCCCCcHHHH-HHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHH
Confidence            552    2222 3333332 2222211122 23344555444433322    22345778888888765433  447788


Q ss_pred             HHHHHhhhCHHH---HHHhHhHHHHHhcc-CCcHHHHHHHHHHHHccccccch
Q 007842          304 VTKFCRILNPEL---AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK  352 (587)
Q Consensus       304 l~~l~~~~~~~~---~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      |..+...++.+.   +.+.++..+.+.++ .+.++.....+..++.++...|.
T Consensus       224 L~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~  276 (435)
T PF03378_consen  224 LESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP  276 (435)
T ss_dssp             HHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence            888888888763   44555555544443 45566666666555555444444

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.75  E-value=0.73  Score=44.18  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=80.4

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc-------hhHHHHHHHHHHHHhhh--c
Q 007842          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-------DSVRLLAVEGCAALGKL--L  233 (587)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-------~~vr~~a~~~l~~l~~~--~  233 (587)
                      ..+.-+...+.+.+...|..+++.|.       .+.-...++|.+..++.+..       ...-....+...++...  +
T Consensus       178 ~yf~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l  250 (343)
T cd08050         178 LYFEEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL  250 (343)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence            33444444555566777777666544       33334556666666554431       12222223333333322  1


Q ss_pred             ChhhhhhchHHHHHHhc----------cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHH
Q 007842          234 EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIA  299 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~  299 (587)
                      .-+.+...++|.+..++          .+.+|.+|..|++.++.++..++...  ....+...+.+.+-|+.  .....+
T Consensus       251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG  330 (343)
T cd08050         251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG  330 (343)
T ss_pred             chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence            22445666777776654          35689999999999999999888642  22345555555555543  344788


Q ss_pred             HHHhHHHHH
Q 007842          300 AAGKVTKFC  308 (587)
Q Consensus       300 a~~~l~~l~  308 (587)
                      |+.+|..++
T Consensus       331 Ai~GL~~lG  339 (343)
T cd08050         331 AIVGLSALG  339 (343)
T ss_pred             HHHHHHHhC
Confidence            888887765

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=94.75  E-value=3.1  Score=41.70  Aligned_cols=146  Identities=13%  Similarity=-0.010  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH----H
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----I  510 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~----~  510 (587)
                      ..+...+.....|-++.+|..+...++..+..++.-++.-..+.+.-=++.|.+..+|....+.+..+....+..    .
T Consensus       274 dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~  353 (740)
T COG5537         274 DICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRR  353 (740)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            334455667778888889998888888888776655544444545445577888889999998888887654432    2


Q ss_pred             HHhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          511 TCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       511 ~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      +.+.+...++..+. |.+- ||.++++.+..+....-.+   ..-+-.+..+.-|..++-|....+++..+|+..
T Consensus       354 f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~  424 (740)
T COG5537         354 FVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICKID  424 (740)
T ss_pred             HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            34555555555443 4444 9999998888775432111   122334444567888887777888888887754

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.74  E-value=1.3  Score=37.41  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh---hhhHHHHHhhccCC-chhHHHHHHHHHHHhhcccChH---
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE---  509 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~---  509 (587)
                      +..-+..+++++++.-|..++..++..++..+.+.+.   ...+..+...++.+ ...++..++.++..+....+..   
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l  105 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL  105 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence            4444555556666666666666666665554444331   23334444444433 2345666666666665433221   


Q ss_pred             ---H---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          510 ---I---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       510 ---~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                         .   ..+.+++.+++++++  ......++.+|..+...++.
T Consensus       106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence               0   123445556665554  66677788888887776554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=6.2  Score=40.80  Aligned_cols=353  Identities=12%  Similarity=0.054  Sum_probs=186.4

Q ss_pred             hHHhhhHhhcCCCChHHHHHHHHHHHHhcC-----C---CChHHHHHHHHhHHHHHHhhccc-----hhhhHHHHHHHHh
Q 007842          144 SACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDL  210 (587)
Q Consensus       144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~l  210 (587)
                      ++...+..+..+-+++....+++++...++     +   +++.-..++...+..+.+.+...     .....+.+.+...
T Consensus       389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~  468 (970)
T COG5656         389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA  468 (970)
T ss_pred             HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence            344444344444445556677777766552     1   24556678888888887755432     2334455666666


Q ss_pred             hhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC-CccccchHHH---HH
Q 007842          211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPA---YV  286 (587)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~---l~  286 (587)
                      .+++.--.|..+++.+..+...+++......+.....+++++.+-.|+..|+-++..+..+-.- +....++.+.   +.
T Consensus       469 f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL  548 (970)
T COG5656         469 FRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL  548 (970)
T ss_pred             hcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence            7888888899999999999877877667777888888899999999999999999888765321 1112233333   34


Q ss_pred             HhcCCChHHHHHHHHHhHH-HHHhhhCHH--HHHHhHhH----HHHHhccCC---c---HHHHHHHHHHHHccccc---c
Q 007842          287 RLLRDNEAEVRIAAAGKVT-KFCRILNPE--LAIQHILP----CVKELSSDS---S---QHVRSALASVIMGMAPL---L  350 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~-~l~~~~~~~--~~~~~i~~----~l~~~~~d~---~---~~vr~~a~~~l~~l~~~---~  350 (587)
                      .+.++-+-++-..+++.+. .+.+.+.+-  .....+..    .-..+...+   +   .+-.-+|...+..+...   +
T Consensus       549 sLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSl  628 (970)
T COG5656         549 SLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSL  628 (970)
T ss_pred             HhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhc
Confidence            4445555555555555432 333333221  11112222    222222222   1   12233333333333221   1


Q ss_pred             chhH-----HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHH----HhcCCCh-HHHHHHHHH
Q 007842          351 GKDA-----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHW-RVRLAIIEY  420 (587)
Q Consensus       351 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~----~~~~~~~-~vR~~~~~~  420 (587)
                      .+..     ....+.|.+.-.++++-.++-..++..+....=  ..+.+ ..+++.+.+    +..++.. ..-..+..+
T Consensus       629 en~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf--~skeI-~pimwgi~Ell~~~l~~~~t~~y~ee~~~a  705 (970)
T COG5656         629 ENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF--MSKEI-EPIMWGIFELLLNLLIDEITAVYSEEVADA  705 (970)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH--HHHHh-hhhhhHHHHHHHhcccccchhhhHHHHHHH
Confidence            1111     223455666555666555666666555543221  11111 133333333    3344432 223334445


Q ss_pred             HHHHHHhhC-----hhhhHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhc------cCC
Q 007842          421 IPLLASQLG-----VGFFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNP  487 (587)
Q Consensus       421 l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~  487 (587)
                      +..+...-+     .+.+.+.+..+....+..++.  .=+..+++.+..++-.++.+. .++-+|.+.+..      .|.
T Consensus       706 l~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~vags~l~~~dE  784 (970)
T COG5656         706 LDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISVAGSGLKMIDE  784 (970)
T ss_pred             HHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHHHhhhhhcccc
Confidence            555544322     233445566777777766655  456677777777777776652 223344443332      233


Q ss_pred             chhHHHHHHHHHH
Q 007842          488 HYLYRMTILRAIS  500 (587)
Q Consensus       488 ~~~~R~~a~~~l~  500 (587)
                      ....+..+++.+-
T Consensus       785 lg~~sv~alelii  797 (970)
T COG5656         785 LGPASVYALELII  797 (970)
T ss_pred             ccchhhhHHHHHH
Confidence            3445555555443

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=3.2  Score=41.05  Aligned_cols=30  Identities=23%  Similarity=0.551  Sum_probs=25.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHh
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARA   39 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~   39 (587)
                      .++.|++.++.+|++.-..++..|.++.+.
T Consensus        48 dLellVeriqd~d~~l~~~sLn~Lkeviks   77 (881)
T COG5110          48 DLELLVERIQDPDIDLQNNSLNMLKEVIKS   77 (881)
T ss_pred             cHHHHHHHhhCCChHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999877543

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.53  E-value=0.73  Score=42.94  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             ChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCC
Q 007842          410 HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK  448 (587)
Q Consensus       410 ~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~  448 (587)
                      +.+++...++.+..+...+|...  +.+.++|.+...+.++
T Consensus       237 ~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  237 YPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             chhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            45666666666666666655433  2244555555555544

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=94.39  E-value=2.4  Score=42.18  Aligned_cols=57  Identities=18%  Similarity=0.153  Sum_probs=34.0

Q ss_pred             cchhhHHhhhHhhcCCCChHHHHHHHH-HHHHhcCCCChHHHHHHHHhHHHHHHhhcc
Q 007842          140 TARVSACGLFHIAYPSAPDILKTELRS-IYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (587)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~  196 (587)
                      ..|+.+...+|.+..+++.+....++. .|...+++++..-|..++..+..++.....
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~  159 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKE  159 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCcc
Confidence            445556666665555554444444443 566666777666677777777776666543

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.39  E-value=4.5  Score=37.91  Aligned_cols=179  Identities=16%  Similarity=0.121  Sum_probs=129.0

Q ss_pred             HHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchhhHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhH
Q 007842          359 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  434 (587)
Q Consensus       359 l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  434 (587)
                      +...+.+++.-. ...|...|++....+.+.+|.+.+.   ..+.|-+..++....-.||-..+..+....-.+|. ...
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~  133 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR  133 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence            334445555433 3579999999999999998877543   34466777777777888999999988887666666 333


Q ss_pred             HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC----
Q 007842          435 DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----  507 (587)
Q Consensus       435 ~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~----  507 (587)
                      +.   ++..++..+.|+..++-..+...+..+...+|.+.|-..++-.+.     .++.+|..|+..+..-.....    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence            33   444455667889999999999999999999998866555555444     367799999988887665444    


Q ss_pred             --hHH----H----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842          508 --SEI----T----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       508 --~~~----~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                        ...    .    ...++..+...++|++.-|+..++..|..-.+
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence              100    0    23456778888999999999999998877554

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.37  E-value=6  Score=39.33  Aligned_cols=193  Identities=13%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             hhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 007842          239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                      .+.+..++...++++ +|.--....++++.+.+...+.      .....++|.+...++.+-.+.--.+...+..+.+..
T Consensus        69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~  148 (435)
T PF03378_consen   69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR  148 (435)
T ss_dssp             HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344455555555444 5666777777777777764431      124468888888887665565666677777777765


Q ss_pred             CHHHHHHhHhHHHHHhccCCcHHHHH---HHHHHHHcccc----ccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          312 NPELAIQHILPCVKELSSDSSQHVRS---ALASVIMGMAP----LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       312 ~~~~~~~~i~~~l~~~~~d~~~~vr~---~a~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ......+.....+..++...-|+-|.   +....+..+..    .+......+.++.++.+++.+...+  ..+...|..
T Consensus       149 ~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~  226 (435)
T PF03378_consen  149 PSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLES  226 (435)
T ss_dssp             S--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHH
Confidence            52222122222222333333343221   11222222111    1111123456777788888876544  346677777


Q ss_pred             hhhhhchhhH---HhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhh
Q 007842          385 VNQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF  433 (587)
Q Consensus       385 l~~~~~~~~~---~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~  433 (587)
                      +...++.+.+   .+.++..+...+ +++.++.+...+..+..++...|++.+
T Consensus       227 iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l  279 (435)
T PF03378_consen  227 IVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL  279 (435)
T ss_dssp             HHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence            7777766543   233333333333 456677777777777766655565443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.36  E-value=0.93  Score=40.29  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~  269 (587)
                      ...+.+.....+++.-+|+.++..+......    ...+.++..+.....|++..||.+..-.|..++
T Consensus       120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~  183 (213)
T PF08713_consen  120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIG  183 (213)
T ss_dssp             GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            3445555555555555555554443322222    123344555555555555555555555555443

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.36  E-value=0.8  Score=45.13  Aligned_cols=140  Identities=14%  Similarity=0.213  Sum_probs=87.2

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch-hHHHHHHHHHH---HHhhhcCh---
Q 007842          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCA---ALGKLLEP---  235 (587)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~---~l~~~~~~---  235 (587)
                      .++.-+...+.+.++..|+.|+++|..       +.-...++|.|..++.+... ++-...+..|.   .+...+-+   
T Consensus       207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~  279 (576)
T KOG2549|consen  207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN  279 (576)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence            344445555556778899998887653       33345567777666655422 21111122222   22222111   


Q ss_pred             ---hhhhhchHHHHHHhc----------cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--hHHHHH
Q 007842          236 ---QDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEVRI  298 (587)
Q Consensus       236 ---~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~  298 (587)
                         +.+...++|-+..++          .|.+|.+|..|+..+..++..++...  ....+...+.+.+.|.  .+....
T Consensus       280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y  359 (576)
T KOG2549|consen  280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY  359 (576)
T ss_pred             cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence               345667777776544          46789999999999999999887532  2335666666666665  477888


Q ss_pred             HHHHhHHHHHh
Q 007842          299 AAAGKVTKFCR  309 (587)
Q Consensus       299 ~a~~~l~~l~~  309 (587)
                      +++..|..++.
T Consensus       360 Gai~gL~~lg~  370 (576)
T KOG2549|consen  360 GAIAGLSELGH  370 (576)
T ss_pred             hHHHHHHHhhh
Confidence            89988888765

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=94.28  E-value=7.9  Score=40.32  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCh-------HH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842          435 DKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (587)
Q Consensus       435 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~  505 (587)
                      +.++...+.++ ...+..+-++++.+|.++....+.       .. -.+..+|.+.+++...+..+-.+++.++.++...
T Consensus       517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            44555544444 446677889999999988753221       11 3467899999999999999999999999999865


Q ss_pred             cChH-HHHhhHHHHHHhhcCCCC------hhHHHHHHHHHHHhhh-hhch--HHHHhhHHHHHHHhcCCC-CccHHHHHH
Q 007842          506 MGSE-ITCSRLLPVVINASKDRV------PNIKFNVAKVLQSLIP-IVDQ--SMVEKTIRPCLVELTEDP-DVDVRFFAT  574 (587)
Q Consensus       506 ~~~~-~~~~~il~~l~~~l~d~~------~~vR~~~~~~l~~l~~-~~~~--~~~~~~i~~~l~~l~~d~-d~~Vr~~a~  574 (587)
                      .... .+..+.+|.+++.+-+..      +++-..++.+|-+++. .+..  +.+...=++.|..+.... ++.+-.+|.
T Consensus       597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs  676 (717)
T KOG1048|consen  597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS  676 (717)
T ss_pred             chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence            4433 345788999999987654      4667778888888773 3222  233333355555544333 335555666


Q ss_pred             HHHHHHHH
Q 007842          575 QAIQSIDH  582 (587)
Q Consensus       575 ~al~~l~~  582 (587)
                      ..|..+-+
T Consensus       677 ~vL~~lW~  684 (717)
T KOG1048|consen  677 SVLDVLWQ  684 (717)
T ss_pred             HHHHHHHH
Confidence            66655543

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.28  E-value=5.1  Score=38.10  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHhhC-hhhhHHHHHHHHHH-hcCC---CchHHHHH-HHHHHHHHHHHhChH------HHhhhhHHHH
Q 007842          413 VRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WLQD---KVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQV  480 (587)
Q Consensus       413 vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~l  480 (587)
                      +|...++.+..+..... .+.....++|.+.. .+.|   ..+..|.. .+.+++.++..++..      .+.+.++...
T Consensus        43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T  122 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT  122 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            45566666666665443 22233334444333 3332   44444543 455666666666553      1234455555


Q ss_pred             HhhccC---CchhHHHHHHHHHHHhhcccCh------HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch----
Q 007842          481 LEMINN---PHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----  547 (587)
Q Consensus       481 ~~~l~d---~~~~~R~~a~~~l~~l~~~~~~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----  547 (587)
                      ..++++   ..+..|......+..+...+-.      ......++..+.-.+++++.+|-..+++++..+...+..    
T Consensus       123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~  202 (319)
T PF08767_consen  123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE  202 (319)
T ss_dssp             HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred             HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            566544   2478999999999998875432      123456777788889999999999999999999887765    


Q ss_pred             ---HHHHhhHHHHHHH---hcCCCCcc
Q 007842          548 ---SMVEKTIRPCLVE---LTEDPDVD  568 (587)
Q Consensus       548 ---~~~~~~i~~~l~~---l~~d~d~~  568 (587)
                         ..+....++.+..   .+.|++..
T Consensus       203 ~~~~F~~~y~~~il~~if~vltD~~Hk  229 (319)
T PF08767_consen  203 FANQFYQQYYLDILQDIFSVLTDSDHK  229 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence               2344444555555   45677643

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.17  E-value=3.3  Score=41.08  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--chhHHHHHHHH
Q 007842          433 FDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRA  498 (587)
Q Consensus       433 ~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~~R~~a~~~  498 (587)
                      |...++|.++.++          .|+.|.+|.-|+..+..+++.++...  ....++..+.+.+.|.  .+.....++..
T Consensus       285 Ylh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~g  364 (576)
T KOG2549|consen  285 YLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAG  364 (576)
T ss_pred             HHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHH
Confidence            3344566655544          57889999999999999999888653  3456666666666665  57888889888


Q ss_pred             HHHhhc
Q 007842          499 ISLLAP  504 (587)
Q Consensus       499 l~~l~~  504 (587)
                      |..++.
T Consensus       365 L~~lg~  370 (576)
T KOG2549|consen  365 LSELGH  370 (576)
T ss_pred             HHHhhh
Confidence            888765

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.15  E-value=6.1  Score=38.57  Aligned_cols=270  Identities=12%  Similarity=0.089  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHhHHHHHhh------hCHHHHHHhHhHHHHHhccCCc--HHHHHHHHHHHH--ccccccchhHHHHhHHHH
Q 007842          293 EAEVRIAAAGKVTKFCRI------LNPELAIQHILPCVKELSSDSS--QHVRSALASVIM--GMAPLLGKDATIEQLLPI  362 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~------~~~~~~~~~i~~~l~~~~~d~~--~~vr~~a~~~l~--~l~~~~~~~~~~~~l~~~  362 (587)
                      +.++-..|++.++.+...      ++.+.. ..++......+.+++  -.+-......+.  ++...+-.....+.++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~-~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFA-SFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            556777888888876542      333321 223444444444332  233333333332  222211111122333333


Q ss_pred             HHHhhc-CCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHH
Q 007842          363 FLSLLK-DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (587)
Q Consensus       363 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  439 (587)
                      +..+-+ =.+..+-...+..+.++.......  ......+|.+...+-+....+|..++.....+...++++......+.
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~  217 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL  217 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            333322 234455556666666666544321  11234556666655566777787777776666666665433222222


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHH
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l  519 (587)
                      ..++.-..+. .+......-+..+...-+.......+...+..++.++.                 +..-.+.+..+...
T Consensus       218 ~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~  279 (372)
T PF12231_consen  218 EDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVP  279 (372)
T ss_pred             HHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHH
Confidence            1211111111 23333333333333221111122223333332222110                 12222457778888


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhhhchH------HHHhhHHHHHHHhcCCCCc----cHHHHHHHHHHHHH
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPDV----DVRFFATQAIQSID  581 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~d~----~Vr~~a~~al~~l~  581 (587)
                      ..+++++++.+|..|..+-..++-....+      ...-...|....+......    .++..+...+..+-
T Consensus       280 e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll  351 (372)
T PF12231_consen  280 EKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL  351 (372)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence            88999999999999999988877543322      2222345666666555555    67777777666554

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.15  E-value=3.9  Score=36.29  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccC-CcHHHHHHH-HHHHHHHHHHhCCCccc
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR  278 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a-~~~l~~~~~~~~~~~~~  278 (587)
                      +........+..++..+.|..|+..+.......+.     ..++.+...+.+ ++|.+-... ...++.+...      .
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~  118 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKLTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H  118 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence            34455566666667777777777666554333221     234445444443 456655555 4445555432      1


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      ....+.+.+.+++++.-+|.+++..+......    ...+.++..+...+.|++..||.+...+|..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            45777777777887777777777666554443    22356667777777888888888888888877754

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=94.07  E-value=5.9  Score=38.10  Aligned_cols=147  Identities=10%  Similarity=0.097  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhh-----ccCCchhHHHHHHHHHHHhhcccC
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAPVMG  507 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~-----l~d~~~~~R~~a~~~l~~l~~~~~  507 (587)
                      ++++..+..++.+++.+....+.-++|++++.-..  .+....++..+++.     -.|.|-.+..+++.++.+++.-..
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            44777888899999999999999999999874322  12334445554443     345678888999999999875333


Q ss_pred             h-HHH-HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HH-HHhhHHHHHHHhcCCCCcc-HHHHHHHHHHHH
Q 007842          508 S-EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SM-VEKTIRPCLVELTEDPDVD-VRFFATQAIQSI  580 (587)
Q Consensus       508 ~-~~~-~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~-~~~~i~~~l~~l~~d~d~~-Vr~~a~~al~~l  580 (587)
                      . ..+ ...+...++..++-..|.|....+.++.-+...-+.   +. -...++..|..-+..+|.. |---..+.+.-+
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l  473 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL  473 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence            2 222 233455666666667777776666666554432110   10 0124555566666666654 544444444333


Q ss_pred             H
Q 007842          581 D  581 (587)
Q Consensus       581 ~  581 (587)
                      -
T Consensus       474 I  474 (604)
T KOG4500|consen  474 I  474 (604)
T ss_pred             H
Confidence            3

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.98  E-value=21  Score=44.20  Aligned_cols=284  Identities=13%  Similarity=0.118  Sum_probs=167.1

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh----hCH------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc
Q 007842          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LNP------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                      +..+++.+...+..++..++.+...++..+...    +|.      -+..+.+++.+.+++.++.|+-|...+..+..+.
T Consensus       982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen  982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred             HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence            345789999999988999999988888766553    221      1345678888889999999999999999888887


Q ss_pred             cccchhHH---HHhHHHHHHHhhcCCChHHHH----HHHHhhhhhh----hhhchh----hHHhhHHHHHHHHhcCCChH
Q 007842          348 PLLGKDAT---IEQLLPIFLSLLKDEFPDVRL----NIISKLDQVN----QVIGID----LLSQSLLPAIVELAEDRHWR  412 (587)
Q Consensus       348 ~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~----~~~~~~----~~~~~~l~~l~~~~~~~~~~  412 (587)
                      ..++....   ...++..+...+.|...++-.    .+-..+..+.    ...+.+    .....++..+..-+.+++..
T Consensus      1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred             hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence            76663222   223444455555554433332    1112222221    111111    12233444455556788999


Q ss_pred             HHHHHHHHHHHHHHhhChhhh------HHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHh--h------hhH
Q 007842          413 VRLAIIEYIPLLASQLGVGFF------DDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--Q------HIT  477 (587)
Q Consensus       413 vR~~~~~~l~~l~~~~~~~~~------~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~------~l~  477 (587)
                      ||..+.+.+..++...|.+..      ++.+ .|.+..-+.--...+...-+.++.... ..+++.+.  +      ..+
T Consensus      1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHH
Confidence            999999999999887764421      1111 222222222233334443333333322 22332110  0      000


Q ss_pred             HH-----------HHhhccCC----chhHHHHHHHHHHHhhcccCh-----HHHHhhHHHHHHhhcCCCChhHHHHHHHH
Q 007842          478 PQ-----------VLEMINNP----HYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       478 ~~-----------l~~~l~d~----~~~~R~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~vR~~~~~~  537 (587)
                      ..           +......+    .-..|.+++..++........     ..+...++-.+.+.+..+.+++-..+..+
T Consensus      1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred             HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            00           11111111    234588899888887654332     23567888888888888899999888888


Q ss_pred             HHHhhh---hhchHHHHhhHHHHHHHhc
Q 007842          538 LQSLIP---IVDQSMVEKTIRPCLVELT  562 (587)
Q Consensus       538 l~~l~~---~~~~~~~~~~i~~~l~~l~  562 (587)
                      +.....   .++.+..+....|.+.++.
T Consensus      1301 l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred             HHhhhhccccccHHHHHhhHHHHHHhhh
Confidence            877654   3566667777778887763

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=9.8  Score=39.73  Aligned_cols=299  Identities=14%  Similarity=0.083  Sum_probs=169.7

Q ss_pred             cHHHHHHHhcCcc-HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-C-CcHHHHHHHHHHhccccccC-----CCc
Q 007842           10 PIAVLIDELKNDD-IQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYV-----GGV   81 (587)
Q Consensus        10 ~~~~l~~~l~s~~-~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~l~~~~-----~~~   81 (587)
                      .|+.|.+.+.+.. .+-|+.|++.|+.+++....+.....+-|++...- | .++++...+.+.+-.+...-     -..
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd  102 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD  102 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence            3788999988864 88999999999998877654444444455554432 2 34566555555443332110     000


Q ss_pred             c---------h------HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhh------HHHHHHHHhcCCCCc
Q 007842           82 E---------H------AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW------YIPLVKRLAAGEWFT  140 (587)
Q Consensus        82 ~---------~------~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~------l~~~l~~l~~~~~~~  140 (587)
                      .         +      .+..+.++...+...|.+||..++.-+..+...-+++. ...      -+.-+..+..|.-..
T Consensus       103 s~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~-q~~ll~~P~gIS~lmdlL~DsrE~  181 (970)
T KOG0946|consen  103 STQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL-QDALLVSPMGISKLMDLLRDSREP  181 (970)
T ss_pred             chhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH-HHHHHHCchhHHHHHHHHhhhhhh
Confidence            0         0      12344556666778899999999999999998877652 222      233344566666777


Q ss_pred             chhhHHhhhHhhcCCCChH----HHHHHHHHHHHhcCC----CChHHHHHHHHhHHHHHHhhccc-h--hhhHHHHHHHH
Q 007842          141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD----DMPMVRRSAASNLGKFAATVEPA-H--LKTDIMSIFED  209 (587)
Q Consensus       141 ~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d----~~~~vr~~~~~~l~~l~~~~~~~-~--~~~~l~~~l~~  209 (587)
                      .|-.++.++..+....+.-    ....++.-+...+..    +..-|-.-|+..+-.+.+..... .  .....+|-+.+
T Consensus       182 IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k  261 (970)
T KOG0946|consen  182 IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK  261 (970)
T ss_pred             hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence            8888998888887776542    223344444444332    23467777777777777664321 1  11122333332


Q ss_pred             hh-----hCC----chhHHHHHHHHHHHHhhh-cCh------------hhhhhchHHHHHHhccCC--cHHHHHHHHHHH
Q 007842          210 LT-----QDD----QDSVRLLAVEGCAALGKL-LEP------------QDCVAHILPVIVNFSQDK--SWRVRYMVANQL  265 (587)
Q Consensus       210 l~-----~d~----~~~vr~~a~~~l~~l~~~-~~~------------~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l  265 (587)
                      ++     .|+    +..-|...+..+-.+.+. .++            ......++..+...+-++  ...|+..++.+.
T Consensus       262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitv  341 (970)
T KOG0946|consen  262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITV  341 (970)
T ss_pred             hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHH
Confidence            22     332    223444433333333222 222            112445666666655544  346888888887


Q ss_pred             HHHHHHhC-------C----Ccc--ccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 007842          266 YELCEAVG-------P----EPT--RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR  309 (587)
Q Consensus       266 ~~~~~~~~-------~----~~~--~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  309 (587)
                      +.++....       .    ...  ...++-.++.+..+.. ...|.++.+++..+.-
T Consensus       342 AevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~  399 (970)
T KOG0946|consen  342 AEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY  399 (970)
T ss_pred             HHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence            77765321       0    111  1234445555555544 7789999998877653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.79  E-value=2.9  Score=39.79  Aligned_cols=140  Identities=12%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhccC----CchhHHHHHHHHHHHhhcccC--hHHH
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG--SEIT  511 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d----~~~~~R~~a~~~l~~l~~~~~--~~~~  511 (587)
                      .+++++..+++.++..|+..+..+...-+....  ...+++.+++.+.+    ++..++..++.+++.+...-.  ..+.
T Consensus       109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~  188 (312)
T PF03224_consen  109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW  188 (312)
T ss_dssp             HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence            355588889999999999999999875443221  13566666666554    455677889999999975321  1222


Q ss_pred             HhhHHHHHHhhc-----CCC--ChhHHHHHHHHHHHhhhh--hchHHHHhhHHHHHHHhcCC-CCccHHHHHHHHHHH
Q 007842          512 CSRLLPVVINAS-----KDR--VPNIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQS  579 (587)
Q Consensus       512 ~~~il~~l~~~l-----~d~--~~~vR~~~~~~l~~l~~~--~~~~~~~~~i~~~l~~l~~d-~d~~Vr~~a~~al~~  579 (587)
                      ....++.+.+.+     .+.  ..++...++-++-.+.-.  .-.......++|.+.++..+ ....|-+.+..++..
T Consensus       189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N  266 (312)
T PF03224_consen  189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN  266 (312)
T ss_dssp             THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            355566666666     222  444555555555444322  11122233466666664433 333444444444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.59  E-value=25  Score=43.69  Aligned_cols=281  Identities=16%  Similarity=0.201  Sum_probs=152.8

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc----Ch------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL----EP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~  270 (587)
                      ..+++.+...+..++..++..+..++..+....    +.      -...+.+++-+.+++.|+.|.-|...+..|+.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            446677777778888889999988888776542    21      12345677888889999999999999999888887


Q ss_pred             HhCCCcc---ccchHHHHHHhcCCChHHHHH----HHHHhHHHHHhh----hCH----HHHHHhHhHHHHHhccCCcHHH
Q 007842          271 AVGPEPT---RMDLVPAYVRLLRDNEAEVRI----AAAGKVTKFCRI----LNP----ELAIQHILPCVKELSSDSSQHV  335 (587)
Q Consensus       271 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~----~~~----~~~~~~i~~~l~~~~~d~~~~v  335 (587)
                      .++....   ..+++..+.-.+.|...++..    .+-..+..+...    ...    ......++..+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            6652111   123444444445553333222    122222222221    111    1223445555556667888999


Q ss_pred             HHHHHHHHHccccccchhH------HHHhH-HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH--Hh------hHHH
Q 007842          336 RSALASVIMGMAPLLGKDA------TIEQL-LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQ------SLLP  400 (587)
Q Consensus       336 r~~a~~~l~~l~~~~~~~~------~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~------~~l~  400 (587)
                      |..+...+..+++..|.+.      +.+.+ .|.+.+-+......+.-+-+.++.... .+++.-+  ..      ..+.
T Consensus      1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHHH
Confidence            9999999999887765432      11112 333333333333444433333332221 1121100  00      0000


Q ss_pred             H-----------HHHHhcCC----ChHHHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 007842          401 A-----------IVELAEDR----HWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNL  460 (587)
Q Consensus       401 ~-----------l~~~~~~~----~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  460 (587)
                      .           +......+    .-+.|..+++.+........     ...+.+.++..++..+..+..++-+.+..++
T Consensus      1222 ~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1222 ALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred             HhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            0           01100111    22457777777766554332     1223466777788888888888888888888


Q ss_pred             HHHHHH---hChHHHhhhhHHHHHh
Q 007842          461 KRLAEE---FGPEWAMQHITPQVLE  482 (587)
Q Consensus       461 ~~l~~~---~~~~~~~~~l~~~l~~  482 (587)
                      ......   ++.+.....+-|.+..
T Consensus      1302 ~~v~~~~~~~~ke~lq~~lrplL~~ 1326 (3550)
T KOG0889|consen 1302 RKVLAQDVKLPKELLQSHLRPLLMN 1326 (3550)
T ss_pred             HhhhhccccccHHHHHhhHHHHHHh
Confidence            776642   3444333333344443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.56  E-value=1.4  Score=38.15  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      ..++.+++...+++..+|..|+..+..+... |-- .....+|.++.+..|+++.+|..|...+..+.++.
T Consensus         8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            3445555555555555555555555555431 100 01345555555555555566655555555555544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.55  E-value=0.67  Score=37.84  Aligned_cols=73  Identities=11%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      .+..+..-++++|+.+...|+..+..+++++|..+.    ...++..+.+++++ .++.||..++..+..+...+..+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            344444445556666666677777777666665432    45566677777766 67788888888888887776543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=93.35  E-value=0.33  Score=36.05  Aligned_cols=70  Identities=20%  Similarity=0.335  Sum_probs=50.1

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHH
Q 007842          251 QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCV  324 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l  324 (587)
                      .+++|.+|..|++.++.++..++...  ....+...+.+.+.|++  ...+.+|+..|..++    ++.+...++|.+
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~l   89 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPNL   89 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccCc
Confidence            35689999999999999999888532  33457777777777654  567888888888874    444434455544

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.31  E-value=2.3  Score=40.46  Aligned_cols=110  Identities=19%  Similarity=0.131  Sum_probs=80.7

Q ss_pred             HHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---hHHHH
Q 007842          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKL  437 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l  437 (587)
                      ++..++..+..||..|+..+..........  .....+++.+..++.|.+..+|...++.+..+....+++.   +...+
T Consensus        63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~  142 (393)
T KOG2149|consen   63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL  142 (393)
T ss_pred             HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence            455667778889999988888877663221  1223456666777888999999999988888766655443   33456


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH
Q 007842          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      .+.+...+..-.+.+|.-+...+..+...+++.+.
T Consensus       143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~  177 (393)
T KOG2149|consen  143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS  177 (393)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence            67777778888899999999999999888887763

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.29  E-value=8.1  Score=37.13  Aligned_cols=117  Identities=11%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             HHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHH
Q 007842          182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV  261 (587)
Q Consensus       182 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a  261 (587)
                      ....++..+.+....++.+.+.+.++..+++.+...++.     +...+..     ......+.+..++.+.++.+-..+
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~l-----f~~~a~~-----~k~~~~~~fl~ll~r~d~~iv~~~  134 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDL-----FHDYAHK-----LKRTEWLSFLNLLNRQDTFIVEMS  134 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHH-----HHHHHHh-----hhccchHHHHHHHhcCChHHHHHH
Confidence            344445555555555666666666666666655443321     1111110     112224455566667777776666


Q ss_pred             HHHHHHHHHHhCCCcccc----chHHHHHHhcCC-ChHHHHHHHHHhHHHHHh
Q 007842          262 ANQLYELCEAVGPEPTRM----DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCR  309 (587)
Q Consensus       262 ~~~l~~~~~~~~~~~~~~----~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~  309 (587)
                      ...++.++.. |......    .....+...++. .+...+..++.+|..+..
T Consensus       135 ~~Ils~la~~-g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~  186 (442)
T KOG2759|consen  135 FRILSKLACF-GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR  186 (442)
T ss_pred             HHHHHHHHHh-ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence            6777666653 3222111    223334444444 445566666777766654

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.19  E-value=4.1  Score=34.32  Aligned_cols=110  Identities=17%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChH-
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE-  470 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-  470 (587)
                      ..+...+.++++++++.-|-.++..+..++...+.+.+.+   ..+..++..++. ....++..++.++..++...+.. 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4566667778888888888888888888888776666643   344555566654 45678999999999998755431 


Q ss_pred             -H-------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC
Q 007842          471 -W-------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (587)
Q Consensus       471 -~-------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~  507 (587)
                       .       ....+++.+.+++++  ......++.++..+....+
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence             1       123445555555554  4566777777777776443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.11  E-value=2.5  Score=34.23  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhhc
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      +..+..-++++++.+..-|+..+..+.+++|..+.    ...++..+.+++..      .+..||..++..+..+...++
T Consensus        40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44444556666777777777777777777776542    35566666666642      567889988888888887665


Q ss_pred             h
Q 007842          547 Q  547 (587)
Q Consensus       547 ~  547 (587)
                      .
T Consensus       120 ~  120 (139)
T cd03567         120 H  120 (139)
T ss_pred             c
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.93  E-value=0.44  Score=36.93  Aligned_cols=67  Identities=19%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             HHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhchH-HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          515 LLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       515 il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      ++..|.+++ ++.++.+-..||.=|+.++..++.- .+  .-.....+.+|++++|++||..|..|++.+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            334444444 2235555555666666666555332 11  1245677778888888999988888888765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.90  E-value=2.3  Score=34.65  Aligned_cols=88  Identities=7%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchH
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      ...+..+.+-++++++.+...|+..+..+.+++|..+.    ...++..+.++++ ..++.||..++..+..+...++.+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            34566666777888999999999999999999887553    4667777777776 568899999999999999887655


Q ss_pred             HHHhhHHHHHHHh
Q 007842          549 MVEKTIRPCLVEL  561 (587)
Q Consensus       549 ~~~~~i~~~l~~l  561 (587)
                      .-...+......|
T Consensus       120 ~~l~~i~~~y~~L  132 (142)
T cd03569         120 PQLKYVVDTYQIL  132 (142)
T ss_pred             cccHHHHHHHHHH
Confidence            3333343333333

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF05536 Neurochondrin: Neurochondrin

Probab=92.88  E-value=13  Score=38.37  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHhccCCcH-HHHHHHHHHHHHHHHHhCC---CccccchHHHHHH
Q 007842          216 DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGP---EPTRMDLVPAYVR  287 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~  287 (587)
                      ...+..|+..|..++.  ++    +...-.-+|.+...+...+. .+-..++++|..++.. ++   .......++.+.+
T Consensus        71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHH
Confidence            4567778888888775  22    11233457777777766655 8888899999888832 11   1112345566666


Q ss_pred             hcCCChHHHHHHHHHhHHHHHhhhCHH------HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------hh
Q 007842          288 LLRDNEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KD  353 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~  353 (587)
                      .+.+ .+.....++..+..+....+.+      .....+++.+...+.......+..++..++.+....+        ..
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            5555 5566777888888777766532      2234566777777766666677777877777655442        22


Q ss_pred             HHHHhHHHHHHHhhcCC-ChHHHHHHHHhhhhhhhhhchh
Q 007842          354 ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~  392 (587)
                      .....+...+..++++. .+.-|..++...+.+.+.+|.+
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            34567777777777765 5778889999999998888865

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.63  E-value=9.7  Score=36.30  Aligned_cols=207  Identities=13%  Similarity=0.154  Sum_probs=123.8

Q ss_pred             HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh-chh------hH---HhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPL  423 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~------~~---~~~~l~~l~~~~~~~~~~vR~~~~~~l~~  423 (587)
                      .+...+++.+...+..-+.+.|..+...+..+...- +..      .+   .+.++..+....++++...  .+-..+..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHH
Confidence            345677788888888888889988888887776542 211      11   1344555555555444221  11111111


Q ss_pred             HHHhhChhhhHH-----HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---hChHHHh---hhhHHHHHhhccCCchhHH
Q 007842          424 LASQLGVGFFDD-----KLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAM---QHITPQVLEMINNPHYLYR  492 (587)
Q Consensus       424 l~~~~~~~~~~~-----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~---~~l~~~l~~~l~d~~~~~R  492 (587)
                      .++   -+.+..     ...-.+....+.++.+|-.-|..++..+...   ...+++.   +.++.....++.++|+-+|
T Consensus       150 c~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  150 CIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            111   111111     1122256777889999999999998887753   2223322   4567777888999999999


Q ss_pred             HHHHHHHHHhhccc-ChHHH-----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch-H-------HHHhhHHHHH
Q 007842          493 MTILRAISLLAPVM-GSEIT-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------MVEKTIRPCL  558 (587)
Q Consensus       493 ~~a~~~l~~l~~~~-~~~~~-----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-~-------~~~~~i~~~l  558 (587)
                      ..+++.||.+...- ....+     .+.-+..+..+++|++.++|..|...+..++..-.. .       .-.+.++..+
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl  306 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL  306 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999997421 11111     245677888899999999999999999887654211 1       1235667777


Q ss_pred             HHhcCCC
Q 007842          559 VELTEDP  565 (587)
Q Consensus       559 ~~l~~d~  565 (587)
                      ..+..|+
T Consensus       307 ~~f~~~~  313 (335)
T PF08569_consen  307 KDFHTDR  313 (335)
T ss_dssp             HTTTTT-
T ss_pred             HhCCCCC
Confidence            7777777

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.59  E-value=0.27  Score=29.94  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=21.0

Q ss_pred             hhHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 007842          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  542 (587)
                      ...+|.+.++++++++.+|..++.+|++++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            446677777777777777777777777664

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.48  E-value=2.5  Score=37.92  Aligned_cols=72  Identities=11%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             HHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHH-----HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHh
Q 007842          122 LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT  193 (587)
Q Consensus       122 ~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~  193 (587)
                      +--++.|++.....+. .+..|.++.+.+|.+.+.-+++..     .+++|++...++.++..-|..|.-.+.++...
T Consensus        92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d  169 (262)
T PF04078_consen   92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD  169 (262)
T ss_dssp             GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred             chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            3456788886555543 456788899999988886666533     46778888888877777777777776666553

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.46  E-value=16  Score=38.34  Aligned_cols=150  Identities=14%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCCCccccchHHHH-------HH
Q 007842          216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVPAY-------VR  287 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l-------~~  287 (587)
                      ...|+..+-.++.=...--+.+..+.+-..+.++++|. +-.||-.+++++..+.....-  .++.++|.+       .+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF--~~dsFlp~lenlf~~lfk  578 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNF--SEDSFLPYLENLFVLLFK  578 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccC--ChhhhhhhHHHHHHHHHH
Confidence            45566666666653332222334555666778888888 677999999999887765431  122233332       33


Q ss_pred             hcCC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhcc--CCcHHHHHHHHHHHHccccccchh--HHHHhHH
Q 007842          288 LLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKD--ATIEQLL  360 (587)
Q Consensus       288 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~  360 (587)
                      +++. .+-+.|...+..++.+....++-  +....++.++-.+-.  .+++-.|.+....+.++...+|..  .+.+.+.
T Consensus       579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~  658 (978)
T KOG1993|consen  579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLY  658 (978)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHH
Confidence            3332 34566777888888777765542  223334444433332  356778999999999998888753  3456667


Q ss_pred             HHHHHhh
Q 007842          361 PIFLSLL  367 (587)
Q Consensus       361 ~~l~~~l  367 (587)
                      |++....
T Consensus       659 pVIel~~  665 (978)
T KOG1993|consen  659 PVIELST  665 (978)
T ss_pred             HHHHHhc
Confidence            7665443

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=22  Score=39.93  Aligned_cols=218  Identities=14%  Similarity=0.150  Sum_probs=124.0

Q ss_pred             hhhCCchhHHHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccCC---cHHHHHHHHHHHHHHHHHhCCCc---cccch
Q 007842          210 LTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP---TRMDL  281 (587)
Q Consensus       210 l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~---~~~vR~~a~~~l~~~~~~~~~~~---~~~~l  281 (587)
                      ....+.-+||....+++-.+.+..+..  ..|+.+++.+.....-.   +-.+-+.+..++.-++..+=+..   ....+
T Consensus       850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~l  929 (1610)
T KOG1848|consen  850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDL  929 (1610)
T ss_pred             HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHH
Confidence            344455678888889998888887762  12677777776554433   34455556666666654332211   12234


Q ss_pred             HHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH-----------------------------HHHHHhHhHHHHHhccCC
Q 007842          282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP-----------------------------ELAIQHILPCVKELSSDS  331 (587)
Q Consensus       282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~i~~~l~~~~~d~  331 (587)
                      ++.+..+.. -.+.++...|+..+..+...+..                             +...-.++..+.+++.|.
T Consensus       930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen  930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred             HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence            555544442 34456666666666655554321                             111123455667788888


Q ss_pred             cHHHHHHHHHHHHccccc----cchhH----HHHhHHHHHHHhhc---CC--ChHH----HHHHHHhhhhhhhhhchh--
Q 007842          332 SQHVRSALASVIMGMAPL----LGKDA----TIEQLLPIFLSLLK---DE--FPDV----RLNIISKLDQVNQVIGID--  392 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~----~~~~~----~~~~l~~~l~~~l~---d~--~~~v----r~~a~~~l~~l~~~~~~~--  392 (587)
                      -..||..|++.+-++...    +|...    +...+.|.+...-.   ++  .+++    -+..+-.++.+++.+...  
T Consensus      1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred             hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            899999999988777543    34332    33445554441100   10  1122    112223333333333211  


Q ss_pred             ---------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 007842          393 ---------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       393 ---------~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~  427 (587)
                               ...+.++..+..+..+.++.+..+++.++..+...
T Consensus      1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence                     23456777777888899999999999999887654

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=92.37  E-value=9.7  Score=35.71  Aligned_cols=161  Identities=13%  Similarity=0.025  Sum_probs=105.6

Q ss_pred             cchhhHHhhhHhhcCCCChHH----HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHh---hh
Q 007842          140 TARVSACGLFHIAYPSAPDIL----KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL---TQ  212 (587)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l---~~  212 (587)
                      .+-..|..+...+++..+++.    ..-..+-+..++...+..||......+....-.++. ...+.+-+++..+   +.
T Consensus        70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLe  148 (307)
T PF04118_consen   70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLE  148 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccc
Confidence            344456666666666666541    123445566666677788898888888887766655 4445554554444   46


Q ss_pred             CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC------C--------Cccc
Q 007842          213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG------P--------EPTR  278 (587)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~------~--------~~~~  278 (587)
                      |+..++...+...+..+...++++.++.-++-.+.     .++.+|..|...+..-.....      .        ...+
T Consensus       149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (307)
T PF04118_consen  149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP  223 (307)
T ss_pred             cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence            67778888899999999988887766666655555     457788888877655433222      0        0012


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHH
Q 007842          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTK  306 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~  306 (587)
                      .-++..+...++|++.-|++.++..+-.
T Consensus       224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~  251 (307)
T PF04118_consen  224 GLLVRALCACLEDENILVQRGFLDLLLS  251 (307)
T ss_pred             cHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            3467778888888888888887776654

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.34  E-value=2.7  Score=34.56  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHh-hhhHHHHHhhccCCchhHHHHHHHH
Q 007842          450 YSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                      ..+...++++++.++.....+.+. ..+++.+..++.+++.  |..|+++
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c  147 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC  147 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence            445555555555555433333222 2355555555533332  4555444

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.29  E-value=12  Score=36.57  Aligned_cols=59  Identities=17%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHccccccchhH--HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842          334 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (587)
                      .+-.....++..+....+..-  ....-+|.+...+-+....+|..|......+...++.+
T Consensus       149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~  209 (372)
T PF12231_consen  149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN  209 (372)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh
Confidence            344444444444444333211  13345667776666777889998877777776666654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.23  E-value=17  Score=41.27  Aligned_cols=212  Identities=18%  Similarity=0.122  Sum_probs=129.3

Q ss_pred             HHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHh---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hhHHH
Q 007842          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDK  436 (587)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~  436 (587)
                      .+.+-+...++..+..|+..+..++.....+....   .....+.+++.|.+.+||......+..+...++..  .+.+.
T Consensus        45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~  124 (1312)
T KOG0803|consen   45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS  124 (1312)
T ss_pred             HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            34455556678888888888888887665444322   23334455778889999998888888887766533  34556


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhc--------cC-----------CchhHHH
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMI--------NN-----------PHYLYRM  493 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~d-----------~~~~~R~  493 (587)
                      ++|...-...|....|-.+|-..+......-...    .+...+.+.+.+.+        .|           ...++-.
T Consensus       125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~  204 (1312)
T KOG0803|consen  125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS  204 (1312)
T ss_pred             hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence            7777777777888888777776665554311110    12234444443331        11           1234445


Q ss_pred             HHHHHHHHhhcccChHHHHh---------hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHh
Q 007842          494 TILRAISLLAPVMGSEITCS---------RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL  561 (587)
Q Consensus       494 ~a~~~l~~l~~~~~~~~~~~---------~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l  561 (587)
                      .++.++..+....|...-..         .--..+.+.++++++.+|.+..+.+..++.....-   .....+.|.+...
T Consensus       205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~  284 (1312)
T KOG0803|consen  205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGS  284 (1312)
T ss_pred             HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcc
Confidence            56666666665444321111         12246777899999999999999999888765443   2335566777666


Q ss_pred             cCCCCccHHHHHH
Q 007842          562 TEDPDVDVRFFAT  574 (587)
Q Consensus       562 ~~d~d~~Vr~~a~  574 (587)
                      ..+.| -|...+.
T Consensus       285 ~~~~d-~~c~~~w  296 (1312)
T KOG0803|consen  285 IDSLD-HVCSSMW  296 (1312)
T ss_pred             ccccc-cccHHHH
Confidence            66666 3333333

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.09  E-value=2  Score=35.33  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC-Cchh
Q 007842          412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYL  490 (587)
Q Consensus       412 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~  490 (587)
                      -+|...+..+..++...-++.. +.+++.+...++. +..-....+..|..+.+.+..             .... ....
T Consensus         3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~   67 (148)
T PF08389_consen    3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQE   67 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred             hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence            3566677777777766544443 3466666666665 344445555555555443211             0011 1122


Q ss_pred             HHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC----ChhHHHHHHHHHHHhhhhhchHHHHh-hHHHHHHHhcCCC
Q 007842          491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSMVEK-TIRPCLVELTEDP  565 (587)
Q Consensus       491 ~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~----~~~vR~~~~~~l~~l~~~~~~~~~~~-~i~~~l~~l~~d~  565 (587)
                      .|......+..-         .+.++..+.+.+...    ...+...+++++..+....+...... .+++.+-+++++ 
T Consensus        68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~-  137 (148)
T PF08389_consen   68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS-  137 (148)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC-
Confidence            233333333332         134444444444332    27889999999999998877775544 488888887744 


Q ss_pred             CccHHHHHHHHH
Q 007842          566 DVDVRFFATQAI  577 (587)
Q Consensus       566 d~~Vr~~a~~al  577 (587)
                       ++.+..|+.+|
T Consensus       138 -~~~~~~A~~cl  148 (148)
T PF08389_consen  138 -PELREAAAECL  148 (148)
T ss_dssp             -CCCHHHHHHHH
T ss_pred             -HHHHHHHHHhC
Confidence             44477877765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.05  E-value=3.9  Score=39.01  Aligned_cols=106  Identities=22%  Similarity=0.237  Sum_probs=61.4

Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH---HHhhHHH
Q 007842          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLP  517 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~  517 (587)
                      ..++..+..||..|...+..+........  ....+++.+..+..|.+..+|......+..++....++.   +...+++
T Consensus        65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~  144 (393)
T KOG2149|consen   65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP  144 (393)
T ss_pred             hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence            34466666666666666666655422111  123455555666666666677766666666554333322   3345566


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       518 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      .+...+.+-.+.+|.-+.+.+..+...+++.
T Consensus       145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  145 YISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            6666666666777777777776666666554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.04  E-value=0.76  Score=39.72  Aligned_cols=69  Identities=17%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      ....++.+++++.+++..+|..+++.+..+...-=-.+  ...+|.+..|..|+++.+|..|...+..+.+
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e   74 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHE   74 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence            45677888888899999999999999999876411111  3689999999999999999999999988865

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=26  Score=39.92  Aligned_cols=149  Identities=9%  Similarity=0.012  Sum_probs=90.5

Q ss_pred             HHHHHHHH-HhcCCCchHHHHHHHHHHHHHHH--HhC-hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842          435 DKLGALCM-QWLQDKVYSIRDAAANNLKRLAE--EFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       435 ~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~  510 (587)
                      +.++..+. ....+..|.||.+++..+..++-  .++ .+.-.+.+.-.+...++|.+-.+|+.|..++.-+.+......
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence            33444444 33456789999999998887753  222 122345677777888999988999999999999876432221


Q ss_pred             HHhhHHHHHHhh-cCCCChhHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          511 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       511 ~~~~il~~l~~~-l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      ......+..... ....+...+-.++.+++.++-.++...  +....+..+-....|+ ..++..+.+++..+....
T Consensus      1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            111122222221 223355566778888888887766542  2223333333333444 458888888888877654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=92.01  E-value=26  Score=39.79  Aligned_cols=210  Identities=14%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhHHHHHhhhCHH----HH--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHH---hHHHH
Q 007842          294 AEVRIAAAGKVTKFCRILNPE----LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIE---QLLPI  362 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~----~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~---~l~~~  362 (587)
                      ..+|..+..+|-.+.  +|..    ..  ...++..+...+......+....+..|.++....+..  ..+.   .+.-+
T Consensus       365 ~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL  442 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL  442 (2195)
T ss_pred             HHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence            557777777776543  2211    00  1234455554445455566666677777776544321  1111   12223


Q ss_pred             HHHhhcCCChHHHHHHHHhhhhhhhhhchhh----HHhhHHHHHHHHhcCCChHHHHHHHH----HHHHHHHhhC-hhhh
Q 007842          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIE----YIPLLASQLG-VGFF  433 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~~~~~~~~vR~~~~~----~l~~l~~~~~-~~~~  433 (587)
                      ..-.+....+..-.+++.+|-++..+...+.    -.+..+-.|..++.-+.+.--.++++    .|..+...+. .+.+
T Consensus       443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y  522 (2195)
T KOG2122|consen  443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY  522 (2195)
T ss_pred             HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence            3334444444555566666666655443221    01333444444443222211122222    2222222221 1112


Q ss_pred             -----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH--HH-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842          434 -----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (587)
Q Consensus       434 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~  505 (587)
                           ...++..+++.|+..+..|-..++.+|+++......+  ++ ..-.++.+..++.+++..+-+.+..+|.++...
T Consensus       523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence                 2346788899999999999999999999998654433  12 244577888888888888888888898888753

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=91.97  E-value=1.1  Score=37.46  Aligned_cols=132  Identities=15%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC---hHHH-HhhHHHHHHhh
Q 007842          447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEIT-CSRLLPVVINA  522 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~---~~~~-~~~il~~l~~~  522 (587)
                      ....++|..+.-++..+.+..+.+ +.+.+-+.+...+.+.+..-...++.++..+.+...   ..-+ .+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            356678888888887776443333 445555555555555555566777777777765322   1111 35566777766


Q ss_pred             cC--CCChhHHHHHHHHHHHhhhhhc-hHHHHhhHHHHHHHhc-CCCCcc-HHHHHHHHHHH
Q 007842          523 SK--DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELT-EDPDVD-VRFFATQAIQS  579 (587)
Q Consensus       523 l~--d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~i~~~l~~l~-~d~d~~-Vr~~a~~al~~  579 (587)
                      ..  .++..+...+++++..-+..-. ...+.+...+.|.++. ++++.. +|..|.-+|-+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            66  6677888888888876543321 2234566778888876 455555 77777766644

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.87  E-value=0.34  Score=29.48  Aligned_cols=31  Identities=32%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          551 EKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       551 ~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      ....+|.|.+++.+++.+|+..|+.||+.|+
T Consensus        10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=91.82  E-value=8.6  Score=33.90  Aligned_cols=134  Identities=16%  Similarity=0.089  Sum_probs=86.4

Q ss_pred             hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC--CCCcchhhHHhhhHhhcCCCChHHHHH
Q 007842           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAYPSAPDILKTE  163 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~~~~~~~~~~~  163 (587)
                      .+..++..+..++.-+.|-.|+..+........++.     ++.+..+..+  .|..+-..+..+++.+..+     ...
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~  115 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE  115 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence            344555566777767788888887777655555443     3333333332  2444444455555444332     123


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      +.+.+.....+++..+|+.++-+.-.+...    ...+.+..++..+++|+..-|+++..-.|..++..-
T Consensus       116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d  181 (208)
T cd07064         116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN  181 (208)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC
Confidence            467888889999999999988654443332    223567778888899999999999888888887763

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=91.48  E-value=3.1  Score=33.60  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC---CChhHHHHHHHHHHHhhhhhch
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d---~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                      ..+..+..-++++++.+...|+..+..+.+++|..+.    ...++..+.+++..   .++.||..++..+..+...++.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4455566667777888888888888888888777442    23455556666654   4778999999999988877765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.35  E-value=1.6  Score=33.94  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=38.8

Q ss_pred             HHHHHHHhh-hCCchhHHHHHHHHHHHHhhhcChhh-h--hhchHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 007842          203 IMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       203 l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~  270 (587)
                      ++..+..++ .+.++.+-..|+.-++.+++..|... .  .-.....+.++++++++.||..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            344444444 23345555566666777666655421 1  12245566777788888888888888877654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.18  E-value=3.3  Score=33.74  Aligned_cols=75  Identities=11%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCC-Chh---HHHHHHHHHHHhhhhh
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDR-VPN---IKFNVAKVLQSLIPIV  545 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~-~~~---vR~~~~~~l~~l~~~~  545 (587)
                      ...+..+.+-++++++.+...|+..+..+.+++|..+.    ...++..+.+++.++ ...   ||..++..+..+...+
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            45666777778889999999999999999998887653    344777777766543 222   8999999999998887


Q ss_pred             chH
Q 007842          546 DQS  548 (587)
Q Consensus       546 ~~~  548 (587)
                      +..
T Consensus       121 ~~~  123 (140)
T PF00790_consen  121 KSD  123 (140)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.12  E-value=32  Score=39.18  Aligned_cols=232  Identities=13%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             CcHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHh
Q 007842          253 KSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL  327 (587)
Q Consensus       253 ~~~~vR~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~  327 (587)
                      .++..|..|.+.++.++.....+....   .....+.++..|.+..||......+..+...++..  ++.+.++|...-.
T Consensus        53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~  132 (1312)
T KOG0803|consen   53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG  132 (1312)
T ss_pred             cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence            445566666666666665433222111   12233455566777777777777776666655543  4555555555555


Q ss_pred             ccCCcHHHHHHHHHHHHccccccc-h---hHHHHhHHHHHHHhhc--------C-----------CChHHHHHHHHhhhh
Q 007842          328 SSDSSQHVRSALASVIMGMAPLLG-K---DATIEQLLPIFLSLLK--------D-----------EFPDVRLNIISKLDQ  384 (587)
Q Consensus       328 ~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~l~--------d-----------~~~~vr~~a~~~l~~  384 (587)
                      ..|....|-.+|...+......-. .   ..+.+.+.+.+.+.+-        |           ....|-..++.++..
T Consensus       133 ~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~  212 (1312)
T KOG0803|consen  133 QFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLK  212 (1312)
T ss_pred             ecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHH
Confidence            556666666655555544332100 0   0112223333332210        1           112233344555555


Q ss_pred             hhhhhchhhHHh---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcCCCchHH
Q 007842          385 VNQVIGIDLLSQ---------SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSI  452 (587)
Q Consensus       385 l~~~~~~~~~~~---------~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v  452 (587)
                      +....|...-..         .--..+-.+.+++.+.+|.+..+.+..+.+.+..-   .-..++.|.+.....+.+ -|
T Consensus       213 l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~  291 (1312)
T KOG0803|consen  213 LFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HV  291 (1312)
T ss_pred             HHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cc
Confidence            554444321111         01133455678889999999988888877665322   123456666666665555 33


Q ss_pred             HHHHHHHHHHHHHHhChHHH------hhhhHHHHHhhcc
Q 007842          453 RDAAANNLKRLAEEFGPEWA------MQHITPQVLEMIN  485 (587)
Q Consensus       453 r~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~  485 (587)
                      -......+..+...+..+|+      ...++|.+.+.+.
T Consensus       292 c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  292 CSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             cHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            33333333323344444432      3456777766655

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=90.98  E-value=20  Score=36.54  Aligned_cols=155  Identities=8%  Similarity=0.004  Sum_probs=87.8

Q ss_pred             hhhhHHHHHHHHhhhCCch--hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc--------cCCcHHHHHHHHHHHHH
Q 007842          198 HLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--------QDKSWRVRYMVANQLYE  267 (587)
Q Consensus       198 ~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--------~d~~~~vR~~a~~~l~~  267 (587)
                      +...+++.-+-.-+.+.+|  .--..-+.+++++...++.......++..++.++        .|...-|-....-.+|+
T Consensus       477 Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ  556 (1053)
T COG5101         477 DTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ  556 (1053)
T ss_pred             hHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc
Confidence            4445555555555555544  3334456677777777766544445555554433        23222221111112222


Q ss_pred             HHHHhC-CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------HHHHHhHhHHHHHhccCCcHHHH
Q 007842          268 LCEAVG-PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVR  336 (587)
Q Consensus       268 ~~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~i~~~l~~~~~d~~~~vr  336 (587)
                      .-..+. .......++.-+.+++.+...-|+..|+..+-.+...++.          +.+...++..+.+...|-.+.-.
T Consensus       557 YpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~  636 (1053)
T COG5101         557 YPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQK  636 (1053)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHH
Confidence            111110 0111233555556666666788999999999999887753          34555666666677778888888


Q ss_pred             HHHHHHHHccccccch
Q 007842          337 SALASVIMGMAPLLGK  352 (587)
Q Consensus       337 ~~a~~~l~~l~~~~~~  352 (587)
                      ....++++.+.+..++
T Consensus       637 htfYeAcg~vIse~p~  652 (1053)
T COG5101         637 HTFYEACGMVISEVPK  652 (1053)
T ss_pred             hHHHHHHhHHHhccch
Confidence            8888888877665554

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=90.68  E-value=0.92  Score=37.87  Aligned_cols=60  Identities=15%  Similarity=0.220  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842          252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      |+.-.+|.+|.+++..+...+........+.+.+...++| +.++|..+...+..++...+
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p   97 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP   97 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence            4566788888888888877666655556677778888888 78888888888887766443

; PDB: 4A0C_A 1U6G_C.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.41  E-value=24  Score=36.49  Aligned_cols=104  Identities=17%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  314 (587)
                      ..+..+++.++...|.+.++.++++...+..+.        ..+.++..+.+.+.|..+-+|..|+..+..+...-..- 
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~  381 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV  381 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence            345667888899999999999999998776433        22357888888899999999999999998887642211 


Q ss_pred             HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc
Q 007842          315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (587)
Q Consensus       315 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                      .-..++...+...++|.+.-||+.+++.++.+.
T Consensus       382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            112567778888899999999999999988764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.38  E-value=17  Score=34.71  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=70.4

Q ss_pred             HHHhhcCCChHHHHHHHHhhhhhhhhhc---hh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----
Q 007842          363 FLSLLKDEFPDVRLNIISKLDQVNQVIG---ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----  432 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----  432 (587)
                      +....+..+-+|-..|..++..+.....   .+   ...+.+...+..++.++|+-+|...++.++.+.-.-..-.    
T Consensus       169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~  248 (335)
T PF08569_consen  169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR  248 (335)
T ss_dssp             HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred             HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence            4566777788888888888777654321   11   1124555667778899999999999999998864321111    


Q ss_pred             --hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842          433 --FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (587)
Q Consensus       433 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                        -.+.-+.+++.++.|++..+|..|.+.+..++..
T Consensus       249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence              1244577788899999999999999999988864

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.38  E-value=8.7  Score=31.42  Aligned_cols=74  Identities=9%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh----hhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCC
Q 007842          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE  275 (587)
Q Consensus       202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~  275 (587)
                      ..+..+..-++..++.|...|+..+..+...++..    .....++..+.+++++ .+..||..+...+...+..++.+
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            34444444555667777777777777777777752    2233455556666666 56777777777777777776643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.33  E-value=15  Score=33.91  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             HHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHhHh
Q 007842          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHIL  321 (587)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~  321 (587)
                      +..++.+.+|.||..|++.+..+... +-.   ......++.+.+++++.++  -.-|+.++.+++...+-. .....++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44566777788888887666554433 211   1123467777777777766  344566666666543221 2222344


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842          322 PCVKELSSDSSQHVRSALASVIMGMAPL  349 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      ..+...+.|+.|..-...+..+.+++..
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~~  112 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSRD  112 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence            4455556677666666667777766643

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.33  E-value=36  Score=38.39  Aligned_cols=217  Identities=12%  Similarity=0.110  Sum_probs=118.4

Q ss_pred             HhhcCCChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhc---CCChHHHHHHHHHHHHHH----HhhChhhhHH
Q 007842          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE---DRHWRVRLAIIEYIPLLA----SQLGVGFFDD  435 (587)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~---~~~~~vR~~~~~~l~~l~----~~~~~~~~~~  435 (587)
                      .....+..+||...++++-.+.+..|...+  .+.++..+.....   .+.-.+-......+..+.    +.++.+.+. 
T Consensus       849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~-  927 (1610)
T KOG1848|consen  849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL-  927 (1610)
T ss_pred             HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH-
Confidence            344556678999999999999888776532  2333444433322   122222222333333332    222222222 


Q ss_pred             HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCh-------H-----------------H-----HhhhhHHHHHhhcc
Q 007842          436 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------E-----------------W-----AMQHITPQVLEMIN  485 (587)
Q Consensus       436 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~-----------------~-----~~~~l~~~l~~~l~  485 (587)
                      .++..+..+- +..+.++-..|+..+..+...+..       +                 +     ..--++.++.+...
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence            2333333322 445666666777776666543221       0                 0     01123455666678


Q ss_pred             CCchhHHHHHHHHHHHhhcccCh----HH----HHhhHHHHHHhhcC---CC--C----hhHHHHHHHHHHHhhhhhchH
Q 007842          486 NPHYLYRMTILRAISLLAPVMGS----EI----TCSRLLPVVINASK---DR--V----PNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       486 d~~~~~R~~a~~~l~~l~~~~~~----~~----~~~~il~~l~~~l~---d~--~----~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      |+...||..|++.+-.+....|.    ..    .+..++|.+-..-.   ++  .    .+--...+-+++.|+.-+...
T Consensus      1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred             cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence            88899999999998888765443    21    24445554442100   11  0    111133444444444433321


Q ss_pred             -----------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          549 -----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       549 -----------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                                 ..-+.++..+..+..|..+++...|.+++.++-.
T Consensus      1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence                       2336788888999999999999999999988653

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.32  E-value=21  Score=35.79  Aligned_cols=387  Identities=14%  Similarity=0.137  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV  239 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  239 (587)
                      .++.++..+..+...++ .+|...+-++..++-..+  .+.+.+...+....+.... ++     .+-.+.+.+|.+...
T Consensus        60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~-----~lLeiL~VlPEE~~~  130 (559)
T KOG2081|consen   60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VP-----ILLEILKVLPEETRD  130 (559)
T ss_pred             HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HH-----HHHHHHHhCcHhhcc
Confidence            45556666666655554 888888888888887763  3444444444444433332 22     222333334333111


Q ss_pred             hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC---hHHHHHHHHHhHHHHHh--hhCHH
Q 007842          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN---EAEVRIAAAGKVTKFCR--ILNPE  314 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~--~~~~~  314 (587)
                      ....     ..    ..-|......++.         ....++..+..++++.   +..+-..++++++....  .+..+
T Consensus       131 ~~~~-----~~----a~Rr~e~~~~l~~---------~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d  192 (559)
T KOG2081|consen  131 IRLT-----VG----ANRRHEFIDELAA---------QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD  192 (559)
T ss_pred             hhhh-----hh----hhhHHHHHHHHHH---------hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence            1100     00    0111111111111         0123444455555432   24555666666666554  33333


Q ss_pred             HHHH--hHhHHHHHhccCCcHHHHHHHHHHHHcccccc-----c-h---hH-HHHhHHHHHHHh-hcCCChHHHHHHHHh
Q 007842          315 LAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLL-----G-K---DA-TIEQLLPIFLSL-LKDEFPDVRLNIISK  381 (587)
Q Consensus       315 ~~~~--~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-----~-~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~  381 (587)
                      .+..  .++..+...+++  ...-..+.+++..+....     + +   .. ....++|...++ ....+.+-+.+..+.
T Consensus       193 ~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI  270 (559)
T KOG2081|consen  193 QVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI  270 (559)
T ss_pred             HHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence            2211  223333334442  222333333332221111     0 0   00 011223333322 233445555566666


Q ss_pred             hhhhhhhhc------hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-------hhHHH---HHHHHHHhc
Q 007842          382 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL  445 (587)
Q Consensus       382 l~~l~~~~~------~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l  445 (587)
                      +..+++.+.      ++.. -.++..+.-....++|++-...+..+..+.+.+-..       .|.++   ++..+....
T Consensus       271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~  349 (559)
T KOG2081|consen  271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV  349 (559)
T ss_pred             HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence            666555432      1111 122333344456777777776666666665544211       12222   222222222


Q ss_pred             C------------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842          446 Q------------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (587)
Q Consensus       446 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      +            ++-..-|......+..+....|.+...+.+.-.+.+  +++.|+.-++++..+..+++++.++.  +
T Consensus       350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~  425 (559)
T KOG2081|consen  350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--N  425 (559)
T ss_pred             cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--c
Confidence            1            223467888888888888888875433333333332  46689999999999999999887753  5


Q ss_pred             hHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          514 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       514 ~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .++|.+++.+-+  ....+|.+++..+|.+.+.+... ...+-++..+.+...+..  ....|+.|+..++.
T Consensus       426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            677777776432  24449999999999998876543 233444455555444444  55566666666554

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.13  E-value=0.57  Score=28.66  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +.+...+...+.|+++.||.+|+..
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4566667777788888888887764

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=89.85  E-value=0.37  Score=29.51  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=10.0

Q ss_pred             hHHHHHHhcCCChHHHHHHHHH
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAG  302 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~  302 (587)
                      +...+...+.|+++.||.+++.
T Consensus        19 v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   19 VQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHhcCCChHHHHHHHH
Confidence            4444444444444444444443

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.59  E-value=3.3  Score=33.41  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=43.8

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhhhhch
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~  547 (587)
                      +..+..-++++++.+...|+..+..+.+++|..+.    ...++..+.++++++.  +.||..++..+..+...+..
T Consensus        39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            44444445556666666666666666666665432    3445666666655542  33888888888888777654

Unpublished observations. Domain of unknown function.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=89.54  E-value=11  Score=32.88  Aligned_cols=65  Identities=18%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       166 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      +.+.....+++..+|+.+...+......   +...+.+++++..+..|++..|+.+....|..++...
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~  172 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD  172 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence            6777788888888888887777665554   3456777888888888888888888888888877663

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=89.19  E-value=46  Score=38.00  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      ...++..|+..|+..+-.|-.++|.+|.++...-..+   .+....++.|.+|...+...+-+.++.||..+...
T Consensus       528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            3567888999999999999999999999998765444   35566789999999999999999999998877543

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=88.70  E-value=22  Score=33.79  Aligned_cols=60  Identities=10%  Similarity=0.035  Sum_probs=47.9

Q ss_pred             CChHHHHHHHHHHHHHHHhh-------ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842          409 RHWRVRLAIIEYIPLLASQL-------GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (587)
Q Consensus       409 ~~~~vR~~~~~~l~~l~~~~-------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      ..|..|....+.+..+.+..       +++.+ ..++..+...++++..+|-..++.++..+......
T Consensus       132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999888763       23333 45678888899999999999999999999886544

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=88.47  E-value=36  Score=35.80  Aligned_cols=107  Identities=18%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             chHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH-------HH-HHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842          280 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP-------EL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       280 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .++..+..++. ..++.+-++++.+|..+....+.       .. ..+..+|.+..++...+..|..+++.+|.+++...
T Consensus       518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~  597 (717)
T KOG1048|consen  518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI  597 (717)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence            46666555554 34577888888888877654321       11 23567888888888888888888888988887655


Q ss_pred             c-hhHHHHhHHHHHHHhhcCCC------hHHHHHHHHhhhhhh
Q 007842          351 G-KDATIEQLLPIFLSLLKDEF------PDVRLNIISKLDQVN  386 (587)
Q Consensus       351 ~-~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~l~  386 (587)
                      . ++.+..+.+|-+...+.+..      +++-..++..+..+.
T Consensus       598 rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv  640 (717)
T KOG1048|consen  598 RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV  640 (717)
T ss_pred             hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence            3 33445567788888876653      345555555555544

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=88.31  E-value=18  Score=36.55  Aligned_cols=142  Identities=18%  Similarity=0.122  Sum_probs=86.0

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hh
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV  239 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~  239 (587)
                      ....+..-..|-++.+|..+...++...+.++.-...-..+...--++.|....||....+++..+....+...    ..
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            33455566788899999999999998888774322222234444556789999999999999999998877532    22


Q ss_pred             hchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842          240 AHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (587)
Q Consensus       240 ~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      +.....+.. +..|.+- ||..+++.+..+... |--  ...-+.++..++=|..+.-|....+.+..+++
T Consensus       356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK  422 (740)
T COG5537         356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK  422 (740)
T ss_pred             HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            222233333 3345555 999999998876542 211  11122333444555555544444444444443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.97  E-value=9.1  Score=30.87  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  482 (587)
                      .+++|..-..++..+..-      +.-....+..+...++.+++.++..|+..|..+++..|..+.    ...++..+..
T Consensus        14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            457777655554444321      111334567778888999999999999999999999888652    2356666777


Q ss_pred             hccC---CchhHHHHHHHHHHHhhcccCh
Q 007842          483 MINN---PHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       483 ~l~d---~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      ++..   .+..+|..++..+......++.
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            7654   4678999999999988877664

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.94  E-value=41  Score=35.94  Aligned_cols=324  Identities=13%  Similarity=0.074  Sum_probs=163.2

Q ss_pred             hHHhhhHhhcCCCChHHHH---HHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCCchhH
Q 007842          144 SACGLFHIAYPSAPDILKT---ELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSV  218 (587)
Q Consensus       144 ~a~~~l~~~~~~~~~~~~~---~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~v  218 (587)
                      +++..+.....+.+.....   .++...... ..-.++..-..+...+|.++..+++ +.+.+..+|.+.+.+...... 
T Consensus       486 aci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s-  564 (982)
T KOG2022|consen  486 ACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES-  564 (982)
T ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH-
Confidence            3445555666666554322   333333222 2234778888899999999998876 456777788888777533332 


Q ss_pred             HHHHHHHHHHHhhhcChh--hhhhchHHHHHHhccC--CcHHHHHHHHHHHHHHHHHhCCCccccch---HHHHHHhc--
Q 007842          219 RLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRMDL---VPAYVRLL--  289 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~~l---~~~l~~~l--  289 (587)
                       ..+...+..+++.++.+  .+...++......+..  -....|....+.+|.+.....++..+..+   +..+..-+  
T Consensus       565 -~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~  643 (982)
T KOG2022|consen  565 -EQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEI  643 (982)
T ss_pred             -HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHH
Confidence             23455577777776542  1223333334443332  34568888999999998877654444332   22222211  


Q ss_pred             --C-C-ChHHHHHHHHHh---HHHHHhhhC----------------------HHHHHHhHhHHHHHhcc--CCcHHHHHH
Q 007842          290 --R-D-NEAEVRIAAAGK---VTKFCRILN----------------------PELAIQHILPCVKELSS--DSSQHVRSA  338 (587)
Q Consensus       290 --~-d-~~~~vr~~a~~~---l~~l~~~~~----------------------~~~~~~~i~~~l~~~~~--d~~~~vr~~  338 (587)
                        . + ++++-+...+..   +..+...+.                      .-.+..+++|.+.+.+.  -.+..|-.+
T Consensus       644 ~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~  723 (982)
T KOG2022|consen  644 NLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEA  723 (982)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence              1 1 122222222222   233333221                      01234566777766553  123455566


Q ss_pred             HHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHH--------hhHHHHHHHHhc
Q 007842          339 LASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAE  407 (587)
Q Consensus       339 a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~l~~~~~  407 (587)
                      +|.....=....+.   ..+.+.+.+++..+........-.-...++......-+.....        +..+-.+.+---
T Consensus       724 ~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f  803 (982)
T KOG2022|consen  724 SCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPF  803 (982)
T ss_pred             HHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCC
Confidence            55554432222222   2234555666666443331111111111111111111100000        111111111111


Q ss_pred             CCChHHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842          408 DRHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (587)
Q Consensus       408 ~~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      .+++++-...+..+..+.+..+      ...|...+.+..+.+++.+.+..-.++.+.+..+....+.
T Consensus       804 ~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  804 SNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             CCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence            2456666666666666665432      2234566777788899999888888888888887765443

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=87.75  E-value=36  Score=35.03  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             HHHHHHHHhhChhhhHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh----hccCCchhHHH
Q 007842          419 EYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRM  493 (587)
Q Consensus       419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~----~l~d~~~~~R~  493 (587)
                      ..++.+.+.+.++.+.+ ++-.+..++ .++...+|-+.+..++.+.+.+-++...+.+.|.+..    ++.|.+|.+++
T Consensus       463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q  541 (559)
T PF14868_consen  463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ  541 (559)
T ss_pred             HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence            33444444444444333 333334444 4555668888888888888766555455556665544    36888999999


Q ss_pred             HHHHHHHHhhccc
Q 007842          494 TILRAISLLAPVM  506 (587)
Q Consensus       494 ~a~~~l~~l~~~~  506 (587)
                      .|+++++.+++..
T Consensus       542 ~ALeAF~~FAe~T  554 (559)
T PF14868_consen  542 HALEAFGQFAERT  554 (559)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999988744

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=87.73  E-value=8.1  Score=31.50  Aligned_cols=72  Identities=11%  Similarity=0.076  Sum_probs=44.3

Q ss_pred             HHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHH----HhhHHHH-HHhhcCC---CChhHHHHHHHHHHHhhhhhch
Q 007842          477 TPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKD---RVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       477 ~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~d---~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                      +..+.+-++ ++++.+..-|+..+..+.+++|..+.    ...++.. +.+++.+   .+..||..++..+..+...++.
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~  119 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG  119 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence            333333333 34666666667777777777776442    3455554 6666542   3457888888888888877654


Q ss_pred             H
Q 007842          548 S  548 (587)
Q Consensus       548 ~  548 (587)
                      +
T Consensus       120 ~  120 (141)
T cd03565         120 S  120 (141)
T ss_pred             C
Confidence            4

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.41  E-value=47  Score=35.97  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---H--HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--
Q 007842          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---W--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--  508 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~--~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--  508 (587)
                      +++.-...++++++..+|..|+.++......+...   .  .....+|.+++.+.++|+-+-+.|+.++..++...|.  
T Consensus       803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv  882 (1014)
T KOG4524|consen  803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV  882 (1014)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence            35555677889999999999999988766554332   1  2456788888889999999999999999999988875  


Q ss_pred             -HHHHhhHHHHHHhhcCCC
Q 007842          509 -EITCSRLLPVVINASKDR  526 (587)
Q Consensus       509 -~~~~~~il~~l~~~l~d~  526 (587)
                       +.+...++|.+..+++|.
T Consensus       883 ~sR~l~dvlP~l~~~~~~~  901 (1014)
T KOG4524|consen  883 ASRFLEDVLPWLKHLCQDS  901 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence             335677788777666654

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=87.11  E-value=11  Score=28.91  Aligned_cols=61  Identities=10%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhh
Q 007842          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~~  432 (587)
                      ....-|..++.+++.+.+ .+.+.. ....|.+...+..  +.+..|..+++++..+.+.++.+.
T Consensus        27 ~~~~ek~~~l~si~~lI~-~~~~~i-~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIK-LGGSHI-SSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             CCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence            345566667777777666 333221 2333333332221  122566666666666666655443

; GO: 0004674 protein serine/threonine kinase activity

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=87.10  E-value=13  Score=29.31  Aligned_cols=70  Identities=16%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hccCCchh-HHHHHHHHHHHhhccc
Q 007842          434 DDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYL-YRMTILRAISLLAPVM  506 (587)
Q Consensus       434 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~-~R~~a~~~l~~l~~~~  506 (587)
                      ...++|.+...+. ....+.|.++...++.++....-   .+.++..+.+ +.++.... ....++.++..+.+.-
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence            4567788888887 77788888888888888875442   2333333333 22322221 1345666677766544

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=87.01  E-value=22  Score=31.68  Aligned_cols=70  Identities=13%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             HhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842          123 VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (587)
Q Consensus       123 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~  192 (587)
                      --++.|++.....+. .+.-|.++.+.++.+.+.-+.+     ...+++|++...++..+..-+..+...++++..
T Consensus       122 PlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll  197 (293)
T KOG3036|consen  122 PLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL  197 (293)
T ss_pred             hhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence            345677776555544 4567888999999888877766     335788999999998888888888877777665

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.92  E-value=19  Score=32.96  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             HHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHhChHHHhhhhHHHH-HhhccCCchhHHHHHHHHHHHhhcccChHHH
Q 007842          438 GALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMGSEIT  511 (587)
Q Consensus       438 ~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l-~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~  511 (587)
                      +|.++..+.+++     ..++ .++..++.+++..+..... .++... ...+++.+..+++.+    ..+...+.++ +
T Consensus       113 LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La-~il~~ya~~~fr~~~dfl~~v~----~~l~~~f~P~-~  185 (262)
T PF14225_consen  113 LPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLA-RILSSYAKGRFRDKDDFLSQVV----SYLREAFFPD-H  185 (262)
T ss_pred             HHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHH-HHHHHHHhcCCCCHHHHHHHHH----HHHHHHhCch-h
Confidence            455555555544     3444 4456777777654443221 112111 111223222233322    2233333222 2


Q ss_pred             HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH-HHHhhHHHHHHHhcCC
Q 007842          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTED  564 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d  564 (587)
                      ...++..+..++.++.+++|..+++.|..+.+...-. .+..+++..+.+++..
T Consensus       186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t  239 (262)
T PF14225_consen  186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT  239 (262)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC
Confidence            3456777888888888999999999999888765433 2445566666665543

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=86.79  E-value=25  Score=32.18  Aligned_cols=55  Identities=24%  Similarity=0.387  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhc
Q 007842          450 YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAP  504 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~  504 (587)
                      ..+|..|+..++..++.++..+  ....+...+.+.+-|  ..+.....|++++..+..
T Consensus       301 ~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         301 YALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            4699999999999999888764  234455555444333  345677888888887765

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=86.63  E-value=21  Score=31.11  Aligned_cols=64  Identities=20%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                      +.+.....+++.-+|+.+...+......   +.....+++.+...+.|++.-||++...+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            3444444444444444444444333322   112333444444444445555555555555555444

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=86.56  E-value=1.3  Score=24.57  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=14.6

Q ss_pred             hHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC
Q 007842          490 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD  525 (587)
Q Consensus       490 ~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d  525 (587)
                      .+|..++.+|+.+..        +...+.+.+.++|
T Consensus         2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        2 LVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             HHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            456666666666532        3344555555444

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=86.56  E-value=42  Score=34.57  Aligned_cols=86  Identities=16%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             HHHHHHhhcccChHHHHhhHHHHHHhhc-CCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHH----hcCCCCccHH
Q 007842          496 LRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE----LTEDPDVDVR  570 (587)
Q Consensus       496 ~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~----l~~d~d~~Vr  570 (587)
                      +..++.+.+.+.++.+ ..++-.+...+ .++...+|.+.+.-++.+++..-++..+..+.|.+..    ++.|+.|-++
T Consensus       462 L~l~~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~  540 (559)
T PF14868_consen  462 LSLLSFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLH  540 (559)
T ss_pred             HHHHHHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHH
Confidence            3344444455555433 44555555555 5566679999999999998877666555666666655    7899999999


Q ss_pred             HHHHHHHHHHHH
Q 007842          571 FFATQAIQSIDH  582 (587)
Q Consensus       571 ~~a~~al~~l~~  582 (587)
                      ..|..|++.+++
T Consensus       541 q~ALeAF~~FAe  552 (559)
T PF14868_consen  541 QHALEAFGQFAE  552 (559)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999886

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=86.53  E-value=2.3  Score=35.55  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhc--
Q 007842          214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL--  289 (587)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l--  289 (587)
                      +.-++|++|.+++-.+.+.+........+++.+...+.| +..+|..+...+.+++...+....  .+.+++.+...+  
T Consensus        39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~  117 (169)
T PF08623_consen   39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK  117 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence            344567777777766666555443344556666666766 667777777777776654322111  223444444443  


Q ss_pred             --CC--------ChHHHHHHHHHhHHHHHhhh
Q 007842          290 --RD--------NEAEVRIAAAGKVTKFCRIL  311 (587)
Q Consensus       290 --~d--------~~~~vr~~a~~~l~~l~~~~  311 (587)
                        ++        ...+..++++++...+...+
T Consensus       118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i  149 (169)
T PF08623_consen  118 KLKENAVKQEIEKQQELIRSVLRAVKALNSKI  149 (169)
T ss_dssp             ---TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred             cCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence              21        12344555666666664443

; PDB: 4A0C_A 1U6G_C.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=86.49  E-value=12  Score=34.07  Aligned_cols=54  Identities=11%  Similarity=0.221  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHhhhhhchHH--HHhhHHHHHHH--hcCCCCccHHHHHHHHHHHHHH
Q 007842          529 NIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~--l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .+|..|+..++..+..++...  ....+...+.+  +-..+.....+.|.++++.+.+
T Consensus       302 alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         302 ALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            466677777766666665542  22334433333  2233344556666666665554

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=86.02  E-value=11  Score=29.36  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~  432 (587)
                      ..++..+..-+.+++|++...++..+..+.+..|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            3455556666666777777777777777777666543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.00  E-value=17  Score=29.62  Aligned_cols=74  Identities=12%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCC
Q 007842          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE  275 (587)
Q Consensus       202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~  275 (587)
                      ..+..+..-++..++.+...|+..|..+...++...    ....++..+.++.+ ..++.||..++..+...+..++.+
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            344444555556677777777777777777776521    22334444444443 456678887888777777776654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.95  E-value=17  Score=29.48  Aligned_cols=96  Identities=11%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             hcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHH
Q 007842          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL  481 (587)
Q Consensus       406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~  481 (587)
                      +.+++|..-..++..+..  ...|    ....+..+...++++++.|...|+..|..+++..|..+.    ...++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            346778765555554432  1112    233556677788899999999999999999999988753    356777777


Q ss_pred             hhccC------CchhHHHHHHHHHHHhhcccC
Q 007842          482 EMINN------PHYLYRMTILRAISLLAPVMG  507 (587)
Q Consensus       482 ~~l~d------~~~~~R~~a~~~l~~l~~~~~  507 (587)
                      .++..      .+..||...+..+..-...++
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            77643      467899999888888776554

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=84.85  E-value=30  Score=31.32  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~  428 (587)
                      -..+.....+.++.+|..++++++.+.-..
T Consensus        45 K~~Il~~~~~~~~gvk~~~iKFle~vIl~q   74 (239)
T PF11935_consen   45 KDRILSLWDSENPGVKLAAIKFLERVILVQ   74 (239)
T ss_dssp             HHHHHHGGGSSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence            344555677788899999999998887654

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=84.36  E-value=3  Score=41.19  Aligned_cols=109  Identities=9%  Similarity=0.076  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH--
Q 007842          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--  509 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~--  509 (587)
                      ..+.+.+++.+.+++..|...+...+.+++-   .+|..+....++..+..++...+...|..+.+.+.++.-.+...  
T Consensus       430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            3477888899999888777777776666643   44556677889999999888888899999999999887655443  


Q ss_pred             --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842          510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                        ...+.=+..++...+||...|....++.+.++.-
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence              2233345678888999999999999999988754

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=84.35  E-value=21  Score=29.10  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCCc-h-h--HHHHHHHHHHHHhh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQ-D-S--VRLLAVEGCAALGK  231 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~-~-~--vr~~a~~~l~~l~~  231 (587)
                      .-++....|..-+.+.++.+...++..+..++++.|...    ....++..+..++.+.. . .  ||..+...+..-+.
T Consensus        39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            335555566666666777777777777777777765422    12224444444443322 1 1  66666666665555


Q ss_pred             hcC
Q 007842          232 LLE  234 (587)
Q Consensus       232 ~~~  234 (587)
                      .+.
T Consensus       119 ~f~  121 (140)
T PF00790_consen  119 AFK  121 (140)
T ss_dssp             HTT
T ss_pred             HHC
Confidence            553

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF05536 Neurochondrin: Neurochondrin

Probab=84.26  E-value=55  Score=33.91  Aligned_cols=175  Identities=12%  Similarity=0.147  Sum_probs=111.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhh-CHHHH-HHhHhHHHHH
Q 007842          254 SWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRIL-NPELA-IQHILPCVKE  326 (587)
Q Consensus       254 ~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~i~~~l~~  326 (587)
                      ....+..++..++.++.  .++.    ..-.-+|.+.+.+...+. .+-..|..+|..++..- |.+.+ ....++.+.+
T Consensus        70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence            34567778888887775  2211    122468888888876665 88888899998888432 22222 2345666666


Q ss_pred             hccCCcHHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h
Q 007842          327 LSSDSSQHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D  392 (587)
Q Consensus       327 ~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~  392 (587)
                      .+.+ ++.....+...+..+....+.+      .....+++.+...+.......+..++..++.+....+.        +
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            6555 5566777777777765555421      22335566666666666666777778888877765521        1


Q ss_pred             hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh
Q 007842          393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG  431 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~  431 (587)
                      .....+...+..++++ ..+..|..++.....+.+..|.+
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            2344555666666655 46788999999888888887743

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.24  E-value=50  Score=33.36  Aligned_cols=249  Identities=13%  Similarity=0.133  Sum_probs=131.6

Q ss_pred             CCChHHHHHHHHHhHHHHHhhhC------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHH
Q 007842          290 RDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLL  360 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~  360 (587)
                      ...+.+-+.+..+.+..+++...      ++.+ -.++..+.-....++++|-.+.......+.+.+..   +.....+-
T Consensus       257 ~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~fr  335 (559)
T KOG2081|consen  257 AGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFR  335 (559)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhH
Confidence            34455566666777776666442      2211 22344445555677788877777666666554321   11222222


Q ss_pred             HHHHHhh-------c------------CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842          361 PIFLSLL-------K------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       361 ~~l~~~l-------~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l  421 (587)
                      |.+.+++       +            ++..+.|......+..+.-.+|.+.-.+.+.-.+.+  ....|+.-++++..+
T Consensus       336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l  413 (559)
T KOG2081|consen  336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFIL  413 (559)
T ss_pred             HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence            3332222       1            122456778888888887777766433333333322  467899999999999


Q ss_pred             HHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHhChHH-HhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842          422 PLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       422 ~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                      ..+++.+.++.  ..++|-+++.+.  +....+|..++..+|.+.+-+.... ..+.+...+...+....  .--++..+
T Consensus       414 ~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~  489 (559)
T KOG2081|consen  414 RAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALA  489 (559)
T ss_pred             HHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHH
Confidence            99998876542  234444444442  3445599999999999987554321 22333444444444433  33334444


Q ss_pred             HHHhhcccChHH--HH---hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          499 ISLLAPVMGSEI--TC---SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       499 l~~l~~~~~~~~--~~---~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      +..+...+....  ..   ..+...+.....+  +..-. .++.+..++.+.+..
T Consensus       490 ~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~lp~~  541 (559)
T KOG2081|consen  490 FHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEAAC-LLQGISLIISNLPAH  541 (559)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCHh
Confidence            444443222110  01   1122222222222  33333 667777776666544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=83.43  E-value=46  Score=32.31  Aligned_cols=118  Identities=16%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 007842          105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA  184 (587)
Q Consensus       105 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~  184 (587)
                      +++..+-.+..+...++.....+-++..+...+..  |..   ++....    ...++...+.+..++.+.++.+-....
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s--r~~---lf~~~a----~~~k~~~~~~fl~ll~r~d~~iv~~~~  135 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS--RVD---LFHDYA----HKLKRTEWLSFLNLLNRQDTFIVEMSF  135 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch--HHH---HHHHHH----HhhhccchHHHHHHHhcCChHHHHHHH
Confidence            44555555555555556666666666655554422  111   111110    012233355566777777787777666


Q ss_pred             HhHHHHHHhhcc---chhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhh
Q 007842          185 SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       185 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~  231 (587)
                      ..+..++.....   ..........+...++. .+...+..++.+|..+..
T Consensus       136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~  186 (442)
T KOG2759|consen  136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR  186 (442)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence            666666554321   11334445555555544 455566667777777654

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=82.46  E-value=38  Score=30.67  Aligned_cols=65  Identities=17%  Similarity=0.071  Sum_probs=37.3

Q ss_pred             HhcCCChHHHHHHHHHHHHHHHhh----Chhhh-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh
Q 007842          405 LAEDRHWRVRLAIIEYIPLLASQL----GVGFF-------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (587)
Q Consensus       405 ~~~~~~~~vR~~~~~~l~~l~~~~----~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      +++|+++.+...++.+...+....    .....       ...+...++..+.+.++.||.++++++..++.....
T Consensus         1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~   76 (239)
T PF11935_consen    1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSP   76 (239)
T ss_dssp             HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS-
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence            356777888888877777776653    11000       122344455556666666777777777766665544

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=82.40  E-value=65  Score=33.37  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       467 ~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .|.+.-.+-.+..+-.++.-.++.+|.+.--+++-+...-+.    -.++..+.+...|.+.+|-.+++.+++-+....
T Consensus       632 Mgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGAGT  706 (878)
T KOG2005|consen  632 MGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT  706 (878)
T ss_pred             hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence            444433344455566667777889999999999888764333    468889999999999999999999999886543

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=81.77  E-value=21  Score=27.86  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=22.7

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~  510 (587)
                      .++..+.+-+++++|.+..-|+..+..+.+.+|..+
T Consensus        37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            344555555566677777777777777777666543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=81.30  E-value=14  Score=28.99  Aligned_cols=70  Identities=19%  Similarity=0.202  Sum_probs=43.7

Q ss_pred             hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHHHHhcC--------CCCccHHHHHHHHHHH
Q 007842          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCLVELTE--------DPDVDVRFFATQAIQS  579 (587)
Q Consensus       513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~~--------d~d~~Vr~~a~~al~~  579 (587)
                      ..++..|.+-++++++.|+..+++.|..++..-.+...     ...++..+.+...        +.-..||..|..+++.
T Consensus        37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~  116 (122)
T cd03572          37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA  116 (122)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence            46677777777777777777777777777766443311     1233444444332        2234689999988887


Q ss_pred             HHH
Q 007842          580 IDH  582 (587)
Q Consensus       580 l~~  582 (587)
                      |-.
T Consensus       117 if~  119 (122)
T cd03572         117 IFS  119 (122)
T ss_pred             Hhc
Confidence            643

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=81.16  E-value=23  Score=27.25  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh
Q 007842          175 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC  238 (587)
Q Consensus       175 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  238 (587)
                      .+..-|+.+..+++.+.+..++  ....+.+...+...+..  ++.|..+++++..+...++++..
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l   90 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL   90 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH
Confidence            5667788889999998884432  12334444444444333  37888899999998888877543

; GO: 0004674 protein serine/threonine kinase activity

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=80.94  E-value=25  Score=27.67  Aligned_cols=71  Identities=15%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh-hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          395 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       395 ~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ...++|.+...++ ....+.|.+++..++.++....-+ ...+.++..+.........  ...++.++..+++..
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            3556777777666 666777777777777776654311 1112222222222222222  355666666666544

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	587
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		2e-09
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		0.0
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		2e-09
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-09
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		0.0
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		2e-09
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		0.0
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		2e-09
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		1e-63
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-04
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		4e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		7e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		7e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		7e-04

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 144/401 (35%), Gaps = 75/401 (18%)
Query: 184 ASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243
           A  LG F   V        ++   E L   ++  VR  AVE   A+     P D  AH +
Sbjct: 70  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 129
Query: 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303
           P++   +    W      A  L+ +C               Y R+    +AE+R      
Sbjct: 130 PLVKRLA-GGDWFTSRTSACGLFSVC---------------YPRVSSAVKAELR------ 167
Query: 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                         Q+     + L SD +  VR A AS +   A +L  D    +++P+F
Sbjct: 168 --------------QYF----RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 209
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
            +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    
Sbjct: 210 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 269
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           L   +G       L       ++D    +R AA++ +K   E    +             
Sbjct: 270 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD------------- 316
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
                                     +  S++LP +     D   ++K  +A V+  L P
Sbjct: 317 ----------------------CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584
           I+ +    + + P  +   +D   +VR      +  ++ V+
Sbjct: 355 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 144/401 (35%), Gaps = 75/401 (18%)
Query: 184 ASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243
           A  LG F   V        ++   E L   ++  VR  AVE   A+     P D  AH +
Sbjct: 69  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303
           P++   +    W      A  L+ +C               Y R+    +AE+R      
Sbjct: 129 PLVKRLA-GGDWFTSRTSACGLFSVC---------------YPRVSSAVKAELR------ 166
Query: 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                         Q+     + L SD +  VR A AS +   A +L  D    +++P+F
Sbjct: 167 --------------QYF----RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
            +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           L   +G       L       ++D    +R AA++ +K   E    +             
Sbjct: 269 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD------------- 315
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
                                     +  S++LP +     D   ++K  +A V+  L P
Sbjct: 316 ----------------------CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584
           I+ +    + + P  +   +D   +VR      +  ++ V+
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/577 (59%), Positives = 439/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/574 (59%), Positives = 437/574 (76%), Gaps = 4/574 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 540
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           I+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 541 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 144/401 (35%), Gaps = 75/401 (18%)
Query: 184 ASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243
           A  LG F   V        ++   E L   ++  VR  AVE   A+     P D  AH +
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303
           P++   +    W      A  L+ +C               Y R+    +AE+R      
Sbjct: 121 PLVKRLA-GGDWFTSRTSACGLFSVC---------------YPRVSSAVKAELR------ 158
Query: 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                         Q+     + L SD +  VR A AS +   A +L  D    +++P+F
Sbjct: 159 --------------QYF----RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 200
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
            +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    
Sbjct: 201 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 260
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           L   +G       L       ++D    +R AA++ +K   E    +             
Sbjct: 261 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD------------- 307
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
                                     +  S++LP +     D   ++K  +A V+  L P
Sbjct: 308 ----------------------CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 345
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584
           I+ +    + + P  +   +D   +VR      +  ++ V+
Sbjct: 346 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 386

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/574 (59%), Positives = 437/574 (76%), Gaps = 4/574 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 3   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 542
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
           I+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 543 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 144/401 (35%), Gaps = 75/401 (18%)
Query: 184 ASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243
           A  LG F   V        ++   E L   ++  VR  AVE   A+     P D  AH +
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303
           P++   +    W      A  L+ +C               Y R+    +AE+R      
Sbjct: 123 PLVKRLA-GGDWFTSRTSACGLFSVC---------------YPRVSSAVKAELR------ 160
Query: 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                         Q+     + L SD +  VR A AS +   A +L  D    +++P+F
Sbjct: 161 --------------QYF----RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 202
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
            +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    
Sbjct: 203 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 262
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           L   +G       L       ++D    +R AA++ +K   E    +             
Sbjct: 263 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD------------- 309
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
                                     +  S++LP +     D   ++K  +A V+  L P
Sbjct: 310 ----------------------CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 347
Query: 544 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584
           I+ +    + + P  +   +D   +VR      +  ++ V+
Sbjct: 348 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 388

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/576 (57%), Positives = 426/576 (73%), Gaps = 4/576 (0%)
Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
           + LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
           A+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
           ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245
            LG+FA  +E  ++K++I+  F +L  D+QDSVRLLAVE C  + +LL  +D  A + P 
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
           +   ++DKSWRVRY VA++  EL +AVGPE T+ DLVPA+  L +D EAEVR AA+ KV 
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361
           +FC  L+ +    +    ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
           +FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           PLLA QLGV FFD+KL +LC  WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541
               +P+YL+R T L  I++L+ V G +IT    LP V+  + D V N++FNVAK LQ +
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKI 540
Query: 542 IPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
            PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 541 GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 150/385 (38%), Gaps = 6/385 (1%)
Query: 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
           +++  D  +++   +RL +++  + +   L  +   + +LP + +   D+   V   +A 
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 264 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323
           QL      VG       L+P    L    E  VR  A   +       +P     H +P 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
           VK L+       R++   +     P +   A   +L   F +L  D+ P VR    SKL 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
           +  +V+ +D +   ++P    LA D    VRL  +E    +A  L     +  +     Q
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQ 243
Query: 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503
             +DK + +R   A+    L +  GPE     + P    +  +     R      +    
Sbjct: 244 AAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFC 303
Query: 504 PVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 559
             + ++    +  S++LP +     D   ++K  +A V+  L PI+ +    + + P  +
Sbjct: 304 ENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFL 363
Query: 560 ELTEDPDVDVRFFATQAIQSIDHVM 584
              +D   +VR      +  ++ V+
Sbjct: 364 AQLKDECPEVRLNIISNLDCVNEVI 388

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  241 bits (614), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 540 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
            + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	587
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	0.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-21
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	7e-19
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	3e-16
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	4e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-17
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	8e-16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-13
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	2e-08
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-07
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	4e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	5e-05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	7e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	9e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	8e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	9e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	9e-05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	1e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  566 bits (1459), Expect = 0.0
 Identities = 342/583 (58%), Positives = 440/583 (75%), Gaps = 4/583 (0%)

Query: 2   AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD 61
           A  D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121
           EVLLA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SD
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
           L   ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241
           +AAS LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A 
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           ++P +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 302 GKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357
            KV +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 417
            LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAI
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 418 IEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477
           IEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I 
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482

Query: 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 537
           P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK 
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542

Query: 538 LQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580
           LQ + PI+D S ++  ++P L +LT+D DVDV++FA +A+  +
Sbjct: 543 LQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  227 bits (580), Expect = 6e-67
 Identities = 96/503 (19%), Positives = 191/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E  + R+ A     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG----CAALGKLLEPQDCVA 240
               +    V P   KTD++  F++L +D +  VR  A       C  L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 96.2 bits (239), Expect = 5e-21
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 2/263 (0%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAE 69
           +  + + + + +  ++      +  ++  LG++ T + L+P       D+  EV L +  
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPL 129
            L      +G  + +  LLP +  L    +  VR   +E +  +  Q+      +    L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 130 VKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLG 188
                    +  R +A      +      +     +      +  D   + R +    + 
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 189 KFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248
             +           ++     +  D   +VR    +    +G +L+     + + P++  
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 249 FSQDKSWRVRYMVANQLYELCEA 271
            +QD+   V+Y     L  L  A
Sbjct: 566 LTQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 85.3 bits (211), Expect = 7e-19
 Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 85/262 (32%)

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
                D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 328 SSDSSQHVRSALASVI-MGMAPLLGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 378
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 439 ALCMQWLQDKVYSIRDAAANNL 460
                 L +    +R A A  L
Sbjct: 226 ------LDEPDPEVRLAIAGRL 241

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 93/301 (30%)

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              CT  + CV  ++   + R                L  +  A  ++  R  A      
Sbjct: 26  TGRCTPGDACVAVESGRQIDR---------FFRNNPHLAVQYLADPFWERRAIA------ 70

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
              S  + L          L +D   +VRR+ A  L +                    L 
Sbjct: 71  VRYSPVEALT--------PLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA-----NQLY 266
            D+   VR+   +                  L  +   + D+ + VR  V       +L+
Sbjct: 108 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLF 152

Query: 267 ELC----EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322
                    V     +     +   + +D E EVR   A ++                  
Sbjct: 153 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------D 197

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
            + EL  D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 198 DLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 241

Query: 383 D 383
            
Sbjct: 242 G 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 94/291 (32%)

Query: 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355
           V + +  ++ +F R  NP LA         +  +D     R+              + + 
Sbjct: 36  VAVESGRQIDRFFR-NNPHLA--------VQYLADPFWERRAIAV-----------RYSP 75

Query: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415
           +E L P    L++D    VR  +  +L +                 +  L  D    VR+
Sbjct: 76  VEALTP----LIRDSDEVVRRAVAYRLPR---------------EQLSALMFDEDREVRI 116

Query: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN-----LKRLAEEFGPE 470
            + + +P                    Q   D+ Y +R           L R   +   +
Sbjct: 117 TVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ 161

Query: 471 ---WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526
                 + +  + L  M  +P    R  +   +                   ++    D 
Sbjct: 162 VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDP 206

Query: 527 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
              ++    +                      +   ++PD +VR      +
Sbjct: 207 DWTVRLAAVE----------------HASLEALRELDEPDPEVRLAIAGRL 241

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 93/637 (14%), Positives = 189/637 (29%), Gaps = 72/637 (11%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--------KELIPFLSENNDDDD- 61
           +  L   + +D  QLR  S   L T+   L    +         K++   L+      + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 62  -----EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
                E L  MA+ L      +  V     +L  L    T     VR + + +L  +   
Sbjct: 148 VSVQLEALDIMADMLSRQGGLL--VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205

Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQ 173
                 VD    L+  L+  +  +   +           A   +   L  I     + C 
Sbjct: 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265

Query: 174 DDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
            D   +R         F          H+ T I    + LT D   +      +  A   
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325

Query: 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRL 288
              +  D  +           D SW+VR   A  L  +              + PA +  
Sbjct: 326 DGGDDDDQGSDDEYSD---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR 382

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKEL 327
            ++ E  V+           +   P                     +  + +I+  + + 
Sbjct: 383 FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNI-----IS 380
             + S   R    +++  +  +L    T  I  L+P  +  L D+     L I     + 
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502

Query: 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------FD 434
            +   +         Q+L+P +V    D  +++    +     L   +            
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562

Query: 435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 489
             +  L    ++     D    +++ A + + ++    G            + +    + 
Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622

Query: 490 LYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
           + R+T ++A++L+A               +P++ +  +     +K      L  LI    
Sbjct: 623 ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682

Query: 547 QSMVEKTIR---PCLVELTEDPDVDVRFFATQAIQSI 580
            S+    I      L  L  + D+ V   A   + ++
Sbjct: 683 DSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 719

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 66.7 bits (161), Expect = 2e-11
 Identities = 57/403 (14%), Positives = 128/403 (31%), Gaps = 34/403 (8%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWR 256
           I ++ E +T  D+D  R +A      L   L+        D    ++ +I+   +DK+  
Sbjct: 8   ISNLLEKMTSSDKD-FRFMATN---DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 314
           V+ +    L  L   V  E     +V      +  ++ ++R  ++  +      L P   
Sbjct: 64  VQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122

Query: 315 ------LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                    + I   +    +              +A ++     LL        +L   
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCL 180

Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L  L      VR   I  L  +    G  +    +   + EL+++         I+ I  
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 424 LASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           ++ Q G    +  +K+  L +++       +R+      +        E  +      ++
Sbjct: 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTII 298

Query: 482 EMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539
            +      +              A          +      +   D    ++   AK L 
Sbjct: 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358

Query: 540 SLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQSI 580
           +++    + + E  KT+ P L+   ++ + +V+     A  S+
Sbjct: 359 AVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 59/421 (14%), Positives = 133/421 (31%), Gaps = 31/421 (7%)

Query: 14   LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAE 69
            L   L+ +   L+L ++  L  + +   +  T   +   L E     ++ D  V      
Sbjct: 655  LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714

Query: 70   ELGVFIPYVG--GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW-Y 126
             L            + +  +L  L  L       ++  A+ ++      +  +   +  Y
Sbjct: 715  FLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGY 772

Query: 127  IPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
            + L++ L    +          +  S          + P      +      +       
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 832

Query: 179  VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238
              R  A               + ++ S+  +      + V+  A     ALG +      
Sbjct: 833  SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAA---SYALGSISVGN-- 887

Query: 239  VAHILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRMDLVPAYVRLLRDNEAE 295
            +   LP ++        + +Y++ + L E+      VG +P   ++    ++     E  
Sbjct: 888  LPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEG 946

Query: 296  VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355
             R   A  + K   I +PE  +  +   +   SS +   V +A+   I      +  D  
Sbjct: 947  TRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI--DPL 1003

Query: 356  IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRV 413
            ++  +  FL  L+D   +VR   +   +         +     ++LP +    + R   +
Sbjct: 1004 LKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELI 1063

Query: 414  R 414
            R
Sbjct: 1064 R 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 15/244 (6%)

Query: 354 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470
             V+   ++ +  L S++     +  +  LC   +      +RD ++  LK +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 471 WAMQHITPQVLEMI---------NNPHYLYRMTILRAISLLAPVMGSEITCS--RLLPVV 519
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 520 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 579
           +         ++      L  L+      +    I   L EL+++  +       Q I +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 580 IDHV 583
           I   
Sbjct: 241 ISRQ 244

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 68/616 (11%), Positives = 165/616 (26%), Gaps = 81/616 (13%)

Query: 43   ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV----- 97
            +     ++  L +   +           +   +  V        +   +  +        
Sbjct: 429  QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 488

Query: 98   EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG---EWFTARVSACG-----LF 149
              + ++  A+  L  I               LV  + A     ++     A       + 
Sbjct: 489  SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVK 548

Query: 150  HIAYPSAP--DILKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAAT---VEPAHL 199
             I     P        ++ ++T   +     D    V+  A S +G+          + L
Sbjct: 549  VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608

Query: 200  KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY 259
               +    E L  +      + A+   A     ++ +  +   +P++ +F +     ++ 
Sbjct: 609  PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 668

Query: 260  MVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316
               + L  L +             ++     L+ +++  V   A   +T   ++    L+
Sbjct: 669  GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728

Query: 317  --IQHILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
                 IL  +  L  S        SA+      +      +     LL +    +  +  
Sbjct: 729  KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 788

Query: 373  DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432
             +          + + +     +       V     +  +   +      L    LG   
Sbjct: 789  ALTH--KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVG 846

Query: 433  FDDKLGA------LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--------------- 471
                L        + ++        ++ AA+  L  ++    PE+               
Sbjct: 847  HHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQ 906

Query: 472  ---------------------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510
                                  +++I   +L+         R  +   +  L  +    +
Sbjct: 907  YLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 966

Query: 511  TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVD 568
                 LP +           + +V   ++  I    Q +    K      ++  EDPD++
Sbjct: 967  -----LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLN 1021

Query: 569  VRFFATQAIQSIDHVM 584
            VR  A     S  H  
Sbjct: 1022 VRRVALVTFNSAAHNK 1037

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLL 289
           LL+P D ++ +     +  ++K W +R      L +L              LV A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 290 -RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGM 346
            +D+   +   A   +    + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 402
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 80.8 bits (199), Expect = 2e-17
 Identities = 32/199 (16%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQD 447
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     +D
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 448 KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505
               +   A   L  LA+     ++       P +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 506 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE----KTIRPCLVEL 561
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 562 TEDPDVDVRFFATQAIQSI 580
             +PD  VR  + +A+ ++
Sbjct: 185 LNEPDPTVRDSSAEALGTL 203

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 53.1 bits (127), Expect = 6e-08
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-----PQDCVAHILPVIVN 248
           ++P  + + +   F D  ++ + ++R  ++E    L KLL             ++  +  
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLE---VLEKLLTDHPKLENGEYGALVSALKK 63

Query: 249 -FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             ++D +  +  M    L  L + +           VP+ +   ++ +  V  A    + 
Sbjct: 64  VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLP 361
                 + E   + I+  +     + +  V+S  A  I          A     ++ L  
Sbjct: 124 AIYASTSLEAQQESIVESLS----NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179

Query: 362 IFLSLLKDEFPDVR 375
             +  L +  P VR
Sbjct: 180 SLVKTLNEPDPTVR 193

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 17/199 (8%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE--NNDDDDEVLLAMAE 69
             D+L+     LR  S+  L  +     +        L+  L +    D +  ++    +
Sbjct: 20  FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79

Query: 70  ELGVFIPYVGGV--EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
            L +    +      +A   +P L      ++  V     E++  I +        +  +
Sbjct: 80  CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIV 139

Query: 128 PLVK------RLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
             +       +     +    ++      +       +  + +     +   +  P VR 
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-----KTLNEPDPTVRD 194

Query: 182 SAASNLGKFAATVEPAHLK 200
           S+A  LG     +    + 
Sbjct: 195 SSAEALGTLIKLMGDKAVT 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 54/321 (16%)

Query: 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161
            + KA +          +    D    L + L          SA  L       A  +  
Sbjct: 6   QKRKASKEYGLYNQ--CKKLNDD---ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAI 60

Query: 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRL 220
                   + C D   + R   A  LG+          + ++ +I  ++  +D+ + VR 
Sbjct: 61  --------EFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRA 109

Query: 221 LAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279
            A+E   +  +  +        I+      + DKS  VR   A  +  + +         
Sbjct: 110 TAIE---STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------- 158

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             +P  + LL+D   +VR  AA  +    +  N +     I  C  E+  D ++ VR   
Sbjct: 159 ATIPLLINLLKDPNGDVRNWAAFAININ-KYDNSD-----IRDCFVEMLQDKNEEVRIEA 212

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
              +             +++L +    LK     V  +II    +        L  ++LL
Sbjct: 213 IIGLSYRKD--------KRVLSVLCDELKKN--TVYDDIIEAAGE--------LGDKTLL 254

Query: 400 PAIVELAED-RHWRVRLAIIE 419
           P +  +        +  + I+
Sbjct: 255 PVLDTMLYKFDDNEIITSAID 275

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQDA 55

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 337
               V   +    D     R   A  + +       E  + +IL       +D S  VR+
Sbjct: 56  ----VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 338 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457
            +P ++ L +D +  VR      I +          +  +    ++ LQDK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 458 NNLKRLAEE 466
             L    ++
Sbjct: 214 IGLSYRKDK 222

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 32/252 (12%)

Query: 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390
           S+ + +   +           K    ++L      LL D     R++    L        
Sbjct: 2   SNTYQKRKASKEYGLYNQ--CKKLNDDELFR----LLDDHNSLKRISSARVLQLRG---- 51

Query: 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 450
                Q  +   +E   D+++  R        L   ++     D+    L    L DK  
Sbjct: 52  ----GQDAVRLAIEFCSDKNYIRRDIGAFI--LGQIKICKKCEDNVFNILNNMALNDKSA 105

Query: 451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510
            +R  A  +  +  ++         I  Q      +     R     AIS         I
Sbjct: 106 CVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAIS--------VI 155

Query: 511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVR 570
                +P++IN  KD   +++   A  +               IR C VE+ +D + +VR
Sbjct: 156 NDKATIPLLINLLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKNEEVR 209

Query: 571 FFATQAIQSIDH 582
             A   +     
Sbjct: 210 IEAIIGLSYRKD 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 45/298 (15%)

Query: 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341
                RLL D+ +  RI++A            +      +    E  SD +   R   A 
Sbjct: 25  DDELFRLLDDHNSLKRISSA---RVLQLRGGQD-----AVRLAIEFCSDKNYIRRDIGAF 76

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401
           ++  +      +  +  +L      L D+   VR   I    Q  +   I   S  ++  
Sbjct: 77  ILGQIKICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKKNPIY--SPKIVEQ 132

Query: 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461
               A D+   VR A    I    S +     D     L +  L+D    +R+ AA  + 
Sbjct: 133 SQITAFDKSTNVRRATAFAI----SVIN----DKATIPLLINLLKDPNGDVRNWAAFAI- 183

Query: 462 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN 521
            + +    +     I    +EM+ + +   R+  +  +S             R+L V+ +
Sbjct: 184 NINKYDNSD-----IRDCFVEMLQDKNEEVRIEAIIGLS--------YRKDKRVLSVLCD 230

Query: 522 ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 578
             K     +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 231 ELKK--NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 89/353 (25%)

Query: 37  ARALG-----EERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91
           ++  G     ++    EL   L   +D +    ++ A  L +      G + A   +   
Sbjct: 11  SKEYGLYNQCKKLNDDELFRLL---DDHNSLKRISSARVLQLR-----GGQDA---VRLA 59

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              C+ +    RD     L +I    +  D V     ++  +                  
Sbjct: 60  IEFCSDKNYIRRDIGAFILGQIKICKKCEDNV---FNILNNM------------------ 98

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
                                 D    VR +A  +  +          K  I+   +   
Sbjct: 99  -------------------ALNDKSACVRATAIESTAQRCKKNPIYSPK--IVEQSQITA 137

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
            D   +VR        A+  + +        +P+++N  +D +  VR   A  +      
Sbjct: 138 FDKSTNVRRATAF---AISVINDKA-----TIPLLINLLKDPNGDVRNWAAFAININ--K 187

Query: 272 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331
                   D+   +V +L+D   EVRI A          L+     + +L  + +    +
Sbjct: 188 YDNS----DIRDCFVEMLQDKNEEVRIEAI-------IGLS-YRKDKRVLSVLCDELKKN 235

Query: 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           +  V   +          LG    +  L  +   L K +  ++  + I KL +
Sbjct: 236 T--VYDDIIEAAG----ELGDKTLLPVLDTM---LYKFDDNEIITSAIDKLKR 279

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 29/179 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +        +    +R  +   +S I     ++ T   LI  L    D + +V    A  
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVI----NDKATIPLLINLL---KDPNGDVRNWAAFA 182

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           +               +      +   +   VR +A+  L     +     ++     L 
Sbjct: 183 IN------INKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK----RVLS---VLC 229

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGK 189
             L     +   + A G   +   +   +L T L        + D   +  SA   L +
Sbjct: 230 DELKKNTVYDDIIEAAG--ELGDKTLLPVLDTMLY-------KFDDNEIITSAIDKLKR 279

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 80.2 bits (197), Expect = 8e-16
 Identities = 77/627 (12%), Positives = 181/627 (28%), Gaps = 73/627 (11%)

Query: 12  AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD---------E 62
              +  L + + ++   + + ++ IA          EL+  + +N   +           
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157

Query: 63  VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCR----IGSQMR 118
            L  M E        +    +  ++        T     VR  A+ +L      I + M 
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
                ++ + +V      E    + +A G            +K  +      L    M  
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277

Query: 179 VRRSAASNLGKFAATV--------------------EPAHLKTDIMSIFEDLTQ------ 212
                AS   +F +T+                          + I  +  +L        
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337

Query: 213 ---DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY---MVANQLY 266
              +D D    ++   C  L         +  +L  +       +WR R    M    + 
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397

Query: 267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILP 322
           +  + V         +P+ + L+ D   +V+   A  + +    +   +  Q     ++ 
Sbjct: 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
                  D  +   +   ++I            +EQL     S + + +P +   +I   
Sbjct: 458 ACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPALVDGLIGAA 507

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGAL 440
           ++++          S   A+  + E     V          +  +LG  +   +++L   
Sbjct: 508 NRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE 564

Query: 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAI 499
             Q LQ+   +I    A  +++      P      +      ++           +  AI
Sbjct: 565 DAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAI 622

Query: 500 SLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIR 555
           S LA  +G           P ++ A       +       +  +   +++        + 
Sbjct: 623 SALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM 682

Query: 556 PCLVELTEDPDV--DVRFFATQAIQSI 580
             L ++  +P+   +++         I
Sbjct: 683 NVLAQMISNPNARRELKPAVLSVFGDI 709

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 84/586 (14%), Positives = 188/586 (32%), Gaps = 64/586 (10%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE-NNDDDDEVLLAM 67
           I  L     +++ ++R N  R L  +     +        ++ ++ +   D D+ V L  
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276

Query: 68  AEELGVF----IPYVGGVEHAHVLLPPLETLCTVEETCVRD------------------- 104
            E         I     V H   L+P L       +  +                     
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336

Query: 105 --KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162
             K   +   + + +   +L+   +PL+K L     +  + S   +           +  
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396

Query: 163 ELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            L  +   L Q   D   +VR      L ++A  V      T +  +  +L +   DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456

Query: 220 LLAVEGCAALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274
            +    C+A   L E         +A+IL  +V        +   ++ + +  L ++VG 
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 334
              + + +   +  L              + K+  + + +  +  +L C+  +++     
Sbjct: 517 HLNKPEYIQMLMPPL--------------IQKWNMLKDEDKDLFPLLECLSSVATALQSG 562

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 392
                  V      L+ K      L        +    D  +  +  L  + + +G +  
Sbjct: 563 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622

Query: 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK 448
             +   ++L  + +  +D+   VR +    +  L                 +    L  +
Sbjct: 623 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682

Query: 449 VYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMT--ILRAISLLAP 504
             S+ + A   +  ++ + G E    +  +  Q++E+IN P+    +       I  L  
Sbjct: 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742

Query: 505 VMGSEITCSRLLPVVINASKDRVPNIKFNVAK--VLQSLIPIVDQS 548
           V   E+     L   I      + NI+ N  K    + +  ++  +
Sbjct: 743 VCPQEVAPM--LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 18/275 (6%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA----NQLYELCEAVGPEPTRMDLV 282
             L +L +  D   + L  ++   + +    R +      N +    +   P      + 
Sbjct: 35  QKLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF-PNGVTDFIK 92

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSA 338
              +  + D+   +R      +T           P+L +  +   +     ++ +    A
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDYNTCEGAFGA 151

Query: 339 LASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395
           L  +    A +L  D     +  ++P FL   K   P +R + ++ ++Q        L+ 
Sbjct: 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211

Query: 396 --QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS 451
              S +  +  LA D    VR  +   + +L              +    +Q  QD+  +
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
           +   A      LAE+   +  +    P+++ ++ N
Sbjct: 272 VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILR 497
           + C+  + D    IR      +  +A +   + W    + P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 498 AISLLAPVMGSEIT-------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 550
           A+  +       +         + ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 551 EK--TIRPCLVELTEDPDVDVRFFATQAIQSI 580
               +    L  L  D + +VR    +A+  +
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVML 242

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 67.8 bits (165), Expect = 7e-13
 Identities = 37/257 (14%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310
           +++ + +R  +AN    L + +        ++   + LL D+   V   A   +    + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490
            + +  L  + +  L D    +R +A   L  LA        ++ +  + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 491 YRMTILRAISLLAPVMG 507
              T+   IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 15/260 (5%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIP 76
           ++ ++  +R  ++     + + L   +  + ++  L E  +DD   V+      + V   
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 77  YVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIP-LVKRLA 134
                +    +L  L +L    E   +  +  ++  ++  +  + +LV   IP L     
Sbjct: 62  --TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMIPVLFANYR 117

Query: 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194
            G+  T    +  L  IA  + P ++ + +R   + L        + +A + +       
Sbjct: 118 IGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMG--E 173

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254
                    +    +L  D  + VR  AVE   AL  L    D +  ++   +    D S
Sbjct: 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTS 230

Query: 255 WRVRYMVANQLYELCEAVGP 274
             V   V   +  L    G 
Sbjct: 231 SLVNKTVKEGISRLLLLEGH 250

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 42/260 (16%), Positives = 97/260 (37%), Gaps = 14/260 (5%)

Query: 98  EETCVRDKAV--ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155
           EE  +R+     E L +I    +  +       L++ L    W   + +   +  IA  +
Sbjct: 6   EEFDIREALANGEHLEKILIMAKYDE--SVLKKLIELLDDDLWTVVKNAISIIMVIA-KT 62

Query: 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215
             D+ +  L+ +++ L + +   + +  A   G+ A   +P  +K+ I  +F +    D 
Sbjct: 63  REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSMIPVLFANYRIGD- 120

Query: 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275
           +  ++        + K       +A I+   ++    K+   +    N +  + E    +
Sbjct: 121 EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK 177

Query: 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335
                 +P  + LL D +  VR +A         +      ++ ++    E  +D+S  V
Sbjct: 178 YVN-PFLPRIINLLHDGDEIVRASAV---EALVHLATLNDKLRKVVIKRLEELNDTSSLV 233

Query: 336 RSALASVIMGMAPLLGKDAT 355
              +   I  +  L G  ++
Sbjct: 234 NKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 30/215 (13%), Positives = 82/215 (38%), Gaps = 8/215 (3%)

Query: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
                 ++  L  L     + +   +    A    ++A+E      ++ + P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174

Query: 547 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 581
                    P ++ L  D D  VR  A +A+  + 
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 45/238 (18%)

Query: 228 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 287
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLIK 52

Query: 288 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347
            L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465
           D    VR +  + +     ++G     +++ A   +  +      R  A N L+    
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 40/215 (18%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +  QDD   VRR+AA  LGK         L            +D+   VR  A +   AL
Sbjct: 21  KNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---AL 69

Query: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 289
           G++ + +      +  ++   +D+   VR   A  L ++ +           V   ++ L
Sbjct: 70  GQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKAL 116

Query: 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349
           +D +  VRIAAA         +  E A++ ++  +K    D    VR + A  +  +   
Sbjct: 117 KDEDWFVRIAAA----FALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGG- 167

Query: 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
                  E++      L +      R   ++ L+ 
Sbjct: 168 -------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 68

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L   L        +D+   VR+SAA  LG+         L        
Sbjct: 69  LGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAVEPL-------- 112

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 113 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 164

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 165 IGGE--------RVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 35/226 (15%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 416
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 417 IIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 474
             + +         G   D+  +  L ++ L+D+   +R +AA  L ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 534
                +++ + +  +  R+    A+         EI   R +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 535 AKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580
           A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 47  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 99

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 100 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 144

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 145 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 196

Query: 191 AATV 194
            + +
Sbjct: 197 KSLI 200

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)

Query: 265 LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324
            +       PE      V  Y++ L+D+   VR AAA  + K    +  E A++ ++  +
Sbjct: 4   SHHHHHHTDPE-----KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVEPLIKAL 54

Query: 325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           K    D    VR A A+  +G    +G +  +E L+      LKDE   VR +    L Q
Sbjct: 55  K----DEDAWVRRA-AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQ 102

Query: 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444
           +          +  +  +++  +D  W VR+A    +  +  +  V    + L       
Sbjct: 103 IG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA---- 146

Query: 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502
           L+D+   +R +AA+ L  +  E         +   + ++        R   +  +   
Sbjct: 147 LKDEDGWVRQSAADALGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 73

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L         +  +D+   VR+SAA  LG+         L        
Sbjct: 74  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 117

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 118 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 169

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 170 IGGE--------RVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 40/212 (18%)

Query: 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232
           QDD   VRR+AA  LGK         L            +D+   VR  A +   ALG++
Sbjct: 29  QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQI 77

Query: 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292
            + +      +  ++   +D+   VR   A  L ++ +           V   ++ L+D 
Sbjct: 78  GDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDE 124

Query: 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352
           +  VRIAAA         L  E+  +  +  + +   D    VR + A  +  +      
Sbjct: 125 DWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 172

Query: 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
               E++      L +      R   ++ L+ 
Sbjct: 173 ----ERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 45/237 (18%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286
           AA     +P+      + + +   QD S+ VR   A  L      +G E      V   +
Sbjct: 10  AAAPLRADPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLI 56

Query: 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346
           + L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G 
Sbjct: 57  KALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ 107

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
              +G +  +E L+      LKDE   VR+     L ++          +  +  +++  
Sbjct: 108 ---IGDERAVEPLIK----ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKAL 152

Query: 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463
           +D    VR +  + +     ++G     +++ A   +  +      R  A N L+  
Sbjct: 153 KDEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 48/236 (20%)

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
           APL      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLA 464
           +D    VR A  + +         G   D+  +  L ++ L+D+   +R +AA  L ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 524
           +E             +++ + +  +  R+    A+         EI   R +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALK 153

Query: 525 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580
           D    ++ + A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 104

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 105 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 149

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 201

Query: 191 AATVEPAH 198
            +     H
Sbjct: 202 KSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 7e-09
 Identities = 75/471 (15%), Positives = 143/471 (30%), Gaps = 156/471 (33%)

Query: 193 TVEPAHLKTDIMSIFE-----DL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246
           T E  +   DI+S+FE     +   +D QD  +  ++     +  ++  +D V+  L + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 247 VNFSQDKSWRVRYMVANQL---YE-LCEAV-----GPEPTRMDLVPAYVRLLRDNEAEVR 297
                 +   V+  V   L   Y+ L   +      P       +    RL  DN+    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---- 124

Query: 298 IAAAGKVTKF--CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 352
                   K+   R+  P L ++  L    EL    +++V      +I G+    GK   
Sbjct: 125 -----VFAKYNVSRL-QPYLKLRQAL---LEL--RPAKNV------LIDGVLG-SGKTWV 166

Query: 353 ------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDLL 394
                    ++  +   IF L+L     P+  L ++ KL          + +    I L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 395 SQSLLPAIVELAEDR----------------HWRV------------------RLAIIEY 420
             S+   +  L + +                 W                     L+    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +      +    D++ +L +++L  +            + L  E      +    P+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRP-----------QDLPRE------VLTTNPRR 329

Query: 481 LEMI-----NNP-------HYLY-RMTILRAISL--LAPVMGSEI-----TCSRLLPVVI 520
           L +I     +         H    ++T +   SL  L P   +E        S + P   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLS-VFP--- 382

Query: 521 NASKD-RVPNIKFNVAKVLQSL----IPIVDQSMVEKTIRPCLVELTEDPD 566
                  +P        +L  +    I      +V K  +  LVE  + P 
Sbjct: 383 ---PSAHIP------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPK 422

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 46/354 (12%), Positives = 122/354 (34%), Gaps = 32/354 (9%)

Query: 224 EGCA-ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  A  L ++         I+  +V F     W+V++     L  L E V  +     L 
Sbjct: 246 DAAAYLLSRIYPLIG-PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD---GLC 301

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              V LL   + ++++ +A  +  F    + +L ++     ++     S      +  S 
Sbjct: 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----VSKTSN 356

Query: 343 IMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
           +  +  +  ++  +    + L           P+VR +I++ +  +++     L+++ +L
Sbjct: 357 LSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVL 416

Query: 400 ----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQWLQDKV 449
                 I E+A  +  + R  + +  I    + +G   +     DD +    + + +  +
Sbjct: 417 IEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGI 475

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             +        + L  E   +  +  +   +    +   ++     ++A+    P   + 
Sbjct: 476 NVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTPYTPAN 534

Query: 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE 563
           I         +    DR  ++K    K  +  +       +   + P   + T 
Sbjct: 535 IE-------ELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTR 581

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 52/368 (14%), Positives = 102/368 (27%), Gaps = 33/368 (8%)

Query: 21  DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF------ 74
            +     ++ + ++ IA A        ELIP L  N  + +         L         
Sbjct: 101 TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160

Query: 75  IPYVGGVEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVKR 132
           I      + ++ +L  +      EE    V+  A  +L       + +   +     + +
Sbjct: 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220

Query: 133 LAAGEWFT----ARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQDDMPMVRRSAA 184
           +            RV+A              ++T +     +I  +  + D+  V     
Sbjct: 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
                            D+     +  +  +            AL  L+     +   L 
Sbjct: 281 EFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLT 331

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAG 302
                  D  W         L  L      +  P  +  +  +   +++ +   R AA  
Sbjct: 332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH---IKNPDWRYRDAAVM 388

Query: 303 KVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359
                     P      +   +P + EL  D S  VR   A  +  +  LL + A  +  
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448

Query: 360 LPIFLSLL 367
           L   L  L
Sbjct: 449 LAPLLQCL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 37/333 (11%)

Query: 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-----VRLLAVEGCA 227
            +    ++ S    +G     ++P  L+     I   + Q  +       V+L A     
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199

Query: 228 ALGKLLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDL 281
              +  +           I+ V+   +Q    RVR      L ++        E      
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259

Query: 282 VPAY-VRLLRDNEAEVRIAAAGKVTKFCR------ILNPELAIQHILPCVKELSSDSSQH 334
           + A  +  ++ +  EV +      +  C       I   E A Q   P        S  +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFY 314

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
            + AL  ++  +   L K    +           D+  +        L  +      D++
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV 364

Query: 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYS 451
              +LP I E  ++  WR R A +     +            +       ++ ++D    
Sbjct: 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
           +RD AA  + R+ E              +L+ +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 76/459 (16%), Positives = 147/459 (32%), Gaps = 80/459 (17%)

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L   A  + P  L      +   L       V R AA    K + T +   +K      +
Sbjct: 25  LERAAVENLPTFLV----ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80

Query: 208 EDLTQDDQDSVRLLAVEG--------------CAALGKLLEPQDCVAHILPVIVNF--SQ 251
             +  + +  V+   ++                A +     P +    ++P +V    + 
Sbjct: 81  LAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140

Query: 252 DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEA--EVRIAAAGKVTK 306
           + +  ++      +  +C+ + PE  +    +++ A ++ +R  E    V++AA   +  
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200

Query: 307 FCRILNPELAIQH----ILPCVKELSSDSSQHVRSALASV---IMGMAPLLGKDATIEQL 359
                      +     I+  V E +      VR A       IM +     +      L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260

Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQV-NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
             I +  +K +  +V L  I     V ++ + + + +               +  + A+ 
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320

Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478
             +P+L   L     +D           D  ++   AA   L  LA     +  + H+ P
Sbjct: 321 YLVPILTQTLTKQDEND----------DDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLP 369

Query: 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 538
            + E I NP + YR   + A   +                                    
Sbjct: 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ---------------------------- 401

Query: 539 QSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 577
             L P+V Q+M      P L+EL +DP V VR  A   +
Sbjct: 402 --LKPLVIQAM------PTLIELMKDPSVVVRDTAAWTV 432

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 11/211 (5%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262
           +  +F+ L+    D+   +A E  + L   +   D   H    +    +DK      M A
Sbjct: 16  LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75

Query: 263 NQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
                    + P  EP  + LVPA      + + E++  A+  +      +NP  AI+ +
Sbjct: 76  VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-AIKAL 134

Query: 321 LPCVKELSSDSSQHVRSALASV-IMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRL 376
           LP +   +   +   +  +A +          KD     + +L+P+    + D   +V+ 
Sbjct: 135 LPHLTN-AIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193

Query: 377 NIISKLDQVNQVIG---IDLLSQSLLPAIVE 404
              + + +  + +    I+    SL+  I +
Sbjct: 194 AATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 22/196 (11%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 404 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457
           E      W+ R+  +E  +  +L+     +     + + LG       +D        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 458 NNLKRLAEEFGPEWAMQH----ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513
            +++ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 514 RL---LPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSMVEKTIRPCLVELTED 564
           R    L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 565 PDVDVRFFATQAIQSI 580
               +R    ++   +
Sbjct: 203 TQPAIRTIGFESFAIL 218

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYV 286
           +L  +  +  +            W+ R     + ++   +   +         +L+  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 287 RLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSALAS 341
            ++ +D   +    AA  V   C  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 342 VIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 392
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 22/181 (12%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 210 LTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQL 265
           + +D       LA +    +   L+        V+ +   +++ +++K   V   +   L
Sbjct: 69  IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKAL 128

Query: 266 YELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAG------KVTKFCRILNPELA 316
             +C+   P  +     D++   +  ++    ++R+          K  K          
Sbjct: 129 LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188

Query: 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPD 373
              ++P V ++ +D+   +R+        +  + G +    T+E L  +    +++    
Sbjct: 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248

Query: 374 V 374
           +
Sbjct: 249 L 249

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 51.0 bits (121), Expect = 9e-07
 Identities = 57/385 (14%), Positives = 116/385 (30%), Gaps = 26/385 (6%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN---NDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L  N    +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131
            +      + ++ +L  +      EE    V+  A  +L       + +   +     + 
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 132 RLAAGEWFT----ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           ++            RV+A              ++T +      +  + M       A   
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
            +F + V     + D+     +  +  +            AL  L+     +   L    
Sbjct: 280 IEFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLTKQD 334

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKV 304
               D  W         L  L      +     ++P     +++ +   R AA    G +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCI 393

Query: 305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLL 360
            +       +  +   +P + EL  D S  VR   A  +  +  LL      D  +  LL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQV 385
              +  L  E P V  N+      +
Sbjct: 454 QCLIEGLSAE-PRVASNVCWAFSSL 477

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 27/144 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           L P  +    E   VR     +L R+G +  E        PL++ L+  +W     +A  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFE--------PLLESLSNEDWRIRGAAAWI 65

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           + +     A + L         +L +DD   VR  AA +L +       A +        
Sbjct: 66  IGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGGERVRAAM-------- 109

Query: 208 EDLTQDDQDSVRLLAVEGCAALGK 231
           E L +      R +AV     L  
Sbjct: 110 EKLAETGTGFARKVAVN---YLET 130

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341
           +      + D    VR   +  +++    +  E A + +L  +     +    +R A A+
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSR----MGDE-AFEPLLESLS----NEDWRIRGA-AA 63

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401
            I+G       +  +E L+     LL+D+   VR      L+Q    IG     + +  A
Sbjct: 64  WIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GERVRAA 108

Query: 402 IVELAEDRHWRVRLAIIE 419
           + +LAE      R   + 
Sbjct: 109 MEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 21/158 (13%), Positives = 42/158 (26%), Gaps = 27/158 (17%)

Query: 33  LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92
           + +                 +    D++  V   ++  L                  PL 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHM---ADENKWVRRDVSTALS---------RMGDEAFEPLL 48

Query: 93  TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152
              + E+  +R  A   +     +      V+   PL+K L     F    +A  L  I 
Sbjct: 49  ESLSNEDWRIRGAAAWIIGNFQDE----RAVE---PLIKLLEDDSGFVRSGAARSLEQIG 101

Query: 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
                  ++        +L +      R+ A + L   
Sbjct: 102 GERVRAAME--------KLAETGTGFARKVAVNYLETH 131

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKF 307
            D++  VR  V+  L  + +               +  L + +  +R AAA   G     
Sbjct: 22  ADENKWVRRDVSTALSRMGDEA---------FEPLLESLSNEDWRIRGAAAWIIGN---- 68

Query: 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367
                 E A++ ++  ++    D S  VRS  A  +      +G +     +      L 
Sbjct: 69  ---FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LA 113

Query: 368 KDEFPDVRLNIISKLD 383
           +      R   ++ L+
Sbjct: 114 ETGTGFARKVAVNYLE 129

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 75/542 (13%), Positives = 162/542 (29%), Gaps = 81/542 (14%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLAAGEWFT 140
           +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ +       
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVE 72

Query: 141 ARVSACG-LFHIAYPSAPDILKTELRSIYT--QLCQDDMPMVRRSAA---SNLGKFAATV 194
                 G L ++++     +   +   I    ++    +  V   A     NL       
Sbjct: 73  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHI-----LPVIVN 248
           + A      +     L          +       L  L    Q+    I        +VN
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 249 FSQDKSWR-VRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             +  ++  + +  +  L  L      +P       + A    L D    +       + 
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA-------PLLGKDATIEQ 358
                   +  ++ +L  + +L      +V +  A ++  +         ++ +   IE 
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 359 LLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HW 411
           L+     L   +  D+       L  ++   Q  ++    +     LP +V+L     HW
Sbjct: 310 LVR--TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 412 RVRLAIIEYIPLLAS---------QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462
            +  A +  I  LA          + G       +  L  Q L       +   +    +
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGA------IPRLV-QLLVRAHQDTQRRTSMGGTQ 420

Query: 463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVI 520
                G          +++E               A+ +LA  + +   I     +P+ +
Sbjct: 421 QQFVEGVR------MEEIVE-----------GCTGALHILARDVHNRIVIRGLNTIPLFV 463

Query: 521 NASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 578
                 + NI+   A VL  L    +  +++  +     L EL    +  V  +A   + 
Sbjct: 464 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523

Query: 579 SI 580
            +
Sbjct: 524 RM 525

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 14/183 (7%)

Query: 139 FTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQDDMPMVRRSAASNLGKFAATVE 195
           F   ++A         ++P  L +    +    T    +  P                + 
Sbjct: 60  FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR 119

Query: 196 PAHLKTDIMSIFEDLTQ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249
                     +   +        + +D++R    +    L  ++ P      + P++++ 
Sbjct: 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDA 175

Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308
            + K+ R R      +       G  P + + +       + D +  VR AA   +    
Sbjct: 176 LKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235

Query: 309 RIL 311
           +  
Sbjct: 236 KFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 26/212 (12%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASV 342
           +  L   + +  +AA   + +     +P   + +    +K  +    +++      +  +
Sbjct: 52  MSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLEL 110

Query: 343 IMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 396
              +  L+           +   +P  L    +   ++R ++   ++ ++ V+G   ++ 
Sbjct: 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170

Query: 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-KLGALCMQWLQDKVYSIRDA 455
            LL A+    + ++ R R   +  I    +  G+       +      ++ DK  ++R+A
Sbjct: 171 MLLDAL----KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNA 226

Query: 456 AANNLKRLAEEFGPEWA--MQHITPQVLEMIN 485
           A N L    +  G +       +  +   ++ 
Sbjct: 227 AINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 49/299 (16%), Positives = 88/299 (29%), Gaps = 29/299 (9%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV 73
                  D   L   +   +   A         + L   L    +D      A A  +G+
Sbjct: 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL---YNDSATSGEAAALGMGL 498

Query: 74  FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAV-ESLCRIGSQMRESDLVDWYIPLVKR 132
            +   G  E  H +    +   T      R  AV  +L   G Q    +L D    L+ +
Sbjct: 499 CMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALINYGRQ----ELAD---DLITK 549

Query: 133 LAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192
           + A +    R        +AY    +     ++ +      D    VRR+A   LG    
Sbjct: 550 MLASDESLLRYGGAFTIALAYAGTGNNSA--VKRLLHVAVSDSNDDVRRAAVIALGFVLL 607

Query: 193 TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
                   T +  I + L++     VR     G A    +      +   + V+   ++D
Sbjct: 608 RDY-----TTVPRIVQLLSKSHNAHVR----CGTAFALGIACAGKGLQSAIDVLDPLTKD 658

Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311
               VR      L  +      E       P    + ++  + +       + KF   +
Sbjct: 659 PVDFVRQAAMIAL-SMILIQQTEKLN----PQVADINKNFLSVITNKHQEGLAKFGACV 712

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 75/535 (14%), Positives = 160/535 (29%), Gaps = 67/535 (12%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLAAGEWFT 140
           +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ +       
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVE 208

Query: 141 ARVSACG-LFHIAYPSAPDILKTELRSIYT--QLCQDDMPMVRRSAA---SNLGKFAATV 194
                 G L ++++     +   +   I     +    +  V   A     NL       
Sbjct: 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHI-----LPVIVN 248
           + A      +     L          +       L  L    Q+    I        +VN
Sbjct: 269 KMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVN 325

Query: 249 FSQDKSWR-VRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             +  ++  + +  +  L  L      +P       + A    L D    +       + 
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA-------PLLGKDATIEQ 358
                   +  ++ +L  + +L      +V +  A ++  +         ++ +   IE 
Sbjct: 386 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 445

Query: 359 LLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HW 411
           L+     L   +  D+       L  ++   Q  ++    +     LP +V+L     HW
Sbjct: 446 LVR--TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 412 RVRLAIIEYIPLLASQLGVGFFDDKLGAL--CMQWLQDKVYSIRDAAANNLKRLAEEFGP 469
            +  A +  I  LA          + GA+   +Q L       +   +    +     G 
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563

Query: 470 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRV 527
                    +++E               A+ +LA        I     +P+ +      +
Sbjct: 564 R------MEEIVE-----------ACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 528 PNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580
            NI+   A VL  L    +  +++  +     L EL    +  V  +A   +  +
Sbjct: 607 ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.2 bits (103), Expect = 9e-05
 Identities = 33/268 (12%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             + A + L  D +  +R  A  ++ +F      E   +      + L +D S       
Sbjct: 65  SAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE----F 117

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
             V   +  +   DA  +  L    S +      VR   I  L    + +  ++L++ + 
Sbjct: 118 NLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175

Query: 400 PAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV 449
             I+  ++          + + + I+  +  L +  G     +   +   L   +     
Sbjct: 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDP 235

Query: 450 YSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEMINNPHYL-YRMTILRAIS 500
             + D      ++    F              + + P +  +      L  ++ +L+ ++
Sbjct: 236 DCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 501 LLAPVMGSEITCSRLLPVVINASKDRVP 528
            ++   G        L  + +   + +P
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            K  L  +  ++ +D+   V+   A    +F   +E        + I ++  +      R
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTR 156

Query: 220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
             A EG          ++     +  I +  +D S  VR  V N L
Sbjct: 157 RAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 28/263 (10%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD------IMSIFEDLTQDDQDSVR---L 220
           ++  +     +R A   L +   T+ P    +       I  +   L QD         L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC---EAVGPEPT 277
           +A+   A++ + +  +      +  I  +  +    +    A  L  L    + +     
Sbjct: 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG 662

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAG-------KVTKFCRILNPELAIQHILPCVKELSSD 330
             D V     L  D + E   A AG          K C  +   LAI   L  +  L ++
Sbjct: 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI---LAIASWLDILHTLIAN 719

Query: 331 SSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
            S  V+     +I+ M     +      +  I +LL     L  D     R      L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 385 VNQVIGIDLLSQSLLPAIVELAE 407
             +   I+    + +P +     
Sbjct: 780 AERYRIIERSDNAEIPDVFAENS 802

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 47/367 (12%), Positives = 99/367 (26%), Gaps = 46/367 (12%)

Query: 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPD 158
              R             +  + L+      V  L   +    +  +   L +IA  ++  
Sbjct: 79  QAARKLLSREKQPPIDNIIRAGLIP---KFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135

Query: 159 ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS---------- 205
              ++       +  L       +   A   LG  A   + +  +  ++           
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIKHGAIDPLLAL 193

Query: 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVA 262
           +                    + L +   P    D V  ILP +V         V     
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---EL 315
             +  L +    E   M     +VP  V+LL   E  +   A   +       +    ++
Sbjct: 254 WAISYLTD-GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312

Query: 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFP 372
                L     L ++   +++      +  +        +      L+P  + +L     
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372

Query: 373 DVRL-------NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIP 422
             +        N  S       V    L+   ++  ++ L   +  ++    L  I  I 
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVY---LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429

Query: 423 LLASQLG 429
             A +LG
Sbjct: 430 QAAEKLG 436

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	587
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.95
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.91
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.88
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.87
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.85
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.83
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.8
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.79
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.79
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.78
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.78
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.76
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.76
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.75
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.72
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.7
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.7
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.68
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.68
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.66
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.65
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.64
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.64
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.63
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.62
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.61
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.6
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.59
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.58
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.56
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.56
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.54
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.52
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.52
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.52
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.5
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.5
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.48
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.47
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.43
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.43
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.42
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.39
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.32
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.3
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.21
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.19
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.18
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.16
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.16
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.15
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.14
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.12
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.11
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.09
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.09
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.08
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.03
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.95
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.94
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.93
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.89
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.83
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.74
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.74
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.71
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.28
3grl_A	651	General vesicular transport factor P115; vesicle t	98.24
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.02
3grl_A	651	General vesicular transport factor P115; vesicle t	97.97
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.82
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.31
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.29
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.19
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.94
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.88
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.81
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	96.66
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.97
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	93.43
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.39
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	92.41
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.39
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.27
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	92.02
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	91.85
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	90.44
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	90.24
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	90.15
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.02
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	89.69
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	88.14
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	87.78
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	86.97
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.58
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	86.35
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	85.4
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.17
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	83.74
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.7
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	81.6
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.87
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.72

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=5.4e-64  Score=525.08  Aligned_cols=579  Identities=59%  Similarity=0.962  Sum_probs=542.6

Q ss_pred             CCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcc
Q 007842            3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE   82 (587)
Q Consensus         3 ~~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~   82 (587)
                      ++||+++|+..|++.++|+|+++|..|++.+++++..+|++..+++++|++.+..++++++|..+++.++.+...+|+..
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            57899999999999999999999999999999999999999999999999998778888999999999999998888878


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHH
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  162 (587)
                      +...+++.|..+..++++.||+.|..++..++..++++.+.+.++|++..+.+++++..|..++.+++.++++.++..+.
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            88999999999999999999999999999999999988888899999999999989999999999999999999888889


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhch
Q 007842          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (587)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (587)
                      .+++.+..+++|+++.||..++++++.++...+.+.+.+.++|.+..+++|+++.||..++.+++.++..++++...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998877777889999999999999999999999999999998887777889


Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHHH
Q 007842          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ  318 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~  318 (587)
                      +|.+..+++|++|.||..++++++.++..++++.....++|.+..+++|+++.||..++.+++.++..++.+    .+.+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  323 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence            999999999999999999999999999988766555679999999999999999999999999999988765    5678


Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      .++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+.+.+.+
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  403 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999998887777889999999999999999999999999999988877767889


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      +|.+..+++|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||.+|+.+++.++..+|.++..+.++|
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp  483 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP  483 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            99999999999999999999999999999998888888999999999999999999999999999999999888889999


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHH
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  558 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l  558 (587)
                      .+..+..++++.+|.+++.+++.++..+|.+.+.+.++|.+.+.++|++++||..++++++.+...++.+...+.+.|.+
T Consensus       484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l  563 (588)
T 1b3u_A          484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL  563 (588)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence            99999999999999999999999999999888889999999999999999999999999999999998887778899999


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHH
Q 007842          559 VELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       559 ~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .++.+|+|++||..|..|++.+.
T Consensus       564 ~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          564 EKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCchhHHHHHHHHHHHhh
Confidence            99999999999999999999875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=1.2e-48  Score=408.88  Aligned_cols=529  Identities=21%  Similarity=0.290  Sum_probs=476.7

Q ss_pred             hccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh
Q 007842           55 ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (587)
Q Consensus        55 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  134 (587)
                      ...+++.++|..+++.++.++...|.......++|.|.... ++++.||..+..+++.+...++.......++|.+..+.
T Consensus        18 ~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~   96 (588)
T 1b3u_A           18 ELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLA   96 (588)
T ss_dssp             HTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHT
T ss_pred             HhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            34467789999999999887766665455677889887766 77889999999999998887766666778999998888


Q ss_pred             cCCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC
Q 007842          135 AGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD  213 (587)
Q Consensus       135 ~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d  213 (587)
                      .+++..+|..++..++.+....+++ ....++|.+..+.+++++.+|..++..++.++...+ +...+.++|.+..+++|
T Consensus        97 ~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l~~d  175 (588)
T 1b3u_A           97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSD  175 (588)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHHHTC
T ss_pred             hCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhCC
Confidence            8888899999999999999888765 566789999999999999999999999999988775 34567899999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh
Q 007842          214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE  293 (587)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~  293 (587)
                      +++.||..+++.++.++..++++...+.++|.+..+++|+++.||..++.+++.++..++++.....++|.+..+++|++
T Consensus       176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~  255 (588)
T 1b3u_A          176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS  255 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence            99999999999999999998887677889999999999999999999999999999988765555678999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh----HHHHhHHHHHHHhhcC
Q 007842          294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKD  369 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d  369 (587)
                      |.||..++.+++.++...+++.+.+.++|.+.++++|+++.||..++.+++.++..++.+    .+.+.++|.+..+++|
T Consensus       256 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d  335 (588)
T 1b3u_A          256 WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD  335 (588)
T ss_dssp             HHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence            999999999999999998888777889999999999999999999999999999888765    5678899999999999


Q ss_pred             CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCc
Q 007842          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV  449 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  449 (587)
                      .++.||..++.+++.++..+|.+...+.++|.+..+++|+++.+|..++.+++.+...++.+.+.+.++|.+...+.|++
T Consensus       336 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~  415 (588)
T 1b3u_A          336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK  415 (588)
T ss_dssp             SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999887666788999999999999999999999999999988887777889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChh
Q 007842          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN  529 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~  529 (587)
                      |.+|..++.+++.+...+|.+++.+.++|.+...+.|+++.+|..++.+++.++..+|.+++.+.++|.+..+.+|+++.
T Consensus       416 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~  495 (588)
T 1b3u_A          416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL  495 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHH
T ss_pred             chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHH
Confidence            99999999999999999998877778999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          530 IKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       530 vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      +|..++.+++.++..++.+.+...++|.+.+++.|++++||..+..+++.+.+.+|
T Consensus       496 ~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  551 (588)
T 1b3u_A          496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence            99999999999999998888888999999999999999999999999999987655

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=4.5e-36  Score=325.75  Aligned_cols=568  Identities=18%  Similarity=0.146  Sum_probs=441.1

Q ss_pred             HHHhcCccHHHHHHHhhcHHHHHHh----hChHhhhhhhhhhhhhc-cCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842           15 IDELKNDDIQLRLNSIRRLSTIARA----LGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (587)
Q Consensus        15 ~~~l~s~~~~~R~~a~~~l~~~~~~----~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~   89 (587)
                      +..+.+.+..+|..|+..++.....    ++ +..+..+.+.+.+. .+.++.+|..++.+++.++..- ....++.+++
T Consensus        54 l~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~-~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~  131 (852)
T 4fdd_A           54 LTKLKSEDEPTRSLSGLILKNNVKAHFQNFP-NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLP  131 (852)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC-HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHH
T ss_pred             HhccCCCChHHHHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHH
Confidence            3333556677777777666643221    11 12223333433332 3566789999999999887643 2456788999


Q ss_pred             HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhH-------HhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH---
Q 007842           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---  159 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---  159 (587)
                      .+.+.+.++++.+|+.++.+++.+++..++..-       .+.++|.+.++..+++..+|..|+..++.+....+..   
T Consensus       132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~  211 (852)
T 4fdd_A          132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML  211 (852)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence            999999999999999999999999998765421       3457777777778888889999999998777665543   


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh--
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--  235 (587)
                      ....+++.+..+++|+++.||..++.+++.++...+.  ..+.+.+++.+....+|.++.||..+++.+..+++....  
T Consensus       212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~  291 (852)
T 4fdd_A          212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD  291 (852)
T ss_dssp             SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence            3457888888999999999999999999999987543  234456788888888999999999999999998764211  


Q ss_pred             --hhhhhchHHHHHHhc-----------cC-----------CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 007842          236 --QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD  291 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d  291 (587)
                        ......++|.+...+           .|           .+|.+|..++.+++.++...|+. ....++|.+...++|
T Consensus       292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~  370 (852)
T 4fdd_A          292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFH  370 (852)
T ss_dssp             HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcC
Confidence              123446777776665           34           57889999999999999988754 345688999999999


Q ss_pred             ChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHh
Q 007842          292 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSL  366 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~  366 (587)
                      ++|.+|.+++.+++.+++..+..  .+.+.++|.+...+.|+++.||.+++.+++.++...+.   ..+...++|.+...
T Consensus       371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~  450 (852)
T 4fdd_A          371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR  450 (852)
T ss_dssp             SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            99999999999999999876543  35578899999999999999999999999999886643   34567888999999


Q ss_pred             hcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHH
Q 007842          367 LKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGAL  440 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~  440 (587)
                      +.|.++.||..++.+++.+++..+..  .+.+.+++.+...+++.+......++++++.++...|...    +.+.++|.
T Consensus       451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~  530 (852)
T 4fdd_A          451 ILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP  530 (852)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHH
Confidence            99999999999999999999877654  3456777888888777777777778899999988776433    56777887


Q ss_pred             HH---HhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhcc-----------------CCchhHHHHHHHH
Q 007842          441 CM---QWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMIN-----------------NPHYLYRMTILRA  498 (587)
Q Consensus       441 l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----------------d~~~~~R~~a~~~  498 (587)
                      +.   ..+.|.+..+| .++.+++.++..+|..+  +.+.+++.+...+.                 .++..+|..++.+
T Consensus       531 l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~  609 (852)
T 4fdd_A          531 LIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL  609 (852)
T ss_dssp             HHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHH
Confidence            77   45677778886 78999999999888754  23445554433322                 2356799999999


Q ss_pred             HHHhhcccChHHH--H--hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHH
Q 007842          499 ISLLAPVMGSEIT--C--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFF  572 (587)
Q Consensus       499 l~~l~~~~~~~~~--~--~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~  572 (587)
                      ++.++..+|.+..  .  ..+++.+..+++|+++.||..+..+++.++..++..  .+...++|.+.+.+++.++.||..
T Consensus       610 l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~  689 (852)
T 4fdd_A          610 LSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN  689 (852)
T ss_dssp             HHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence            9999998886532  2  578999999999999999999999999999887764  456779999999888888999999


Q ss_pred             HHHHHHHHHHhhcc
Q 007842          573 ATQAIQSIDHVMMS  586 (587)
Q Consensus       573 a~~al~~l~~~~~~  586 (587)
                      |+.+++.++..+|.
T Consensus       690 a~~alg~i~~~~~~  703 (852)
T 4fdd_A          690 ATWAIGEISIQMGI  703 (852)
T ss_dssp             HHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhhH
Confidence            99999999887764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=1.1e-35  Score=322.61  Aligned_cols=569  Identities=14%  Similarity=0.159  Sum_probs=445.8

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCc-------ch
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGV-------EH   83 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~-------~~   83 (587)
                      ..+++.+.++++.+|..++..++.++...+ ...|.+++|.+.+.+ +.+..++..+..+++.+.+..+..       ..
T Consensus        93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~-~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~  171 (852)
T 4fdd_A           93 SECLNNIGDSSPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP  171 (852)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHHHTT-TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence            567777889999999999999999988764 456889999998855 446677877777777765433211       12


Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---  158 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---  158 (587)
                      ...++|.+.+++.++++.||..|+.++..+....+...  ....+++.+..+..+++..+|..++..++.++...++   
T Consensus       172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            56688888888889999999999999998776544321  1235667777777888888999999999887765543   


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhc----cchhhhHHHHHHHHhh-----------hC----------
Q 007842          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE----PAHLKTDIMSIFEDLT-----------QD----------  213 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~l~-----------~d----------  213 (587)
                      .+...+++.+..++.|.++.||..+++.+..+++...    -+.+.+.++|.+...+           .|          
T Consensus       252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~  331 (852)
T 4fdd_A          252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT  331 (852)
T ss_dssp             GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence            2567789999999999999999999999988875311    0234556777776655           33          


Q ss_pred             -CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcC
Q 007842          214 -DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLR  290 (587)
Q Consensus       214 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~  290 (587)
                       ..+.+|..+..+++.++...++ ...+.++|.+...++|++|.+|..++.+++.++...++.  .....++|.+..+++
T Consensus       332 ~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~  410 (852)
T 4fdd_A          332 ISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS  410 (852)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence             3457899999999999988874 466789999999999999999999999999998755431  123568999999999


Q ss_pred             CChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHH
Q 007842          291 DNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLS  365 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~  365 (587)
                      |+++.||.+++.+++.++...+.   ..+...+++.+.+.+.|+++.||..++.++..+++..+..  .+.+.+++.+..
T Consensus       411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~  490 (852)
T 4fdd_A          411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF  490 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence            99999999999999999987643   2455788899999999999999999999999998776653  356788888888


Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHH---HhcCCChHHHHHHHHHHHHHHHhhChhhh--HHH
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDK  436 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~---~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~  436 (587)
                      .+++........++.+++.++...|..    .+.+.++|.+.+   .+.|.++.+| .++++++.++..+|..+.  .+.
T Consensus       491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~  569 (852)
T 4fdd_A          491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP  569 (852)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence            888777777777888888888766643    356778888774   4567777776 789999999999886432  233


Q ss_pred             HHHHHHHhc-----------------CCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhccCCchhHHHHH
Q 007842          437 LGALCMQWL-----------------QDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTI  495 (587)
Q Consensus       437 l~~~l~~~l-----------------~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~~R~~a  495 (587)
                      +.+.+...+                 ..++..+|..++.+++.+++.+|.++.    ...+++.+...+.|+++.+|+.+
T Consensus       570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a  649 (852)
T 4fdd_A          570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS  649 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence            333333332                 123677999999999999999987642    25789999999999999999999


Q ss_pred             HHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCC--ccH
Q 007842          496 LRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPD--VDV  569 (587)
Q Consensus       496 ~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d--~~V  569 (587)
                      ..+++.++..++...  +.+.++|.+.+.+.+..+.+|.+++++++.++..++.+  .+...+++.|..++++++  ..+
T Consensus       650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~  729 (852)
T 4fdd_A          650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL  729 (852)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence            999999998877643  45779999999999889999999999999999888654  566788888888777764  479


Q ss_pred             HHHHHHHHHHHHHh
Q 007842          570 RFFATQAIQSIDHV  583 (587)
Q Consensus       570 r~~a~~al~~l~~~  583 (587)
                      +.+|+.++++++..
T Consensus       730 ~~~a~~~igrl~~~  743 (852)
T 4fdd_A          730 LENTAITIGRLGYV  743 (852)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=2.5e-35  Score=332.23  Aligned_cols=573  Identities=12%  Similarity=0.150  Sum_probs=452.2

Q ss_pred             ccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhC---hHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchH
Q 007842            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHA   84 (587)
Q Consensus         9 ~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~   84 (587)
                      +.+..+++.+.|.|++.|.+|...+......-.   .+...+.+++.+.+.+ +.++++|..++.+++.++..++. .+.
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            558899999999999999999988876432110   1122346677666644 66789999999999998876653 567


Q ss_pred             hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh--------hHHhhHHHHHHHHhc-CCCCcchhhHHhhhHhhcCC
Q 007842           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPS  155 (587)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~  155 (587)
                      ..+++.+...+.++++.+|..|..+++.++..+++.        ...+.++|.+..... +++..+|..++..++.+...
T Consensus        85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            788888888888999999999999999999988865        257789999988887 46778888899888877643


Q ss_pred             CC---hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhh-hCCchhHHHHHHHHHHHHhh
Q 007842          156 AP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       156 ~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~  231 (587)
                      .+   ..+...+++.+...+.++++.||..++.+++.++...+++. .+.+++.+...+ ++.++.+|..++++++.++.
T Consensus       165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~  243 (1230)
T 1u6g_C          165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  243 (1230)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            22   23678899999999999999999999999999998876543 344555544444 34345788899999999998


Q ss_pred             hcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-----------------
Q 007842          232 LLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR-----------------  290 (587)
Q Consensus       232 ~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~-----------------  290 (587)
                      ..++.  .+.+.++|.+.+.++|+++.+|..++.+++.++..++++.  ....++|.+.+.+.                 
T Consensus       244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~  323 (1230)
T 1u6g_C          244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM  323 (1230)
T ss_dssp             HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence            77652  2457799999999999999999999999999999877653  23456666665542                 


Q ss_pred             --------------------CChHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842          291 --------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (587)
Q Consensus       291 --------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                                          |..|.+|.+++.++..++...+.  ..+.+.++|.+...+.|.++.||.+++.++..+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence                                12367899999999999987664  46668889999988999999999999998887765


Q ss_pred             ccch---------------------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--hhHHhhHHHHHHHH
Q 007842          349 LLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL  405 (587)
Q Consensus       349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~  405 (587)
                      ..+.                     ..+.+.++|.+.+.++|+++.+|..++.+++.++...+.  ..+.+.++|.+.+.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~  483 (1230)
T 1u6g_C          404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS  483 (1230)
T ss_dssp             HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred             HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence            4321                     234566788888889999999999999999998876542  23457889999999


Q ss_pred             hcCCCh--HHHHHHHHHHHHHHHhhChhhh---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---------HH
Q 007842          406 AEDRHW--RVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EW  471 (587)
Q Consensus       406 ~~~~~~--~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~  471 (587)
                      ++|+++  .+|..++..+..+....+++.+   .+.++|.++..+.|+++.||..++.+++.+++.+|.         ..
T Consensus       484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~  563 (1230)
T 1u6g_C          484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP  563 (1230)
T ss_dssp             TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred             HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence            999876  8999999999999887777653   445788889999999999999999999999998876         13


Q ss_pred             HhhhhHHHHHhhc--cCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh--
Q 007842          472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--  545 (587)
Q Consensus       472 ~~~~l~~~l~~~l--~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~--  545 (587)
                      +.+.++|.+...+  .|++..+|.+++.+++.++...|...  +.+.+++.+...+.+  +..|..++++++.++...  
T Consensus       564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~  641 (1230)
T 1u6g_C          564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLK  641 (1230)
T ss_dssp             HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSC
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccc
Confidence            5678899988888  77889999999999999998877653  357778888777764  458999999999988643  


Q ss_pred             -chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          546 -DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       546 -~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                       ....+...++|.+...+.|.++.+|.++..+++.+....+
T Consensus       642 ~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          642 IDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence             2356778999999999999999999999999999988665

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=2e-34  Score=314.94  Aligned_cols=574  Identities=15%  Similarity=0.166  Sum_probs=453.2

Q ss_pred             HHHHHHHhcCc-cHHHHHHHhhcHHHHHHhhChH-----hhhhhhhhhhhhcc-CC--cHHHHHHHHHHhccccccCCCc
Q 007842           11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGV   81 (587)
Q Consensus        11 ~~~l~~~l~s~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~l~~~~~~~   81 (587)
                      +..|++.+.++ ++..|..++..+..++...+++     ...+.++|.+...+ +.  +.++|..+.++++.+..+++..
T Consensus       136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~  215 (861)
T 2bpt_A          136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN  215 (861)
T ss_dssp             HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            57788889998 9999999999999998877654     23456777776644 33  6789999999998876554321


Q ss_pred             ----chHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842           82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (587)
Q Consensus        82 ----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (587)
                          .....+++.+...+.++++.+|..++.++..++...+..   .+.+.+++++.....+.+..+|..++..+..+..
T Consensus       216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~  295 (861)
T 2bpt_A          216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                123457788888888999999999999999998876532   2222566777677777778888888887766554


Q ss_pred             CC-----------------C---hHHHHHHHHHHHHhcCC-------CChHHHHHHHHhHHHHHHhhccchhhhHHHHHH
Q 007842          155 SA-----------------P---DILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (587)
Q Consensus       155 ~~-----------------~---~~~~~~l~~~l~~l~~d-------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  207 (587)
                      ..                 +   ......++|.+...+.+       +++.+|..+..+++.++..++ +...+.+++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l  374 (861)
T 2bpt_A          296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFV  374 (861)
T ss_dssp             HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred             HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHH
Confidence            31                 1   12346778887776653       457899999999999999886 55667889999


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 007842          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD  280 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~  280 (587)
                      ...+++.++.+|.+++.+++.+++..+++   ...+.++|.+...+.|+++.||..++.+++.++..+++.    .....
T Consensus       375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  454 (861)
T 2bpt_A          375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG  454 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred             HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            99999999999999999999999876632   235568888999999999999999999999999987642    23457


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH------HHHHHhHhHHHHHhcc--CCcHHHHHHHHHHHHccccccch
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK  352 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      ++|.+...++|+ +.||..++.++..+++.+++      ..+.+.+++.+.+.+.  |.++.+|..++.+++.++...+.
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            889999999887 99999999999999987651      1455778888888887  45589999999999999887765


Q ss_pred             h--HHHHhHHHHHHHhhcC---------------CChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCCh-H
Q 007842          353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R  412 (587)
Q Consensus       353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~-~  412 (587)
                      +  .+...++|.+...+.+               ....+|..++.++..++..+|..  .+.+.++|.+...+++.++ .
T Consensus       534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  613 (861)
T 2bpt_A          534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF  613 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence            3  2455677777666542               24568889999999999888764  3456788888888888877 8


Q ss_pred             HHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc
Q 007842          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH  488 (587)
Q Consensus       413 vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~  488 (587)
                      +|..++.+++.++...|.++  +.+.++|.+...++++++.+|..++.+++.++...|..+  +...++|.+.+.+.+++
T Consensus       614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  693 (861)
T 2bpt_A          614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence            99999999999998887543  457789999999999999999999999999999887653  45678888888888765


Q ss_pred             --hhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhhhhhch--H---
Q 007842          489 --YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ--S---  548 (587)
Q Consensus       489 --~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~--~---  548 (587)
                        ..+|..++.+++.++..+|..+  +.+.++|.+.+.++...           ..+|..+++++..++..++.  .   
T Consensus       694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~  773 (861)
T 2bpt_A          694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF  773 (861)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred             ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              8899999999999999887654  46788999888876421           57999999999999988762  2   


Q ss_pred             HHHhhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHhh-cc
Q 007842          549 MVEKTIRPCLVELTEDP----DVDVRFFATQAIQSIDHVM-MS  586 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~----d~~Vr~~a~~al~~l~~~~-~~  586 (587)
                      .+...+++.+...+.|.    ++.||..|..+++.+++.+ |+
T Consensus       774 ~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~  816 (861)
T 2bpt_A          774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG  816 (861)
T ss_dssp             GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence            35566777777777774    8899999999999999988 54

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=2.5e-34  Score=314.13  Aligned_cols=572  Identities=12%  Similarity=0.105  Sum_probs=450.0

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC-C-cHHHHHHHHHHhccccccCCC-----cchH
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-D-DDEVLLAMAEELGVFIPYVGG-----VEHA   84 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~-~~~v~~~~~~~l~~l~~~~~~-----~~~~   84 (587)
                      +.+++.+.++++..|..+...++.++...+|...|++++|.+.+... + ++.+|..+..+++.+....+.     ..+.
T Consensus        98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  177 (861)
T 2bpt_A           98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            57888899999999999999999999888776678899999988654 3 667888888888777654432     2366


Q ss_pred             hhhHHHHhhhhcch--hhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842           85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (587)
Q Consensus        85 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  158 (587)
                      ..+++.+...+.++  ++.||..|+.++..+...+..    ......+++.+.....++++..|..++..+..+....++
T Consensus       178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~  257 (861)
T 2bpt_A          178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888887  789999999999997654432    122356788888888888888999998888776654332


Q ss_pred             ---HHHH-HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-------------------chhhhHHHHHHHHhhhC--
Q 007842          159 ---ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD--  213 (587)
Q Consensus       159 ---~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~l~~d--  213 (587)
                         .+.. .+++.+...+.|.++.+|..+++.+..++.....                   ..+...++|.+...+.+  
T Consensus       258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence               2444 7888888899999999999999999998876411                   11235567776665542  


Q ss_pred             -----CchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 007842          214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY  285 (587)
Q Consensus       214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l  285 (587)
                           +++.+|..+...+..++..++.. ..+.+++.+.+.+++++|.+|..++.+++.++...+++.   ....++|.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l  416 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 34689999999999999888743 567889999999999999999999999999885443111   123578888


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCH----HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch------hHH
Q 007842          286 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DAT  355 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~  355 (587)
                      ...++|+++.||..++.+++.++..++.    ..+.+.++|.+...+.|+ +.||..++.++..++..++.      ..+
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            9999999999999999999999987754    345678899999888886 99999999999988876541      245


Q ss_pred             HHhHHHHHHHhhcC--CChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcC---------------CChHHHHH
Q 007842          356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED---------------RHWRVRLA  416 (587)
Q Consensus       356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~---------------~~~~vR~~  416 (587)
                      .+.+++.+...+.+  .++.+|..++.+++.++...+.+  .+...++|.+.+.+.+               ....+|..
T Consensus       496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            67788888888874  44789999999999999887754  2334566666655432               24568889


Q ss_pred             HHHHHHHHHHhhChh--hhHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhH
Q 007842          417 IIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLY  491 (587)
Q Consensus       417 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~  491 (587)
                      ++.+++.++..+|..  .+.+.+++.+...+++.+. .+|..++.+++.++...|.++  +.+.++|.+...++++++.+
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v  655 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV  655 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence            999999999988764  3457788888888888877 899999999999999888764  45779999999888899999


Q ss_pred             HHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCC
Q 007842          492 RMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP  565 (587)
Q Consensus       492 R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~  565 (587)
                      |..++.+++.++..+|...  +...++|.+.+.+++++  +.+|..++.+++.++...+..  .+.+.++|.+.+.....
T Consensus       656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~  735 (861)
T 2bpt_A          656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK  735 (861)
T ss_dssp             HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence            9999999999998887643  46788898999888765  899999999999999988765  45678888888865532


Q ss_pred             ------C-----ccHHHHHHHHHHHHHHhhc
Q 007842          566 ------D-----VDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       566 ------d-----~~Vr~~a~~al~~l~~~~~  585 (587)
                            |     ..+|..+..++..+.+.+|
T Consensus       736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~  766 (861)
T 2bpt_A          736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLH  766 (861)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  1     4689999999999887765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=1.8e-34  Score=325.27  Aligned_cols=569  Identities=14%  Similarity=0.191  Sum_probs=446.0

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCc--------
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGV--------   81 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~--------   81 (587)
                      +..+++.+.++++.+|..|+..++.++...++ .....+++.+...+ ++++.+|..++.+++.++..++..        
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            56788999999999999999999999887776 45567888887754 667789999999999888766643        


Q ss_pred             chHhhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842           82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (587)
Q Consensus        82 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  158 (587)
                      .+.+.++|.+...+. ++++.+|..|+.++..++...+..  .....+++.+.....++...+|..++..++.+....++
T Consensus       129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence            267889999888887 588999999999999998765431  12345666666677777778999999999998887765


Q ss_pred             HHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842          159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+++.+...+. +.++.+|..++++++.++...+..  .+.+.++|.+...++|+++.+|..+...++.++..++.
T Consensus       209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            544455555554433 334578999999999999887642  34577899999999999999999999999999988765


Q ss_pred             h--hhhhchHHHHHHhcc-------------------------------------CCcHHHHHHHHHHHHHHHHHhCC--
Q 007842          236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP--  274 (587)
Q Consensus       236 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~~~~~~~~--  274 (587)
                      +  .+.+.++|.+.+.+.                                     |..|.+|..++.+++.++...++  
T Consensus       289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~  368 (1230)
T 1u6g_C          289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  368 (1230)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence            3  245666666655432                                     23588999999999999986553  


Q ss_pred             CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---------------------HHHHHhHhHHHHHhccCCcH
Q 007842          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~i~~~l~~~~~d~~~  333 (587)
                      ......++|.+...++|.++.||..++.++..+....+.                     ..+.+.++|.+.+.+.|++|
T Consensus       369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~  448 (1230)
T 1u6g_C          369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  448 (1230)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence            223456788898889999999999999999988876542                     23456777888888999999


Q ss_pred             HHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCCh--HHHHHHHHhhhhhhhhhchhh---HHhhHHHHHHHHh
Q 007842          334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA  406 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~  406 (587)
                      .+|.+++.+++.+....+.  ..+.+.++|.+...++|.++  .+|..++..+..+....+.+.   +.+.++|.+...+
T Consensus       449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l  528 (1230)
T 1u6g_C          449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  528 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence            9999999999988776542  23577899999999999865  899999999999988777653   4577899999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhCh---------hhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhChHH--Hh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEW--AM  473 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~  473 (587)
                      +|++|++|..++..++.+++.+|.         ..+.+.++|.++..+  .|.+..||..|+.+++.++...|..+  ..
T Consensus       529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~  608 (1230)
T 1u6g_C          529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL  608 (1230)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence            999999999999999999988876         235677899999888  78899999999999999999888764  23


Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhccc---ChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  550 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~  550 (587)
                      ..+++.+.+.+.+  ...|..++.+++.++...   +...+...++|.+...+.+.+..+|.+++.+++.++...+....
T Consensus       609 ~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~  686 (1230)
T 1u6g_C          609 PNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT  686 (1230)
T ss_dssp             HHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC
Confidence            5666666666654  348999999999988643   22456789999999999999999999999999999988765433


Q ss_pred             HhhHHHHHHH---hcCCCCccHHHHHHHHHHHHHH
Q 007842          551 EKTIRPCLVE---LTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       551 ~~~i~~~l~~---l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .+.+.|.+..   +++|.|.+++..+..+|..+.+
T Consensus       687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~  721 (1230)
T 1u6g_C          687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK  721 (1230)
T ss_dssp             HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence            3456666654   4678899999888888888764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=5.5e-33  Score=304.17  Aligned_cols=571  Identities=16%  Similarity=0.165  Sum_probs=413.8

Q ss_pred             HHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CC--cHHHHHHHHHHhccccccCCC---cchHhh
Q 007842           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGG---VEHAHV   86 (587)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~l~~~~~~---~~~~~~   86 (587)
                      .+++.+.++++.. ..++..++.++...++...+++++|.+.+.+ +.  ++.+|..+..+++.+....++   ..+...
T Consensus        94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  172 (876)
T 1qgr_A           94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence            4777888887777 8888888888888777677888999888754 44  567888888888877654432   235566


Q ss_pred             hHHHHhhhhcch--hhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh--
Q 007842           87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--  158 (587)
Q Consensus        87 l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--  158 (587)
                      +++.+.+.+.++  ++.+|..|+.++..++..++..    .....+++.+.....+++..+|..++..+..+....++  
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            777777777766  5789999999999877654322    12234677777777777777888888877766554332  


Q ss_pred             -HHHH-HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhc------------------c--c---hhhhHHHHHHHHhhh-
Q 007842          159 -ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P--A---HLKTDIMSIFEDLTQ-  212 (587)
Q Consensus       159 -~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~------------------~--~---~~~~~l~~~l~~l~~-  212 (587)
                       .+.. .+++.+.....+.++.||..+++.+..++....                  .  .   ...+.++|.+...+. 
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  332 (876)
T 1qgr_A          253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence             2344 778888888888888999998888888776531                  0  0   012445665555543 


Q ss_pred             ------CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC---ccccchHH
Q 007842          213 ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP  283 (587)
Q Consensus       213 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~  283 (587)
                            |+++.+|.++..++..++..++.. ..+.++|.+...++|++|.+|..++.+++.++...+++   .....++|
T Consensus       333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~  411 (876)
T 1qgr_A          333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP  411 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                  345788999999999888877743 56678888888888899999999999998887654421   12235788


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------
Q 007842          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------  351 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------  351 (587)
                      .+...++|+++.||..++.+++.++..++.    ..+.+.+++.+...+.|+ +.||..++.++..++...+        
T Consensus       412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~  490 (876)
T 1qgr_A          412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD  490 (876)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence            888888998899999999999998887654    245577888888888775 8889888888888776543        


Q ss_pred             --------hhHHHHhHHHHHHHhhcCC---ChHHHHHH------------------------------------------
Q 007842          352 --------KDATIEQLLPIFLSLLKDE---FPDVRLNI------------------------------------------  378 (587)
Q Consensus       352 --------~~~~~~~l~~~l~~~l~d~---~~~vr~~a------------------------------------------  378 (587)
                              -..+.+.++|.+...+.+.   +..+|..+                                          
T Consensus       491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  570 (876)
T 1qgr_A          491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS  570 (876)
T ss_dssp             CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred             cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                    1234566777777766543   23444444                                          


Q ss_pred             --------------HHhhhhhhhhhc-hh--hHHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh--hHHHH
Q 007842          379 --------------ISKLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKL  437 (587)
Q Consensus       379 --------------~~~l~~l~~~~~-~~--~~~~~~l~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~--~~~~l  437 (587)
                                    +.++..++..+| ..  .+.+.++|.+...+++.+  +.+|..++.+++.++...|..+  +.+.+
T Consensus       571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  650 (876)
T 1qgr_A          571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF  650 (876)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                          444444444444 21  223456677777777654  6899999999999998776533  45678


Q ss_pred             HHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChHH--
Q 007842          438 GALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--  510 (587)
Q Consensus       438 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~~--  510 (587)
                      +|.+...+.+. ++.||..|+.+++.++...|..+  +.+.+++.+.+.+.+  .+..+|..++.+++.++..+|.++  
T Consensus       651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~  730 (876)
T 1qgr_A          651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK  730 (876)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence            89999999887 89999999999999999887643  347788888888776  467899999999999998777653  


Q ss_pred             HHhhHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhhhhhch------------HHHHhhHHHHHHHhcCCC--
Q 007842          511 TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ------------SMVEKTIRPCLVELTEDP--  565 (587)
Q Consensus       511 ~~~~il~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~------------~~~~~~i~~~l~~l~~d~--  565 (587)
                      +.+.++|.+.+.++++.           ..+|..+++++..++..++.            ..+...+++.+..+..|+  
T Consensus       731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  810 (876)
T 1qgr_A          731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH  810 (876)
T ss_dssp             GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46778888888776542           38999999999988876543            134566777777776777  


Q ss_pred             CccHHHHHHHHHHHHHHhhcc
Q 007842          566 DVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       566 d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +..||..|..+++.+.+..|.
T Consensus       811 ~~~vr~~a~~~l~~l~~~~~~  831 (876)
T 1qgr_A          811 TDGVVACAAGLIGDLCTAFGK  831 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHhCc
Confidence            679999999999999988764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=8e-32  Score=294.92  Aligned_cols=574  Identities=14%  Similarity=0.156  Sum_probs=425.0

Q ss_pred             HHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHh---hhhhhhhhhhhccC-C--cHHHHHHHHHHhccccccCCCc-
Q 007842           11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENND-D--DDEVLLAMAEELGVFIPYVGGV-   81 (587)
Q Consensus        11 ~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~~-~--~~~v~~~~~~~l~~l~~~~~~~-   81 (587)
                      +..|++.+.++  ++..|..+++.+..++...+++.   ..+.++|.+.+.+. +  +.++|..+.++++.++.+++.. 
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888889998  99999999999999987766532   23456676666443 3  4689999999998877655421 


Q ss_pred             ---chHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh---hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC
Q 007842           82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (587)
Q Consensus        82 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~  155 (587)
                         .....+++.+...+.++++.+|..++.++..++...+..   .+...+++++.....+++..+|..++..+..+...
T Consensus       210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence               111346777777778889999999999999998765532   22226777777777777777788877666554321


Q ss_pred             C---------------------C---hHHHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhccchhhhHHH
Q 007842          156 A---------------------P---DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM  204 (587)
Q Consensus       156 ~---------------------~---~~~~~~l~~~l~~l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  204 (587)
                      .                     .   ......+++.+...+.       ++++.+|.++..+++.++...+ +...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l  368 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHH
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHHH
Confidence            0                     0   1133567777776654       4568899999999999999886 45667888


Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCC----cc
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT  277 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~  277 (587)
                      +.+...++|.++.+|.+++.+++.++...+++   ...+.++|.+...++|+++.||..++.+++.++..+++.    ..
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            99988999999999999999999999877632   245668899999999999999999999999999987642    23


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----------------HHHHHHhHhHHHHHhccCC---c------
Q 007842          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---S------  332 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~i~~~l~~~~~d~---~------  332 (587)
                      ...+++.+...+.|. +.||..++.++..++...+                -..+.+.++|.+...+.+.   +      
T Consensus       449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~  527 (876)
T 1qgr_A          449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence            446788888888886 8899999999998887653                1134466677666655442   1      


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHccccccc-hh--HHHHhH
Q 007842          333 --------------------------------------------------QHVRSALASVIMGMAPLLG-KD--ATIEQL  359 (587)
Q Consensus       333 --------------------------------------------------~~vr~~a~~~l~~l~~~~~-~~--~~~~~l  359 (587)
                                                                        +.+|..++.++..++..+| ..  .+.+.+
T Consensus       528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l  607 (876)
T 1qgr_A          528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence                                                              2334455555555555555 22  235567


Q ss_pred             HHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--
Q 007842          360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--  432 (587)
Q Consensus       360 ~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~--  432 (587)
                      +|.+...+++..  ..+|..++.+++.++...|..  .+.+.++|.+...+.+. ++.+|..++.+++.++...|...  
T Consensus       608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  687 (876)
T 1qgr_A          608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP  687 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            788888888764  479999999999998877653  34467788888888876 89999999999999998887432  


Q ss_pred             hHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCc-----------hhHHHHHHH
Q 007842          433 FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH-----------YLYRMTILR  497 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~-----------~~~R~~a~~  497 (587)
                      +.+.+++.+...+.+  .+..+|..++.+++.++...|.++  +.+.++|.+...+.++.           ..+|..++.
T Consensus       688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~  767 (876)
T 1qgr_A          688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE  767 (876)
T ss_dssp             HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence            346778888888876  467899999999999999888774  34667777777665432           279999999


Q ss_pred             HHHHhhcccCh------------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhch-H--HH-HhhHHHHHH
Q 007842          498 AISLLAPVMGS------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--MV-EKTIRPCLV  559 (587)
Q Consensus       498 ~l~~l~~~~~~------------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~-~--~~-~~~i~~~l~  559 (587)
                      ++..+...+|.            ..+.+.+++.+.....|+  +..+|..++.+|+.++..++. .  .+ .+.+++.+.
T Consensus       768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll  847 (876)
T 1qgr_A          768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL  847 (876)
T ss_dssp             HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence            99888765442            113456667776666777  789999999999999998877 3  23 345666666


Q ss_pred             H-hcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          560 E-LTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       560 ~-l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      . .+.|+++.||..|+.|++.++++-.+
T Consensus       848 ~~~l~~~~~~~r~~a~~a~~~~~~~~~~  875 (876)
T 1qgr_A          848 TEGRRSKTNKAKTLARWATKELRKLKNQ  875 (876)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhcCCHhHHHHHHHHHHHHHHhhcC
Confidence            6 78899999999999999999987544

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.95  E-value=1.1e-24  Score=224.84  Aligned_cols=504  Identities=14%  Similarity=0.155  Sum_probs=358.7

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcchHhhhH
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~   88 (587)
                      .+.++.+.|++++...|..++..+-.+ ...|.+.  ..+.+.+.+.. +++.++++.+.-.+..+++  ..++....+.
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~e~~~l~~   88 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAK--SQPDMAIMAV   88 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHH--HSHHHHHTTH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cCchHHHHHH
Confidence            578999999999999999998888754 5567543  23444444433 4556777776666666544  1234445556


Q ss_pred             HHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHH
Q 007842           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  168 (587)
                      +.+.+-+.++|+.+|..|+.+++.+.   .                                       ++....+.+.+
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~---~---------------------------------------~~~~~~l~~~l  126 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIR---V---------------------------------------DKITEYLCEPL  126 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCC---S---------------------------------------GGGHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC---h---------------------------------------HHHHHHHHHHH
Confidence            67777778888888888877776653   1                                       22344556677


Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhccchhh-hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHH
Q 007842          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP  244 (587)
Q Consensus       169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~  244 (587)
                      ..++.|+++.||+.|+.+++.+.... ++... ..+++.+..+++|+++.|+..|+.++..++..-+..   ......++
T Consensus       127 ~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~  205 (591)
T 2vgl_B          127 RKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN  205 (591)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence            78888999999999999999998854 23222 358889999999999999999999999988754321   01122344


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh--CHH---HHHH
Q 007842          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPE---LAIQ  318 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~  318 (587)
                      .+.+.+.+.++..+...++.++.++   +.+ .....+++.+..++++.++.|+..|+.++..+...+  +++   ....
T Consensus       206 ~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~  282 (591)
T 2vgl_B          206 KLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK  282 (591)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence            4445555667777777777665543   111 122468888888999999999999999999887543  111   2234


Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      .+.+.+..+. ++++.+|..++.++..+....+. .+.+.+- .+.....| +..||..+++.+..++..-.    .+.+
T Consensus       283 ~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~~n----v~~i  354 (591)
T 2vgl_B          283 KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIK-VFFVKYND-PIYVKLEKLDIMIRLASQAN----IAQV  354 (591)
T ss_dssp             HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTT-TTSCCTTS-CHHHHHHHHHHHHHTCCSST----HHHH
T ss_pred             HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHH-hheeccCC-hHHHHHHHHHHHHHHCChhh----HHHH
Confidence            5566666655 47889999999999988754332 1111111 12222344 48999999999888764322    3567


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      ++.+.+++.+.++.+|..++..++.++..++.  ..+.+++.+..++.+....|+..++.++..+.+.....  .+.+++
T Consensus       355 v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~  430 (591)
T 2vgl_B          355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIA  430 (591)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHH
Confidence            88888899999999999999999999877542  24668889999999999999999999999998765542  356778


Q ss_pred             HHHhhcc-CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHH
Q 007842          479 QVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC  557 (587)
Q Consensus       479 ~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~  557 (587)
                      .+.+.+. ..++.+|.++++++|..+......   ..++..+.+.+.+.++.||..++.++.++....+... ...+...
T Consensus       431 ~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~l  506 (591)
T 2vgl_B          431 TLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQV  506 (591)
T ss_dssp             HHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHH
Confidence            8877776 456889999999999998876542   5677777877888899999999999999998765432 2345555


Q ss_pred             HHHhcCC-CCccHHHHHHHHHHHH
Q 007842          558 LVELTED-PDVDVRFFATQAIQSI  580 (587)
Q Consensus       558 l~~l~~d-~d~~Vr~~a~~al~~l  580 (587)
                      +..+..| .|.+||..|...+.-+
T Consensus       507 l~~~~~d~~d~evrdRA~~y~~ll  530 (591)
T 2vgl_B          507 LSLATQDSDNPDLRDRGYIYWRLL  530 (591)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred             HHHhhhcCCChHHHHHHHHHHHHH
Confidence            5555566 6789999999877655

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.94  E-value=1.5e-23  Score=211.93  Aligned_cols=382  Identities=14%  Similarity=0.135  Sum_probs=290.9

Q ss_pred             hcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC--CchhHHHHHHHHHHHHhhh---------------c
Q 007842          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKL---------------L  233 (587)
Q Consensus       171 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~---------------~  233 (587)
                      .+.++++.+|+.|-+.|..+...-     .+.+...+...+.+  .++.+|..|+..|..+...               +
T Consensus         9 ~~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l   83 (462)
T 1ibr_B            9 KTVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI   83 (462)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence            355778899999999988865421     12233333333333  3678999999988887532               2


Q ss_pred             ChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhh
Q 007842          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRIL  311 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~  311 (587)
                      +++ ....+...+...+.++++.+ ..++.+++.++....+......++|.+...+.++  ++.+|..++.+++.+++..
T Consensus        84 ~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~  161 (462)
T 1ibr_B           84 DAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  161 (462)
T ss_dssp             CHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence            222 34456666777778888888 8899999999987654334678999999999888  8999999999999998865


Q ss_pred             CH---HHHHHhHhHHHHHhccCC--cHHHHHHHHHHHHccccccchh----HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842          312 NP---ELAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (587)
Q Consensus       312 ~~---~~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (587)
                      ..   ..+.+.+++.+...+.|+  ++.||..++++++.+...+...    ...+.+++.+...+.+.++++|..+++++
T Consensus       162 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l  241 (462)
T 1ibr_B          162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (462)
T ss_dssp             CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            32   234467888888888888  7999999999998876554321    12345678888888899999999999999


Q ss_pred             hhhhhhhchh--hHHh-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-------------------C-hhh---hHHH
Q 007842          383 DQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDK  436 (587)
Q Consensus       383 ~~l~~~~~~~--~~~~-~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-------------------~-~~~---~~~~  436 (587)
                      ..+....+..  .+.. .+++.+...+.+.+..+|..+++.+..++...                   . ...   +.+.
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (462)
T 1ibr_B          242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY  321 (462)
T ss_dssp             HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence            9998766532  2335 77888888888999999999999998887652                   0 111   2356


Q ss_pred             HHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842          437 LGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (587)
Q Consensus       437 l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~  509 (587)
                      ++|.++..+.       |.+|.+|.+|..+++.++..+|. .....++|.+...+++++|.+|.+++.+++.++...+.+
T Consensus       322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~  400 (462)
T 1ibr_B          322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS  400 (462)
T ss_dssp             HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred             ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence            7888887774       34689999999999999999884 456788899999999999999999999999999865532


Q ss_pred             ---HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHH
Q 007842          510 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE  560 (587)
Q Consensus       510 ---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~  560 (587)
                         ...+.++|.+...++|+++.||.+++.+|+.++..+++.    .+...++|.|.+
T Consensus       401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~  458 (462)
T 1ibr_B          401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE  458 (462)
T ss_dssp             TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence               235789999999999999999999999999999887763    344555555544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=2.1e-23  Score=214.57  Aligned_cols=475  Identities=15%  Similarity=0.079  Sum_probs=307.5

Q ss_pred             hccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhH
Q 007842           71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH  150 (587)
Q Consensus        71 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~  150 (587)
                      +++|.++.++.++....+|.|..++.++++.+|..|..+|..++..-+...   .+.                       
T Consensus         2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~---~~~-----------------------   55 (529)
T 1jdh_A            2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIM-----------------------   55 (529)
T ss_dssp             CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---HHH-----------------------
T ss_pred             hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH---HHH-----------------------
Confidence            467788888877777888999899999999999999999999985432110   000                       


Q ss_pred             hhcCCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHH
Q 007842          151 IAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  227 (587)
Q Consensus       151 ~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~  227 (587)
                               .....++.+..++. ++++.+|..++.+|..++..-..  .......+|.+..+++++++.++..++.+|.
T Consensus        56 ---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~  126 (529)
T 1jdh_A           56 ---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH  126 (529)
T ss_dssp             ---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                     00123333333332 34677777777777776543111  1122346677777788888888888888888


Q ss_pred             HHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-HHHHHHH
Q 007842          228 ALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-AEVRIAA  300 (587)
Q Consensus       228 ~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a  300 (587)
                      .++..-+.   .......+|.+.+++.++++.+|..++.++..++..-.   ........++.+..++++.+ ...+..+
T Consensus       127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a  206 (529)
T 1jdh_A          127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  206 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence            88765332   11235578888888888888898888888887764100   00112346777777776544 4566667


Q ss_pred             HHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHH
Q 007842          301 AGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       301 ~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      ..++..++..-...  ......++.+..++.+.+..++..++.++..++...+.......++|.+.+++.+.++++|..+
T Consensus       207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  286 (529)
T 1jdh_A          207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence            77777776532221  2224578888888888899999999999988876543332334678889999999999999999


Q ss_pred             HHhhhhhhhhhc--hh-hHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHHHhcCC
Q 007842          379 ISKLDQVNQVIG--ID-LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQD  447 (587)
Q Consensus       379 ~~~l~~l~~~~~--~~-~~~~~~l~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d  447 (587)
                      +.+|..++..-.  .. ......+|.+.+++.+  .++.+|..++.+++.++...+.      .......+|.+..++.+
T Consensus       287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~  366 (529)
T 1jdh_A          287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP  366 (529)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc
Confidence            999998876321  11 1223457777777754  4478999999988888643221      11122347788888888


Q ss_pred             Cc-hHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHH----------------------h
Q 007842          448 KV-YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISL----------------------L  502 (587)
Q Consensus       448 ~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~----------------------l  502 (587)
                      +. +.+|..++.+++++.....  ..+....++|.+.+++.++++.+|..+++++++                      +
T Consensus       367 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L  446 (529)
T 1jdh_A          367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL  446 (529)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence            76 6899999999988874211  112335678888888887777777765554443                      3


Q ss_pred             hcccCh--HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh--chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842          503 APVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       503 ~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      +.....  .......+|.+..++.|+++++|..++.++.++...-  .........++.|..+..|++++||..|..+|.
T Consensus       447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~  526 (529)
T 1jdh_A          447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF  526 (529)
T ss_dssp             TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence            321110  0123456789999999999999999999999987431  111223456789999999999999999999998


Q ss_pred             HH
Q 007842          579 SI  580 (587)
Q Consensus       579 ~l  580 (587)
                      .+
T Consensus       527 ~l  528 (529)
T 1jdh_A          527 RM  528 (529)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=1.2e-20  Score=195.02  Aligned_cols=570  Identities=12%  Similarity=0.072  Sum_probs=392.5

Q ss_pred             HHHHHHhcC-ccHHHHHHHhhcHHHHHHhhChHhhhh---hh-hhhhhhcc-CCcHHHHHHHHHHhccc----cc----c
Q 007842           12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRK---EL-IPFLSENN-DDDDEVLLAMAEELGVF----IP----Y   77 (587)
Q Consensus        12 ~~l~~~l~s-~~~~~R~~a~~~l~~~~~~~~~~~~~~---~l-~p~l~~~~-~~~~~v~~~~~~~l~~l----~~----~   77 (587)
                      ..|.+.+++ .|.+....|++.+..++.. ..+++..   ++ +|.+.+.+ .+++++-.+....+..+    ..    .
T Consensus        52 ~~~~~l~~~~~~~~~~~~~~r~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (810)
T 3now_A           52 AKVASLTKVEKDQDIYVNMVHLVAALCEN-SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKP  130 (810)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHhc-cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence            445555666 7899999999999998753 2233332   11 45555533 24444434443333322    21    1


Q ss_pred             CCCcc---------hHhhhHHHHhhhhcchh--hHHHHHHHHHHHHHHhhcChh---hH-HhhHHHHHHHHhcC-C----
Q 007842           78 VGGVE---------HAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRES---DL-VDWYIPLVKRLAAG-E----  137 (587)
Q Consensus        78 ~~~~~---------~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~---~~-~~~l~~~l~~l~~~-~----  137 (587)
                      ..+++         ....++..|..++.+..  ...|+.++..+.+...+-..+   .+ ...-+.-+...+.. +    
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~  210 (810)
T 3now_A          131 DSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKY  210 (810)
T ss_dssp             TCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCC
T ss_pred             ccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccc
Confidence            11111         22344555555555553  579999999888876443221   11 11122222233322 1    


Q ss_pred             ------CCcchhhHHhhhHhhcCCCC-----hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc---hh-hhH
Q 007842          138 ------WFTARVSACGLFHIAYPSAP-----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HL-KTD  202 (587)
Q Consensus       138 ------~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~-~~~  202 (587)
                            ....|..+.-++..+++...     +.+.+.+-.++...+..++..-+..++.++..++....+.   .+ .+.
T Consensus       211 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G  290 (810)
T 3now_A          211 ESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREG  290 (810)
T ss_dssp             SSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTT
T ss_pred             cccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence                  24678888888889988776     2355556667777777777777777788888877653221   12 345


Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----Cc-
Q 007842          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP-  276 (587)
Q Consensus       203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~-  276 (587)
                      .+|.+..++..+++.++..|+.+++.++..-.. ....+.-.|.+..++.+++..+|..|+.+|.+++...+.    .. 
T Consensus       291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~  370 (810)
T 3now_A          291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF  370 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred             hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence            788889999999999999999999987765221 122223348999999888899999999999888753321    11 


Q ss_pred             ---cccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhhCHH-HHH--HhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842          277 ---TRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (587)
Q Consensus       277 ---~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                         ....+++.+.+++.++  ++++|..|+.+|..++..-... .+.  ..++|.+..++++++..++..++.++++++.
T Consensus       371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~  450 (810)
T 3now_A          371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN  450 (810)
T ss_dssp             TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence               1235788899998887  8899999999999997643221 121  3578889999888889999999999999986


Q ss_pred             ccc-----------------------------------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh-
Q 007842          349 LLG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-  392 (587)
Q Consensus       349 ~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  392 (587)
                      ...                                   ......-.+|.+..++++.++.+|..++++|..++..-... 
T Consensus       451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~  530 (810)
T 3now_A          451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG  530 (810)
T ss_dssp             CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            321                                   00112246899999999999999999999999998542211 


Q ss_pred             -hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-----HHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Q 007842          393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAE  465 (587)
Q Consensus       393 -~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~  465 (587)
                       ......+|.+..++.+.+...|..++.++..++....++..     ....+|.+..++..+ +...+..|+.+|.+++.
T Consensus       531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~  610 (810)
T 3now_A          531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS  610 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence             22346789999999999999999999999998865443321     123678888888754 44456688899998875


Q ss_pred             Hh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh-HHHH--hhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842          466 EF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       466 ~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~il~~l~~~l~d~~~~vR~~~~~~l~  539 (587)
                      .-   .........+|.+..++.+++..+|..|++++++++..-.. ..+.  ...++.++.++..++..+|..++.+|+
T Consensus       611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa  690 (810)
T 3now_A          611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA  690 (810)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            31   11123345789999999999999999999999999863211 1122  357899999999999999999999999


Q ss_pred             Hhhhhhch--H-HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          540 SLIPIVDQ--S-MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       540 ~l~~~~~~--~-~~~-~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      .+......  . .+. ...+|.|..++.+.+.++|..|..++..+..
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            99874222  2 233 4688999999999999999999999998864

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.92  E-value=4.2e-23  Score=208.61  Aligned_cols=336  Identities=15%  Similarity=0.173  Sum_probs=219.2

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCC--chhHHHHHHHHHHHHhh
Q 007842          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGK  231 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~  231 (587)
                      ..++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+...++++  ++.+|..++.+++.+++
T Consensus        81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~  159 (462)
T 1ibr_B           81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (462)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            34666777888888888888888889 9999999999988655445688999998888888  88999999999999988


Q ss_pred             hcCh---hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHHHHHH
Q 007842          232 LLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAG  302 (587)
Q Consensus       232 ~~~~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (587)
                      ...+   ....+.+++.+...++|+  ++.||..++++++.+...++.    ......+++.+...+.+.++.+|..+++
T Consensus       160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~  239 (462)
T 1ibr_B          160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ  239 (462)
T ss_dssp             HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            6633   224456888888888888  799999999999886543221    1112335777777888889999999999


Q ss_pred             hHHHHHhhhCHH--HHHH-hHhHHHHHhccCCcHHHHHHHHHHHHccccccc--------------------h---hHHH
Q 007842          303 KVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------------------K---DATI  356 (587)
Q Consensus       303 ~l~~l~~~~~~~--~~~~-~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------------------~---~~~~  356 (587)
                      ++..++...+..  .+.+ .+++.+...+.|.++.+|..+++.+..++....                    .   ..+.
T Consensus       240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (462)
T 1ibr_B          240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL  319 (462)
T ss_dssp             HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence            999998876542  3345 778888888889999999999988877764310                    0   0012


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHH
Q 007842          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  436 (587)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~  436 (587)
                      ..++|.+...+.+.+.+                                ..+.+|.+|.++..+++.++..+| +...+.
T Consensus       320 ~~l~p~l~~~l~~~d~d--------------------------------~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~  366 (462)
T 1ibr_B          320 QYLVPILTQTLTKQDEN--------------------------------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPH  366 (462)
T ss_dssp             HHHHHHHHHHTTCCCSS--------------------------------CCTTCCSHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred             hhccHHHHHHHHhcccc--------------------------------cccccchHHHHHHHHHHHHHHhcc-HHHHHH
Confidence            33344443333211000                                024455555555555555555555 233445


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----H
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----E  509 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----~  509 (587)
                      ++|.+...+.|++|.+|.+|+.+++.++.....+   .....++|.+...++|+++.+|.+|+.+++.++..++.    .
T Consensus       367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  446 (462)
T 1ibr_B          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND  446 (462)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCST
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            5555555555555556665555555555433211   13345556666666666666666666666666554433    2


Q ss_pred             HHHhhHHHHHHhhc
Q 007842          510 ITCSRLLPVVINAS  523 (587)
Q Consensus       510 ~~~~~il~~l~~~l  523 (587)
                      .+.+.++|.++..+
T Consensus       447 ~~l~~ll~~Ll~~L  460 (462)
T 1ibr_B          447 VYLAPLLQCLIEGL  460 (462)
T ss_dssp             TTHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            34455555555544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=2.8e-22  Score=210.05  Aligned_cols=474  Identities=15%  Similarity=0.092  Sum_probs=322.3

Q ss_pred             ccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhc
Q 007842           74 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY  153 (587)
Q Consensus        74 l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~  153 (587)
                      |..+.++.......+|.|..++.++++.+|..|+.+|..++........   +                          .
T Consensus         2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---i--------------------------~   52 (644)
T 2z6h_A            2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---I--------------------------M   52 (644)
T ss_dssp             ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---H--------------------------T
T ss_pred             cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---H--------------------------H
Confidence            3444555555566788888888899999999999999999875432110   0                          0


Q ss_pred             CCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          154 PSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                            .....++.+...+. ++++.+|..++.+|..++..-..  .......+|.+..+++++++.+|..++.+|..++
T Consensus        53 ------~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~  126 (644)
T 2z6h_A           53 ------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL  126 (644)
T ss_dssp             ------TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ------hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  00123333444433 34677777777777766543211  1122346777888888888888888888888887


Q ss_pred             hhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCh-HHHHHHHHHh
Q 007842          231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE-AEVRIAAAGK  303 (587)
Q Consensus       231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~  303 (587)
                      .....   .......+|.+.+++.+++++++..++.+|..++...++   .......++.++.++++.+ ..++..++.+
T Consensus       127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~  206 (644)
T 2z6h_A          127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV  206 (644)
T ss_dssp             HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence            65432   112356788888888888889999888888887742110   1112356788888887654 6678888888


Q ss_pred             HHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 007842          304 VTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (587)
Q Consensus       304 l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (587)
                      |..++..-...  ......++.+..++.+.+..++..++.++..++...........++|.+..++.+.++++|..++.+
T Consensus       207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a  286 (644)
T 2z6h_A          207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  286 (644)
T ss_dssp             HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            88887533222  2223578888999999999999999999999886543333344678999999999999999999999


Q ss_pred             hhhhhhhhch--h-hHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhChh------hhHHHHHHHHHHhcCCCc-
Q 007842          382 LDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV-  449 (587)
Q Consensus       382 l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-  449 (587)
                      |..++..-..  . ......+|.+..++.+.  .+.+|..++.+++.++...+..      ......+|.+..++.++. 
T Consensus       287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~  366 (644)
T 2z6h_A          287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  366 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence            9998763211  1 12234678888877653  3799999999999886432211      122346788889998875 


Q ss_pred             hHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhccCCc----------------------hhHHHHHHHHHHHhhcc
Q 007842          450 YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPV  505 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~----------------------~~~R~~a~~~l~~l~~~  505 (587)
                      +.+|..|+.+++++...-.  .......++|.+.+++.+.+                      ..++..++.++..++..
T Consensus       367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~  446 (644)
T 2z6h_A          367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  446 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence            7999999999999874211  11234567788877776543                      34566777777777653


Q ss_pred             cChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          506 MGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       506 ~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .....  .....+|.+.+++.++++++|..++.+|.++...-...  ......++.|.+++.+++++||..|..+|..+.
T Consensus       447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~  526 (644)
T 2z6h_A          447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  526 (644)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            21111  13567899999999999999999999999987531111  222346788999999999999999999999887


Q ss_pred             H
Q 007842          582 H  582 (587)
Q Consensus       582 ~  582 (587)
                      +
T Consensus       527 ~  527 (644)
T 2z6h_A          527 E  527 (644)
T ss_dssp             T
T ss_pred             c
Confidence            6

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=4.4e-22  Score=211.48  Aligned_cols=489  Identities=14%  Similarity=0.072  Sum_probs=340.1

Q ss_pred             HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--H--HHHHH
Q 007842           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELR  165 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~  165 (587)
                      .+...+.+++..+|..+...+.....    ..+....+|.+..++.+++..+|..|+..++.++......  .  ...++
T Consensus       119 ~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i  194 (780)
T 2z6g_A          119 TNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV  194 (780)
T ss_dssp             -------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence            33444456677888888777765422    1233556777777777777788888888888777643211  1  13567


Q ss_pred             HHHHHhcC-CCChHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhh
Q 007842          166 SIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCV  239 (587)
Q Consensus       166 ~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~  239 (587)
                      +.+..++. +.++.+|..++.+|..++..-..  .......++.+..++++.++.+|..|+.+|..++...+..   ...
T Consensus       195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~  274 (780)
T 2z6g_A          195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL  274 (780)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence            77776665 45899999999999997654211  1223457888999999999999999999999998764331   123


Q ss_pred             hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhhCHH-
Q 007842          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE-  314 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~-  314 (587)
                      ...++.+..++.++++.++..++.++..++....   ........++.++.++++.+. ..+..++.++..++..-... 
T Consensus       275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  354 (780)
T 2z6g_A          275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  354 (780)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence            5688999999999999999999999987763110   011223567888888887654 45567778888777532222 


Q ss_pred             -HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh-
Q 007842          315 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-  392 (587)
Q Consensus       315 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  392 (587)
                       .....+++.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+|..++..-... 
T Consensus       355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~  434 (780)
T 2z6g_A          355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK  434 (780)
T ss_dssp             HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence             223456889999999999999999999999887655432233568899999999999999999999999987642111 


Q ss_pred             --hHHhhHHHHHHHHhcC-CCh-HHHHHHHHHHHHHHHhhCh------hhhHHHHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 007842          393 --LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDKV-YSIRDAAANNLK  461 (587)
Q Consensus       393 --~~~~~~l~~l~~~~~~-~~~-~vR~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~  461 (587)
                        ......+|.+.+++.+ .++ .+|..++.+++.++...+.      .......+|.+..++.+++ +.+|..|+.+|+
T Consensus       435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~  514 (780)
T 2z6g_A          435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR  514 (780)
T ss_dssp             HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence              1123467788887765 344 8999999999988642221      1112235788888888776 499999999999


Q ss_pred             HHHHHhC--hHHHhhhhHHHHHhhccCCc----------------------hhHHHHHHHHHHHhhcccChH--HHHhhH
Q 007842          462 RLAEEFG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPVMGSE--ITCSRL  515 (587)
Q Consensus       462 ~l~~~~~--~~~~~~~l~~~l~~~l~d~~----------------------~~~R~~a~~~l~~l~~~~~~~--~~~~~i  515 (587)
                      ++.....  .......++|.+.+++.+.+                      ..++..++.+|+.++......  ......
T Consensus       515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~  594 (780)
T 2z6g_A          515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT  594 (780)
T ss_dssp             HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc
Confidence            9974111  11223456777777766543                      346677888888876421111  123557


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      +|.+..++.++++++|..++.+|.++...-...  ......++.|.+++.+++++||..|..||..+..
T Consensus       595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            899999999999999999999999987431111  2233467889999999999999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=4.2e-21  Score=198.31  Aligned_cols=570  Identities=15%  Similarity=0.127  Sum_probs=397.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhh---------ChHhh-----hh---hhhhhhhh-ccC--CcHHHHHHHHHH
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARAL---------GEERT-----RK---ELIPFLSE-NND--DDDEVLLAMAEE   70 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~---------~~~~~-----~~---~l~p~l~~-~~~--~~~~v~~~~~~~   70 (587)
                      +..+..-|.+++.+.-.++...+..+-..+         ||+..     ..   .++-.|.. ..+  -+...|..+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~  173 (810)
T 3now_A           94 VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIEL  173 (810)
T ss_dssp             HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHH
Confidence            456778888888877777766666543222         11111     11   22222222 222  234567776666


Q ss_pred             hccccccCCC--cchHh---hhHHHHhhhhcch----------hhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHH
Q 007842           71 LGVFIPYVGG--VEHAH---VLLPPLETLCTVE----------ETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVK  131 (587)
Q Consensus        71 l~~l~~~~~~--~~~~~---~l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~  131 (587)
                      +-+.+++-..  .....   -+..+|.-..+.+          .++.|..+.-++.++.+.+..    +.+.+.+-.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  253 (810)
T 3now_A          174 ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIK  253 (810)
T ss_dssp             HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            6555543211  11111   1222222111211          357999999999999998874    445556667777


Q ss_pred             HHhcCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHH
Q 007842          132 RLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMS  205 (587)
Q Consensus       132 ~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~  205 (587)
                      ..........+..++..++.+++..++.     .....++.+..++.++++.++..+..+++..+..-.. +.+.+.-.|
T Consensus       254 ~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~  333 (810)
T 3now_A          254 DKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVD  333 (810)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHH
T ss_pred             HHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcH
Confidence            7666666666778888888888877553     2346789999999999999999999999997665221 112222248


Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcC-----h---hhhhhchHHHHHHhccCC--cHHHHHHHHHHHHHHHHHhCC-
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE-----P---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-  274 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~-  274 (587)
                      .+..+++++++.+|..|+.+|..++...+     +   +.....+.+.+.+++.++  ++.+|..++.+|..+...-.. 
T Consensus       334 ~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk  413 (810)
T 3now_A          334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK  413 (810)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence            89999988888999999999999875322     1   112346788888888777  789999999999988642111 


Q ss_pred             -Ccc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-----------------------------------HHHHH
Q 007842          275 -EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELAI  317 (587)
Q Consensus       275 -~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~~  317 (587)
                       ... ....+|.++.++++++..++..++.+|..++....                                   ...+.
T Consensus       414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve  493 (810)
T 3now_A          414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN  493 (810)
T ss_dssp             HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence             111 23589999999999899999999999999987431                                   01122


Q ss_pred             HhHhHHHHHhccCCcHHHHHHHHHHHHccccccch-h-HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhH-
Q 007842          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-  394 (587)
Q Consensus       318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-  394 (587)
                      ...+|.+..++.++++.+|..+++++.+++..... . ....-.+|.+..++++.++.+|..|+++|..++....++.. 
T Consensus       494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~  573 (810)
T 3now_A          494 EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF  573 (810)
T ss_dssp             TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence            35789999999999999999999999999853211 1 12334689999999999999999999999998865433321 


Q ss_pred             ----HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhh---ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007842          395 ----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (587)
Q Consensus       395 ----~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                          ....+|.+.+++.+. +...+..++.++..++..-   .........+|.+..++.+++..||.+|+.++++++. 
T Consensus       574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-  652 (810)
T 3now_A          574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-  652 (810)
T ss_dssp             TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-
T ss_pred             cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-
Confidence                124688888888754 3344556777787776531   1111223457888888889999999999999999975 


Q ss_pred             hChH---HHh--hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--HH-HH-hhHHHHHHhhcCCCChhHHHHHHHH
Q 007842          467 FGPE---WAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI-TC-SRLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       467 ~~~~---~~~--~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--~~-~~-~~il~~l~~~l~d~~~~vR~~~~~~  537 (587)
                       +++   .+.  ...++.+..++..++..+|..|+.+|+++......  .. +. ...+|.+..++.+++..+|..++.+
T Consensus       653 -~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          653 -SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             -SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             -ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence             222   122  35789999999999999999999999999863221  22 23 5789999999999999999999999


Q ss_pred             HHHhhhhhch---HHHHhhHHHHHHHhcCCC---CccHHHHHHHHHHHHHH
Q 007842          538 LQSLIPIVDQ---SMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDH  582 (587)
Q Consensus       538 l~~l~~~~~~---~~~~~~i~~~l~~l~~d~---d~~Vr~~a~~al~~l~~  582 (587)
                      +.++...-+.   ......+++.|..++.++   +.+++..|..||+.+.+
T Consensus       732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            9999864221   133456789999987655   67899999999998875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=1.2e-21  Score=208.17  Aligned_cols=515  Identities=11%  Similarity=0.028  Sum_probs=345.8

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcch---Hhh
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEH---AHV   86 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~---~~~   86 (587)
                      +..+++.|.+++...|..+++.+.....    .......+|.+...+ +.+..+|..++.++++++..-.....   ...
T Consensus       117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~  192 (780)
T 2z6g_A          117 HPTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ  192 (780)
T ss_dssp             ---------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence            4789999999999999988887764422    122245666666643 56778999999999988652111000   123


Q ss_pred             hHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh---HH
Q 007842           87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---IL  160 (587)
Q Consensus        87 l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~  160 (587)
                      .++.|..++. ++++.+|..|+.+|..++..-..  .......+|.+..++.+.+..++..|+..+..++.....   ..
T Consensus       193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v  272 (780)
T 2z6g_A          193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV  272 (780)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred             hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence            5555555554 45899999999999998764221  122345788888888888888888899888887654322   12


Q ss_pred             -HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCch-hHHHHHHHHHHHHhhhcCh
Q 007842          161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       161 -~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~  235 (587)
                       ....++.+..++.+++..++..++.++..++.....   .......++.+..++.+.++ .++..++.++..++..-..
T Consensus       273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~  352 (780)
T 2z6g_A          273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN  352 (780)
T ss_dssp             HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred             HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence             356889999999999999999999999877742110   11223346666667766654 4555677778777742211


Q ss_pred             --hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        .......++.+..++.+.+..++..++.++..++...........++|.+..++++.++.+|..++.+|..++..-..
T Consensus       353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~  432 (780)
T 2z6g_A          353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  432 (780)
T ss_dssp             HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence              222345688999999999999999999999999876554434457899999999999999999999999999764211


Q ss_pred             H---HHHHhHhHHHHHhccCC-c-HHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCCh-HHHHHHHHh
Q 007842          314 E---LAIQHILPCVKELSSDS-S-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFP-DVRLNIISK  381 (587)
Q Consensus       314 ~---~~~~~i~~~l~~~~~d~-~-~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~-~vr~~a~~~  381 (587)
                      .   ......++.+.+++.+. + ..+|..++.+|++++...+..      ......+|.+..++.+.+. .+|..++.+
T Consensus       433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  512 (780)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence            1   11134677777777653 3 489999999999997543321      1233568999999988764 999999999


Q ss_pred             hhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       382 l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      |+.++..-...  .....++|.+.+++.+.++.+|..++.+++.       ..+          .-......++..++.+
T Consensus       513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n-------q~~----------~~~~~~~~v~~~a~~a  575 (780)
T 2z6g_A          513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ-------QQF----------VEGVRMEEIVEACTGA  575 (780)
T ss_dssp             HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-------------CC----------STTCCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc-------chh----------hcccChHHHHHHHHHH
Confidence            99998532111  1123567888888777777666654332221       000          0012335688888888


Q ss_pred             HHHHHHHhCh--HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHH
Q 007842          460 LKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       460 l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~  535 (587)
                      |+.++..-..  .......+|.+.+++.+++..+|..++.++..++..-....  .....++.+.++++++++.||..++
T Consensus       576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~  655 (780)
T 2z6g_A          576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA  655 (780)
T ss_dssp             HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            8887631110  11235678999999999999999999999999874211111  1234678899999999999999999


Q ss_pred             HHHHHhhhhhc
Q 007842          536 KVLQSLIPIVD  546 (587)
Q Consensus       536 ~~l~~l~~~~~  546 (587)
                      .+|..+...-+
T Consensus       656 ~aL~~l~~~~~  666 (780)
T 2z6g_A          656 AVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHcCCh
Confidence            99999987544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.91  E-value=8.5e-22  Score=201.87  Aligned_cols=377  Identities=11%  Similarity=0.064  Sum_probs=277.9

Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhC---CC
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PE  275 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~---~~  275 (587)
                      ++.+...++++++.+|..|+..+..+......    ......++|.+..++.++ ++.+|..++.+|+.++....   ..
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34444445555666666676666666543211    112345778888888876 78888888888888775211   01


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc-c
Q 007842          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G  351 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~  351 (587)
                      ......+|.+..+++++++.+|..|+.+|+.++...+.   ......++|.+..++.+.++.+|..+++++..++..- +
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            11235788888888888899999999999998864211   1223457888999999899999999999999988543 1


Q ss_pred             --hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--h-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~  426 (587)
                        .......++|.+..++.+.++.++..++.+|..++.....  . .....++|.+..++.++++.+|..++.+++.++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence              2234567889999999999999999999999998854221  1 1223678999999999999999999999998874


Q ss_pred             hhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhccCCchhHHHHHHHHH
Q 007842          427 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAI  499 (587)
Q Consensus       427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~l  499 (587)
                      ..+   ...+...++|.+..++.++++.+|..|+.+|+.++.. ..+    .+...++|.+..++.++++.+|..++++|
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  407 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  407 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            321   1112235788899999999999999999999998752 122    12356899999999999999999999999


Q ss_pred             HHhhcccCh--HH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------------HHHhhHHHHHH
Q 007842          500 SLLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLV  559 (587)
Q Consensus       500 ~~l~~~~~~--~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~  559 (587)
                      ++++...++  +.    ....++|.+..++.++++.+|..++.+|..++......              ......++.|.
T Consensus       408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~  487 (530)
T 1wa5_B          408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF  487 (530)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence            999875443  22    23458899999999999999999999999998754321              11233577888


Q ss_pred             HhcCCCCccHHHHHHHHHHHHH
Q 007842          560 ELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       560 ~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .+..+++++|+..|..++..+-
T Consensus       488 ~L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          488 NCQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             GGGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHHcCCCHHHHHHHHHHHHHHC
Confidence            8999999999999988887654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.91  E-value=2.4e-21  Score=200.01  Aligned_cols=475  Identities=13%  Similarity=0.112  Sum_probs=341.4

Q ss_pred             CCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcc
Q 007842            4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE   82 (587)
Q Consensus         4 ~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~   82 (587)
                      |.+.-.-+..+++.+.|++...|..+.-.+..++.. .++.. ..+++.+.. ..+.++.+|..+..+++++.    .++
T Consensus        44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~  117 (591)
T 2vgl_B           44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDK  117 (591)
T ss_dssp             TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGG
T ss_pred             CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHH
Confidence            333333356788899999999998888777776542 23322 233455544 44667788888888888773    467


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (587)
                      ....+.|.+.+++.|+++.||+.|+.++..++... ++.+. ..+.|.+..+..|++..++..|+..++.+.+..++.  
T Consensus       118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            78888898999999999999999999999999854 33333 368899999999888899999999999888765321  


Q ss_pred             --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC--h
Q 007842          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P  235 (587)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~  235 (587)
                        .....++.+...+.+.+++.+..+++.++.+...  ++.....+++.+..++++.++.|+..|+.++..+.+.++  +
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~  274 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS  274 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence              2234444555555677899998888877665422  223446678888888899999999999999999876542  2


Q ss_pred             h---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842          236 Q---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (587)
Q Consensus       236 ~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      +   .....+.+.+..+.+ +++.+|..++.+++.++...+.-. ...+- .+....+|+ +.||..++..+..++..-+
T Consensus       275 ~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          275 DYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             BSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh
Confidence            2   122345565655554 789999999999999998644321 11111 222223444 9999999998888764322


Q ss_pred             HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       313 ~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (587)
                          .+.+++.+...+.+.++.+|..++.+++.++..++.  ..+.+++.+..++++....++..++.++..+....+..
T Consensus       351 ----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~  424 (591)
T 2vgl_B          351 ----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK  424 (591)
T ss_dssp             ----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS
T ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch
Confidence                256778888888999999999999999999987643  24567899999999999999999998888887654322


Q ss_pred             hHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH
Q 007842          393 LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                        .+.+++.+.+.+. ..++.+|..++..+|..+.....   .+.++..+.+.+.+.+..||.+++.++.++....+.. 
T Consensus       425 --~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-  498 (591)
T 2vgl_B          425 --YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-  498 (591)
T ss_dssp             --CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred             --HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence              2456677777665 46788999999999887665532   2455666666777889999999999999998755432 


Q ss_pred             HhhhhHHHHHhhc-cC-CchhHHHHHHHHHHHhhc
Q 007842          472 AMQHITPQVLEMI-NN-PHYLYRMTILRAISLLAP  504 (587)
Q Consensus       472 ~~~~l~~~l~~~l-~d-~~~~~R~~a~~~l~~l~~  504 (587)
                       ....+..+++.. .| .++.+|..|...+.-+..
T Consensus       499 -~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~  532 (591)
T 2vgl_B          499 -TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST  532 (591)
T ss_dssp             -THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred             -HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence             123455555543 45 678999999988877643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=1e-21  Score=197.64  Aligned_cols=378  Identities=13%  Similarity=0.073  Sum_probs=270.4

Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhc-Ch---hhhhh-chHHHHHHhccCC-cHHHHHHHHHHHHHHHHHhCC---
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP---QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---  274 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~---~~~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~---  274 (587)
                      ++.+...++++++.+|..|+..+..+.... .+   ..... .++|.+.++++++ ++.+|..++.+++.++..-.+   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            344444445555566666666666554311 11   11122 5677777777776 788888888888887642100   


Q ss_pred             CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhHhHHHHHhccC-CcHHHHHHHHHHHHcccccc
Q 007842          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .......+|.+..+++++++.+|..++.+|+.++.....  . .....++|.+..++.+ .++.+|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            111245888999999998899999999999988864321  1 1224578888888885 78999999999999887543


Q ss_pred             -c--hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 007842          351 -G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (587)
Q Consensus       351 -~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l  424 (587)
                       +  .......++|.+..++.+.++.++..++.++..++......   .....++|.+..++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             1  12234678899999999999999999999999887643211   12245788888999999999999999999888


Q ss_pred             HHhhCh---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842          425 ASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       425 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                      +...+.   ......++|.+..++.++++.+|..|+.+++.++.....   ......++|.+..++.++++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            753211   111224788899999999999999999999998752111   12235788999999999999999999999


Q ss_pred             HHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---------HHHhhH-----HHHHHH
Q 007842          499 ISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVE  560 (587)
Q Consensus       499 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~  560 (587)
                      +++++....++.    ....++|.+..+++++++.+|..++.+|..++...+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999986544332    23468999999999999999999999999998754321         122333     577888


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007842          561 LTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       561 l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      +..+++.+|+..|..++..+-
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            889999999999888887654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=1.5e-21  Score=196.36  Aligned_cols=379  Identities=11%  Similarity=0.069  Sum_probs=288.5

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhh-HHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh---
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---  235 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~-~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---  235 (587)
                      ++.+.+.++++++.+|..++..+..++.....+.    ... .++|.+..+++++ ++.+|..++.++..++...+.   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5666777788899999999999999875322221    223 6788888888887 889999999999998864322   


Q ss_pred             hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhh
Q 007842          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL  311 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~  311 (587)
                      ......++|.+.++++++++.+|..++.+|+.++...+   .......+++.+..++++ .++.+|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            12235689999999999999999999999999986321   011123578999999985 78999999999999998643


Q ss_pred             CH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 007842          312 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       312 ~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  385 (587)
                      ++   ......++|.+..++.+.++.+|..+++++..++.....   ......++|.+..++.+.++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   122367889999999999999999999999999865322   112345789999999999999999999999999


Q ss_pred             hhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       386 ~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +...+..   .....++|.+.+++.++++.+|..++.+++.++....   .......++|.+..++.++++.||..|+.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8643321   1223688999999999999999999999999875211   111223578889999999999999999999


Q ss_pred             HHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HHHhhH-----HHHHHh
Q 007842          460 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN  521 (587)
Q Consensus       460 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~  521 (587)
                      ++.++....++.    ....++|.+.+++.++++.+|..++.++..+....+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999987544332    23568999999999999999999999999998643221         122222     566777


Q ss_pred             hcCCCChhHHHHHHHHHHHhhh
Q 007842          522 ASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       522 ~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                      +..++++.+|..+..++..+..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            7778888888888888877653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.90  E-value=4.9e-21  Score=198.13  Aligned_cols=530  Identities=10%  Similarity=0.017  Sum_probs=360.4

Q ss_pred             ccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhh
Q 007842            9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (587)
Q Consensus         9 ~~~~~l~~~l~s~~--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~   86 (587)
                      ..+..|+..+++..  .++|....+.+.++...+...               +...-...+.+.+.-..  .| .+. ..
T Consensus        10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---------------~~~~k~~~l~kli~~~~--~G-~d~-~~   70 (618)
T 1w63_A           10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---------------DNTYRCRNVAKLLYMHM--LG-YPA-HF   70 (618)
T ss_dssp             CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---------------CTTTHHHHHHHHHHHHH--TT-CCC-GG
T ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHH--cC-CCC-cc
Confidence            45889999999853  355555555555443332211               11122233333332211  23 222 23


Q ss_pred             hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHH
Q 007842           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~  166 (587)
                      +.....+++.+++...|+.+.-.+..++..- ++ ..-.....+.+-+.+++..+|..|+..++.+.   .++....+.+
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~  145 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG  145 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            3444445667888889988888888776542 22 22344555556667788889999999998886   3567788899


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchHHH
Q 007842          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV  245 (587)
Q Consensus       167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~  245 (587)
                      .+..++.|+++.||+.|+.+++.+....  +...+.+++.+..++.|.++.|+..|+.++..++..-+. ......+.|.
T Consensus       146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~  223 (618)
T 1w63_A          146 EVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ  223 (618)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            9999999999999999999999999864  334457788888899999999999999999998764322 1122344454


Q ss_pred             HHHhcc---------------CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhH
Q 007842          246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKV  304 (587)
Q Consensus       246 l~~~~~---------------d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l  304 (587)
                      +.+.+.               ..++..+...++.++.++..  .......+.+.+..++      ++.+..|...|++++
T Consensus       224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i  301 (618)
T 1w63_A          224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI  301 (618)
T ss_dssp             HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            443332               24677888888888877642  1111234555555543      234567888888887


Q ss_pred             HHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       305 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ..+..   .........+.+..++.++++.+|..++.+++.++...+.  ......+.+..++.|++..||..+++.+..
T Consensus       302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~  376 (618)
T 1w63_A          302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFA  376 (618)
T ss_dssp             HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence            76532   1222234667778888889999999999999998864322  234455678888999999999999999998


Q ss_pred             hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007842          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (587)
Q Consensus       385 l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      ++..-.    .+.+++.+.+.+.+.+..+|..++..++.++..+.+.  ....++.++.++.+....++..++..+..+.
T Consensus       377 l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii  450 (618)
T 1w63_A          377 LVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI  450 (618)
T ss_dssp             HCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred             Hccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            876422    2456777777778889999999999999999876543  3456778888888877778888888888888


Q ss_pred             HHhChHHHhhhhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChH---------HHHhhHHHHHHhhcC--CCChhHH
Q 007842          465 EEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIK  531 (587)
Q Consensus       465 ~~~~~~~~~~~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~il~~l~~~l~--d~~~~vR  531 (587)
                      .....  .....++.+.+.+.+  ........+++++|..+..+...         .....+.+.+..+++  ..++.+|
T Consensus       451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr  528 (618)
T 1w63_A          451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR  528 (618)
T ss_dssp             HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence            75442  234456666665553  23444557999999998643210         001223344444433  5689999


Q ss_pred             HHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          532 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       532 ~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      ..++.++.++....+..  .+.+...|..+..|.|.+||..|...+.-+.
T Consensus       529 ~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~  576 (618)
T 1w63_A          529 GYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFK  576 (618)
T ss_dssp             HHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            99999999998876532  4566777777889999999999999887765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=6.3e-21  Score=195.40  Aligned_cols=380  Identities=11%  Similarity=0.075  Sum_probs=285.3

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh---
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---  235 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---  235 (587)
                      .++.+...+.++++.+|..++..+..++.....+    .....++|.+..++.++ ++.+|..|+.+|..++...+.   
T Consensus        88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~  167 (530)
T 1wa5_B           88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  167 (530)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            3556666677778888888888888886543222    12345678888888876 788999999999888764322   


Q ss_pred             hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 007842          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      .......+|.+..++.++++.+|..|+.+|+.++...+   ........+|.+..++.+.++.+|..++.+|..++..-+
T Consensus       168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  247 (530)
T 1wa5_B          168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  247 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence            12234578888888888899999999999999875311   111223578999999999889999999999999986431


Q ss_pred             ---HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--hH-HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842          313 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       313 ---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (587)
                         .......++|.+..++.+.++.+|..++.++..++...+.  .. ....++|.+..++.+.++.+|..++.+|+.++
T Consensus       248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence               1234467889999999999999999999999998864321  11 22367899999999999999999999999987


Q ss_pred             hhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          387 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       387 ~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      ...+.   ......++|.+..++.++++.+|..++.+++.++... .+.    +...++|.+..++.++++.+|..|+.+
T Consensus       328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a  406 (530)
T 1wa5_B          328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA  406 (530)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            53221   1223467899999999999999999999999887521 111    223467888888899999999999999


Q ss_pred             HHHHHHHhCh--H----HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HH-----HhhHHHHH
Q 007842          460 LKRLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVV  519 (587)
Q Consensus       460 l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l  519 (587)
                      |+.++...+.  +    .....++|.+..++.++++.+|..++.++..+.......         .+     ....++.+
T Consensus       407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L  486 (530)
T 1wa5_B          407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI  486 (530)
T ss_dssp             HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence            9999876443  2    233568999999999999999999999999998643221         11     23357788


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ..+..++++.|+..+..+|..+...
T Consensus       487 ~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          487 FNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            8899999999999999999888754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=8.5e-20  Score=191.18  Aligned_cols=498  Identities=12%  Similarity=0.042  Sum_probs=336.4

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhh---hhhhhhhhhhcc-C-CcHHHHHHHHHHhccccccCCCcc--
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVGGVE--   82 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~l~~~~~~~~--   82 (587)
                      -+..|+..++++++.+|..|+..|..++........   ....+|.+...+ + ++.+++..++..|..+...-.+..  
T Consensus        15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i   94 (644)
T 2z6h_A           15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI   94 (644)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence            478899999999999999999999998864432211   124566666643 3 367888888888887764211000  


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh---HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                      .....++.|..++.++++.+|..|+.+|.+++...+...   .....+|.+..+..+++...+..++..+..+....++.
T Consensus        95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~  174 (644)
T 2z6h_A           95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES  174 (644)
T ss_dssp             HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence            112356778888889999999999999999987653321   24567888888888876666666777776666433221


Q ss_pred             ----HHHHHHHHHHHhcCCCC-hHHHHHHHHhHHHHHHhhcc--chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 007842          160 ----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (587)
Q Consensus       160 ----~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                          .....++.|..++.+.+ ..++..++.++..++..-..  .......++.+..++.+.+..++..++.+|..++..
T Consensus       175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~  254 (644)
T 2z6h_A          175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  254 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence                22345677777777654 56778888888887753211  112234678888888888899999999999999876


Q ss_pred             cChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHH
Q 007842          233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKF  307 (587)
Q Consensus       233 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l  307 (587)
                      .+.......++|.+.+++.++++.+|..++.+|+.++..-.   ........++.++.++.+.  .+.+|..++.+|+.+
T Consensus       255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL  334 (644)
T 2z6h_A          255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  334 (644)
T ss_dssp             CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            55433445688999999999999999999999999875310   0111234788888888753  279999999999999


Q ss_pred             HhhhCHH------HHHHhHhHHHHHhccCCc-HHHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCCChHHHHHH
Q 007842          308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       308 ~~~~~~~------~~~~~i~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      +...+..      ......+|.+.+++.+++ +.+|..++.++++++..-..  ......++|.+..++.+.+.++|..+
T Consensus       335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a  414 (644)
T 2z6h_A          335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT  414 (644)
T ss_dssp             TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred             hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence            7543321      122457888999988764 79999999999998754221  12234678889999988888888888


Q ss_pred             HHhhhh--hhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHHhcCCCchHHHH
Q 007842          379 ISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRD  454 (587)
Q Consensus       379 ~~~l~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~  454 (587)
                      +.+++.  +....                   .+..++..++.++..++.....  .......+|.+..++.+.+..+|.
T Consensus       415 ~~al~n~~~~~~~-------------------~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~  475 (644)
T 2z6h_A          415 SMGGTQQQFVEGV-------------------RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR  475 (644)
T ss_dssp             ---------CCSS-------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred             hhccccchhcccc-------------------cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHH
Confidence            776664  22111                   1233444555555544432110  001123578888899999999999


Q ss_pred             HHHHHHHHHHHHh--ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842          455 AAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  526 (587)
Q Consensus       455 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~  526 (587)
                      .|+.+|+.+...-  .........++.+.+++.+++..+|..|..+|+.+...-+..+.....+..+..++++.
T Consensus       476 ~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          476 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            9999999887421  11112244678888999999999999999999999886654322111355666666654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.88  E-value=4.5e-20  Score=189.18  Aligned_cols=377  Identities=11%  Similarity=0.081  Sum_probs=267.2

Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhcC-h---hhhhhchHHHHHHhccCCc-HHHHHHHHHHHHHHHHHhCC---C
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E  275 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~---~  275 (587)
                      +|.+..++.++++.+|..|+..+..+..... +   ......++|.+..++.+++ +.+|..|+.+|+.++.....   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            3444444455556666666666666544322 1   1223456777777777665 77888888888777752110   1


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhc-cCCcHHHHHHHHHHHHccccccc
Q 007842          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG  351 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~  351 (587)
                      ......+|.+..++.++++.+|..|+.+|+.++.....   ......++|.+..++ .+.++.++..++.++..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            11235788888888888888888888888888753211   111234677788877 67788899999999888876532


Q ss_pred             --hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~  426 (587)
                        .......++|.+..++.+.+++++..++.+|+.++......   .....++|.+..++.++++.+|..++.+++.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              22334667888888998888999999999998887543221   1223578888899999999999999999888875


Q ss_pred             hhCh---hhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842          427 QLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       427 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                      ....   ..+...++|.+..++.++ ++.+|..|+.+++.++.. ..+    .....++|.+..++.++++.+|..++.+
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            2211   112234678888888888 999999999999999852 222    1335788999999998999999999999


Q ss_pred             HHHhhcccChHHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--------------HHHhhHHHHHHH
Q 007842          499 ISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVE  560 (587)
Q Consensus       499 l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~~  560 (587)
                      +++++...+++..    ...+++.+..++.++++.++..++.+|..++...+..              ......++.+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            9999876443321    2467899999999999999999999999998654321              112334677888


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007842          561 LTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       561 l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      +..+++.+|+..|...+.++.
T Consensus       475 L~~~~~~~v~~~a~~il~~~~  495 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYW  495 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            889999999999999888764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=1.4e-19  Score=185.56  Aligned_cols=379  Identities=11%  Similarity=0.088  Sum_probs=289.4

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc----hhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhcCh---h
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      +|.+...+.++++.+|..++..+..++.....+    .....++|.+..++.+++ +.+|..|+.+|..++...+.   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            566666777888999999999999987754322    133456788888888776 89999999999998874322   1


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhC
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN  312 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      ......+|.+..++.++++.+|..++.+|+.++..-+.   .......++.++.++ .+.++.++..++.+|..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            22335788999999999999999999999999853110   111235788888988 67789999999999999987532


Q ss_pred             --HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842          313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       313 --~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  387 (587)
                        .......++|.+..++.+.++.++..++.++..++...+..   .....++|.+..++.+.++.++..++.+|+.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              22344678899999999999999999999999998654321   1233578999999999999999999999999986


Q ss_pred             hhchh---hHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          388 VIGID---LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       388 ~~~~~---~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      .....   .+...++|.+..++.++ ++.+|..++.+++.++.. ..+.    +...++|.+..++.+.+..+|..|+.+
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            33211   12245789999999988 999999999999998753 1211    223467888999999999999999999


Q ss_pred             HHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---------HH-----HhhHHHHHHh
Q 007842          460 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVIN  521 (587)
Q Consensus       460 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~~  521 (587)
                      |+.++....++.    ....+++.+..++.++++.++..++.++..+.......         .+     ....+..+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            999987633432    23568999999999999999999999999998643220         01     2334677888


Q ss_pred             hcCCCChhHHHHHHHHHHHhhhh
Q 007842          522 ASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       522 ~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      +.+++++.++..+...+..+...
T Consensus       475 L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCC
Confidence            88999999999999999988754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.87  E-value=3.2e-19  Score=183.36  Aligned_cols=475  Identities=12%  Similarity=0.037  Sum_probs=296.0

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHh-hh--hhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCCcchHh
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER-TR--KELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~-~~--~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~   85 (587)
                      +..|++.++++++.+|..|+..+..++....... ..  ...+|.+.+.+  .++.+++..++..+.++...   .+...
T Consensus        19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~~~   95 (529)
T 1jdh_A           19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REGLL   95 (529)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chhHH
Confidence            5666666666666666666666666553211000 00  02344444432  12344555555555544321   11111


Q ss_pred             -----hhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH-
Q 007842           86 -----VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (587)
Q Consensus        86 -----~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-  159 (587)
                           ..+|.|..++.++++.++..|+.+|..++..-+...                                    .. 
T Consensus        96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~------------------------------------~~i  139 (529)
T 1jdh_A           96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------------------------------MAV  139 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH------------------------------------HHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH------------------------------------HHH
Confidence                 133444444444455555555555555443321100                                    01 


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhcCh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+|.+..++.++++.++..++.++..++.....   .......++.+..++.+.+ ..++..+..++..++..-..
T Consensus       140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~  219 (529)
T 1jdh_A          140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN  219 (529)
T ss_dssp             HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred             HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence            2345778888888888999999998888887753110   0122234556666665554 45666777888777742211


Q ss_pred             --hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        .......++.+..++.++++.++..++.++..++...+........+|.+.+++.++++++|..++.+|..++..-..
T Consensus       220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  299 (529)
T 1jdh_A          220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence              122345788899999999999999999999999876544434457899999999999999999999999999764211


Q ss_pred             --H-HHHHhHhHHHHHhccC--CcHHHHHHHHHHHHccccccchh------HHHHhHHHHHHHhhcCCC-hHHHHHHHHh
Q 007842          314 --E-LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISK  381 (587)
Q Consensus       314 --~-~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~  381 (587)
                        . ......+|.+.+++.+  .++.+|..++.+++.++...+..      ......+|.+..++++.+ +.++..++.+
T Consensus       300 ~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~  379 (529)
T 1jdh_A          300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence              1 1223467777777764  34899999999999997643321      122346899999999876 5999999999


Q ss_pred             hhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       382 l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      ++.++..-...  .....++|.+.+++.+.++.+|..++..+....-.-|                 -....++..++.+
T Consensus       380 l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~-----------------~~~~~i~~~~~~a  442 (529)
T 1jdh_A          380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGA  442 (529)
T ss_dssp             HHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHH
T ss_pred             HHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc-----------------ccHHHHHHHHHHH
Confidence            99988532211  1224578888888888888998887776654110001                 1233455666666


Q ss_pred             HHHHHHHhC--hHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC--hHHHHhhHHHHHHhhcCCCChhHHHHHH
Q 007842          460 LKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       460 l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~~vR~~~~  535 (587)
                      +..++....  ........+|.+..++.+++..+|..+..+++++...-.  ........++.+..+++++++.||..+.
T Consensus       443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~  522 (529)
T 1jdh_A          443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA  522 (529)
T ss_dssp             HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHH
Confidence            666654211  112235678999999999999999999999999874211  0112345678899999999999999999


Q ss_pred             HHHHHh
Q 007842          536 KVLQSL  541 (587)
Q Consensus       536 ~~l~~l  541 (587)
                      .+|..+
T Consensus       523 ~aL~~l  528 (529)
T 1jdh_A          523 AVLFRM  528 (529)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999876

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.85  E-value=3.6e-18  Score=175.85  Aligned_cols=540  Identities=12%  Similarity=0.055  Sum_probs=353.9

Q ss_pred             CCCcccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcc
Q 007842            5 DEPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE   82 (587)
Q Consensus         5 ~~~~~~~~~l~~~l~s~~--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~   82 (587)
                      ..++--+..|+..+++..  .++|...-+.+.++...+..            +...+....+..+.+.+.-..  .| .+
T Consensus         7 ~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~------------~~~~~~~~k~~~l~Kli~l~~--~G-~d   71 (621)
T 2vgl_A            7 GEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKG------------DKALDGYSKKKYVCKLLFIFL--LG-HD   71 (621)
T ss_dssp             --CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHS------------SSCCCHHHHHHHHHHHHHHHH--HS-CC
T ss_pred             CCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHH--cC-CC
Confidence            345666888898888764  34555555555554332210            000122233444444432211  23 22


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHH
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  162 (587)
                      . ..+.+...+++.+++...|+.+.-++..+++.-+ + ..-.....+..-+.+++...|..|+..++.+..   ++...
T Consensus        72 ~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e-~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~  145 (621)
T 2vgl_A           72 I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-E-LIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAE  145 (621)
T ss_dssp             C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-H-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHH
T ss_pred             C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-H-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHH
Confidence            2 2334444457788899999999888888775432 2 222334445555556777888888888887743   66888


Q ss_pred             HHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhhccchhhh--HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--
Q 007842          163 ELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--  236 (587)
Q Consensus       163 ~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--  236 (587)
                      .+.+.+..++  .|.++.||+.|+.++..+....+  ...+  .+.+.+..++.|.++.|+.+|+..+..++..-+..  
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~  223 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK  223 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence            8999999999  99999999999999999998642  3333  67888889999999999999999998887653321  


Q ss_pred             hhhhchHHHHHHhccC-------------CcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C-------
Q 007842          237 DCVAHILPVIVNFSQD-------------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N-------  292 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d-------------~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---~d-~-------  292 (587)
                      ...+.+...+.+++.+             +++..+...++.++.++.. ++......+.+.+...+   .+ +       
T Consensus       224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~  302 (621)
T 2vgl_A          224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQH  302 (621)
T ss_dssp             THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence            1233344444444322             1566777777777655421 00111122333332222   11 1       


Q ss_pred             -h--HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhc-
Q 007842          293 -E--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-  368 (587)
Q Consensus       293 -~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-  368 (587)
                       +  ..|...|++++..+.   +...........+..++.++++.+|..++.++..++...+.........+.+..+++ 
T Consensus       303 ~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~  379 (621)
T 2vgl_A          303 SNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT  379 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence             2  266666777666653   233444667788888888899999999999999998765432334556677888888 


Q ss_pred             CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCC
Q 007842          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (587)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  448 (587)
                      |++..||..++..+..++..    ...+.++..+.+.+.+.+...|..++..++.++..+.+.  .+.++..+..++.+.
T Consensus       380 d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~  453 (621)
T 2vgl_A          380 ERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIA  453 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhh
Confidence            99999999999998887743    223677778888888889999999999999998876543  344667777777665


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCch--hHHHHHHHHHHHhhcccChHH-H-HhhHHHHHHhhcC
Q 007842          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASK  524 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~~R~~a~~~l~~l~~~~~~~~-~-~~~il~~l~~~l~  524 (587)
                      ...+...++..+..++.....  .....+..+.+.+.++..  .+-..+++.+|..+....... . ...++..+.+.+.
T Consensus       454 ~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~  531 (621)
T 2vgl_A          454 GDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH  531 (621)
T ss_dssp             GGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence            555666666666666643321  234456667777777653  344566799999876433210 0 1234556666677


Q ss_pred             CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 007842          525 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSID  581 (587)
Q Consensus       525 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~d~~Vr~~a~~al~~l~  581 (587)
                      +.++.||..++.++.++....+.  ..+.+...+.....  |.|.+||.+|..-+.-+.
T Consensus       532 ~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          532 LCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            88999999999999999876543  23456666666666  999999999998776654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.83  E-value=1.6e-18  Score=179.29  Aligned_cols=506  Identities=11%  Similarity=0.051  Sum_probs=236.6

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhh--hhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhh
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~--~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l   87 (587)
                      ++..+-+.+++++...|..++..+-.+ ...|.+..+  .+++.++   .+++-+.++...-.+..+.+  .+++.....
T Consensus        35 e~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~~~~~vik~~---~s~~~~~Krl~Yl~~~~~~~--~~~e~~~l~  108 (618)
T 1w63_A           35 ECAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHFGQLECLKLI---ASQKFTDKRIGYLGAMLLLD--ERQDVHLLM  108 (618)
T ss_dssp             HHHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGGGHHHHHHHH---HSSSHHHHHHHHHHHHHHCC--CCHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcchHHHHHHHH---cCCchHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence            345566666666666666666655543 334533211  1222222   13344444444444444433  122222334


Q ss_pred             HHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHH
Q 007842           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~  167 (587)
                      .+.|.+-+.++++.+|-.|+++|+.+..    ..+.+.+.|.+..+..+.+..+|..|+..++.++... ++....+++.
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~  183 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPA  183 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGG
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHH
Confidence            4445555556666666666666666541    1234455555555555555666666665555555433 2333355566


Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhcc-----chhhhHHHHHHHHhhh-----------CCchhHHHHHHHHHHHHhh
Q 007842          168 YTQLCQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ-----------DDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       168 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~  231 (587)
                      +..++.|.++.|+..++.++..++..-++     ....+.++..+..+..           ..++..+...++.++.++.
T Consensus       184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~  263 (618)
T 1w63_A          184 TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR  263 (618)
T ss_dssp             TTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence            66666666666666666666665543211     1122233333333221           1244455556666666555


Q ss_pred             hcChhhhhhchHHHHHHhc------cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842          232 LLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       232 ~~~~~~~~~~l~~~l~~~~------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (587)
                      .-+..  .+.+.+.+.+++      ++.+..|...+++++..+..   .........+.+..++.++++++|..++.++.
T Consensus       264 ~~~~~--~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~  338 (618)
T 1w63_A          264 NDDDS--SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLL  338 (618)
T ss_dssp             TCHHH--HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred             CCHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            43221  122333333321      23344555555555544311   11111234455555566666666666666666


Q ss_pred             HHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 007842          306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       306 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  385 (587)
                      .++...+.  ......+.+..++.|++..+|..+++.+..++..-.    .+.+++.+...+.+.+.++|..++.+++.+
T Consensus       339 ~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~l  412 (618)
T 1w63_A          339 KTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLA  412 (618)
T ss_dssp             HHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            66554221  123334455555566666666666666666554221    123344444455555566666666666666


Q ss_pred             hhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHH
Q 007842          386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRL  463 (587)
Q Consensus       386 ~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l  463 (587)
                      +..+....  ...++.+.+++.+....++..++..+..+....+ +.... .++.+...+.+  ....+...++.++|++
T Consensus       413 a~k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-~v~~L~~~l~~~~~~~~~~~~~~wilGEy  488 (618)
T 1w63_A          413 AEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-TVQRLYKAILGDYSQQPLVQVAAWCIGEY  488 (618)
T ss_dssp             HHSSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-HHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred             HHHhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-HHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence            65543221  2344555554444433344434444444443321 11111 11122222221  1223333466666666


Q ss_pred             HHHhCh---------HHHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHH
Q 007842          464 AEEFGP---------EWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       464 ~~~~~~---------~~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~  532 (587)
                      ...+..         ......+++.+..+++  ..+..+|..++.++.++....+..  .+.+...+.....|.+.+||.
T Consensus       489 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrd  566 (618)
T 1w63_A          489 GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQ  566 (618)
T ss_dssp             HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHH
Confidence            654311         0001112222222222  345566666666666665544332  133334444455666666666


Q ss_pred             HHHHHHHHhhh
Q 007842          533 NVAKVLQSLIP  543 (587)
Q Consensus       533 ~~~~~l~~l~~  543 (587)
                      .|...+..+..
T Consensus       567 RA~~y~~ll~~  577 (618)
T 1w63_A          567 RAVEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            66666655543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.81  E-value=2.9e-17  Score=166.47  Aligned_cols=375  Identities=12%  Similarity=0.105  Sum_probs=261.6

Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhc--Ch--hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---Cc
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP  276 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~  276 (587)
                      +-+...+++++..++..|...+..+...-  ++  .....-++|.+.++++ ++++.++..|+.+|++++..-.+   ..
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            33444555666666666666666654321  11  2233446788888775 44578888888888888742110   11


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 007842          277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP  348 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~  348 (587)
                      .....+|.++.++++++..+|..|+.+|+.++.....   .......++.+..++.+++     ..+++.++.++..++.
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            2235789999999999999999999999998753211   1222346777777776543     3566777777777765


Q ss_pred             ccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842          349 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~  422 (587)
                      .-.   .......++|.+..++.+.+++++..++.+|..++..-...   .....++|.+.+++.++++.++..++.+++
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            321   22234578899999999999999999999999987543211   122457889999999999999999999998


Q ss_pred             HHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHH
Q 007842          423 LLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       423 ~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~  496 (587)
                      .++..-.   ........++.+..++.+++..+|..|+.++++++.....   ......++|.+..++.++++.+|..|+
T Consensus       300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            8764211   0111223456677888999999999999999998742111   123456889999999999999999999


Q ss_pred             HHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh---chH-HH-----HhhHHHHHHHhcC
Q 007842          497 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQS-MV-----EKTIRPCLVELTE  563 (587)
Q Consensus       497 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~l~~  563 (587)
                      ++|.+++.....+.    ....+++.+.++++++++.++..++.+|.++....   +.. .+     ....+..+..|..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999987554432    23567899999999999999999999999987542   211 11     2235677888888


Q ss_pred             CCCccHHHHHHHHHHH
Q 007842          564 DPDVDVRFFATQAIQS  579 (587)
Q Consensus       564 d~d~~Vr~~a~~al~~  579 (587)
                      +++.+|+..|.+.+.+
T Consensus       460 ~~n~~i~~~A~~iie~  475 (510)
T 3ul1_B          460 HENESVYKASLNLIEK  475 (510)
T ss_dssp             CSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999998887777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.80  E-value=7.3e-17  Score=164.54  Aligned_cols=375  Identities=12%  Similarity=0.107  Sum_probs=260.0

Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhcC--h--hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---Cc
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP  276 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~  276 (587)
                      +-+...++.+++..+..|+..+..+...-.  +  .....-++|.+.+++. ++++.++..|+.+|+.++..-..   ..
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333444455555555555555555432211  1  1233446777777764 45578888888888888743111   11


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 007842          277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP  348 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~  348 (587)
                      .....+|.++.++.+++..+|..|+.+|+.++..-..   .......++.+..++.+++     ..+...++.++..++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            2235788999999999999999999999988753211   1222346777887776543     3566777777777765


Q ss_pred             ccc---hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007842          349 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~  422 (587)
                      .-.   .......++|.+..++.+.+++++..++.+|..++..-...   .....++|.+.+++.++++.++..++.+++
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  318 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  318 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence            332   22234568899999999999999999999999887543211   123467889999999999999999999998


Q ss_pred             HHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHH
Q 007842          423 LLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       423 ~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~  496 (587)
                      .++..-.   ........++.+..++.+++..+|..|+.+|+.++.....   ......++|.+..++.+++..+|..|+
T Consensus       319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence            8864211   1111223567788899999999999999999999752111   123456899999999999999999999


Q ss_pred             HHHHHhhcccChHH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh---chH-HHH-----hhHHHHHHHhcC
Q 007842          497 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQS-MVE-----KTIRPCLVELTE  563 (587)
Q Consensus       497 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~-~~~-----~~i~~~l~~l~~  563 (587)
                      ++|++++.....+.    ....+++.+.++++++++.++..++.+|.++....   +.. .+.     ...+..+..|..
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  478 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  478 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence            99999987544432    23557899999999999999999999999987532   211 221     224667788888


Q ss_pred             CCCccHHHHHHHHHHH
Q 007842          564 DPDVDVRFFATQAIQS  579 (587)
Q Consensus       564 d~d~~Vr~~a~~al~~  579 (587)
                      +++.+|+..|...+++
T Consensus       479 ~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          479 HENESVYKASLNLIEK  494 (529)
T ss_dssp             CSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999877766654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.79  E-value=5.9e-18  Score=158.03  Aligned_cols=255  Identities=19%  Similarity=0.129  Sum_probs=182.8

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhH
Q 007842          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  359 (587)
                      .-++.+...++|+++.+|..|+.+|+.+..        +..++.+..++.|+++.+|..++.+++.+....   .....+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence            356777777888888888888888877652        345677777888888888888888887776321   112345


Q ss_pred             HHHHH-HhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHH
Q 007842          360 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (587)
Q Consensus       360 ~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  438 (587)
                      ++.+. .+++|+++.||..++.+|+.+....+  ...+.++|.+...++|+++.+|..++.+++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            56555 35678888888888888888764321  1124567788888888888999888888876532        1246


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHH
Q 007842          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (587)
Q Consensus       439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~  518 (587)
                      |.+...+.|+++.||..|+.+++.+..      .....++.+...++|+++.+|..++.+++.+..        +..+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence            677778888999999999988877621      023567788888888899999999999988863        456778


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007842          519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS  579 (587)
Q Consensus       519 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~d~~Vr~~a~~al~~  579 (587)
                      +...++|++  ||..++.+|+.+..        ..++|.|.+++. +++++++..+..++++
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            888887754  88889999888754        256777777654 4567788777777653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.79  E-value=1.3e-16  Score=161.59  Aligned_cols=379  Identities=10%  Similarity=0.072  Sum_probs=278.6

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhcCh---h
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      ++-+...++++++.++..+...+.++.+.-..+.    +..-.+|.|.++++. +++.++..|+.+|..++..-+.   .
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3445566788889999999999998876543332    233468889888864 4578999999999999864332   1


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC  308 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~  308 (587)
                      ....-.+|.+..++.+++..+|..|+.+|+.++..-+   ........++.+..++.+.+     ..+...++.++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            2233478999999999999999999999999985311   11122356788888887654     235666777777776


Q ss_pred             hhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842          309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (587)
Q Consensus       309 ~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (587)
                      ..-.+   ......++|.+.+++.++++.++..++.++..++......   .....++|.+..++.+.+..++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            53321   1334678899999999999999999999999998643221   12234789999999999999999999999


Q ss_pred             hhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842          383 DQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA  456 (587)
Q Consensus       383 ~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      +.++..-...   ......+|.+..++.+++..+|..++.++..++..-.   .......++|.+..++.+.+..+|..|
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            9987532211   1224566777888899999999999999998864311   111223478899999999999999999


Q ss_pred             HHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cChH-HH-----HhhHHHHHHhhc
Q 007842          457 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSE-IT-----CSRLLPVVINAS  523 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~~-~~-----~~~il~~l~~~l  523 (587)
                      +.+|++++.....+.    .....++.+.+++.+++..++..++.+|.++.+.   .+.. .+     ....+..+..+.
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  458 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  458 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence            999999987544432    2356889999999999999999999999998753   2221 11     123466777788


Q ss_pred             CCCChhHHHHHHHHHHHhhh
Q 007842          524 KDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~  543 (587)
                      .+++.+|+..+.+.|...+.
T Consensus       459 ~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          459 RHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             GCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCCHHHHHHHHHHHHHHCC
Confidence            88999999999999887654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.78  E-value=7.2e-16  Score=157.20  Aligned_cols=379  Identities=11%  Similarity=0.081  Sum_probs=278.4

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcCh---h
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      ++-+...+.++++..+..++..+..+...-..+.    ....++|.+..+++ ++++.++..|+.+|..++..-+.   .
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4455566778889999888888888765433322    33447888888885 45678999999999999865432   1


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC  308 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~  308 (587)
                      ....-.+|.+..++.+++..+|..|+.+|+.++..-+   ........++.++.++.+.+     ..+...++.++..++
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            2334578999999999999999999999999985211   11122356888888887654     235666777777776


Q ss_pred             hhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 007842          309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (587)
Q Consensus       309 ~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (587)
                      ..-.+   ......++|.+..++.++++.++..+++++..++......   .....++|.+..++.+.+..++..++.++
T Consensus       238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            54322   2334678899999999999999999999999987643221   12235789999999999999999999999


Q ss_pred             hhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHH
Q 007842          383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA  456 (587)
Q Consensus       383 ~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      +.++..-..   .......+|.+..++.+++..+|..++.+++.++..-.   .......++|.+..++.+.+..+|..|
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            998753221   12234567888899999999999999999998875311   111223478899999999999999999


Q ss_pred             HHHHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc---cCh-HHHH-----hhHHHHHHhhc
Q 007842          457 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EITC-----SRLLPVVINAS  523 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~---~~~-~~~~-----~~il~~l~~~l  523 (587)
                      +.+|++++..-..+.    ....+++.|.+++..++..++..++.+|.++.+.   .+. +.+.     ...+..+..+.
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  477 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  477 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence            999999987544432    2356799999999999999999999999998752   222 1121     22356677778


Q ss_pred             CCCChhHHHHHHHHHHHhhh
Q 007842          524 KDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       524 ~d~~~~vR~~~~~~l~~l~~  543 (587)
                      .+++..|+..|.+.|...+.
T Consensus       478 ~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          478 RHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHHC-
T ss_pred             cCCCHHHHHHHHHHHHHHCC
Confidence            88999999999988877654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.78  E-value=2.3e-17  Score=154.00  Aligned_cols=255  Identities=15%  Similarity=0.067  Sum_probs=199.4

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  320 (587)
                      ..++.+...+.|+++.+|..++..|+.+.        ....++.+..+++|+++.+|..++.+|+.+...  .. ..+.+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~-~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KK-CEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TT-THHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cc-cchHH
Confidence            45677788889999999999999998875        245788899999999999999999999887532  11 12345


Q ss_pred             hHHHH-HhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842          321 LPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       321 ~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  399 (587)
                      ++.+. .++.|+++.||..++.+++.++...+  ...+.++|.+...++|+++.||..++.+++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            66665 35688999999999999998864321  1234678889999999999999999999998754        3468


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 007842          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (587)
Q Consensus       400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  479 (587)
                      |.+..++.|+++.+|..++..++.+...      .+..++.+...+.|+++.||..|+.+|+.+.        ....+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence            8888899999999999999999876311      2346788888999999999999999998764        2457888


Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC-CChhHHHHHHHHHHH
Q 007842          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQS  540 (587)
Q Consensus       480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~  540 (587)
                      +...++|++  +|..++.+++.+..        +..+|.+..++++ +++.++..++..+..
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            888888865  89999999999865        4678888888764 577788777777653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.76  E-value=1.9e-14  Score=157.72  Aligned_cols=563  Identities=11%  Similarity=0.073  Sum_probs=330.2

Q ss_pred             HHHHHhcC--ccHHHHHHHhhcHHHHHHh-h---------ChH---hhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc
Q 007842           13 VLIDELKN--DDIQLRLNSIRRLSTIARA-L---------GEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY   77 (587)
Q Consensus        13 ~l~~~l~s--~~~~~R~~a~~~l~~~~~~-~---------~~~---~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~   77 (587)
                      .|++-+.+  .+..+|..|+..++..... .         .++   ..++.+++.+..   .+..+|..++.++..++..
T Consensus        39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~  115 (960)
T 1wa5_C           39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADS  115 (960)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHh
Confidence            34444433  4678999999999865433 1         211   123344444433   3478899999998887653


Q ss_pred             CCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh-----hh-------HHhh---HHHHHHHH---hcCCCC
Q 007842           78 VGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-----SD-------LVDW---YIPLVKRL---AAGEWF  139 (587)
Q Consensus        78 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~-------~~~~---l~~~l~~l---~~~~~~  139 (587)
                      -. ++.++.+++.|.+.++++++..+..++.++..+++....     +.       +...   +++++..+   ..+...
T Consensus       116 d~-p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~  194 (960)
T 1wa5_C          116 DF-PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN  194 (960)
T ss_dssp             HS-TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred             hC-ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            22 245788999998888888889999999999999986542     11       1111   12222222   232211


Q ss_pred             c---ch------hhHHhhhHhhc-CCCChH---HHHHHHHHHHHhcCCC-----------C----hHHHHHHHHhHHHHH
Q 007842          140 T---AR------VSACGLFHIAY-PSAPDI---LKTELRSIYTQLCQDD-----------M----PMVRRSAASNLGKFA  191 (587)
Q Consensus       140 ~---~r------~~a~~~l~~~~-~~~~~~---~~~~l~~~l~~l~~d~-----------~----~~vr~~~~~~l~~l~  191 (587)
                      .   .+      ..+++++..+. ...++.   ....+.+.+...+...           .    ..+|+.+++.+..++
T Consensus       195 ~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~  274 (960)
T 1wa5_C          195 NKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYT  274 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHH
Confidence            1   12      22444444332 233332   2345556655544221           1    357888899998888


Q ss_pred             Hhhccc--hhhhHHHHHHHHhhh-----CCchhHHHHHHHHHHHHhhhcCh-h-----hhhhchH-HHHHHhc-------
Q 007842          192 ATVEPA--HLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLEP-Q-----DCVAHIL-PVIVNFS-------  250 (587)
Q Consensus       192 ~~~~~~--~~~~~l~~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~l~-~~l~~~~-------  250 (587)
                      ...++.  .+.+.+++.+...+.     ..++.++..+++.+..+++.-.. .     .....++ +.+...+       
T Consensus       275 ~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~  354 (960)
T 1wa5_C          275 TRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDV  354 (960)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHH
Confidence            765331  233444444444443     34568888899988887643110 0     1222222 2222211       


Q ss_pred             ----------------cCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC------CChHHHHHHHHHhHHHHH
Q 007842          251 ----------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKVTKFC  308 (587)
Q Consensus       251 ----------------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~  308 (587)
                                      .+..+..|.+|...+..++..++ +.....+++.+...+.      +.+|..|.+|+.+++.++
T Consensus       355 e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia  433 (960)
T 1wa5_C          355 ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA  433 (960)
T ss_dssp             TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence                            12234689999999999998876 3223345566555555      677999999999999997


Q ss_pred             hhh-----CHH------HHHHhHhHHHHHhccCC---cHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHH
Q 007842          309 RIL-----NPE------LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV  374 (587)
Q Consensus       309 ~~~-----~~~------~~~~~i~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  374 (587)
                      ...     +..      .+.+-+...+...+.|+   ++.+|..++++++.+++.+.+ .+...++|.+.+.+.|.+..|
T Consensus       434 ~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V  512 (960)
T 1wa5_C          434 INGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVV  512 (960)
T ss_dssp             BSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhH
Confidence            642     111      11111122233334566   899999999999999988754 457788899999999999999


Q ss_pred             HHHHHHhhhhhhhhhc----------hh---hHHhhHHHHHHHHhcCCC---h--HHHHHHHHHHHHHHHhhChhh--hH
Q 007842          375 RLNIISKLDQVNQVIG----------ID---LLSQSLLPAIVELAEDRH---W--RVRLAIIEYIPLLASQLGVGF--FD  434 (587)
Q Consensus       375 r~~a~~~l~~l~~~~~----------~~---~~~~~~l~~l~~~~~~~~---~--~vR~~~~~~l~~l~~~~~~~~--~~  434 (587)
                      |..|+.++..++....          .+   .+.+.+++.+..+++...   .  .....+.++++.++...+.+.  +.
T Consensus       513 ~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~  592 (960)
T 1wa5_C          513 YTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF  592 (960)
T ss_dssp             HHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH
T ss_pred             HHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999999887421          22   233455556666655531   1  123467777777777665322  33


Q ss_pred             HHHHHHHHHhc----CC-CchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc
Q 007842          435 DKLGALCMQWL----QD-KVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (587)
Q Consensus       435 ~~l~~~l~~~l----~d-~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~  506 (587)
                      +.+++.+...+    ++ .+...+..++.+++.++...+++.   +.+.++|.+...+..........+...++.+....
T Consensus       593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            44444444333    33 456778889999999998755432   45778888888776655566777777777776542


Q ss_pred             C-hHHHHhhHHHHHH--hhcCCCChhHHHHHHHHHHHhhhhhchHHH-HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          507 G-SEITCSRLLPVVI--NASKDRVPNIKFNVAKVLQSLIPIVDQSMV-EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       507 ~-~~~~~~~il~~l~--~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      . ...+...++|.+.  ..++.+. .+ ...+..+.......+.... .+.++..+.++..++..  +..+...++.+..
T Consensus       673 ~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~  748 (960)
T 1wa5_C          673 ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIML  748 (960)
T ss_dssp             SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHH
Confidence            1 1112345667666  5555432 22 2455555555443322111 13355555555555543  3667777777666


Q ss_pred             hhc
Q 007842          583 VMM  585 (587)
Q Consensus       583 ~~~  585 (587)
                      .++
T Consensus       749 ~~~  751 (960)
T 1wa5_C          749 LID  751 (960)
T ss_dssp             HSC
T ss_pred             HCC
Confidence            544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.76  E-value=2.8e-14  Score=156.38  Aligned_cols=555  Identities=13%  Similarity=0.078  Sum_probs=324.3

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC-cHHHHHHHHHHhccccccC----CCcc----
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIPYV----GGVE----   82 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~-~~~v~~~~~~~l~~l~~~~----~~~~----   82 (587)
                      +.+++.+.+.+..+|......+..|+....| ..|++++|.+.+.+.+ +...+..+..++..+.+..    .+.+    
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~  166 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE  166 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence            4667777777899999999999999988777 5789999999886643 3334444444554443311    1111    


Q ss_pred             -------hHhhhHHHHhhh---hcchhh---HHH------HHHHHHHHHHHhhcChhhHH---hhHHHHHHHHhcCC---
Q 007842           83 -------HAHVLLPPLETL---CTVEET---CVR------DKAVESLCRIGSQMRESDLV---DWYIPLVKRLAAGE---  137 (587)
Q Consensus        83 -------~~~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~~~---  137 (587)
                             +.+.+++++..+   +.++..   .+|      ..+++++..+...--++.+.   ..+.+.+..+....   
T Consensus       167 l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  246 (960)
T 1wa5_C          167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL  246 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCc
Confidence                   111122333222   333211   233      33444444433221122222   33445554443210   


Q ss_pred             ------------CCcchhhHHhhhHhhcCCCChH---HHHHHHHHHHHhcC-----CCChHHHHHHHHhHHHHHHhhc--
Q 007842          138 ------------WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAATVE--  195 (587)
Q Consensus       138 ------------~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~-----d~~~~vr~~~~~~l~~l~~~~~--  195 (587)
                                  ++..|..++.++..+....++.   +...+++.+...+.     ..+..++..+++.+..+++.-.  
T Consensus       247 ~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~  326 (960)
T 1wa5_C          247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF  326 (960)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH
T ss_pred             ccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHH
Confidence                        1234556666666555443332   34455555555443     3456788888888777664311  


Q ss_pred             ----cchhhhHHH-HHHHHhh-----------------------hCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842          196 ----PAHLKTDIM-SIFEDLT-----------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  247 (587)
Q Consensus       196 ----~~~~~~~l~-~~l~~l~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  247 (587)
                          .+.+.+.++ +++...+                       .++.++.|.+|...+..++...+ +...+.+++.+.
T Consensus       327 ~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~  405 (960)
T 1wa5_C          327 EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMK  405 (960)
T ss_dssp             GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHH
Confidence                112223333 2222221                       01223689999999999998877 445666777766


Q ss_pred             Hhcc------CCcHHHHHHHHHHHHHHHHHhC-CC-cccc-----chHHHH----HHhcCCC---hHHHHHHHHHhHHHH
Q 007842          248 NFSQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRM-----DLVPAY----VRLLRDN---EAEVRIAAAGKVTKF  307 (587)
Q Consensus       248 ~~~~------d~~~~vR~~a~~~l~~~~~~~~-~~-~~~~-----~l~~~l----~~~l~d~---~~~vr~~a~~~l~~l  307 (587)
                      +.++      +++|+.|.+|+.+++.++.... .. ....     .+.+.+    ...+.|+   .+.||..++.+++.+
T Consensus       406 ~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~  485 (960)
T 1wa5_C          406 GFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF  485 (960)
T ss_dssp             HHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence            6555      6789999999999999975421 11 1111     444443    3345666   899999999999999


Q ss_pred             HhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----------hh---HHHHhHHHHHHHhhcCCC---
Q 007842          308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----------KD---ATIEQLLPIFLSLLKDEF---  371 (587)
Q Consensus       308 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----------~~---~~~~~l~~~l~~~l~d~~---  371 (587)
                      ++.+.++ +...+++.+.+.+.|++..||..|+.++..+++...          .+   .+.+.+++.+..+++...   
T Consensus       486 ~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~  564 (960)
T 1wa5_C          486 RNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP  564 (960)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred             HhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence            9988654 568889999999999999999999999999876421          22   245566666667766531   


Q ss_pred             h--HHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHh----cC-CChHHHHHHHHHHHHHHHhhChhh---hHHHHHH
Q 007842          372 P--DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA----ED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGA  439 (587)
Q Consensus       372 ~--~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~----~~-~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~  439 (587)
                      .  .....+.++++.++...+.+  .+...+++.+...+    ++ .+...+..++++++.++...+++.   +.+.+.|
T Consensus       565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p  644 (960)
T 1wa5_C          565 EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMP  644 (960)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            1  12346677777777665532  12234444444332    33 466788788999999988755443   4567888


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHH--hhccCCchhHHHHHHHHHHHhhcccChHHH-Hhh
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVL--EMINNPHYLYRMTILRAISLLAPVMGSEIT-CSR  514 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~--~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~-~~~  514 (587)
                      .+...+..........+...++.+.... ..  .....++|.+.  ..+..+.  .-...+.++..+....+.... ...
T Consensus       645 ~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~  721 (960)
T 1wa5_C          645 TFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPDLVP  721 (960)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSCSHH
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHHHHH
Confidence            8888887766677888888888887654 11  12245666666  5444432  223444555554432221100 133


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhc-CCCCccHHHHHH
Q 007842          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFAT  574 (587)
Q Consensus       515 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~d~~Vr~~a~  574 (587)
                      ++..+.+++.++..  +..++..++.++..++..   .+...+++.+...+ .+.....+....
T Consensus       722 ~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l  783 (960)
T 1wa5_C          722 VLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLT  783 (960)
T ss_dssp             HHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHH
Confidence            45555555555543  478888888888877755   34555666665543 333344543333

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.75  E-value=6.5e-16  Score=159.09  Aligned_cols=471  Identities=10%  Similarity=0.042  Sum_probs=215.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~   89 (587)
                      +...++.+.|++...|..+.-++..++.. .++. .--++..+.. ..+.++-+|..+..+++.+.    .++....+.|
T Consensus        76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~e~-~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~  149 (621)
T 2vgl_A           76 HMEAVNLLSSNRYTEKQIGYLFISVLVNS-NSEL-IRLINNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAG  149 (621)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CHHH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccC-CcHH-HHHHHHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHH
Confidence            44445555565555555444444332210 1111 1112233322 33445555555555555552    2455556666


Q ss_pred             HHhhhh--cchhhHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH---HHHH
Q 007842           90 PLETLC--TVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTE  163 (587)
Q Consensus        90 ~l~~l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~  163 (587)
                      .+.+.+  .|+++.||+.|+.++.++.+. .++.+. ..+.+.+..+..|.+..++..|+.++..+...-+..   ....
T Consensus       150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~  228 (621)
T 2vgl_A          150 EIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSL  228 (621)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            666666  666666666666666666653 333222 145566666666555566666666655554432211   2223


Q ss_pred             HHHHHHHhcCCC-------------ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhh---C---------C--ch
Q 007842          164 LRSIYTQLCQDD-------------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---D---------D--QD  216 (587)
Q Consensus       164 l~~~l~~l~~d~-------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---d---------~--~~  216 (587)
                      ++..+..++.+.             +++.+..+.+.++.+...- ++.....+.+.+..+++   +         .  ..
T Consensus       229 ~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~  307 (621)
T 2vgl_A          229 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN  307 (621)
T ss_dssp             HHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence            333333332211             4566666665555544210 11222222232222221   1         0  11


Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHH
Q 007842          217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAE  295 (587)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~  295 (587)
                      .|...++.++..+.   +.......+...+..++.++++.+|..++..+..++...+.........+.+..++. |++..
T Consensus       308 aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~  384 (621)
T 2vgl_A          308 AVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVS  384 (621)
T ss_dssp             HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHh
Confidence            44444444444442   122233445555666666666677777777766665432211111233445555555 66666


Q ss_pred             HHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHH
Q 007842          296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  375 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  375 (587)
                      +|..++..+..++..   . ....++..+...+.+.+...|..++.+++.++..+...  .+..+..+.+++.+....+.
T Consensus       385 Ir~~aL~lL~~l~~~---~-Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~  458 (621)
T 2vgl_A          385 VRQRAVDLLYAMCDR---S-NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVS  458 (621)
T ss_dssp             HHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHcCh---h-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccch
Confidence            776666666655432   2 22445555555555566666666666666665544321  12334444444443333333


Q ss_pred             HHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhChhh-h-HHHHHHHHHHhcCCCchH
Q 007842          376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQWLQDKVYS  451 (587)
Q Consensus       376 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~~~~-~-~~~l~~~l~~~l~d~~~~  451 (587)
                      ..++..+..+.....  ......+..+.+.+.++..  .+-..++..+|..+..+.... . ...++..+...+.+.+..
T Consensus       459 ~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~  536 (621)
T 2vgl_A          459 EEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVP  536 (621)
T ss_dssp             SHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHH
Confidence            333333333332211  1112333444444554432  122223355555444332110 0 112334444455566666


Q ss_pred             HHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHh
Q 007842          452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLL  502 (587)
Q Consensus       452 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l  502 (587)
                      ||..++.++.++....+.  ..+.+...+.....  |.+..+|..|.....-+
T Consensus       537 v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll  587 (621)
T 2vgl_A          537 TRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS  587 (621)
T ss_dssp             HHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            666666666666543321  11112111211222  55566666665554443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.72  E-value=1.2e-13  Score=152.05  Aligned_cols=564  Identities=9%  Similarity=0.035  Sum_probs=326.1

Q ss_pred             cHHHHHHHhcCc------cHHHHHHHhhcHHHHHHhhCh-----------H---hhhhhhhhhhhhccC--Cc-------
Q 007842           10 PIAVLIDELKND------DIQLRLNSIRRLSTIARALGE-----------E---RTRKELIPFLSENND--DD-------   60 (587)
Q Consensus        10 ~~~~l~~~l~s~------~~~~R~~a~~~l~~~~~~~~~-----------~---~~~~~l~p~l~~~~~--~~-------   60 (587)
                      .+..+++.++++      ++..+..++..+..++..+..           +   ...+.+++++.+.+.  .+       
T Consensus       123 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~  202 (971)
T 2x1g_F          123 AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEA  202 (971)
T ss_dssp             ---HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence            356777777765      667788888888877642210           0   111244454544221  11       


Q ss_pred             HHHHHHHHHHhcccccc--CCCcchHhhhHHHHhhh----h-----------cchhhHHHHHHHHHHHHHHhhcChh---
Q 007842           61 DEVLLAMAEELGVFIPY--VGGVEHAHVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMRES---  120 (587)
Q Consensus        61 ~~v~~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~l----~-----------~~~~~~vr~~a~~~l~~l~~~~~~~---  120 (587)
                      .+++..+.++++.++.+  ++.. ....+++.+..+    +           .++++.+|+.|+.++..+...-.++   
T Consensus       203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~  281 (971)
T 2x1g_F          203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP  281 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred             hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence            16777778888765542  2222 344566655442    0           1367899999999999998742211   


Q ss_pred             hHHhhHHHHHHHHh-------cCCCC---cchhhHHhhhHhhcCCC-----------C---hHHHHHHHHHHHHhcCC--
Q 007842          121 DLVDWYIPLVKRLA-------AGEWF---TARVSACGLFHIAYPSA-----------P---DILKTELRSIYTQLCQD--  174 (587)
Q Consensus       121 ~~~~~l~~~l~~l~-------~~~~~---~~r~~a~~~l~~~~~~~-----------~---~~~~~~l~~~l~~l~~d--  174 (587)
                      .....++|.+..+.       .+++.   ......+.++..+....           .   +.....+++.+..+...  
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~  361 (971)
T 2x1g_F          282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG  361 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence            11222333332211       22221   33444455554433111           1   12344566666665533  


Q ss_pred             ---CChHHHHHHHHhHHHHHHhh-c------cch-------hhhHHHHHHHHhh---hCC-----c-------hhHHHHH
Q 007842          175 ---DMPMVRRSAASNLGKFAATV-E------PAH-------LKTDIMSIFEDLT---QDD-----Q-------DSVRLLA  222 (587)
Q Consensus       175 ---~~~~vr~~~~~~l~~l~~~~-~------~~~-------~~~~l~~~l~~l~---~d~-----~-------~~vr~~a  222 (587)
                         .+..|+..++..+..++... .      .+.       +...+++.+...+   .|+     +       ...|..+
T Consensus       362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~  441 (971)
T 2x1g_F          362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDI  441 (971)
T ss_dssp             CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHH
Confidence               46788888888888777632 1      111       1122223222222   111     0       1467888


Q ss_pred             HHHHHHHhhhcChhhhhhchHHHHHHhccC-----CcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc-CCChH
Q 007842          223 VEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL-RDNEA  294 (587)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l-~d~~~  294 (587)
                      ...+..++...+ +...+.+.+.+...++.     .+|+.|.+++.+++.++..+....  ....+++.+..+. .|.++
T Consensus       442 ~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~  520 (971)
T 2x1g_F          442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNV  520 (971)
T ss_dssp             HHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCH
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCH
Confidence            888888888776 33556666666665543     789999999999999987655432  1123455444443 25689


Q ss_pred             HHHHHHHHhHHHHHhhhCHH-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcC--
Q 007842          295 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD--  369 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--  369 (587)
                      .||..++.+++.+++.+... .+.+.+++.+...+ |  +.|+..++.++..+++.++..  .+.+.++..+..++..  
T Consensus       521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~  597 (971)
T 2x1g_F          521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR  597 (971)
T ss_dssp             HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence            99999999999999887643 45677888888777 4  789999999999998766543  2445566666666766  


Q ss_pred             CChHHHHHHHHhhhhhhhhhchhh---HHhh----HHHHHHHHhcCC--ChHHHHHHHHHHHHH---HHhhChh------
Q 007842          370 EFPDVRLNIISKLDQVNQVIGIDL---LSQS----LLPAIVELAEDR--HWRVRLAIIEYIPLL---ASQLGVG------  431 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~---~~~~----~l~~l~~~~~~~--~~~vR~~~~~~l~~l---~~~~~~~------  431 (587)
                      -....+..+.++++.++..++.+.   +...    ++..+....+..  +...+...+..++.+   ...++..      
T Consensus       598 ~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~  677 (971)
T 2x1g_F          598 MKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT  677 (971)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence            357899999999999987665221   1122    233333333333  333444444444444   3433321      


Q ss_pred             ---------hhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHHHH
Q 007842          432 ---------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRA  498 (587)
Q Consensus       432 ---------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~~~  498 (587)
                               .+.+.++|.+...+.+  .+..|.+.++.+++.++..+|.++  +.+.+++.+...++....   ..++..
T Consensus       678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l  754 (971)
T 2x1g_F          678 DQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEI  754 (971)
T ss_dssp             ------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHH
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHH
Confidence                     1234567777766643  367899999999999998887653  345556666555554332   358888


Q ss_pred             HHHhhcccChHH--------HHhhHHHHHHhhcCC-------CChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHH
Q 007842          499 ISLLAPVMGSEI--------TCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCL  558 (587)
Q Consensus       499 l~~l~~~~~~~~--------~~~~il~~l~~~l~d-------~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l  558 (587)
                      ++.+...+|.+.        +...+...+..++..       ..++++......+..+..+.+...+     ...+++..
T Consensus       755 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~  834 (971)
T 2x1g_F          755 SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYA  834 (971)
T ss_dssp             HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHH
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHH
Confidence            888888777631        122223333333333       3788999999999988876554332     35555555


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHH
Q 007842          559 VELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       559 ~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      ...+.-+++.....+...+..+-
T Consensus       835 ~~~l~~~~~~~~~s~~~fl~~~i  857 (971)
T 2x1g_F          835 QRGMTLPESGAIRNSIQFLTHFV  857 (971)
T ss_dssp             HHHHTSSCSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHH
Confidence            55445566666666666665543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.71  E-value=1.3e-13  Score=151.78  Aligned_cols=535  Identities=11%  Similarity=0.066  Sum_probs=320.5

Q ss_pred             CccHHHHHHHhhcHHHHHHh----hCh---HhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHh
Q 007842           20 NDDIQLRLNSIRRLSTIARA----LGE---ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (587)
Q Consensus        20 s~~~~~R~~a~~~l~~~~~~----~~~---~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~   92 (587)
                      +.+..+|..|+..+....+.    +.+   +..++.+++.+.+...+...+|..++.++..++..-..  .++.+++.+.
T Consensus        51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~  128 (971)
T 2x1g_F           51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVI  128 (971)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHH
T ss_pred             CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHH
Confidence            56889999999999865432    222   23355667777654344578999999999887764332  4666777766


Q ss_pred             hhhcch------hhHHHHHHHHHHHHHHhhcCh-----------hhH---HhhHHHHHHHHhcCC-CC-------cchhh
Q 007842           93 TLCTVE------ETCVRDKAVESLCRIGSQMRE-----------SDL---VDWYIPLVKRLAAGE-WF-------TARVS  144 (587)
Q Consensus        93 ~l~~~~------~~~vr~~a~~~l~~l~~~~~~-----------~~~---~~~l~~~l~~l~~~~-~~-------~~r~~  144 (587)
                      ..++++      ++..+..++..|..+++.+..           +.+   ...+++++..+..+. ..       ..+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~  208 (971)
T 2x1g_F          129 NTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNR  208 (971)
T ss_dssp             HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred             HHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHH
Confidence            666554      677889999999988864210           111   223455554444321 11       45666


Q ss_pred             HHhhhHhhcC--CCChHHHHHHHHHHHHhc----------------CCCChHHHHHHHHhHHHHHHhhccc---hhhhHH
Q 007842          145 ACGLFHIAYP--SAPDILKTELRSIYTQLC----------------QDDMPMVRRSAASNLGKFAATVEPA---HLKTDI  203 (587)
Q Consensus       145 a~~~l~~~~~--~~~~~~~~~l~~~l~~l~----------------~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l  203 (587)
                      ++..+.....  ..+......+++.+.. +                .++++.+|..+++++..+...-..+   .....+
T Consensus       209 al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l  287 (971)
T 2x1g_F          209 AVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL  287 (971)
T ss_dssp             HHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred             HHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence            7666655433  3333345566776655 3                1246889999999999998752211   122223


Q ss_pred             HHHHHH----h---hhCCc---hhHHHHHHHHHHHHhhhcCh-------------hhhhhchHHHHHHhccC-----CcH
Q 007842          204 MSIFED----L---TQDDQ---DSVRLLAVEGCAALGKLLEP-------------QDCVAHILPVIVNFSQD-----KSW  255 (587)
Q Consensus       204 ~~~l~~----l---~~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~l~~~l~~~~~d-----~~~  255 (587)
                      +|.+..    +   ..+++   +......++.+..+++....             ......+++.+..+...     .++
T Consensus       288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~  367 (971)
T 2x1g_F          288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE  367 (971)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred             HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence            333222    1   13333   25666667777766643211             11233455555555432     467


Q ss_pred             HHHHHHHHHHHHHHHHh-C-----C-Cccc-------cchHHHHHHhcC---CC-----h-------HHHHHHHHHhHHH
Q 007842          256 RVRYMVANQLYELCEAV-G-----P-EPTR-------MDLVPAYVRLLR---DN-----E-------AEVRIAAAGKVTK  306 (587)
Q Consensus       256 ~vR~~a~~~l~~~~~~~-~-----~-~~~~-------~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~l~~  306 (587)
                      .|+..++..+..++... .     + ....       ..+++.+...+.   |.     +       ...|.++...+..
T Consensus       368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~  447 (971)
T 2x1g_F          368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY  447 (971)
T ss_dssp             TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence            78899999888887632 1     1 1111       123344433331   11     1       2478888888888


Q ss_pred             HHhhhCHHHHHHhHhHHHHHhccC-----CcHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhh-cCCChHHHHHH
Q 007842          307 FCRILNPELAIQHILPCVKELSSD-----SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLL-KDEFPDVRLNI  378 (587)
Q Consensus       307 l~~~~~~~~~~~~i~~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~a  378 (587)
                      ++...+ +...+.+++.+...+..     .+|+.|.+++.+++.+++.+...  ...+.+++.+..+. .|.++.||..+
T Consensus       448 ~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a  526 (971)
T 2x1g_F          448 CYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA  526 (971)
T ss_dssp             HHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred             HHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence            888777 34456677777666544     78999999999999999877542  24455666444443 25689999999


Q ss_pred             HHhhhhhhhhhchh-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hhHHHHHHHHHHhcCC--CchHHH
Q 007842          379 ISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQD--KVYSIR  453 (587)
Q Consensus       379 ~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~~~~vr  453 (587)
                      +.+++.+...++.+ .+.+.++|.+...+ +  ++++..++.++..+++..+..  .+.+.++..+...+..  .+...+
T Consensus       527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~  603 (971)
T 2x1g_F          527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS  603 (971)
T ss_dssp             HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence            99999999887633 44567788887777 3  789999999999998776432  1234455555566665  467899


Q ss_pred             HHHHHHHHHHHHHhChHH---HhhhhHHHHH----hhccCC--chhHHHHHH---HHHHHhhcccCh-------------
Q 007842          454 DAAANNLKRLAEEFGPEW---AMQHITPQVL----EMINNP--HYLYRMTIL---RAISLLAPVMGS-------------  508 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~---~~~~l~~~l~----~~l~d~--~~~~R~~a~---~~l~~l~~~~~~-------------  508 (587)
                      ..+.++++.++...+.+.   +...+++.+.    ...+.+  +...+...+   ..++.+...++.             
T Consensus       604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~  683 (971)
T 2x1g_F          604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ  683 (971)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence            999999999998665221   1233333333    333332  332344444   444444443332             


Q ss_pred             --HHHHhhHHHHHHhhcCC--CChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHh
Q 007842          509 --EITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVEL  561 (587)
Q Consensus       509 --~~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l  561 (587)
                        ..+...++|.+...+.+  .+..+...++.+++.++..++.+  .+...+++.+...
T Consensus       684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~  742 (971)
T 2x1g_F          684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS  742 (971)
T ss_dssp             CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH
Confidence              12456788887777643  36789999999999988877654  3445555665543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.71  E-value=2e-12  Score=142.48  Aligned_cols=555  Identities=12%  Similarity=0.072  Sum_probs=326.2

Q ss_pred             ccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCC------cHHHHHHHHHHhcccc----cc-C--------CC-
Q 007842           21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD------DDEVLLAMAEELGVFI----PY-V--------GG-   80 (587)
Q Consensus        21 ~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~------~~~v~~~~~~~l~~l~----~~-~--------~~-   80 (587)
                      +++.+|......+..+++...|+. |.++++.+.+....      ++..+..+...+..+.    .. .        .. 
T Consensus       115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~  193 (963)
T 2x19_B          115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS  193 (963)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence            468899999999999998877654 88888888775443      3222222222222111    10 0        00 


Q ss_pred             -cchHhhhHHHHhhhhcchh--hHHHHHHHHHHHHHHhhcChhh-HHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842           81 -VEHAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRESD-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (587)
Q Consensus        81 -~~~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~  156 (587)
                       ..+.+.+++++..++.+.+  ..++..+++++..... ++... ....+++.+.+...  ....|..++..+..+....
T Consensus       194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~  270 (963)
T 2x19_B          194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP  270 (963)
T ss_dssp             SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence             1245567777777665432  2488888888876554 33211 12456676666554  3456778888887776643


Q ss_pred             C-h---HHHHHHHHHHHHh-------cCCCChHHHHHHHHhHHHHHHhhcc--------chhhhHHHHHHHHhhhC----
Q 007842          157 P-D---ILKTELRSIYTQL-------CQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFEDLTQD----  213 (587)
Q Consensus       157 ~-~---~~~~~l~~~l~~l-------~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~l~~d----  213 (587)
                      . +   .....+++.+...       ..+.+.+.....++.+..++.....        ......+++.+.....+    
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  350 (963)
T 2x19_B          271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY  350 (963)
T ss_dssp             TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred             ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence            2 2   2333343333321       2334456666677777776643211        11223445555554443    


Q ss_pred             -CchhHHHHHHHHHHHHhhhcC-------h------hhhhhchHHHHHHhccCC--------------cH-HHHHHHHHH
Q 007842          214 -DQDSVRLLAVEGCAALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ  264 (587)
Q Consensus       214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vR~~a~~~  264 (587)
                       .++.++..++..+..+++...       +      ......+++.+...+.-+              ++ ..|..+...
T Consensus       351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~  430 (963)
T 2x19_B          351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT  430 (963)
T ss_dssp             TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence             355677777777777766321       1      011222333333322110              11 347777888


Q ss_pred             HHHHHHHhCCCccccchHHHHHHhc----CCChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHH
Q 007842          265 LYELCEAVGPEPTRMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSA  338 (587)
Q Consensus       265 l~~~~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~  338 (587)
                      +..++...+.. ....+.+.+...+    .+.+|..|.+++.+++.+++.+...  .+.+.+++.+..+. ++++.+|..
T Consensus       431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~  508 (963)
T 2x19_B          431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT  508 (963)
T ss_dssp             HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred             HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence            88877766532 2234555555555    6678999999999999999877542  34456666555444 358889999


Q ss_pred             HHHHHHccccccch-hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHHHhcC--CChHH
Q 007842          339 LASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV  413 (587)
Q Consensus       339 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~--~~~~v  413 (587)
                      ++.+++.++..+.. ..+.+.+++.+...+.+  +.|+..|+.++..+++..+..  .+.+.++..+..++..  -+...
T Consensus       509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~  586 (963)
T 2x19_B          509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ  586 (963)
T ss_dssp             HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence            99999999887653 25677888999988866  899999999999999766533  2335555666666654  35688


Q ss_pred             HHHHHHHHHHHHHhhChhhhH---HHHHHHHHHhc----CC-CchHHHH---HHHHHHHHHHHHhChH------------
Q 007842          414 RLAIIEYIPLLASQLGVGFFD---DKLGALCMQWL----QD-KVYSIRD---AAANNLKRLAEEFGPE------------  470 (587)
Q Consensus       414 R~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l----~d-~~~~vr~---~a~~~l~~l~~~~~~~------------  470 (587)
                      |..++++++.++...+.+.+.   +.+++.+...+    .. .+.+.+.   ..+.+++.+.+.++..            
T Consensus       587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~  666 (963)
T 2x19_B          587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR  666 (963)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence            999999999998776533322   33343333332    22 2344443   5566677777765520            


Q ss_pred             ------------HHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHhhcccChHH--------------------------
Q 007842          471 ------------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEI--------------------------  510 (587)
Q Consensus       471 ------------~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l~~~~~~~~--------------------------  510 (587)
                                  .+.+.++|.+..++.  ..+..+++.++.+++.+...+|...                          
T Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l  746 (963)
T 2x19_B          667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL  746 (963)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHH
Confidence                        123455555554432  1245677777777776554333110                          


Q ss_pred             ----------------H----HhhHHHHHHhhcC-C--CChhHHHHHHHHHHHhhhhhchHHH-----HhhHHHHHHHhc
Q 007842          511 ----------------T----CSRLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCLVELT  562 (587)
Q Consensus       511 ----------------~----~~~il~~l~~~l~-d--~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~  562 (587)
                                      .    ...++..+...++ +  ..+.+|......+..+........+     ...+++.+...+
T Consensus       747 ~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l  826 (963)
T 2x19_B          747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL  826 (963)
T ss_dssp             HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence                            0    0111111111111 2  3577888888888877766544321     455666767767


Q ss_pred             CCCCccHHHHHHHHHHHHHHh
Q 007842          563 EDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       563 ~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      ...++++...+...+..+.+.
T Consensus       827 ~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          827 KFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            788888888888887776654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.70  E-value=1.5e-12  Score=143.49  Aligned_cols=565  Identities=12%  Similarity=0.081  Sum_probs=338.6

Q ss_pred             CcccHHHHHHH-hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCc
Q 007842            7 PLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV   81 (587)
Q Consensus         7 ~~~~~~~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~   81 (587)
                      ++..+..+++. ..+.|++.|.+|-..|..+-..  | ..+..+..++..  +.+.++|..++..+.+.+..    +...
T Consensus        22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~   96 (963)
T 2x19_B           22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTD   96 (963)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence            33446677777 4468999999999888775432  1 222233333322  34678998888888765432    2211


Q ss_pred             c---hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC-----CCCcchhhHHhhhHhhc
Q 007842           82 E---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLFHIAY  153 (587)
Q Consensus        82 ~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~  153 (587)
                      +   ....+++.+.+.. +..+.+|.....++..++....++. +..+++.+.....+     ++...+..++.++..+.
T Consensus        97 ~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~  174 (963)
T 2x19_B           97 QYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP  174 (963)
T ss_dssp             GHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence            1   1223444443322 2358999999999999998866655 66777777777654     12224445555554433


Q ss_pred             C----C-C--------C---hHHHHHHHHHHHHhcCCCC--hHHHHHHHHhHHHHHHhhccch-hhhHHHHHHHHhhhCC
Q 007842          154 P----S-A--------P---DILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDD  214 (587)
Q Consensus       154 ~----~-~--------~---~~~~~~l~~~l~~l~~d~~--~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~  214 (587)
                      +    . .        .   ......+++++..++.+.+  ..++..+++++...+. ++... ....+++.+...+.  
T Consensus       175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--  251 (963)
T 2x19_B          175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--  251 (963)
T ss_dssp             HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--
Confidence            1    1 0        0   1245677777877776543  2488888888876665 33211 22556776666664  


Q ss_pred             chhHHHHHHHHHHHHhhhcChh---hhhhchHHHHHH-------hccCCcHHHHHHHHHHHHHHHHHhCCC--------c
Q 007842          215 QDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE--------P  276 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~  276 (587)
                      ++.+|..+++++..+.....+.   .....+++.+..       ...+.+.......++.+..++......        .
T Consensus       252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~  331 (963)
T 2x19_B          252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ  331 (963)
T ss_dssp             STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence            4678999999999888643221   111222232221       122233344455567776665432110        1


Q ss_pred             cccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHhhhC-------H------HHHHHhHhHHHHHhccCC-------
Q 007842          277 TRMDLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------P------ELAIQHILPCVKELSSDS-------  331 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~i~~~l~~~~~d~-------  331 (587)
                      ....+++.+.....+     .+++++..++..+..+++...       +      ..+...+++.+...+..+       
T Consensus       332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~  411 (963)
T 2x19_B          332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF  411 (963)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence            112345555555553     355667777766666665221       1      122233444443333211       


Q ss_pred             -------cH-HHHHHHHHHHHccccccchhHHHHhHHHHHHHhh----cCCChHHHHHHHHhhhhhhhhhchh--hHHhh
Q 007842          332 -------SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGID--LLSQS  397 (587)
Q Consensus       332 -------~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~  397 (587)
                             ++ ..|..+...+..++...+. ...+.+.+.+...+    .+.+...+.+++.+++.+++....+  .+...
T Consensus       412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~  490 (963)
T 2x19_B          412 WSSDEKEQFRIYRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG  490 (963)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence                   11 3477777788777766664 34566677777776    5667889999999999998776532  22334


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh-hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--Hhh
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQ  474 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~  474 (587)
                      +++.+..+ .++++.+|..++..++.+++.+.. ..+.+.+++.++..+.+  +.|+..|+.++..+++..+...  +.+
T Consensus       491 l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~  567 (963)
T 2x19_B          491 LIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA  567 (963)
T ss_dssp             HHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred             HHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            44433332 446889999999999999886642 23455677888888876  7899999999999998765432  345


Q ss_pred             hhHHHHHhhccC--CchhHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhc----CC-CChhHHH---HHHHHHHHh
Q 007842          475 HITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINAS----KD-RVPNIKF---NVAKVLQSL  541 (587)
Q Consensus       475 ~l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l----~d-~~~~vR~---~~~~~l~~l  541 (587)
                      .++..+..++..  -+...|...+++++.++...+.+.   +...+++.+...+    +. .++..|.   ..+.+++.+
T Consensus       568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i  647 (963)
T 2x19_B          568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNL  647 (963)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            666666666654  356899999999999998776322   3455555554433    22 2455554   455556565


Q ss_pred             hhhhch------------------------HHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHhhc
Q 007842          542 IPIVDQ------------------------SMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       542 ~~~~~~------------------------~~~~~~i~~~l~~l~~--d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      +..++.                        ..+...+.|.+.++++  -.+.++...++.+++.+...+|
T Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~  717 (963)
T 2x19_B          648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL  717 (963)
T ss_dssp             HHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence            555431                        1244566777666432  2356899999999998876655

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.70  E-value=9.2e-16  Score=135.29  Aligned_cols=188  Identities=15%  Similarity=0.221  Sum_probs=154.7

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHH
Q 007842          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  436 (587)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~  436 (587)
                      ....+.+++.+++.++.+|..++.+|+.+..        +..+|.+.+.+.|+++.+|..++..++.+..    .    .
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E----R   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----G
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H----H
Confidence            3556788889999999999999999987654        3457778888899999999999988877632    1    2


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH
Q 007842          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  516 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il  516 (587)
                      .++.+...+.|+++.||..|+.+|+.+..        ...++.+...+.|+++.+|..++.+++.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45677788899999999999999987632        3467888888999999999999999999864        4577


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       517 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                      +.+..+++|+++.||..++.+|+.+..        ...++.|..+++|+++.||..|..+|+++.+.+
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~  200 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI  200 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence            889999999999999999999999843        357888888889999999999999999987654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=1.8e-15  Score=137.49  Aligned_cols=185  Identities=16%  Similarity=0.215  Sum_probs=145.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHH-
Q 007842          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEW-  471 (587)
Q Consensus       397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~-  471 (587)
                      .+-|.+.+.+.+++|+.|..++..+..+....+   ...+ ..+.+.+...+. |++..||..|+.+++.++..+|..+ 
T Consensus        15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344456677788899999998888888877632   1223 457788888884 8889999999999999988877653 


Q ss_pred             -HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842          472 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       472 -~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--  548 (587)
                       +...++|.+++.+.|++..+|.++..++..+....+.    ..++|.+...++++++.+|..++.+++.+....+++  
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence             4567888888888888888999999999988876653    567888888888888999999999998877665432  


Q ss_pred             --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          549 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       549 --~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                        .+...++|.+..+++|++++||..|..+++.++..+|.
T Consensus       170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence              45567888888888999999999999999998887764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.68  E-value=1.3e-15  Score=135.44  Aligned_cols=186  Identities=16%  Similarity=0.223  Sum_probs=138.4

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHH
Q 007842          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  437 (587)
                      ..++.+...++|+++.+|..++..|+.+..        +..+|.+.+.+.|+++.+|..++..++.+..        +..
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA   82 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence            446777777888888888888888877653        3456777777888888888888887776532        123


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHH
Q 007842          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP  517 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~  517 (587)
                      ++.+...+.|+++.||..|+.+|+.+..        ...++.+.+++.|+++.+|..++.+++.+..        +..++
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  146 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  146 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence            5667777888888888888888876632        3457777788888888888888888888754        35677


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       518 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      .+..+++|+++.||..++.+|+.+..        ....+.|..+++|+++.||..|..+|+.+...
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            78888888888888888888888753        35677777777888888888888888877654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=2e-15  Score=137.09  Aligned_cols=190  Identities=16%  Similarity=0.134  Sum_probs=121.6

Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                      ...+.+.+.+.+.++|.+|..|..++..+..++...+.  ......+++.+...+. |.+..||..++.+++.++..++.
T Consensus        11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~   90 (242)
T 2qk2_A           11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK   90 (242)
T ss_dssp             CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence            34455555666777888899999999999888876432  1123467888888884 88888888888888888876665


Q ss_pred             H--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch
Q 007842          314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (587)
Q Consensus       314 ~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  391 (587)
                      .  .+.+.++|.+...+.|++..||.++..++..+....+    .+.++|.+...+++.++.+|..++..++.+....++
T Consensus        91 ~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           91 RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            3  4456677777777777777777777777776665433    234555555566666666666666666665444332


Q ss_pred             h----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 007842          392 D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (587)
Q Consensus       392 ~----~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~  430 (587)
                      +    .+.+.++|.+..+++|+++.+|..+.++++.++..+|.
T Consensus       167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence            1    12244555555555555555555555555555555554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.66  E-value=4.4e-15  Score=132.02  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=114.6

Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      ..++.+...+.|+++.+|..++..++.+..        +..+|.+...+.|+++.+|..++.+|+.+..        +..
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA   82 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence            345556666666666666666666665542        2345556666666666666666666666542        234


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      +|.+...+.|+++.+|..++..++.+..    .    ..++.+..++.|+++.||..|+.+|+.+..        ...++
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  146 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  146 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence            5556666666677777776666665421    1    134555666677777777777777766521        23566


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+..+++|+++.+|..++.+++.+..        +...+.+..+++|+++.||..+..+|..+....
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            66666777777777777777777643        455666666677777777777777777766543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.9e-13  Score=136.35  Aligned_cols=478  Identities=9%  Similarity=0.063  Sum_probs=304.7

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh----cCCCCcchhhHHhhhHhhcCCCChH-----HHHHHHH
Q 007842           96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDI-----LKTELRS  166 (587)
Q Consensus        96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~  166 (587)
                      ..+.+.||-.++-.+.++.+..+ +.+.+.+..++..+.    .+-.......++..+..++|-.+.-     ..+.+.+
T Consensus       180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~  258 (778)
T 3opb_A          180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSK  258 (778)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred             ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence            34567889888888888776655 556777777777555    2212344556777778888877542     1234456


Q ss_pred             HHHHhc-CCCChHHHHHHHHhHHHHHHhhcc-chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hhhhhchH
Q 007842          167 IYTQLC-QDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHIL  243 (587)
Q Consensus       167 ~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~  243 (587)
                      .+.... ...+..+..++.+.+...+..-.- +.+.+...+.+..++++  +.+|..|+-+|..+...-+. +.....+.
T Consensus       259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La  336 (778)
T 3opb_A          259 LFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS  336 (778)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence            666544 445667777777777665543111 23445567888888865  46788888888888765432 22234578


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhC--CCc-cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQH  319 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      +.+.+.+.+++...|..|++.|+.+...-.  ... ....+++.++.++++ .+..+-.+++..+..+....+.......
T Consensus       337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~  416 (778)
T 3opb_A          337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX  416 (778)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence            888888877666669999999987753100  001 123468888888885 5677888888888888875432100000


Q ss_pred             HhHHHHHhccCC--------cHHHHHHHHHH--HHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh
Q 007842          320 ILPCVKELSSDS--------SQHVRSALASV--IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       320 i~~~l~~~~~d~--------~~~vr~~a~~~--l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (587)
                      =+..+.++.+..        +..-...-...  ...+        ....++|.+..++++.++.+|..++++|..++..-
T Consensus       417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l--------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~  488 (778)
T 3opb_A          417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI--------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK  488 (778)
T ss_dssp             ------------------CCTHHHHHHHHHHHHHHHT--------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred             hhhhhhhhccccCcccCcccccccchHHHHHHHHHHH--------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence            111222222110        10000000000  0011        11246888999999999999999999999998653


Q ss_pred             chh--hHHhhHHHHHHHHhcCCChH---HHHHHHHHHHHHHHhhChhhhH-----HHHHHHHHHhcCC-Cch--------
Q 007842          390 GID--LLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY--------  450 (587)
Q Consensus       390 ~~~--~~~~~~l~~l~~~~~~~~~~---vR~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~--------  450 (587)
                      ...  ...+..+|.+..++.+....   .|..++.++..+.-...+....     ...+|.+..++.. +..        
T Consensus       489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~  568 (778)
T 3opb_A          489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND  568 (778)
T ss_dssp             GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred             HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence            221  23356788888887765433   8999999999987543322210     1467778888872 221        


Q ss_pred             -----HHHHHHHHHHHHHHHHhCh---H----HHh-hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHH--
Q 007842          451 -----SIRDAAANNLKRLAEEFGP---E----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC--  512 (587)
Q Consensus       451 -----~vr~~a~~~l~~l~~~~~~---~----~~~-~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~--  512 (587)
                           --+..|+.+|.+++..-+.   +    .+. ...+|.+.+++.+.+..+|.+|++++.+++..-..   +++.  
T Consensus       569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~  648 (778)
T 3opb_A          569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE  648 (778)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred             ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence                 2277899999999875421   1    233 25889999999999999999999999999863321   2210  


Q ss_pred             ----hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHH-hhHHHHHHHhcCC--CCccHHHHHHHHHHHHHH
Q 007842          513 ----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE-KTIRPCLVELTED--PDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       513 ----~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~d~~Vr~~a~~al~~l~~  582 (587)
                          ..-++.++.+++..+..+|.+|+.+|..+....+.   .... ...++.+..++.+  ++.++|.++..++..+.+
T Consensus       649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                11378899999999999999999999998643322   1222 2466677777777  899999999999999987


Q ss_pred             hh
Q 007842          583 VM  584 (587)
Q Consensus       583 ~~  584 (587)
                      +.
T Consensus       729 ~~  730 (778)
T 3opb_A          729 VI  730 (778)
T ss_dssp             TC
T ss_pred             hh
Confidence            54

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.64  E-value=1e-11  Score=134.24  Aligned_cols=523  Identities=12%  Similarity=0.088  Sum_probs=314.8

Q ss_pred             cHHHHHHHhhcHHHHHHhhChH-------hhhhhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHh
Q 007842           22 DIQLRLNSIRRLSTIARALGEE-------RTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (587)
Q Consensus        22 ~~~~R~~a~~~l~~~~~~~~~~-------~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~   92 (587)
                      +..+|..|+..+....+.++++       ..++.++.++....  .+..-+|..++.++..++.... +..++.+++.+.
T Consensus        56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~-p~~Wp~~i~~l~  134 (980)
T 3ibv_A           56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY-PSNWNDFFASLQ  134 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT-TTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC-cccCchHHHHHH
Confidence            7889999998888665555443       23446666666532  3455788888888877765322 244556666665


Q ss_pred             hhhcchhh-HHHHHHHHHHHHHHhhcCh-----------------h--------hHHhhHHHHHHHHhcCCCCcchhhHH
Q 007842           93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------S--------DLVDWYIPLVKRLAAGEWFTARVSAC  146 (587)
Q Consensus        93 ~l~~~~~~-~vr~~a~~~l~~l~~~~~~-----------------~--------~~~~~l~~~l~~l~~~~~~~~r~~a~  146 (587)
                      .++..++. ..-...++.|..+.+.+..                 +        .+.+.+..++...........+..++
T Consensus       135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L  214 (980)
T 3ibv_A          135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL  214 (980)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            55544333 3334445555544443311                 0        01222333333333323444556677


Q ss_pred             hhhHhhcCCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHH------HHHhhh-CCchh
Q 007842          147 GLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI------FEDLTQ-DDQDS  217 (587)
Q Consensus       147 ~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~------l~~l~~-d~~~~  217 (587)
                      ..++....-.+..  ....+++.+..++.+  +.+|..++++|..++..-.++.....++..      +..+.. +++.+
T Consensus       215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d  292 (980)
T 3ibv_A          215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN  292 (980)
T ss_dssp             HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred             HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence            7777777665544  336788888888876  799999999999998875442222222222      222222 34445


Q ss_pred             HHHHHHHHHHHHhhh------cC----h------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---C-Ccc
Q 007842          218 VRLLAVEGCAALGKL------LE----P------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---P-EPT  277 (587)
Q Consensus       218 vr~~a~~~l~~l~~~------~~----~------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~-~~~  277 (587)
                      +++..++.+..++..      .+    .      ......+++.+..+..++++.|-..+...+..+.....   . ...
T Consensus       293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~  372 (980)
T 3ibv_A          293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL  372 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence            555444444333322      11    0      02345688999999999989888888887777765432   1 001


Q ss_pred             cc-------chHHHHHHhcC-------CC----h-----HHHHHHHHHhHHHHHhhhCHHHHHH----hHhHHHHHhc--
Q 007842          278 RM-------DLVPAYVRLLR-------DN----E-----AEVRIAAAGKVTKFCRILNPELAIQ----HILPCVKELS--  328 (587)
Q Consensus       278 ~~-------~l~~~l~~~l~-------d~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~~~--  328 (587)
                      ..       .+++.+.+-+.       |.    +     .+.|+... .+......++++.+.+    .+.+.+.+.+  
T Consensus       373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~  451 (980)
T 3ibv_A          373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL  451 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence            11       23333333221       11    1     24666666 6666677778877666    5666665555  


Q ss_pred             -cCCcHHHHHHHHHHHHccccccchh--------HHHHhHHHHHHHhhc-----CCChHHHHHHHHhhhhhhhhhchh-h
Q 007842          329 -SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L  393 (587)
Q Consensus       329 -~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~  393 (587)
                       .+.+|+.+++++.+++.+++.+...        ...+.+++.+..+++     +..+.||..+++.+++..+.+..+ .
T Consensus       452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~  531 (980)
T 3ibv_A          452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA  531 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence             3567999999999999998876421        123456777777765     788999999999999999887643 3


Q ss_pred             HHhhHHHHHHH--HhcCCChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCC---C------------------
Q 007842          394 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---K------------------  448 (587)
Q Consensus       394 ~~~~~l~~l~~--~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---~------------------  448 (587)
                      +.+.+++.+..  .+.+++.++|..+..++..+++..+...  +.+.++..+..++.-   +                  
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~  611 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS  611 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred             hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence            34455555555  5567889999999999999998875422  223344444333431   0                  


Q ss_pred             chHHHHHHHHHHHHHHHHhCh--H---HHhhhhHHHH----HhhccCC----chhHH-HHHHHHHHHhhcccCh------
Q 007842          449 VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQV----LEMINNP----HYLYR-MTILRAISLLAPVMGS------  508 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~--~---~~~~~l~~~l----~~~l~d~----~~~~R-~~a~~~l~~l~~~~~~------  508 (587)
                      ..+-+....+++|.++...+.  +   .+.+.+++.+    ...+...    +...+ ...+.+++.+++.+..      
T Consensus       612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~  691 (980)
T 3ibv_A          612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV  691 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred             CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence            123466788888988877652  2   1223333332    2223221    11122 2567788888876532      


Q ss_pred             --HHHHhhHHHHHHhhcC--CCChhHHHHHHHHHHHhhhhhchH
Q 007842          509 --EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       509 --~~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                        ......+++.+...+.  ..+..||.++..++.+++..+|.+
T Consensus       692 p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~  735 (980)
T 3ibv_A          692 AWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD  735 (980)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh
Confidence              1234456666655554  457899999999999999998876

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.64  E-value=1.8e-14  Score=126.88  Aligned_cols=183  Identities=21%  Similarity=0.222  Sum_probs=86.3

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccc
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~  280 (587)
                      +...+.+..+++|+++.+|..++..|+.+..        +...+.+.+.+.|+++.+|..++..++.+.        ...
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHH
Confidence            3344444445555555555555555544332        123444444445555555555555554432        123


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHH
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      .++.+..++.|+++.||..++.+|+.+..        +..++.+..++.|+++.||..++.+++.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            44555555555555555555555544422        1234444444555555555555555554431        1234


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007842          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  423 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~  423 (587)
                      +.+..+++|.++.||..++.+|+.+..        +..++.+..+++|+++.+|..+.+.++.
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            444555555555555555555554421        2334444444445555555555444443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.63  E-value=9.4e-13  Score=131.73  Aligned_cols=344  Identities=15%  Similarity=0.155  Sum_probs=230.5

Q ss_pred             hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-
Q 007842          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  314 (587)
                      .+.-+|.+.+++..+++.++..|+.+|..++..-.   ........+|.++.++++.+..++..|+.+|..++..-+.+ 
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            34456777777777778888888888777764110   01122346788888888888888888888888887531121 


Q ss_pred             ---HHHHhHhHHHHHhccC-CcHHHHHHHHHHHHccccccc-hhHHHHhHHHHHHHhhc------------------CCC
Q 007842          315 ---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLK------------------DEF  371 (587)
Q Consensus       315 ---~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~------------------d~~  371 (587)
                         ......+|.+..++.+ .+..++..++.+|..++..-. +..+....+|.+.+++.                  ..+
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence               2223467777777775 567788888888888775321 22233345666666541                  124


Q ss_pred             hHHHHHHHHhhhhhhhhhc--hhhHH--hhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhh-------------
Q 007842          372 PDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL-------------  428 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~--~~~~~--~~~l~~l~~~~~------~~~~~vR~~~~~~l~~l~~~~-------------  428 (587)
                      .+|+..+..+|..++..-.  ...+.  ..+++.+..++.      +.+.+....++.++..++...             
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~  285 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA  285 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            6888888888888875321  11111  234445555443      345566676777666655331             


Q ss_pred             --------------Chhh-hHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCh---H---HH-hhhhHHHHHhhcc
Q 007842          429 --------------GVGF-FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---E---WA-MQHITPQVLEMIN  485 (587)
Q Consensus       429 --------------~~~~-~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~l~~~l~~~l~  485 (587)
                                    |.+. +....++.++.++. ..+..++++|+.+|..++..-+.   .   .+ ....+|.|.+++.
T Consensus       286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~  365 (584)
T 3l6x_A          286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT  365 (584)
T ss_dssp             ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred             cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence                          1111 22345677788875 45799999999999999742111   1   11 2456999999999


Q ss_pred             CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCC--------ChhHHHHHHHHHHHhhhhhch---HHHHhh
Q 007842          486 NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SMVEKT  553 (587)
Q Consensus       486 d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~~~~---~~~~~~  553 (587)
                      +++..++..++.+|++++..... ..+....+|.++.+|.+.        +..++..++.+|+++...-..   ......
T Consensus       366 s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g  445 (584)
T 3l6x_A          366 NEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ  445 (584)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            99999999999999999875443 334677899999999876        357899999999998754222   234467


Q ss_pred             HHHHHHHhcCCC--CccHHHHHHHHHHHHHH
Q 007842          554 IRPCLVELTEDP--DVDVRFFATQAIQSIDH  582 (587)
Q Consensus       554 i~~~l~~l~~d~--d~~Vr~~a~~al~~l~~  582 (587)
                      .+|.|..++.+.  .+.++..|+.+|..+..
T Consensus       446 ~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          446 GIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            889999988775  78899999999998864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.62  E-value=6.8e-12  Score=130.00  Aligned_cols=330  Identities=14%  Similarity=0.060  Sum_probs=226.4

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhcc---CCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh
Q 007842          217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE  293 (587)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~---d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~  293 (587)
                      ..+-.|..+++.|-..-.     ...+..+.+.+.   ..++.+|..|+.++|.+....+.     ..+..+...+.+.+
T Consensus       373 ~~k~sA~aSLGlIh~g~~-----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~  442 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNL-----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENS  442 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCT-----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhhhccCch-----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCcc
Confidence            346677777887754332     233555555554   56789999999999987654432     35566666565433


Q ss_pred             --------HHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHH
Q 007842          294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS  365 (587)
Q Consensus       294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  365 (587)
                              +.+|.+|+.+|+.+.-..+++    .+++.|...+.|.+..+|..++.+++.+.-.-|.....+.++..+  
T Consensus       443 ~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~--  516 (963)
T 4ady_A          443 GTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS--  516 (963)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH--
Confidence                    679999999999875544443    345666666666777788888888887744334444444444443  


Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                       ..+.+..+|..++.+|+.+.  +|.+...+.+   +..+..+.+|.+|..++.+++......|....   +-.++..+.
T Consensus       517 -~e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~  587 (963)
T 4ady_A          517 -QETQHGNITRGLAVGLALIN--YGRQELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAV  587 (963)
T ss_dssp             -HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHH
T ss_pred             -hccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhc
Confidence             35667899999999999763  3333222222   23345688999999998888765554554332   223444455


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC
Q 007842          446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  524 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~  524 (587)
                      .|.+..||.+|+.+|+.+.-  |.    +...+.++. +..+.++.+|..+..++|.+...-+.    ..++..|.++.+
T Consensus       588 ~d~~d~VRraAViaLGlI~~--g~----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~  657 (963)
T 4ady_A          588 SDSNDDVRRAAVIALGFVLL--RD----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTK  657 (963)
T ss_dssp             HCSCHHHHHHHHHHHHHHTS--SS----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHHHHHhhcc--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHcc
Confidence            78899999999999997752  22    235666666 45678999999999999999865554    467778889999


Q ss_pred             CCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 007842          525 DRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSID  581 (587)
Q Consensus       525 d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~d~~Vr~~a~~al~~l~  581 (587)
                      |++..||.+|+.+|+.+...-.+.  .....++..|.....|  .|+++|+.+.-|.|.+.
T Consensus       658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            999999999999999998653332  1234555555565544  67889999999999875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.61  E-value=9.5e-11  Score=121.57  Aligned_cols=272  Identities=13%  Similarity=0.034  Sum_probs=189.1

Q ss_pred             chHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCc--------HHHHHHHHHHHHcccc
Q 007842          280 DLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--------QHVRSALASVIMGMAP  348 (587)
Q Consensus       280 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~  348 (587)
                      ..+..+.+.+.   +.++.+|.+|+.+++.+....+.+     ++..|...+.+.+        +.+|..++-.|+.+.-
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~  466 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM  466 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence            35666666665   567899999999999988766653     2344444444333        7899999999988765


Q ss_pred             ccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 007842          349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (587)
Q Consensus       349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~  428 (587)
                      ..+.+    .+.+.+...+.+.+..++..++.+++.+.---|.+...+.++..+   ..+.+..+|..++..++.+.  +
T Consensus       467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~  537 (963)
T 4ady_A          467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--Y  537 (963)
T ss_dssp             TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--T
T ss_pred             CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--C
Confidence            44443    345556666677777888888888887744334443334444443   34667788888888888763  3


Q ss_pred             ChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh
Q 007842          429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       429 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      |.....+.++..+   ..+.++-+|..++.+++.-+...|.....+.++..   +.+|++..+|.+|+.+|+.+...-. 
T Consensus       538 g~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~-  610 (963)
T 4ady_A          538 GRQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDY-  610 (963)
T ss_dssp             TCGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred             CChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCH-
Confidence            4443334343333   35789999999999998777666654333333333   3467788899999999998764321 


Q ss_pred             HHHHhhHHHHHHh-hcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          509 EITCSRLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       509 ~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                          +. .|.++. +.++.++.||..++.+++.++...+.    ..++..|..++.|+|..||..|..||+.++
T Consensus       611 ----e~-v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          611 ----TT-VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             ----SS-HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             ----HH-HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence                22 334444 55678999999999999999765443    357778899999999999999999999876

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.60  E-value=2.9e-13  Score=124.14  Aligned_cols=226  Identities=13%  Similarity=0.088  Sum_probs=157.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---Chhhh
Q 007842          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFF  433 (587)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---~~~~~  433 (587)
                      +|.+..++++.++++|..++.+|..++......   ......+|.+.+++.++++.+|..++.++..++..-   .....
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            455666666666666666666666665433211   112345666667777777777777777776665421   01111


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh--
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--  508 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~--  508 (587)
                      ....+|.+..++.+++..+|..|+.+|+.++...   .........+|.+.+++.++++.+|..++.++++++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            2235777888888888999999999998887421   11123346788999999999999999999999999864322  


Q ss_pred             -HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007842          509 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       509 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~  584 (587)
                       ......++|.+..+++++++.+|..++.+|++++...+.   ......+++.|.+++.++++++|..|..+|..+...-
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             123456889999999999999999999999999863222   1234567899999999999999999999999998754


Q ss_pred             c
Q 007842          585 M  585 (587)
Q Consensus       585 ~  585 (587)
                      .
T Consensus       244 ~  244 (252)
T 4hxt_A          244 W  244 (252)
T ss_dssp             B
T ss_pred             C
Confidence            3

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.59  E-value=1.8e-11  Score=135.27  Aligned_cols=490  Identities=9%  Similarity=0.021  Sum_probs=296.8

Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhh----cCCCChH
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSAPDI  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~~  159 (587)
                      ...+...+..+. +++...|+.|-..|.++-+.  + .....+..++.   .+.+..+|..|+..+...    +..++++
T Consensus        15 ~~~l~~~l~~~~-~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~   87 (1049)
T 3m1i_C           15 IALLDQVVSTFY-QGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPND   87 (1049)
T ss_dssp             HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred             HHHHHHHHHHHh-CCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence            334444454444 33344677777777766433  1 22333333332   234556676666655433    2345555


Q ss_pred             HHH----HHHHHHHHhcCCC-----ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          160 LKT----ELRSIYTQLCQDD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       160 ~~~----~l~~~l~~l~~d~-----~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                      .+.    .+++.+.....++     ++.+|..++.++..++..-.+ ..++.+++.+....+ .++..+..+..+|..+.
T Consensus        88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~  165 (1049)
T 3m1i_C           88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS  165 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence            444    4444444433232     478999999999999988544 345677777777775 44556777777887776


Q ss_pred             hhcCh---------------h---hhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHH-hc
Q 007842          231 KLLEP---------------Q---DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVR-LL  289 (587)
Q Consensus       231 ~~~~~---------------~---~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~-~l  289 (587)
                      +.+..               .   ...+.+++.+.+++++ .+..++..+++++..+....+... ....+++.+.+ ++
T Consensus       166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l  245 (1049)
T 3m1i_C          166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM  245 (1049)
T ss_dssp             HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC
Confidence            54321               0   0123344555555443 457789999999887765443221 22456676663 33


Q ss_pred             CCChHHHHHHHHHhHHHHHhhh-CHH-----HHH----HhHhHHHHH--------------hccCCcHHHHHHHHHHHHc
Q 007842          290 RDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE--------------LSSDSSQHVRSALASVIMG  345 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~i~~~l~~--------------~~~d~~~~vr~~a~~~l~~  345 (587)
                      .  ++.+|..++.++..+...- ++.     ...    +.++..+..              ...+.++.+....++.+..
T Consensus       246 ~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~  323 (1049)
T 3m1i_C          246 T--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT  323 (1049)
T ss_dssp             H--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred             C--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence            3  6889999999999887652 221     111    112222211              1134456666666666655


Q ss_pred             cccccc--------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhh----c-hh---hHHhhHHHHHHHHhc--
Q 007842          346 MAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELAE--  407 (587)
Q Consensus       346 l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~---~~~~~~l~~l~~~~~--  407 (587)
                      ++....        .......+++.+......++.+++..++..+..+.+.+    . ..   .+...+++.+...+.  
T Consensus       324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~  403 (1049)
T 3m1i_C          324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP  403 (1049)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            543211        12234556777777777778899999988888777632    1 11   222344444444321  


Q ss_pred             -CC-------------------ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Q 007842          408 -DR-------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAE  465 (587)
Q Consensus       408 -~~-------------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~  465 (587)
                       |.                   .|..|.++...+..++.. ++....+.+.+.+...+.  ..+|..|++++.+++.+..
T Consensus       404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~  482 (1049)
T 3m1i_C          404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG  482 (1049)
T ss_dssp             TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred             cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence             11                   124566777777777754 344444556666666664  4789999999999998876


Q ss_pred             HhChH---HHhhhhHHHHHhhcc-----CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHhhcCCCChhHHHHHHH
Q 007842          466 EFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       466 ~~~~~---~~~~~l~~~l~~~l~-----d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~  536 (587)
                      ..+..   .+...+++.+..+..     ++.+.+|..++++++.+...+.. ..+...+++.+...+.|+++.||..|+.
T Consensus       483 ~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~  562 (1049)
T 3m1i_C          483 TMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD  562 (1049)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            55443   234455555554322     34566776799999988764332 2356778888888999999999999999


Q ss_pred             HHHHhhhhhchH----------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          537 VLQSLIPIVDQS----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       537 ~l~~l~~~~~~~----------~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      ++..++...+..          .+.+.++..+..+..+.+.+-.....+|++.+....+
T Consensus       563 al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            999999876643          3345666666666677666667777788887765543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.58  E-value=4.8e-13  Score=133.27  Aligned_cols=147  Identities=11%  Similarity=0.064  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCh-------HHH-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842          435 DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP-------EWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (587)
Q Consensus       435 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-------~~~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~  505 (587)
                      ...++.+..++.+ .+..++++|+.+|+.++...+.       ..+ ....+|.+.+++.+++..+|..|+.++.+++..
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            4456667777654 4689999999999999753222       112 246889999999999999999999999999864


Q ss_pred             cCh-HHHHhhHHHHHHhhcCCCCh------hHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCC-CccHHHHHH
Q 007842          506 MGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFAT  574 (587)
Q Consensus       506 ~~~-~~~~~~il~~l~~~l~d~~~------~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-d~~Vr~~a~  574 (587)
                      -.. ..+....+|.+++++.++++      .+...++.++.++...-...   ......+|.|.+++... ..+++..|.
T Consensus       362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~  441 (457)
T 1xm9_A          362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence            322 22356789999999987644      57889999999987543222   22346788888888877 889999999


Q ss_pred             HHHHHHH
Q 007842          575 QAIQSID  581 (587)
Q Consensus       575 ~al~~l~  581 (587)
                      ..|..+.
T Consensus       442 ~~L~~~~  448 (457)
T 1xm9_A          442 LLLSDMW  448 (457)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9887664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.56  E-value=5.1e-11  Score=131.75  Aligned_cols=508  Identities=8%  Similarity=0.037  Sum_probs=299.4

Q ss_pred             cccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcch
Q 007842            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVEH   83 (587)
Q Consensus         8 ~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~~   83 (587)
                      +..+..+++.+.+++...|.+|-..|..+ +. .| ..+..+...+..  +.+.++|..++..+.+.+..    +. .+.
T Consensus        15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-~~-~p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~-~~~   88 (1049)
T 3m1i_C           15 IALLDQVVSTFYQGSGVQQKQAQEILTKF-QD-NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLP-NDH   88 (1049)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HH-ST-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHH-Hh-Cc-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCC-HHH
Confidence            34577888888888888999999888764 22 22 223333333332  34678888888888765531    22 122


Q ss_pred             Hhhh----HHHHhhhhcch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842           84 AHVL----LPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (587)
Q Consensus        84 ~~~l----~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (587)
                      ...+    ++.+.....++     ++.+|.....++..++....++. +..+++.+.+.... ....+..++.++..+. 
T Consensus        89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-Wp~ll~~L~~~~~~-~~~~~~~~l~~L~~l~-  165 (1049)
T 3m1i_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSS-SVNVCENNMIVLKLLS-  165 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHTT-CHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHHcc-ChHHHHHHHHHHHHHH-
Confidence            2223    33332222222     37788888888888888766643 56666666655542 1112222222221111 


Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHhhhc
Q 007842          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~  233 (587)
                                 +-+.....+....-|..-.+  ..+..      ..+.+++.+...+.+ .+..++..+++++.......
T Consensus       166 -----------eev~~~~~~~~~~~r~~~lk--~~l~~------~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi  226 (1049)
T 3m1i_C          166 -----------EEVFDFSAEQMTQAKALHLK--NSMSK------EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI  226 (1049)
T ss_dssp             -----------HHHHTSCTTTSCHHHHHHHH--HHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred             -----------HHHHHhcchhhhhHHHHHHH--HHHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence                       11111101111111111100  01111      124455555555543 34678889999998877766


Q ss_pred             Chh-hhhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHh-CCCc--cccc-------hHHHHHH--------------
Q 007842          234 EPQ-DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAV-GPEP--TRMD-------LVPAYVR--------------  287 (587)
Q Consensus       234 ~~~-~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~-~~~~--~~~~-------l~~~l~~--------------  287 (587)
                      +.. ...+.+++.+.+ +..  ++.+|..+++++..++..- ++..  ....       ++..+..              
T Consensus       227 ~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~  304 (1049)
T 3m1i_C          227 PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA  304 (1049)
T ss_dssp             CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             CHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc
Confidence            643 233456666653 332  6789999999999888652 1110  0011       1221111              


Q ss_pred             hcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc-----ch--
Q 007842          288 LLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-----GK--  352 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-----~~--  352 (587)
                      ..+|.+.+.....++.+..+++...        .......+++.+......++..++..+++.+..+++..     ..  
T Consensus       305 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~  384 (1049)
T 3m1i_C          305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI  384 (1049)
T ss_dssp             HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGG
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            1134556666666666655544321        12234556777777777778889988888877776521     11  


Q ss_pred             -hHHHHhHHHHHHHhhcCC-------------------C---hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--
Q 007842          353 -DATIEQLLPIFLSLLKDE-------------------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--  407 (587)
Q Consensus       353 -~~~~~~l~~~l~~~l~d~-------------------~---~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--  407 (587)
                       ..+...+++.+...+.-+                   +   .+.|..+...|..++... .....+.+.+.+.+.+.  
T Consensus       385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~  463 (1049)
T 3m1i_C          385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGS  463 (1049)
T ss_dssp             GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCC
Confidence             234556666666554211                   0   134556667777776443 34444666777777664  


Q ss_pred             CCChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHH
Q 007842          408 DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITP  478 (587)
Q Consensus       408 ~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~  478 (587)
                      ..+|+.|.+++.+++.++..++..   .+.+.+++.+..+..     |+.+.||..++.+++.+.+.+... .+...+++
T Consensus       464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~  543 (1049)
T 3m1i_C          464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL  543 (1049)
T ss_dssp             SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            478999999999999988765433   234556666655432     355667767888888887654332 24567788


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChH----------HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~----------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      .+++.+.++++.+|..|+.++..++..++..          .+.+.++..+...+.+....-+..+.++++.++...+
T Consensus       544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            8888889999999999999999999877654          2356666666677777666677888999999988776

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.56  E-value=1.8e-13  Score=125.51  Aligned_cols=223  Identities=16%  Similarity=0.126  Sum_probs=166.7

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh
Q 007842          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  433 (587)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~  433 (587)
                      .+.+...++++++++|..++.+|..+...-..   .......+|.+.+++.++++.+|..++.++..++....   ....
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            56677777788888888888888665543111   11224567888888888888888888888887764211   1112


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH-
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-  509 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~-  509 (587)
                      ....+|.+..++.++++.+|..|+.+|+.+......   .......+|.+.+++.++++.+|..++.++++++...... 
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  173 (252)
T 4db8_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI  173 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            233688899999999999999999999998753222   1234568999999999999999999999999998643221 


Q ss_pred             --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                        .....++|.+..+++++++.+|..++.+|++++...+.   ......++|.|.+++.+.++++|..|..+|..+++
T Consensus       174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence              12356789999999999999999999999999853222   12345688999999999999999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.54  E-value=1.6e-11  Score=122.82  Aligned_cols=341  Identities=15%  Similarity=0.116  Sum_probs=201.3

Q ss_pred             HHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh---hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCC----Cc
Q 007842          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP  276 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~----~~  276 (587)
                      +|.+..++...++.++..|+..+..++..-.+   .....-.+|.+.+++.+++..++..|+.+|..++..-+.    ..
T Consensus        50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I  129 (584)
T 3l6x_A           50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI  129 (584)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            34444444444444454444444444421111   111223455566666666666666666666665531000    11


Q ss_pred             cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCH-HHHHHhHhHHHHHhc------------------cCCcHHHH
Q 007842          277 TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELS------------------SDSSQHVR  336 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~------------------~d~~~~vr  336 (587)
                      .....+|.++.++.+ .+.+++..++.+|..++..-.. ..+....+|.|.+++                  ...+..|+
T Consensus       130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~  209 (584)
T 3l6x_A          130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL  209 (584)
T ss_dssp             HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred             HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence            122356666666664 4566666666666666552211 122233445555443                  11245777


Q ss_pred             HHHHHHHHccccccc--hhHHH--HhHHHHHHHhhc------CCChHHHHHHHHhhhhhhhhh-----------------
Q 007842          337 SALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI-----------------  389 (587)
Q Consensus       337 ~~a~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~-----------------  389 (587)
                      ..++.+|.+++..-.  .....  .-+++.++.+++      +.+....+.++.+|..++...                 
T Consensus       210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~  289 (584)
T 3l6x_A          210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV  289 (584)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccc
Confidence            777777777765321  11111  123344444443      234456666666665554321                 


Q ss_pred             ----------chhh-HHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh-------hhhHHHHHHHHHHhcCCCch
Q 007842          390 ----------GIDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV-------GFFDDKLGALCMQWLQDKVY  450 (587)
Q Consensus       390 ----------~~~~-~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~d~~~  450 (587)
                                |.+. +....++.+..++. ..++.++..++.++..++..-+.       .......+|.+..++..++.
T Consensus       290 ~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~  369 (584)
T 3l6x_A          290 ANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE  369 (584)
T ss_dssp             ------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCH
T ss_pred             cccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence                      1111 11245667777774 56799999999999988643211       11124568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCh-HHHhhhhHHHHHhhccCC--------chhHHHHHHHHHHHhhcccCh---HHHHhhHHHH
Q 007842          451 SIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGS---EITCSRLLPV  518 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~--------~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~  518 (587)
                      .|+..|+.+|+++...-.. ..+....+|.+..++.++        +..++..++.+++++...-..   .......+|.
T Consensus       370 ~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~  449 (584)
T 3l6x_A          370 RVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEK  449 (584)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Confidence            9999999999999874332 234567899999998776        356888999999988643111   1234668999


Q ss_pred             HHhhcCCC--ChhHHHHHHHHHHHhhhh
Q 007842          519 VINASKDR--VPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       519 l~~~l~d~--~~~vR~~~~~~l~~l~~~  544 (587)
                      +..++.+.  .+.++..|+.+|..++.+
T Consensus       450 Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          450 LVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            99999886  889999999999999854

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.54  E-value=4e-11  Score=129.55  Aligned_cols=491  Identities=10%  Similarity=0.121  Sum_probs=289.9

Q ss_pred             hhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC--CCcchhhHHhhhHhhcCCCChH--
Q 007842           85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAPDI--  159 (587)
Q Consensus        85 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~--  159 (587)
                      ..+...+..... +.++..|+.|...|.++-+.  ++ .+.....++   .++.  +..+|..|+.++......++++  
T Consensus         6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~-aw~~~~~iL---~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~   79 (980)
T 3ibv_A            6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--ST-GWKICHEIF---SEKTKYKPSTRLICLQTLSEKVREWNNESN   79 (980)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TT-HHHHHHHHT---TCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hh-HHHHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence            344444433332 33678888888888776543  21 233222222   1222  4567777777665443344433  


Q ss_pred             ------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCch-hHHHHHHHHHHHHhh
Q 007842          160 ------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGK  231 (587)
Q Consensus       160 ------~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~  231 (587)
                            .++.+++.+..... +..+.+|...+.++..++....++ .++.+++-+..+.+..+. ..-...++++..+.+
T Consensus        80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E  158 (980)
T 3ibv_A           80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD  158 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence                  44555555555221 345789999999999999886443 344555555555543322 233445555654444


Q ss_pred             hcCh-------h----------h----hhhchHHH----HHHhccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHH
Q 007842          232 LLEP-------Q----------D----CVAHILPV----IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAY  285 (587)
Q Consensus       232 ~~~~-------~----------~----~~~~l~~~----l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l  285 (587)
                      .+.+       +          .    ..+.+.+.    +....+..++.++..+.++++.+....+... ....+++.+
T Consensus       159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l  238 (980)
T 3ibv_A          159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLL  238 (980)
T ss_dssp             HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHH
T ss_pred             HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHH
Confidence            4321       0          0    01112333    3333333567888888888888776443221 224688888


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHh------HHHHHhcc-CCcHHHHHHHHHHHHcccccc------c-
Q 007842          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL------PCVKELSS-DSSQHVRSALASVIMGMAPLL------G-  351 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~------~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~------~-  351 (587)
                      .+++.+  +.+|.+|+++|..+............++      +.+..+.. +.+.++....++.+..++..+      + 
T Consensus       239 ~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~  316 (980)
T 3ibv_A          239 YSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS  316 (980)
T ss_dssp             HHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            888876  7899999999999877543221111112      11222222 456666665655554443221      1 


Q ss_pred             ---h------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch--------h---hHHhhHHHHHHHHh---cC
Q 007842          352 ---K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELA---ED  408 (587)
Q Consensus       352 ---~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~~l~~l~~~~---~~  408 (587)
                         .      ......++|.++.++.+++.+|-..++..+..+......        +   .+...+++.+..-+   .+
T Consensus       317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d  396 (980)
T 3ibv_A          317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDES  396 (980)
T ss_dssp             --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence               0      033557889999999999999988887777766543221        1   12233333333322   11


Q ss_pred             CCh-------------HHHHHHHHHHHHHHHhhChhhhHH----HHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHhC
Q 007842          409 RHW-------------RVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFG  468 (587)
Q Consensus       409 ~~~-------------~vR~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~  468 (587)
                      .+|             ..|.... .+-.....++++.+.+    .+.+.+.+.+.   +.+|..+++++.+++.+.+...
T Consensus       397 ~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~  475 (980)
T 3ibv_A          397 QEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR  475 (980)
T ss_dssp             CCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             cccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence            112             3566655 5555566677777666    56666666553   4679999999999999887554


Q ss_pred             hHH--------HhhhhHHHHHhhcc-----CCchhHHHHHHHHHHHhhcccCh-HHHHhhHHHHHHh--hcCCCChhHHH
Q 007842          469 PEW--------AMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVIN--ASKDRVPNIKF  532 (587)
Q Consensus       469 ~~~--------~~~~l~~~l~~~l~-----d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~il~~l~~--~l~d~~~~vR~  532 (587)
                      ...        ..+.+++.+..+++     ++.+.+|.+++++++.....+.. ..+.+.+++.+..  .+.++++.||.
T Consensus       476 ~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~  555 (980)
T 3ibv_A          476 GPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRP  555 (980)
T ss_dssp             SGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHH
T ss_pred             ccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHH
Confidence            211        12345666666544     77899999999999999886543 2355677788888  88889999999


Q ss_pred             HHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC-------CC--------------ccHHHHHHHHHHHHHHhhc
Q 007842          533 NVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED-------PD--------------VDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       533 ~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d-------~d--------------~~Vr~~a~~al~~l~~~~~  585 (587)
                      +++.++..+++..+..  .+.+.++..+..++.-       .|              .+-+.+..+|++.+....+
T Consensus       556 ~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          556 RAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            9999999999877653  3344555555554331       11              2246677777777776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.53  E-value=8.1e-11  Score=119.58  Aligned_cols=483  Identities=11%  Similarity=0.099  Sum_probs=289.5

Q ss_pred             HHHHHHH--hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-----C-CcHHH---HHHHHHHhccccccCC
Q 007842           11 IAVLIDE--LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-----D-DDDEV---LLAMAEELGVFIPYVG   79 (587)
Q Consensus        11 ~~~l~~~--l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-----~-~~~~v---~~~~~~~l~~l~~~~~   79 (587)
                      ++.|+..  ++...+++|-.++-.+..+-... ++.+.+.+.-++....     + ++++.   ...++...+ +++-+.
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfP-i~p~~~  247 (778)
T 3opb_A          170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYP-SLTTLC  247 (778)
T ss_dssp             TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTT-TTHHHH
T ss_pred             hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhc-CCHHHH
Confidence            4555555  45778889988887777654433 3455555555554322     1 12222   222222222 111111


Q ss_pred             Ccch-HhhhHHHHhhhh-cchhhHHHHHHHHHHHHHHhhcC-hhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCC
Q 007842           80 GVEH-AHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (587)
Q Consensus        80 ~~~~-~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~  156 (587)
                      ..-+ ...+.+.+...+ +.++..+..++++.+...|..-. .+.+.+...|++.++.+++  ..|..|+..+..++...
T Consensus       248 s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~  325 (778)
T 3opb_A          248 SEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFT  325 (778)
T ss_dssp             HHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGG
T ss_pred             HHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCC
Confidence            0000 012344444333 34556666777777776653211 2344566778888888663  56666666666655422


Q ss_pred             --ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-ch--hhhHHHHHHHHhhhC-CchhHHHHHHHHHHHHh
Q 007842          157 --PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH--LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALG  230 (587)
Q Consensus       157 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~--~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~  230 (587)
                        .......+.+.+...+.+++...|+.+++.|..+...-.. +.  ..+.+++.+..++++ ++..+-..++.++..+.
T Consensus       326 ~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          326 KLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             TCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred             CCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence              2234566888898888887666799999999988643211 11  123456667777774 56678888899999888


Q ss_pred             hhcChhh----hhhchHHHHHHhc----cCCcHHHHHHHHHHHHH-HHHHhCCCccccchHHHHHHhcCCChHHHHHHHH
Q 007842          231 KLLEPQD----CVAHILPVIVNFS----QDKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA  301 (587)
Q Consensus       231 ~~~~~~~----~~~~l~~~l~~~~----~d~~~~vR~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  301 (587)
                      ...+...    ...++.++...-.    .++++.  ..... +.. -...+    .....+|.+..++++.++.+|..++
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~~~-v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~  478 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK--AAKED-ILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVV  478 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHH--HHHHH-HHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccc--cchHH-HHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHH
Confidence            7654311    1222222222110    001111  11111 111 11111    2346899999999999999999999


Q ss_pred             HhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHH---HHHHHHHHHHccccccchhHHH-----HhHHHHHHHhhcC-C
Q 007842          302 GKVTKFCRILNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-E  370 (587)
Q Consensus       302 ~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~  370 (587)
                      +++..++..-...  ......++.+..++.+....   +|..|+.+|.++.....+....     -..+|.+..+|.. .
T Consensus       479 ~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~  558 (778)
T 3opb_A          479 RIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST  558 (778)
T ss_dssp             HHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCC
Confidence            9999998653222  23345678888887766544   8999999998887443322211     1567888899872 2


Q ss_pred             Ch-------------HHHHHHHHhhhhhhhhhch------hhHHh--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 007842          371 FP-------------DVRLNIISKLDQVNQVIGI------DLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       371 ~~-------------~vr~~a~~~l~~l~~~~~~------~~~~~--~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  429 (587)
                      ..             --+..|+.+|.+++..-+.      ..+..  ..+|.+.+++.+++..+|.++++.+..++..-.
T Consensus       559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e  638 (778)
T 3opb_A          559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL  638 (778)
T ss_dssp             SCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred             CcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence            11             1266788888888865421      22222  578999999999999999999999999886432


Q ss_pred             ---hhhhH---HH---HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh--H-HHh-hhhHHHHHhhccC--CchhHHHH
Q 007842          430 ---VGFFD---DK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E-WAM-QHITPQVLEMINN--PHYLYRMT  494 (587)
Q Consensus       430 ---~~~~~---~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~-~~l~~~l~~~l~d--~~~~~R~~  494 (587)
                         ..++.   +.   -++.++.++...+..+|.+|..+++.+......  . ... ...++.+..++.+  ++..+|..
T Consensus       639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R  718 (778)
T 3opb_A          639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR  718 (778)
T ss_dssp             GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHH
Confidence               12221   11   267788889999999999999999988643221  1 112 2467777777777  78889999


Q ss_pred             HHHHHHHhhc
Q 007842          495 ILRAISLLAP  504 (587)
Q Consensus       495 a~~~l~~l~~  504 (587)
                      ++.++.+++.
T Consensus       719 ~~~~l~NL~~  728 (778)
T 3opb_A          719 LLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.52  E-value=2.1e-12  Score=118.32  Aligned_cols=188  Identities=12%  Similarity=0.065  Sum_probs=116.3

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhh
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGF  432 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~  432 (587)
                      .+|.+..++++.++++|..++.+|..++..-..   .......+|.+..++.++++.+|..++.++..++....   ...
T Consensus        45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  124 (252)
T 4hxt_A           45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI  124 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344444444444444444444444444432100   01112344555555555555555555555555542110   011


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh-
Q 007842          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-  508 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~-  508 (587)
                      .....+|.+..++.++++.+|..++.+++.++.....   .......+|.+..++.++++.+|..++.++++++..... 
T Consensus       125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  204 (252)
T 4hxt_A          125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA  204 (252)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            1223567777888888888888888888888752211   123356788999999999999999999999999863221 


Q ss_pred             --HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          509 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       509 --~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                        ......+++.+.++++++++.+|..++.+|.++....+
T Consensus       205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence              11245678999999999999999999999999987643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.52  E-value=9.7e-13  Score=118.69  Aligned_cols=190  Identities=15%  Similarity=0.143  Sum_probs=105.6

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhhh-hhhhhch-h---hHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhC-hh
Q 007842          359 LLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D---LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG-VG  431 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~-~---~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~-~~  431 (587)
                      +-+-+...+.+.++.-|..++..+.. ++..... .   .-...++..+...+ +|.+..+|..++.+++.++..++ +.
T Consensus        17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~   96 (249)
T 2qk1_A           17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG   96 (249)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence            33445555666666666666666665 5532211 0   01134455555555 56666666666666666666555 33


Q ss_pred             h---hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 007842          432 F---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (587)
Q Consensus       432 ~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~  505 (587)
                      +   |...++|.++..++|....||.++..++..++...++..   ..+.+++.+...+++++|.+|+.++.+++.+...
T Consensus        97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A           97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            2   233455666666666666666666666666666543211   1345566666666666666666666666666665


Q ss_pred             cCh--H---HHH-hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          506 MGS--E---ITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       506 ~~~--~---~~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      .+.  .   .+. +.++|.+.+++.|+++.||..+.++++.++..+|.+
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~  225 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN  225 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence            552  1   234 556666666666666666666666666666666554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.52  E-value=6.7e-12  Score=124.98  Aligned_cols=148  Identities=12%  Similarity=0.043  Sum_probs=108.1

Q ss_pred             hHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh-------hh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          397 SLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       397 ~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ..++.+..++. .+++.++..++.++..++..-+..       .+ ....+|.+..++.+++..+|..|+.+|.++...-
T Consensus       283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            45666667665 456899999999998886432210       11 1245789999999999999999999999997632


Q ss_pred             Ch-HHHhhhhHHHHHhhccCCch------hHHHHHHHHHHHhhcccChHH---HHhhHHHHHHhhcCCC-ChhHHHHHHH
Q 007842          468 GP-EWAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR-VPNIKFNVAK  536 (587)
Q Consensus       468 ~~-~~~~~~l~~~l~~~l~d~~~------~~R~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~-~~~vR~~~~~  536 (587)
                      .. ..+....+|.+.+++..++.      .+...++.+++++...-....   .....++.+..+++++ +..++..|+.
T Consensus       363 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~  442 (457)
T 1xm9_A          363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence            21 12345688999999887643      577788899998875433211   1246789999999998 9999999999


Q ss_pred             HHHHhhhh
Q 007842          537 VLQSLIPI  544 (587)
Q Consensus       537 ~l~~l~~~  544 (587)
                      .|.+++.+
T Consensus       443 ~L~~~~~~  450 (457)
T 1xm9_A          443 LLSDMWSS  450 (457)
T ss_dssp             HHHTTSSS
T ss_pred             HHHHHHcc
Confidence            99988753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.50  E-value=1.9e-12  Score=118.54  Aligned_cols=225  Identities=14%  Similarity=0.105  Sum_probs=152.1

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch--h
Q 007842          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D  353 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~  353 (587)
                      ..-.+.+...+.++++++|..++.++..+...-.+   ......++|.+.+++.++++.+|..++.++..++...+.  .
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            34578888888888899999999999765543111   122345788899999999999999999999998863221  1


Q ss_pred             H-HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 007842          354 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       354 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  429 (587)
                      . .....+|.+..+++++++.+|..++.+|+.++......   ......+|.+.+++.++++.+|..++.++..++..-.
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            1 22347889999999999999999999999987654322   1224577888888888888888888888887764211


Q ss_pred             h---hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          430 V---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       430 ~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      .   .......+|.+..++.+++..+|..|+.+|+.++.....   .......++.+.+++.++++.+|..|+.+|++++
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            0   111233566777777777777777777777777631100   1122335556666666666666666666665554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=7.7e-13  Score=119.35  Aligned_cols=194  Identities=13%  Similarity=0.237  Sum_probs=131.7

Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHH-HHHHhCC----CccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhC-HH
Q 007842          242 ILPVIVNFSQDKSWRVRYMVANQLYE-LCEAVGP----EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN-PE  314 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~-~~~~~~~----~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~  314 (587)
                      +-+-+...+++++|..|..++..++. ++...+.    ......++..+.+.+ +|.+..||..|+.+++.++..++ +.
T Consensus        17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~   96 (249)
T 2qk1_A           17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG   96 (249)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence            33344555677788888888888877 6644222    111235677777777 67788888888888888887776 32


Q ss_pred             ---HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhh
Q 007842          315 ---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       315 ---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (587)
                         .+...++|.+...++|+...||.++..++..++...++.   .+.+.+++.+...+++.++.+|..++..+..+...
T Consensus        97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A           97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence               455667778888778888888888777777776655321   11445667777777777778888888887777766


Q ss_pred             hch--h---hHH-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHH
Q 007842          389 IGI--D---LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  435 (587)
Q Consensus       389 ~~~--~---~~~-~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~  435 (587)
                      .+.  +   .+. +.++|.+.+++.|.+..+|.++.++++.+.+.+|.+.+.+
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p  229 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK  229 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            552  1   234 6677777777777777777777777777777777655443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.48  E-value=4.1e-11  Score=117.22  Aligned_cols=307  Identities=12%  Similarity=0.071  Sum_probs=205.2

Q ss_pred             hhchHHHHHHhccCC------------cHHHHHHHHHHHHHHHHHhCCCccc---cchH----------HHHHHhcCCCh
Q 007842          239 VAHILPVIVNFSQDK------------SWRVRYMVANQLYELCEAVGPEPTR---MDLV----------PAYVRLLRDNE  293 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~------------~~~vR~~a~~~l~~~~~~~~~~~~~---~~l~----------~~l~~~l~d~~  293 (587)
                      ..-++|.+.+++...            ++.+|..|+.++++++..-++....   ..++          +.+.+++....
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            445677777766642            2688899999999888765443211   1122          33334343221


Q ss_pred             --HH-----HHH-------HHHHhHHHHHhhhCHH--HHHHhHhHHHHHhcc-----------CCcHHHHHHHHHHHHcc
Q 007842          294 --AE-----VRI-------AAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----------DSSQHVRSALASVIMGM  346 (587)
Q Consensus       294 --~~-----vr~-------~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~-----------d~~~~vr~~a~~~l~~l  346 (587)
                        .+     ++.       .|+.+|..++..-...  ......++.+..++.           +.+..++..++++|.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL  227 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL  227 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence              11     555       7888888875431111  112345666666663           23578999999999999


Q ss_pred             ccccc--hhHH--HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hh-HHhhHHHHHHHH-hcCCChHHHHHH
Q 007842          347 APLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAI  417 (587)
Q Consensus       347 ~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~~~-~~~~~~~vR~~~  417 (587)
                      +..-.  +..+  ..-.+|.+..++.+.+++++..++.+|..++..-+.   .. .....+|.+.++ ..+.+..++..+
T Consensus       228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A  307 (458)
T 3nmz_A          228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV  307 (458)
T ss_dssp             HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence            85432  1122  134589999999999999999999999998753111   11 223568888886 566788999988


Q ss_pred             HHHHHHHHHhh-C-hhhh--HHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHH--hChHH----HhhhhHHHHHhh
Q 007842          418 IEYIPLLASQL-G-VGFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPEW----AMQHITPQVLEM  483 (587)
Q Consensus       418 ~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~----~~~~l~~~l~~~  483 (587)
                      +.++..++... . ...+  ....+|.+..++.+...    .++..|+.+|.++...  -+.+.    .....+|.+.++
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L  387 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  387 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence            88888887632 1 1112  23467888888876543    5899999999988852  12221    234578999999


Q ss_pred             ccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          484 INNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       484 l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      +.+++..++..|+.+|.+++.....   .......+|.+..+++++++.+|..++.+|.++...-
T Consensus       388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999742111   1124567899999999999999999999999988653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.47  E-value=5.3e-09  Score=113.22  Aligned_cols=556  Identities=12%  Similarity=0.082  Sum_probs=311.2

Q ss_pred             HHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHH-------HHHHHHHHhccccc-cCCCc----------chH
Q 007842           23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE-------VLLAMAEELGVFIP-YVGGV----------EHA   84 (587)
Q Consensus        23 ~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~-------v~~~~~~~l~~l~~-~~~~~----------~~~   84 (587)
                      +-.|......+..+++...|+ .|+.+++-+.+....++.       +...+.+.+..+.. .++..          ...
T Consensus       114 ~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~  192 (1023)
T 4hat_C          114 KNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF  192 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            445566777788888777654 478888888775554432       22233333332211 01100          123


Q ss_pred             hhhHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhH-HhhHHHHHH-HHhcCCCCcchhhHHhhhHhhcC-CC-Ch-
Q 007842           85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVK-RLAAGEWFTARVSACGLFHIAYP-SA-PD-  158 (587)
Q Consensus        85 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~-~l~~~~~~~~r~~a~~~l~~~~~-~~-~~-  158 (587)
                      +.+++++..++. ..++.+...++++++.....++...+ ...+++.+. .+..++  ..|..|+..+..+.. .. ++ 
T Consensus       193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~--~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSP--DTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSH--HHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCH--HHHHHHHHHHHHHHccccCCch
Confidence            455666655554 45678888999999998887776543 345777766 666543  467778888877665 32 22 


Q ss_pred             -HHHH-------HHHHHH-HHh-------------cCCCChHHHHHHHHhHHHHHHhhcc-----chhhhHH---HHHHH
Q 007842          159 -ILKT-------ELRSIY-TQL-------------CQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDI---MSIFE  208 (587)
Q Consensus       159 -~~~~-------~l~~~l-~~l-------------~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l---~~~l~  208 (587)
                       .+.+       .+++.+ ..+             ..+.+.+.-+..+..+..+++....     +...+.+   +..+.
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             1221       122212 100             1233456666666666666555332     1112222   23444


Q ss_pred             HhhhCCchhHHHHHHHHHHHHhhhcChh--------hhhhchHHHHHHhcc----------C-CcH----------HHHH
Q 007842          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQ--------DCVAHILPVIVNFSQ----------D-KSW----------RVRY  259 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~~~----------d-~~~----------~vR~  259 (587)
                      .....++..+-..+.+.+..+.+.+-.+        .....+.+.+..-+.          | .+|          ....
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f  430 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY  430 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence            4555667777777888877776643311        122234444443221          1 111          1111


Q ss_pred             HHH-HHHHHHHHHhCCCccccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhcc----
Q 007842          260 MVA-NQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS----  329 (587)
Q Consensus       260 ~a~-~~l~~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~----  329 (587)
                      ... .+|..+....+ ......+++.+.+.+.+  .+|..|++++.+++.+++...++   .+.+.++|.+..++.    
T Consensus       431 ~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          431 KSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            111 44444433322 22233455555555543  57999999999999999987653   567888898888876    


Q ss_pred             -CCcHHHHHHHHHHHHccccccch-hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh----------HHhh
Q 007842          330 -DSSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQS  397 (587)
Q Consensus       330 -d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~  397 (587)
                       |+...||..++..++++++.+.. ..+.+.+++.+...+.+.++.|...|+.++..+++..+..-          +.+.
T Consensus       510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~  589 (1023)
T 4hat_C          510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT  589 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence             46678899999999999887642 34567788888888888889999999999999998765432          3455


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhc--------CCCc-----hHH--HHHHHH
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWL--------QDKV-----YSI--RDAAAN  458 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l--------~d~~-----~~v--r~~a~~  458 (587)
                      ++..+.....+-+..-+..++++++.++...+.+.    +.+.+++.+...+        .+++     ..+  -...++
T Consensus       590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~  669 (1023)
T 4hat_C          590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIK  669 (1023)
T ss_dssp             HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHH
Confidence            55556666666677888899999999999887443    2223333322211        1211     112  233455


Q ss_pred             HHHHHHHHhChHHH--hhhhHHHHHhhccC-----------------Cch------hHHHHHHHHHHHhhccc-ChHHHH
Q 007842          459 NLKRLAEEFGPEWA--MQHITPQVLEMINN-----------------PHY------LYRMTILRAISLLAPVM-GSEITC  512 (587)
Q Consensus       459 ~l~~l~~~~~~~~~--~~~l~~~l~~~l~d-----------------~~~------~~R~~a~~~l~~l~~~~-~~~~~~  512 (587)
                      ++..++...|..+.  ...+++.+.++.+-                 ..+      .+|...++.+....... +.+.+.
T Consensus       670 ~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~  749 (1023)
T 4hat_C          670 TNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVV  749 (1023)
T ss_dssp             HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            66667777776542  23445544443211                 111      23333444444444322 233333


Q ss_pred             hhHHHHHHh-h---cCCCChhHHH-HHHHHHHHhhhhhchH-------HHHhhHHHHHHHhcCC--CCccHHHHHHHHHH
Q 007842          513 SRLLPVVIN-A---SKDRVPNIKF-NVAKVLQSLIPIVDQS-------MVEKTIRPCLVELTED--PDVDVRFFATQAIQ  578 (587)
Q Consensus       513 ~~il~~l~~-~---l~d~~~~vR~-~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d--~d~~Vr~~a~~al~  578 (587)
                      ..++|.++. .   .....+..|. .++.....++.+++..       .+...+-|++.-+..|  .-|+.|..-.+-+.
T Consensus       750 ~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~  829 (1023)
T 4hat_C          750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLK  829 (1023)
T ss_dssp             HHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence            344444333 2   2223444443 3444445555555542       2223334444444443  34788888777777


Q ss_pred             HHHH
Q 007842          579 SIDH  582 (587)
Q Consensus       579 ~l~~  582 (587)
                      .+.+
T Consensus       830 ~~~~  833 (1023)
T 4hat_C          830 VINE  833 (1023)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.43  E-value=1.9e-09  Score=116.75  Aligned_cols=508  Identities=8%  Similarity=0.034  Sum_probs=294.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcc---
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE---   82 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~---   82 (587)
                      .++.+++.+.+++...|.+|-+.|..+ +. .| ..+......+..  ..++++|..++..+.+.+..    ++..+   
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~-q~-sp-~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~   91 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKF-QD-NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIG   91 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHH-HH-CT-TGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHH-Hc-Cc-cHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            578899999888888999999888764 22 22 234444444432  34578888888888765542    22111   


Q ss_pred             hHhhhHHHHhhhhcch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCC
Q 007842           83 HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (587)
                      ....+++.+.+...++     .+.+|.....++..++...-++. +..+++.+.+...+.. ......+.++..+     
T Consensus        92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~~-~~~~~~L~iL~~L-----  164 (1023)
T 4hat_C           92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSSV-NVCENNMIVLKLL-----  164 (1023)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTCH-HHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCCH-HHHHHHHHHHHHH-----
Confidence            1123444444433343     35677778888888887766654 5556666655554321 1111111111111     


Q ss_pred             hHHHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcCh
Q 007842          158 DILKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                             .+-+.....+. ...-|...-..+..-         .+.+++++...+. ...+.+...+++++....+.++.
T Consensus       165 -------~EEV~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i  228 (1023)
T 4hat_C          165 -------SEEVFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY  228 (1023)
T ss_dssp             -------HHHHHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT
T ss_pred             -------HHHHHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH
Confidence                   11111111111 111122221222211         2344555544443 34567788899999988888775


Q ss_pred             hh-hhhchHHHHH-HhccCCcHHHHHHHHHHHHHHHHH-h-CCC-ccccch-------HHHH-HHh-------------c
Q 007842          236 QD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRMDL-------VPAY-VRL-------------L  289 (587)
Q Consensus       236 ~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~-~-~~~-~~~~~l-------~~~l-~~~-------------l  289 (587)
                      .. ..+.+++.+. .+++  ++..|..|++++..++.. . ++. .....+       ++.+ ..+             .
T Consensus       229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~  306 (1023)
T 4hat_C          229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA  306 (1023)
T ss_dssp             HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred             HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence            42 3455777777 7765  467999999999998752 2 121 111111       1111 100             1


Q ss_pred             CCChHHHHHHHHHhHHHHHhhhCH--------HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc-----h---h
Q 007842          290 RDNEAEVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----K---D  353 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-----~---~  353 (587)
                      .+.+.+.....+..+..+++....        .......+..+......+++++-..++..+..+.+..-     .   .
T Consensus       307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~  386 (1023)
T 4hat_C          307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE  386 (1023)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            234455555555555555543211        11122223455566666777776666666555543221     1   1


Q ss_pred             HHHHhHHHHHHHhhcCCC-------------------hH--HHH-HHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC--C
Q 007842          354 ATIEQLLPIFLSLLKDEF-------------------PD--VRL-NIISKLDQVNQVIGIDLLSQSLLPAIVELAED--R  409 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~-------------------~~--vr~-~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~  409 (587)
                      .+...+++.+...+.-+.                   .+  ..- ..-.+|..+....+ ....+.+++.+.+.+.+  .
T Consensus       387 ~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~  465 (1023)
T 4hat_C          387 EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEW  465 (1023)
T ss_dssp             HHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTC
T ss_pred             HHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCC
Confidence            234456666665554221                   00  111 11133333333223 34445667777665543  6


Q ss_pred             ChHHHHHHHHHHHHHHHhhChh---hhHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHH
Q 007842          410 HWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQV  480 (587)
Q Consensus       410 ~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l  480 (587)
                      +|+.|.+++-+++.++..+..+   .+.+.++|.++.+..     |+...||..++.++|...+.+... .+.+.+++.+
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L  545 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL  545 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8999999999999999876543   345567777777765     466678888889999888755321 2456777888


Q ss_pred             HhhccCCchhHHHHHHHHHHHhhcccChHH----------HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          481 LEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       481 ~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      ++.+.++++.+..+|+.++..+++.++...          +.+.++..+.....+-.+.-+..+.++++.++...+..
T Consensus       546 ~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~  623 (1023)
T 4hat_C          546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV  623 (1023)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence            888888899999999999999998777543          45666666667666778888899999999999987754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.43  E-value=9.4e-12  Score=110.34  Aligned_cols=187  Identities=15%  Similarity=0.109  Sum_probs=138.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---h
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---P  469 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~  469 (587)
                      +...|.+..++.++++.+|..++..+..++..-.   ........+|.+..++.++++.+|..|+.+|++++....   .
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            3445666666777777777777777776653211   111222467888888999999999999999998874211   1


Q ss_pred             HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH---HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          470 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       470 ~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      .......+|.+..++.+++..+|..++.++++++......   ......+|.+.++++++++.+|..++.+|.+++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            1233567899999999999999999999999998632221   1245689999999999999999999999999986532


Q ss_pred             hH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          547 QS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       547 ~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      ..   ......++.|.+++.+++++||..|..+|..+++
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            22   3345688999999999999999999999998864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.42  E-value=5.6e-11  Score=116.27  Aligned_cols=303  Identities=13%  Similarity=0.048  Sum_probs=207.2

Q ss_pred             chHHHHHHhcCCC------------hHHHHHHHHHhHHHHHhhhCHHH---HHHhHh----------HHHHHhccCCc--
Q 007842          280 DLVPAYVRLLRDN------------EAEVRIAAAGKVTKFCRILNPEL---AIQHIL----------PCVKELSSDSS--  332 (587)
Q Consensus       280 ~l~~~l~~~l~d~------------~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~----------~~l~~~~~d~~--  332 (587)
                      ..+|.|+++++..            ++++|..|+.+|..++..-+...   ....++          +.+.+++..+.  
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            5788888888753            36999999999999987543211   111122          22223332221  


Q ss_pred             H-----HHHH-------HHHHHHHccccccc-hhHH-HHhHHHHHHHhhc-----------CCChHHHHHHHHhhhhhhh
Q 007842          333 Q-----HVRS-------ALASVIMGMAPLLG-KDAT-IEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       333 ~-----~vr~-------~a~~~l~~l~~~~~-~~~~-~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~  387 (587)
                      .     .++.       .++++|.+++..-. .+.+ ..-.++.+..++.           +.++.++..|+.+|..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~  229 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF  229 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence            1     1544       78888888864311 1111 2235677777763           1346789999999999985


Q ss_pred             hhc-hh-hH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhh-HHHHHHHHHHh-cCCCchHHHHHHHH
Q 007842          388 VIG-ID-LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQW-LQDKVYSIRDAAAN  458 (587)
Q Consensus       388 ~~~-~~-~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~  458 (587)
                      .-. .. .+  ....+|.+..++.+++..++..++.++..++..-..   ..+ ....+|.++.+ +.+.+..++..|+.
T Consensus       230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~  309 (458)
T 3nmz_A          230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS  309 (458)
T ss_dssp             TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred             CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHH
Confidence            432 11 12  245699999999999999999999999888642111   111 12356778886 56678899999999


Q ss_pred             HHHHHHHHh---ChHHH-hhhhHHHHHhhccCCch----hHHHHHHHHHHHhhcc--cChHH----HHhhHHHHHHhhcC
Q 007842          459 NLKRLAEEF---GPEWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASK  524 (587)
Q Consensus       459 ~l~~l~~~~---~~~~~-~~~l~~~l~~~l~d~~~----~~R~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~  524 (587)
                      ++.++....   ..... ....+|.+..++.+++.    .++..++.+|.+++..  .+.+.    .....+|.++.+++
T Consensus       310 aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~  389 (458)
T 3nmz_A          310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK  389 (458)
T ss_dssp             HHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred             HHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence            999998632   12222 35678999998876643    4899999999998752  12221    23567899999999


Q ss_pred             CCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          525 DRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       525 d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      +++..++..++.+|.+++..-..   .......+|.|.+++...+..+|..|+.||..|..
T Consensus       390 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999843211   13345678999999999999999999999999875

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.39  E-value=5.5e-14  Score=124.45  Aligned_cols=187  Identities=22%  Similarity=0.232  Sum_probs=111.2

Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH
Q 007842          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN  248 (587)
Q Consensus       169 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  248 (587)
                      ..+++|+++.||..++..+.       .        ..+..+.+|+++.||..++..+       +.        +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence            35567777788777776531       1        1245567777777777776532       11        23556


Q ss_pred             hccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhc
Q 007842          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (587)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  328 (587)
                      +++|++|.||..++..+       +     .   +.+..+++|+++.||.+++..+       +.        +.+..++
T Consensus       106 ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            67777777777777642       1     1   1245556777777777776631       11        2345666


Q ss_pred             cCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC
Q 007842          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~  408 (587)
                      +|+++.||..++..+       +.        +.+..+++|+++.||..++..+.       .        +.+..+++|
T Consensus       156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcC
Confidence            777777777777651       11        23345667777777777776531       1        224445677


Q ss_pred             CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      ++|.||..++..++               .+.+..+ +|+++.||.++...|+
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            77777777766543               1334444 7777777777765543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.36  E-value=1.7e-13  Score=121.37  Aligned_cols=186  Identities=20%  Similarity=0.274  Sum_probs=114.4

Q ss_pred             HhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHh
Q 007842          287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  366 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (587)
                      .+++|+++.||..++..+       +        ...+..+++|+++.||..++..+.       .        +.+..+
T Consensus        57 ~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l  106 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL  106 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence            445777777777777753       1        123556677777777777776431       1        234566


Q ss_pred             hcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC
Q 007842          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  446 (587)
                      ++|+++.||..++..+.       .        +.+..+++|+++.||..++..       ++.        +.+..+++
T Consensus       107 l~D~d~~VR~~aA~~l~-------~--------~~L~~L~~D~d~~VR~~aA~~-------l~~--------~~l~~l~~  156 (244)
T 1lrv_A          107 MFDEDREVRITVADRLP-------L--------EQLEQMAADRDYLVRAYVVQR-------IPP--------GRLFRFMR  156 (244)
T ss_dssp             TTCSCHHHHHHHHHHSC-------T--------GGGGGGTTCSSHHHHHHHHHH-------SCG--------GGGGGTTT
T ss_pred             HcCCCHHHHHHHHHhCC-------H--------HHHHHHHcCCCHHHHHHHHHh-------cCH--------HHHHHHHc
Confidence            77777777777776541       0        113344677777777777652       122        12345667


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCC
Q 007842          447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  526 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~  526 (587)
                      |+++.||..++..       .+.        +.+..+++|++|.||..++..+       +.        +.+..+++|+
T Consensus       157 D~d~~VR~~aa~~-------l~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~  206 (244)
T 1lrv_A          157 DEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDP  206 (244)
T ss_dssp             CSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHc-------CCH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCC
Confidence            7778887777664       121        2233566777888887777642       11        3466667788


Q ss_pred             ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007842          527 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  578 (587)
Q Consensus       527 ~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~  578 (587)
                      ++.||..++..++               .+.+..| .|+++.||..|..+|+
T Consensus       207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            8888888777754               2455556 8888888887776654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.35  E-value=1.7e-10  Score=121.29  Aligned_cols=281  Identities=14%  Similarity=0.189  Sum_probs=215.3

Q ss_pred             HHHHHHhHHHHHhhh-CHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----hhHHHHhHHHHHHHhhcCCC
Q 007842          297 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       297 r~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~  371 (587)
                      +..++..+..+...- +.......++..+.+.+.++...  ..++.++..++...+    .+.+.-.++|.++..+.|..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~  108 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD  108 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence            455555565554421 11111125677788888877555  888888888886663    34454457899999999999


Q ss_pred             hHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh---hHHHHHHHHHHhcCC
Q 007842          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQD  447 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d  447 (587)
                      ..||.+|..+...+...+.+... ..++|.+...+.+. .|..+.+++..++.++... ++.   ..+.++|.+-..+.|
T Consensus       109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d  186 (986)
T 2iw3_A          109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWD  186 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhccc
Confidence            99999999999999999988776 78899999887654 6999999999999999765 333   346789999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHh--hcccChHHHHhhHHHHHHhhcCC
Q 007842          448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVINASKD  525 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l--~~~~~~~~~~~~il~~l~~~l~d  525 (587)
                      ..++|+.+|..++..++..+++.. .+.++|.+.+.+.+|+. + ..++..|+..  ...+.. .....+.|.|.+.+++
T Consensus       187 ~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~-~~l~~~~p~l~r~l~~  262 (986)
T 2iw3_A          187 TKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTP-ATLSIMVPLLSRGLNE  262 (986)
T ss_dssp             SSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCH-HHHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecc-hhHHHHHHHHHhhhcc
Confidence            999999999999999998887653 45689999999999854 2 2223333332  122222 2467788999999999


Q ss_pred             CChhHHHHHHHHHHHhhhhhchH----HHHhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          526 RVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       526 ~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~-l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      +...++..++-.+.+|+.-+...    .|...++|.+.+ .-+-.||++|..+.+|+..+.+..+
T Consensus       263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999877554    677888899988 4567799999999999999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.32  E-value=3.2e-09  Score=111.88  Aligned_cols=256  Identities=14%  Similarity=0.183  Sum_probs=201.6

Q ss_pred             hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH
Q 007842          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL  315 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  315 (587)
                      ..+...+.+...+....  ..|+..++.++...+...    +.-.++|.+...+.|....||.+|..+...+...+++..
T Consensus        53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            35778888888887555  888899999987665421    112467888888999999999999999999999998876


Q ss_pred             HHHhHhHHHHHhccCC-cHHHHHHHHHHHHccccccchh--HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh
Q 007842          316 AIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       316 ~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (587)
                      . ..++|.+...+.+. .|+.+.+++..+..++...+..  ..++.++|.+...+.|.-++|..++..++..++..+++.
T Consensus       131 ~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~  209 (986)
T 2iw3_A          131 I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK  209 (986)
T ss_dssp             H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred             H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence            5 78889888887655 6999999999999998765432  246789999999999999999999999999999999988


Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-C---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007842          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-G---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (587)
Q Consensus       393 ~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  468 (587)
                      .+ ...+|.+.+.+.+++.     .-++++.++... -   .......+.|++...|.+....++..++-.+.++++...
T Consensus       210 d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~  283 (986)
T 2iw3_A          210 DI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE  283 (986)
T ss_dssp             TT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred             ch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence            76 6789999999998853     234444443321 0   111235689999999999999999999999999998665


Q ss_pred             hH----HHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhc
Q 007842          469 PE----WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAP  504 (587)
Q Consensus       469 ~~----~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~  504 (587)
                      ..    .|.+.++|.+..... -+++.+|..+-+++..+..
T Consensus       284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            43    366778888876543 4588999999999888854

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.30  E-value=1.4e-10  Score=102.76  Aligned_cols=184  Identities=16%  Similarity=0.126  Sum_probs=110.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh
Q 007842          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  433 (587)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~  433 (587)
                      .|.+..+++++++++|..++.+|..++..-..   .......+|.+.+++.++++.+|..++.+++.++..-.   ....
T Consensus        14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (210)
T 4db6_A           14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            34444445555555555555555544421110   01112344555555555555555555555555442110   0011


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH-
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-  509 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~-  509 (587)
                      ....+|.+..++.+++..+|..|+.++++++.....   .......+|.+.+++.+++..+|..++.++++++...... 
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  173 (210)
T 4db6_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK  173 (210)
T ss_dssp             HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence            122467777777888888888888888887642111   1123557888888888888888999999888887642211 


Q ss_pred             --HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q 007842          510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       510 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  543 (587)
                        ......++.+.++++++++.+|..++.+|..++.
T Consensus       174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence              1234678888999999999999999999988753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.27  E-value=7.9e-09  Score=82.92  Aligned_cols=215  Identities=17%  Similarity=0.159  Sum_probs=147.2

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhChhhhHH
Q 007842          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD  435 (587)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~  435 (587)
                      ..++..+...+.|+-+.|+.+|+..+..+......  ..+.++..+..+ -+++.-...+.+...+|.++.. .++. ..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-VK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-HH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-HH
Confidence            34556666667777677777777777766655431  123333333333 3455555666677777777664 3333 34


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhH
Q 007842          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL  515 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i  515 (587)
                      .++|.++.-..=.++.+|.....+|+.+...+..  ....+...+..++.++|..-|.+++.+++.++... .+ +..-+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~-yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FK-YVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HH-HHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-cc-ccCcc
Confidence            5778887777767888899888999988876433  33455666777888899888999999988887632 22 45667


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       516 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      +|-+..++.|.+..||..++++|+.++...+.  +...+...+.+ .+|+...|......+|+++.-
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999998876432  32333333333 488888999999999988764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.23  E-value=2e-09  Score=101.99  Aligned_cols=216  Identities=12%  Similarity=0.057  Sum_probs=156.3

Q ss_pred             cHHHHHHHHHHHHccccccc--hhHH--HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hh-HHhhHHHHHH
Q 007842          332 SQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIV  403 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~  403 (587)
                      ++.+|..++.+|.+++..-.  +..+  ..-.+|.+..++.+++++++..++.+|..++..-+.   .. .....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46789999999998875432  1122  124589999999998999999999999988753111   11 1235678888


Q ss_pred             HH-hcCCChHHHHHHHHHHHHHHHhh-C-hhhh--HHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHh--ChHH-
Q 007842          404 EL-AEDRHWRVRLAIIEYIPLLASQL-G-VGFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW-  471 (587)
Q Consensus       404 ~~-~~~~~~~vR~~~~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~-  471 (587)
                      ++ ..+.+..++..++.++..++... + ...+  ....+|.+..++.+.+.    .++..|+.+|..+....  +.+. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            85 56678888888888888887522 1 1112  23467888888876543    58999999999888621  2221 


Q ss_pred             ---HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          472 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 ---~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                         .....+|.+.+++.+++..++..|+.+|.+++.....   .......+|.+.++++++++.+|..++.+|.++...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence               2245789999999999999999999999999842111   1124567999999999999999999999999998764


Q ss_pred             ch
Q 007842          546 DQ  547 (587)
Q Consensus       546 ~~  547 (587)
                      +.
T Consensus       337 ~~  338 (354)
T 3nmw_A          337 PA  338 (354)
T ss_dssp             CG
T ss_pred             HH
Confidence            33

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.21  E-value=1.2e-09  Score=103.64  Aligned_cols=213  Identities=10%  Similarity=-0.004  Sum_probs=158.5

Q ss_pred             ChHHHHHHHHhhhhhhhhhc-hhh-H--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhh-HHHHHHHHH
Q 007842          371 FPDVRLNIISKLDQVNQVIG-IDL-L--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF-DDKLGALCM  442 (587)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~-~~~-~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~  442 (587)
                      ++.++..|+.+|..++..-. ... +  ....+|.+..++.+++..++..++.++..++..-.   ...+ ....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46799999999999985432 221 2  23569999999999999999999999999875311   1111 223577788


Q ss_pred             Hh-cCCCchHHHHHHHHHHHHHHHHh---ChHHH-hhhhHHHHHhhccCCch----hHHHHHHHHHHHhhcc--cChHH-
Q 007842          443 QW-LQDKVYSIRDAAANNLKRLAEEF---GPEWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI-  510 (587)
Q Consensus       443 ~~-l~d~~~~vr~~a~~~l~~l~~~~---~~~~~-~~~l~~~l~~~l~d~~~----~~R~~a~~~l~~l~~~--~~~~~-  510 (587)
                      .+ +.+.+..++..|+.++.++....   ..... ....+|.+.+++.+++.    .++..++.+|.+++..  .+.+. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 46678899999999999987522   12222 35688999998876643    5899999999998752  12221 


Q ss_pred             ---HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          511 ---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       511 ---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                         .....+|.++.++++++..++..++.+|.+++..-..   .......+|.|.+++.+.+..+|..|+.||..|...
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence               2345799999999999999999999999999843211   133456799999999999999999999999998763

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.19  E-value=2.3e-10  Score=105.86  Aligned_cols=182  Identities=16%  Similarity=0.161  Sum_probs=137.1

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhh-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH---
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---  471 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  471 (587)
                      +.+-+.+++|..|..+++.+..+.........       ...+.+.+-..+.|.+..|...++.++..++..++...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            45678899999999999988877654322111       11234566778899999999999999999987655321   


Q ss_pred             -----HhhhhHHHHHh-hccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          472 -----AMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 -----~~~~l~~~l~~-~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                           ....++|.+++ .+.|+...+|..++.++..++...+..   ..+++.+...+++++|.+|..++.+|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 23567787776 478889999999999998887654432   456778888999999999999999999998877


Q ss_pred             chH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          546 DQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       546 ~~~-----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      |..     .....+++.+..+++|+|++||..|..++..+..++|.
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            653     33455677778888999999999999999999998874

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.18  E-value=1.1e-07  Score=105.63  Aligned_cols=487  Identities=13%  Similarity=0.066  Sum_probs=270.7

Q ss_pred             hHHHHhhhhc-chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh-cCCCCcchhhHHhhhHhh----cCCCChHH
Q 007842           87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGEWFTARVSACGLFHIA----YPSAPDIL  160 (587)
Q Consensus        87 l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~~~~~~~r~~a~~~l~~~----~~~~~~~~  160 (587)
                      +...+..... +.+..+|+.|...|.++-+.-+      .+......+. .+.+..+|..|...+...    +..++++.
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~   86 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLE   86 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence            4444444333 2366788888888877644321      1222222233 334566777777666543    24456654


Q ss_pred             HHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842          161 KTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       161 ~~~l~~~l~~l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      +..+...+..++.       +..+.||..++.++..++..--+ ..++.+++.+.++++. ++..+..+..+|..+.+.+
T Consensus        87 k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev  164 (1204)
T 3a6p_A           87 KVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV  164 (1204)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            4444444443321       14689999999999999988544 3457777777777765 4456778888888886542


Q ss_pred             Ch------h----------hhhhchHHHHHHhccC-------------------CcHHHHHHHHHHHHHHHHHhCCCcc-
Q 007842          234 EP------Q----------DCVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT-  277 (587)
Q Consensus       234 ~~------~----------~~~~~l~~~l~~~~~d-------------------~~~~vR~~a~~~l~~~~~~~~~~~~-  277 (587)
                      ..      .          ...+.+++.+.+.+++                   .+..++..+.+++..+..-.+.... 
T Consensus       165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~  244 (1204)
T 3a6p_A          165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT  244 (1204)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence            11      0          0112344444444432                   2234566666666544332221111 


Q ss_pred             --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-HHHH---HHhH----hHHHHHhc--------cCCcHHHHHHH
Q 007842          278 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELA---IQHI----LPCVKELS--------SDSSQHVRSAL  339 (587)
Q Consensus       278 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~---~~~i----~~~l~~~~--------~d~~~~vr~~a  339 (587)
                        ...+++.+..++.+  +.+|.+|+.+|..+..... ++..   ...+    +..+....        .+.+..++...
T Consensus       245 ~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l  322 (1204)
T 3a6p_A          245 AENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL  322 (1204)
T ss_dssp             TTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred             hccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence              12478888877765  5789999999999987543 2211   1111    11222221        33356677777


Q ss_pred             HHHHHccccccc----------hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc--h-h---hHHhhHHHHHH
Q 007842          340 ASVIMGMAPLLG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-D---LLSQSLLPAIV  403 (587)
Q Consensus       340 ~~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~~l~~l~  403 (587)
                      ++.+..++....          .......+++.+..+..+++..+-..++.....+.+...  . +   .+...+++.+.
T Consensus       323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~  402 (1204)
T 3a6p_A          323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASM  402 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence            777666553211          112345788999999998888888888776666655432  1 1   12233444442


Q ss_pred             HHh------cCC---------------------ChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC---------
Q 007842          404 ELA------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD---------  447 (587)
Q Consensus       404 ~~~------~~~---------------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---------  447 (587)
                      ..+      .+.                     .+..|......+..++...+ ....+.+.+.+...+.+         
T Consensus       403 ~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~  481 (1204)
T 3a6p_A          403 TNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNS  481 (1204)
T ss_dssp             HHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhccccccc
Confidence            101      100                     13456666666666665432 22233344444333322         


Q ss_pred             ----------------CchHHHHHHHHHHHHHHHHh---C-hHHHhhhhHHHHHhhc---cCCchhHHHHHHHHHHHhhc
Q 007842          448 ----------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAP  504 (587)
Q Consensus       448 ----------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l---~d~~~~~R~~a~~~l~~l~~  504 (587)
                                      +.+...++....+..+.+.+   . .+.....+.|.++..+   +..++.+|...+.+++.+..
T Consensus       482 ~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~  561 (1204)
T 3a6p_A          482 CSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFP  561 (1204)
T ss_dssp             ---------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGG
T ss_pred             ccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence                            23344555555555554433   1 0101112455555542   34578899999999999887


Q ss_pred             ccCh-HHHHhhHHHHHHhhcCC------------CChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCC---CC
Q 007842          505 VMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED---PD  566 (587)
Q Consensus       505 ~~~~-~~~~~~il~~l~~~l~d------------~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d---~d  566 (587)
                      .+.. ..+...++..++..+.+            .+.++|..++.++..++..++..  .+.+.+...+..+...   -+
T Consensus       562 ~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~  641 (1204)
T 3a6p_A          562 FVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLT  641 (1204)
T ss_dssp             GGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSC
T ss_pred             HHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccccc
Confidence            6542 12445566666655554            24489999999999999887654  3456666666664432   23


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q 007842          567 VDVRFFATQAIQSIDHVM  584 (587)
Q Consensus       567 ~~Vr~~a~~al~~l~~~~  584 (587)
                      ..-+.....|+..++..+
T Consensus       642 ~~e~~~L~eal~~ia~~~  659 (1204)
T 3a6p_A          642 QMEKCALMEALVLISNQF  659 (1204)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            455666677777765443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.16  E-value=7.5e-07  Score=96.12  Aligned_cols=490  Identities=8%  Similarity=0.033  Sum_probs=275.0

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCcc---
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE---   82 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~~---   82 (587)
                      .++.++..+.+++++.|.+|-+.|..+-.  . ...+.....++..  ..++++|..++..+.+.+..    ++..+   
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~--s-p~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~  103 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE--H-PDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCEG  103 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTSSC--C-SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHc--C-chHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence            57889999999999999999988865421  1 2234334444432  34678888888888665442    22111   


Q ss_pred             hHhhhHHHHhhhhcc-----hhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCC--
Q 007842           83 HAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--  155 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~--  155 (587)
                      ....++..+.+...+     .++.++.....++..+++..-|+. +..+++-+.+...+. ...+...+.++..+.+.  
T Consensus       104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~  181 (1073)
T 3gjx_A          104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVF  181 (1073)
T ss_dssp             HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHH
Confidence            223455555444333     257788999999999988865554 444555444444321 12222233333332221  


Q ss_pred             ------CChH-----------HHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhccch-hhhHHHHHH-HHhhhCCc
Q 007842          156 ------APDI-----------LKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIF-EDLTQDDQ  215 (587)
Q Consensus       156 ------~~~~-----------~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l-~~l~~d~~  215 (587)
                            .+..           ....+++++...+ ...++.+...+.++++.+.+.++-.. ..+.+++.+ ..+++  +
T Consensus       182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~  259 (1073)
T 3gjx_A          182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--V  259 (1073)
T ss_dssp             TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--S
T ss_pred             hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--C
Confidence                  1110           1134555555544 34578888899999999999885433 234567765 35543  4


Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhch---H----HHHHHhc-------------cCCcHHHHHHHHHHHHHHHHHhCC-
Q 007842          216 DSVRLLAVEGCAALGKLLEPQDCVAHI---L----PVIVNFS-------------QDKSWRVRYMVANQLYELCEAVGP-  274 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l---~----~~l~~~~-------------~d~~~~vR~~a~~~l~~~~~~~~~-  274 (587)
                      +..|..|+++|..+...-.++ +.+.+   +    ..+...+             ++.+...=...++.+..+++.... 
T Consensus       260 ~~~r~aA~dcL~eIv~k~~~~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l  338 (1073)
T 3gjx_A          260 PMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL  338 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCSGG-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999987642211 11111   1    1111111             222222222334444444432211 


Q ss_pred             ---C-ccccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---------------------------HHHHhH
Q 007842          275 ---E-PTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---------------------------LAIQHI  320 (587)
Q Consensus       275 ---~-~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------------------------~~~~~i  320 (587)
                         . .....   .+..+..+..-++.++-+.++.....+...+-.+                           .+...+
T Consensus       339 Ie~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L  418 (1073)
T 3gjx_A          339 LEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV  418 (1073)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHH
T ss_pred             HhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHH
Confidence               1 11111   2333455556667888888887776665533111                           111222


Q ss_pred             hHHHHHhcc---------------------CCcH-HHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcC--CChHHHH
Q 007842          321 LPCVKELSS---------------------DSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRL  376 (587)
Q Consensus       321 ~~~l~~~~~---------------------d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~  376 (587)
                      ...+...+.                     |.+. .++...-.++..+. .++.+.....+.+.+.+.+..  .+...+.
T Consensus       419 ~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~le  497 (1073)
T 3gjx_A          419 RLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLN  497 (1073)
T ss_dssp             HHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHH
T ss_pred             HHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHh
Confidence            222222221                     1111 12223333333332 233445555666666655543  4588999


Q ss_pred             HHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHhhC-hhhhHHHHHHHHHHhcCC
Q 007842          377 NIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQD  447 (587)
Q Consensus       377 ~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~-----~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d  447 (587)
                      +++.+++.++.....   +.+.+.+++.+..+.+.+     ...++..++-.+|...+-+. ...+.+.++..++..+.+
T Consensus       498 a~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~  577 (1073)
T 3gjx_A          498 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHE  577 (1073)
T ss_dssp             HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhc
Confidence            999999999877663   245567777777776544     23455555556666554432 122345567777788899


Q ss_pred             CchHHHHHHHHHHHHHHHHhChHH----------HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH
Q 007842          448 KVYSIRDAAANNLKRLAEEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~  510 (587)
                      ++..|+.+|+.++..+++..+..+          +.+.++..+.....+-..+-.....++++.++...+.+.
T Consensus       578 ~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~  650 (1073)
T 3gjx_A          578 THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT  650 (1073)
T ss_dssp             CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999877653          223334333344444466777888899999998888643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.16  E-value=4e-09  Score=93.64  Aligned_cols=176  Identities=15%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             HhcCCChHHHHHHHHHHHHHHHhhChhhhH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH------Hhhhh
Q 007842          405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW------AMQHI  476 (587)
Q Consensus       405 ~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l  476 (587)
                      .+-+++|+.|..+++.+.........+.+.  +-+.+.+--.+.|++..|-..++..+..++..++...      -...+
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~  133 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF  133 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            344556666666666665554432211111  1122222222346677777777777777665543321      12456


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHH-
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR-  555 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~-  555 (587)
                      +|.+.+-+.|+...+|..+-.++..+....++    ..+++.+.+.++++++.+|..++..++.+.+.+|...  ...+ 
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~  207 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS  207 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence            67777777777777777777776666654444    3455666666677777777777777777777666552  2345 


Q ss_pred             --HHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 007842          556 --PCLVELTEDPDVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       556 --~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~~  586 (587)
                        |.+.++++|+|.+||..|..++..+..++|+
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence              6677777777777777777777777766664

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.15  E-value=1.1e-06  Score=94.84  Aligned_cols=480  Identities=8%  Similarity=-0.002  Sum_probs=267.5

Q ss_pred             CCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhh----cChh---hHHhhHHHHH
Q 007842           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLV  130 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~----~~~~---~~~~~l~~~l  130 (587)
                      +.+++.|..+-+.|..+-.   .++.+.....+|   ..+.++.+|..|+..|......    ++++   .+++.++.++
T Consensus        39 ~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l  112 (1073)
T 3gjx_A           39 HGEGAQQRMAQEVLTHLKE---HPDAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI  112 (1073)
T ss_dssp             CSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc---CchHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence            4456677777777877754   233333332222   2345889999999999987663    4543   3567788888


Q ss_pred             HHHhcCC-----CCcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc--------
Q 007842          131 KRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--------  197 (587)
Q Consensus       131 ~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--------  197 (587)
                      .+...++     ....+...+.++..++.+.-++....+++-+..+++. ++..+...+..|..+.+.+..-        
T Consensus       113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~  191 (1073)
T 3gjx_A          113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQV  191 (1073)
T ss_dssp             HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHH
T ss_pred             HHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence            7765442     1223333333443333221111122233333333332 3455566666666666553210        


Q ss_pred             ----------hhhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcChhh-hhhchHHHH-HHhccCCcHHHHHHHHHH
Q 007842          198 ----------HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVI-VNFSQDKSWRVRYMVANQ  264 (587)
Q Consensus       198 ----------~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l-~~~~~d~~~~vR~~a~~~  264 (587)
                                ...+.+++++...+. ..++.+...++++++...+.++-+. ..+.+++.+ ...++  ++..|..|+++
T Consensus       192 r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dc  269 (1073)
T 3gjx_A          192 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKC  269 (1073)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHH
Confidence                      012445555555553 3466778889999999998887643 245577776 46664  46799999999


Q ss_pred             HHHHHHHhCCCccccchHHHH-------HHhc-------------CCChHHHHHHHHHhHHHHHhhhCH------H--HH
Q 007842          265 LYELCEAVGPEPTRMDLVPAY-------VRLL-------------RDNEAEVRIAAAGKVTKFCRILNP------E--LA  316 (587)
Q Consensus       265 l~~~~~~~~~~~~~~~l~~~l-------~~~l-------------~d~~~~vr~~a~~~l~~l~~~~~~------~--~~  316 (587)
                      +..++.. ..+.....+...+       ...+             .+.+.+.-...+..+..+++....      +  ..
T Consensus       270 L~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~  348 (1073)
T 3gjx_A          270 LTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA  348 (1073)
T ss_dssp             HHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            9998864 1111111111111       1111             223333333333344433332111      1  11


Q ss_pred             HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---------------------------hHHHHhHHHHHHHhhcC
Q 007842          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---------------------------DATIEQLLPIFLSLLKD  369 (587)
Q Consensus       317 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------------------------~~~~~~l~~~l~~~l~d  369 (587)
                      ....+.++..+...++.++-..+...+..+...+-.                           ..+...+...+...+.-
T Consensus       349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~  428 (1073)
T 3gjx_A          349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK  428 (1073)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence            222344455566666777766666555444332210                           01122333333333321


Q ss_pred             C---------C-----------h--HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 007842          370 E---------F-----------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       370 ~---------~-----------~--~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~vR~~~~~~l~~l~  425 (587)
                      +         +           .  +.+...-.++..+ ..++.+.....+++.+.+.+.  ..+|..+.+++-+++.++
T Consensus       429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa  507 (1073)
T 3gjx_A          429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS  507 (1073)
T ss_dssp             SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred             CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence            1         0           0  1111222222222 234444444556666665443  346999999999999998


Q ss_pred             HhhChh---hhHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhccCCchhHHHHHH
Q 007842          426 SQLGVG---FFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       426 ~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~~R~~a~  496 (587)
                      ..+..+   .+.+.+++.+..+...+     ..-++...+-++|...+.+... .+.+.++..+++.+.+++..++.+|+
T Consensus       508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~  587 (1073)
T 3gjx_A          508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC  587 (1073)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred             CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            766532   35566777777666433     2334554556777776654322 25577888888888999999999999


Q ss_pred             HHHHHhhcccChHH----------HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          497 RAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       497 ~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      .++..++..++...          +...++..+.....+=.+.-.....++++.++...+.+
T Consensus       588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence            99999998776542          34445555555555657777888999999998887764

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.14  E-value=4.4e-07  Score=100.96  Aligned_cols=508  Identities=10%  Similarity=0.027  Sum_probs=279.1

Q ss_pred             cccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhcccccc----CCCc
Q 007842            8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV   81 (587)
Q Consensus         8 ~~~~~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~----~~~~   81 (587)
                      +..+..+++.+.++  +.+.|.+|-..|..+...-  + .+..+.-.+. ..+.+.++|..++..+.+.+..    +. .
T Consensus        10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~-~   84 (1204)
T 3a6p_A           10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS-R   84 (1204)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC-H
T ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC-H
Confidence            33477777777776  7788999998887753321  1 1212222222 1234668888888777665431    22 1


Q ss_pred             chHh----hhHHHHhhhhc---chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcC
Q 007842           82 EHAH----VLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (587)
Q Consensus        82 ~~~~----~l~~~l~~l~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (587)
                      +...    .+++.+.+...   +..+.+|.....++..+++..-++. +..+++.+.++..++ ...+..++.++..+.+
T Consensus        85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~E  162 (1204)
T 3a6p_A           85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQG-ETQTELVMFILLRLAE  162 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence            2222    33333322211   1468999999999999998866643 566777777766553 2334445555544422


Q ss_pred             C------CChHH-----------HHHHHHHHHHhcCC-------------------CChHHHHHHHHhHHHHHHhhccch
Q 007842          155 S------APDIL-----------KTELRSIYTQLCQD-------------------DMPMVRRSAASNLGKFAATVEPAH  198 (587)
Q Consensus       155 ~------~~~~~-----------~~~l~~~l~~l~~d-------------------~~~~vr~~~~~~l~~l~~~~~~~~  198 (587)
                      .      .....           ...+++.+...+++                   .+..++..+.+++..+...++...
T Consensus       163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~  242 (1204)
T 3a6p_A          163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH  242 (1204)
T ss_dssp             HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred             HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence            1      11111           12445555444432                   234466677777766655543222


Q ss_pred             hh---hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcC-hhh---hhhch----H-HHHHHhc-------cCCcHHHHH
Q 007842          199 LK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQD---CVAHI----L-PVIVNFS-------QDKSWRVRY  259 (587)
Q Consensus       199 ~~---~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l----~-~~l~~~~-------~d~~~~vR~  259 (587)
                      ..   ..+++.+..++.+  +.+|..|+++|..+...-. ++.   ....+    + .++....       +|.+..+++
T Consensus       243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k  320 (1204)
T 3a6p_A          243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK  320 (1204)
T ss_dssp             HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence            21   2477777666654  5689999999999887542 221   11111    1 1222211       333556777


Q ss_pred             HHHHHHHHHHHHhC----------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--H-H---HHHHhHhHH
Q 007842          260 MVANQLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---LAIQHILPC  323 (587)
Q Consensus       260 ~a~~~l~~~~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~i~~~  323 (587)
                      ..++.+..++..+.          .......+++.+..++.+++..+-..++.....+.+...  . +   .+...+++.
T Consensus       321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v  400 (1204)
T 3a6p_A          321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA  400 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            77777666653221          112234688889999998888888888877776665431  1 1   234445555


Q ss_pred             HHH---hccCC-----------------c-------HHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCC------
Q 007842          324 VKE---LSSDS-----------------S-------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE------  370 (587)
Q Consensus       324 l~~---~~~d~-----------------~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------  370 (587)
                      +..   -+.-+                 +       +..|......+..++...+. .....+.+.+...+.+.      
T Consensus       401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~  479 (1204)
T 3a6p_A          401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSV  479 (1204)
T ss_dssp             HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC------
T ss_pred             HHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhccccc
Confidence            411   11100                 0       24566666666666654433 23445555554443321      


Q ss_pred             -----------------ChH--HHHHHHHhhhhhhhhh---c-hhhHHhhHHHHHHHH-h--cCCChHHHHHHHHHHHHH
Q 007842          371 -----------------FPD--VRLNIISKLDQVNQVI---G-IDLLSQSLLPAIVEL-A--EDRHWRVRLAIIEYIPLL  424 (587)
Q Consensus       371 -----------------~~~--vr~~a~~~l~~l~~~~---~-~~~~~~~~l~~l~~~-~--~~~~~~vR~~~~~~l~~l  424 (587)
                                       ++.  ...+....+..+...+   . .+.....+.|.+.+. +  +..++.+|...+..++.+
T Consensus       480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l  559 (1204)
T 3a6p_A          480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSAL  559 (1204)
T ss_dssp             -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence                             111  1222233333333222   1 111111234444443 2  346888999999999887


Q ss_pred             HHhhC-hhhhHHHHHHHHHHhcCC------------CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--
Q 007842          425 ASQLG-VGFFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--  487 (587)
Q Consensus       425 ~~~~~-~~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--  487 (587)
                      ...+. ...+.+.++..++..+.+            .+.+||.+|+.++..++..++...  +.+.+...+..++...  
T Consensus       560 ~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~  639 (1204)
T 3a6p_A          560 FPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELL  639 (1204)
T ss_dssp             GGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTT
T ss_pred             HHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccc
Confidence            76653 223455566666666655            355899999999999998776543  2345555555555432  


Q ss_pred             -chhHHHHHHHHHHHhhcccChHH----HHhhHHHHHHhhcCC
Q 007842          488 -HYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD  525 (587)
Q Consensus       488 -~~~~R~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d  525 (587)
                       ...-+.....+++.++..+++..    +...+++.+.....+
T Consensus       640 l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~  682 (1204)
T 3a6p_A          640 LTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS  682 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence             35667777788888766554432    355566666666654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.12  E-value=1.3e-08  Score=85.70  Aligned_cols=223  Identities=13%  Similarity=0.119  Sum_probs=178.4

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhh
Q 007842          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF  432 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~  432 (587)
                      ..+..+.+++.|.++.++..++.++..+.+.....   ...+.++|.+..++.+++.++-..+++++..+....+  ++.
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            35677888999999999999999999999875321   2347789999999999999999999999999987754  444


Q ss_pred             hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHH
Q 007842          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC  512 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~  512 (587)
                      | ..+...+...+++++.-.+..|+..++.+ +...   ....+...+..++.++|.+++.+++.++.+++...+.....
T Consensus       113 y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          113 F-LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             H-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             H-HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            3 45788888899999999999999999988 2221   23567778888888999999999999999999887766667


Q ss_pred             hhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHhhc
Q 007842          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       513 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      +.++..+-.+++++++.++..++.++..+...--.+   .-...+...+..+. -...|.+|..|...-+.+...++
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~~~  264 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVIS  264 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhc
Confidence            778888888999999999999999999998652222   22245566667776 78889999999988888776543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.11  E-value=4.9e-09  Score=96.55  Aligned_cols=171  Identities=17%  Similarity=0.142  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHhhC--hhhhHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhcc-
Q 007842          413 VRLAIIEYIPLLASQLG--VGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN-  485 (587)
Q Consensus       413 vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-  485 (587)
                      .|..++..+..++....  ..+.....+|.++. ++.+++..||..|+.+|+.++....   ........+|.|..++. 
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            44455555555544321  11112224577777 8888899999999999998875321   11233467888888877 


Q ss_pred             CCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---HHHHhhHHHHHH
Q 007842          486 NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLV  559 (587)
Q Consensus       486 d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~  559 (587)
                      +++..+|..|+++|++++.....   .+.....+|.+..+++++++.+|..++.+|..++.....   ......++|.|.
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv  215 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV  215 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence            45788999999999998764332   223356888899988888999999999999998765221   134456888888


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHh
Q 007842          560 ELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       560 ~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      .++.+++.+||..|..+|+.|.+.
T Consensus       216 ~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          216 ALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHcCCChhHHHHHHHHHHHHHhC
Confidence            888888999999999999888653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.09  E-value=2.1e-09  Score=102.19  Aligned_cols=256  Identities=12%  Similarity=0.057  Sum_probs=171.7

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchH
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  243 (587)
                      +.+.+..-+-|+.|++|.+|+.+|..+....+...-..        -..+.+-.+|..++-++..+++..++.       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            66667766778899999999999999998865311111        011123355666666665555544322       


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHH
Q 007842          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~  323 (587)
                               .-..||+.+++++|.+ .+++++   ..++..++..+..+.|+||.+++-.+..+...+..   .+.+++.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                     2347999999999998 777765   34555555666778899999999988887444443   5778899


Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCC--hHHHHHHHHhhhhhhhhhchhhHHhhHHHH
Q 007842          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  401 (587)
                      +...+.|.+.+||..|+.++..++   .+ ...+.++..+...|.+.+  ..-..+.+..|+.++..-......+.++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            999999999999999999998888   11 224556666666655431  222333444555544322111112467888


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       402 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      +..++.+.-..||.++++++..+.   .    .+.+--++.+++-+++.+|+..+..++.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL---~----~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS---E----ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC---C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH---h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            888899999999999999886654   1    1223334566778899999999999885

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.09  E-value=1.9e-09  Score=100.69  Aligned_cols=286  Identities=12%  Similarity=0.025  Sum_probs=145.7

Q ss_pred             hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 007842          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  318 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  318 (587)
                      ...+++-+.++++.++...|+.+.-.+..++.. .++ .. -..+.+.+-++|+++-+|-.|+++++.+..    ....+
T Consensus        66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~  138 (355)
T 3tjz_B           66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQ  138 (355)
T ss_dssp             HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHH
Confidence            345667777888888888998888888776654 222 11 467777888888889999998888888754    23446


Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      .+.+.+.+.+.|+++.||.+|+-+...+....+.  ..+.+++.+..++.|.++.|...|+..+..+...- ... ...+
T Consensus       139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a-~~kL  214 (355)
T 3tjz_B          139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLA-VSKM  214 (355)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHH-HHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHH-HHHH
Confidence            7788888899999999999988887776654322  34567888888888988888888888888776531 111 1223


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      ++.+.+. .-.++......++.+..+...- .+...+.+.+.+..+++..+..|...|+.++-.+.. .+... .....+
T Consensus       215 v~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~-~~~a~~  290 (355)
T 3tjz_B          215 ISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE-LAPAVS  290 (355)
T ss_dssp             HHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCC
T ss_pred             HHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH-HHHHHH
Confidence            3332211 0112222222333222222110 012345577777778888888888888888777654 22111 122334


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  541 (587)
                      .+..++.+++..+|..++..+..+....+.  .....-..+..+++|++..++.-|+.+|...
T Consensus       291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt  351 (355)
T 3tjz_B          291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT  351 (355)
T ss_dssp             THHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence            444456667777888888887777764332  2334555677777787777777777666543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.08  E-value=4.4e-09  Score=98.26  Aligned_cols=291  Identities=13%  Similarity=0.034  Sum_probs=167.2

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc
Q 007842          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      ++++......++.-+..++.+++...|+.+.-.+..+++.  +++.. ...+.+.+-++++++.+|-.|+.+++.+..  
T Consensus        59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--  133 (355)
T 3tjz_B           59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--  133 (355)
T ss_dssp             CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence            3444444456777778899999999999988888877776  23333 667788888899999999999999988754  


Q ss_pred             ChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        ....+.+.+.+.+.+.|.++.||+.|+-+...+....+ +. ...+++.+..++.|.++.|...|+..+..+... +.
T Consensus       134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~  208 (355)
T 3tjz_B          134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR  208 (355)
T ss_dssp             --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred             --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence              22567889999999999999999999999887764322 22 235788888899999999998888888888753 22


Q ss_pred             HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhh
Q 007842          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (587)
Q Consensus       314 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (587)
                      . ...++++.+... .-.++......+..+..++..- .......+.+.+...+++.++.|...+++++..+.. .+...
T Consensus       209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~  284 (355)
T 3tjz_B          209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE  284 (355)
T ss_dssp             H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred             H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence            1 223444444331 1124555555666665554321 012345788888999999999999999999988755 22222


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       394 ~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                       .....+.+..++.++++.+|..++..+..+....+ +. ....-.-+..+++|++..++.-|+.+|-
T Consensus       285 -~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~-v~~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          285 -LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SA-VTACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred             -HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HH-HHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence             13344556667788888999999999988876532 22 2234455677889999998888877654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.07  E-value=2.6e-08  Score=88.46  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh------hhHHHH
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDKL  437 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l  437 (587)
                      .+-+.+..-|..++..|....+....+.+  .+.+++-+.-.+.|.|..+-..+++.+..+...++..      .-...+
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~  133 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF  133 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            33344556666666666554433221110  1112232222334778888888888888877655322      113568


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHH-
Q 007842          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL-  516 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il-  516 (587)
                      +|.++.-++|+...||..+-..+..+...+++.    .+++.+.+.+++.||++|..++..++.+.+..|..  ....+ 
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~  207 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLS  207 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGC
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cccccc
Confidence            899999999999999999999998888877654    46777878889999999999999999999988876  24567 


Q ss_pred             --HHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH
Q 007842          517 --PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  550 (587)
Q Consensus       517 --~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~  550 (587)
                        |.+.+++.|++.+||.+|+.++..+....|+..+
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence              9999999999999999999999999988876533

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.06  E-value=2.5e-08  Score=91.82  Aligned_cols=172  Identities=10%  Similarity=0.030  Sum_probs=131.2

Q ss_pred             HHHHHHHHhhhhhhhhhchhh--HHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcC
Q 007842          373 DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQ  446 (587)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~  446 (587)
                      +-|..|+..|..++.......  .....+|.+.. ++.+++..+|..++.+++.++..-.   ........+|.++.++.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            467777888888776554321  22356788888 9999999999999999999886321   11122346777888887


Q ss_pred             -CCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHH
Q 007842          447 -DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV  519 (587)
Q Consensus       447 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l  519 (587)
                       +++..+|..|+.+|+.++.....   .+.....+|.+..++.+++..+|..++++|++++.....   ......++|.+
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             46889999999999999864322   233456899999999999999999999999999865221   22356789999


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ..++.++++.+|..++.+|+++...
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999876

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.04  E-value=1.1e-07  Score=76.53  Aligned_cols=216  Identities=17%  Similarity=0.176  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhh
Q 007842          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (587)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (587)
                      -++++.-+..++.|+-|.||+.+...+..+++..+ +.+.+.+-.++.-+-+++.-..-......++.++..-| + ...
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v~  106 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LVK  106 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HHH
Confidence            35666777777888888888888888888877652 23333333333333455544444455666777665433 2 244


Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhH
Q 007842          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  320 (587)
                      .++|.+..-..-.+++.|.....+++.++...+.-  ...+..-+..++.|++..=|.+++..++.+++.- . .+....
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCcc
Confidence            56777766555557888888888888888752211  1234445566777877777777777776665531 1 233455


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 007842          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (587)
                      +|.+..++.|.+.-||.++.++++.++..-++   ...++...++-++|.+..|.....++++.+.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            77777888888888888888888888765433   2333444455567888888777777777664

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.03  E-value=3.1e-11  Score=97.40  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      .+...+.+...++|+++.+|..|+.+|+.+.    ..    . ++.+.+.++|+++.+|..++.+++.+..        +
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCS----ST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence            3445667788889999999998888877542    21    2 4788888889999999999999988764        3


Q ss_pred             hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                      ..++.+...++|+++.||..++.+|+.+..        ...+|.|.++++|+++.||..|..+|++|
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            457788888889999999999999998753        35678888888899999999999988753

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.95  E-value=2.4e-08  Score=95.10  Aligned_cols=256  Identities=13%  Similarity=0.007  Sum_probs=165.4

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHH
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~   89 (587)
                      =++.|+..|-++.|++|.+|+-.|.++.+..|.-..+.       ...+.+--+|....-+|.+|.+++++.-       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV-------  240 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT-------  240 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee-------
Confidence            36889999999999999999999999988776432221       1112222445444556789988888532       


Q ss_pred             HHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007842           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~  169 (587)
                               -.-||+.++++|+.+ .+++++  ...+..++ .......|++|..++-.+..+.+.+..  ...+++.+.
T Consensus       241 ---------VAPVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL  305 (800)
T 3oc3_A          241 ---------VAPVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLV  305 (800)
T ss_dssp             ---------BCHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHH
T ss_pred             ---------eeehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHH
Confidence                     223899999999999 888876  22222222 344556778888877666655333322  677888888


Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCc--hhHHHHHHHHHHHHhhhcChhhhhhchHHHHH
Q 007842          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  247 (587)
Q Consensus       170 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  247 (587)
                      ..++|.+..||..++.+|..++    .+...+.++..+...+.+.+  ...-......|+.+...-......+.++|-+.
T Consensus       306 ~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~  381 (800)
T 3oc3_A          306 SLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIF  381 (800)
T ss_dssp             HHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred             hhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence            8999999999999999988888    22334445555444443322  22223344455555543322122346777777


Q ss_pred             HhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007842          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (587)
                      .++.++-..||.++++++..+.       ....+--++.+.+=+++.+++..+.+...
T Consensus       382 PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          382 PCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            7888888899999998887655       11223334455666777888888777764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.94  E-value=1.8e-08  Score=93.01  Aligned_cols=183  Identities=15%  Similarity=0.092  Sum_probs=130.1

Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccchh----HH---HHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----
Q 007842          324 VKELSSDSSQHVRSALASVIMGMAPLLGKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----  392 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----  392 (587)
                      +...+.+++|..|..+++.+..+.......    ..   ...+.+.+...+.|.|..|...++.++..++...+..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            556778899999999988877655433211    11   2234567778889999999999999998888765432    


Q ss_pred             ----hHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          393 ----LLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       393 ----~~~~~~l~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                          .....++|.+.+ .+.+....+|..+..++..++...+.   ...+.+.+...++..++.+|..++.++..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                223456776665 46888888998888888777665432   2335566777888999999999999999999888


Q ss_pred             ChHH-----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChH
Q 007842          468 GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (587)
Q Consensus       468 ~~~~-----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~  509 (587)
                      |...     ..+.+++.+...+.|++..||.+|..+++.+...+|..
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            7642     23445666667788999999999999999998888854

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.93  E-value=1.5e-07  Score=79.31  Aligned_cols=184  Identities=12%  Similarity=0.094  Sum_probs=150.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh-hh
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD  237 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~  237 (587)
                      +..+..+..+++|.++.++..+..+++.+.+..+.   ....+.+++-+..++.++++.|-..|++++..+....+. +.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34677888889999999999999999999988533   235567888888888999999999999999999887764 33


Q ss_pred             hhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH
Q 007842          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  317 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      ....+...+.....+++.-.+..++..+|.+    ..-.....+...+.+++.+.+..++.+++.++-.++..-+.....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            5667888899999999999999999999987    212224568888899999999999999999999998877655555


Q ss_pred             HhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (587)
Q Consensus       318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      +.++.-+..+++.+++.++.-+..++..+...
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            77778888888999999999999988887654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.89  E-value=1.5e-08  Score=86.57  Aligned_cols=139  Identities=20%  Similarity=0.226  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHH-hccCCcHHHHHHHHHHHHHHHHHhCCCccc
Q 007842          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (587)
Q Consensus       200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~  278 (587)
                      .+.++++...+.+++.+.||..|+..++.. .      ....+++.+.. +..|++|.||..++..++.++...++    
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----  137 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----  137 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence            467888999999999999999999988876 2      13568888887 88899999999999999999974443    


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      +..++.+...++|++..||..|...+...+...........++|.+..+..|++..||.+.+..|..++..
T Consensus       138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            34778889999999999999999886544432111222356789999999999999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.83  E-value=1.3e-09  Score=87.76  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=62.8

Q ss_pred             hHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      ...+.+..+++|+++.+|..++..++.+...        . +|.+...++|+++.||..++.+|+.+..        +..
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a   74 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA   74 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence            3345555666666666666666666555321        1 2555666666666666666666665542        233


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      +|.+...+.|+++.+|..++.+++.+.        .+..+|.+...++|+++.||..|+.+|+
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            555555556666666666666665542        1223455555666666666666666554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.74  E-value=1.4e-07  Score=80.65  Aligned_cols=136  Identities=10%  Similarity=0.117  Sum_probs=57.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  476 (587)
                      +++....+.+++...+|..++..++.. .      ..+..++.+.. +..|+.|.||+.+..+++.++...+++    ..
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~  140 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KA  140 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TT
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HH
Confidence            334444444444445555554444333 1      01234444443 334455555555555555444322222    23


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhh
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ++.+.....|+|..+|..|+..+.-.+...........++|.+..+..|++.-||.++..+|-.+++.
T Consensus       141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            44444444555555555554443221111111111234445555555555555555555555544443

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.74  E-value=7.2e-06  Score=87.91  Aligned_cols=564  Identities=8%  Similarity=-0.028  Sum_probs=296.9

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc-----CCcHHHHHHHHHHhc--cccccC-CCcc
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-----DDDDEVLLAMAEELG--VFIPYV-GGVE   82 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-----~~~~~v~~~~~~~l~--~l~~~~-~~~~   82 (587)
                      +..|++.--|.=+++|..|=..+....+.+  ...+..++|.+.+.+     +.+.+....+...|.  ++...+ .+..
T Consensus       135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~--~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~  212 (997)
T 1vsy_5          135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQL--VGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK  212 (997)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTTB--TTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence            466777777888999999988888766554  233456777666533     233445555555442  232222 3344


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcCh------------------h---------------h----HH--
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------------------S---------------D----LV--  123 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------------------~---------------~----~~--  123 (587)
                      +...+++.|......++|.|.+-+-.....+......                  +               .    ..  
T Consensus       213 ~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~  292 (997)
T 1vsy_5          213 DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSL  292 (997)
T ss_dssp             HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777776666677788877776665555542211                  0               0    00  


Q ss_pred             -hhHHHHHHHHhcC-CC--CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---
Q 007842          124 -DWYIPLVKRLAAG-EW--FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---  196 (587)
Q Consensus       124 -~~l~~~l~~l~~~-~~--~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---  196 (587)
                       ..+...+.+.+++ ..  +.....++..+..+..+.....-.+++.++.+.+.+++|.+|..+..++..+...+..   
T Consensus       293 ~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~  372 (997)
T 1vsy_5          293 LVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSD  372 (997)
T ss_dssp             HHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence             1122222233323 35  6666666666444544444344567788888999999999999999888776665210   


Q ss_pred             ---------------c----------hhhhHHHHHHH-----H-hhhCC-c----------------------hhHHHHH
Q 007842          197 ---------------A----------HLKTDIMSIFE-----D-LTQDD-Q----------------------DSVRLLA  222 (587)
Q Consensus       197 ---------------~----------~~~~~l~~~l~-----~-l~~d~-~----------------------~~vr~~a  222 (587)
                                     .          .+.+.....+.     . +.+.+ .                      ...-..+
T Consensus       373 ~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i  452 (997)
T 1vsy_5          373 YEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELEV  452 (997)
T ss_dssp             HTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHHH
T ss_pred             CCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHHH
Confidence                           0          11111111100     0 11000 0                      0001111


Q ss_pred             HHHH---------HHHhhh-----------------------------cChhhhhhchHHHHHHhccCCcHHHHHHHHHH
Q 007842          223 VEGC---------AALGKL-----------------------------LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ  264 (587)
Q Consensus       223 ~~~l---------~~l~~~-----------------------------~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~  264 (587)
                      .+.+         ..+...                             ++ ....+.+.+.+..+..|++..-.+.+++.
T Consensus       453 ~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi  531 (997)
T 1vsy_5          453 LKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDKASMIMSVEI  531 (997)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            1111         111111                             11 11345567777888888888888889999


Q ss_pred             HHHHHHHhCCC------ccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH-----------------------
Q 007842          265 LYELCEAVGPE------PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE-----------------------  314 (587)
Q Consensus       265 l~~~~~~~~~~------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----------------------  314 (587)
                      ++.+.......      .....+.|.+.+.+. +-.++....-..++..+....++.                       
T Consensus       532 ~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ss  611 (997)
T 1vsy_5          532 VAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAA  611 (997)
T ss_dssp             HHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCC
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcH
Confidence            88876543221      122357777777776 343333332222222222211110                       


Q ss_pred             -------HH--------------HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc----------------------
Q 007842          315 -------LA--------------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----------------------  351 (587)
Q Consensus       315 -------~~--------------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----------------------  351 (587)
                             .+              ...++..+.  +.++...||......+..+....-                      
T Consensus       612 f~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~  689 (997)
T 1vsy_5          612 THQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLG  689 (997)
T ss_dssp             CCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSC
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhcccccccc
Confidence                   00              012222222  567788999999888866543220                      


Q ss_pred             ------hhHHHHhHHHHHHHhhc-------C--CChHHHHHHHHhhhhhh----hhhchh------hHHhh-HHHHHHHH
Q 007842          352 ------KDATIEQLLPIFLSLLK-------D--EFPDVRLNIISKLDQVN----QVIGID------LLSQS-LLPAIVEL  405 (587)
Q Consensus       352 ------~~~~~~~l~~~l~~~l~-------d--~~~~vr~~a~~~l~~l~----~~~~~~------~~~~~-~l~~l~~~  405 (587)
                            ...+.+.+...+ .-+.       +  .....+......+..+.    ..++..      .+... ++|.+..+
T Consensus       690 ~~~~~~~~~~~~~i~~~f-~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l  768 (997)
T 1vsy_5          690 LPLKSVPEKVDAYIKKQF-EIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL  768 (997)
T ss_dssp             CCSSCCCHHHHHHHHHHH-HHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT
T ss_pred             CccccCcchHHHHHHHHH-HHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH
Confidence                  011111111111 1111       1  00001111111111111    111111      11111 44444444


Q ss_pred             hcCCCh-HHHHH-HHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHh----ChHHHhhhhHH
Q 007842          406 AEDRHW-RVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEF----GPEWAMQHITP  478 (587)
Q Consensus       406 ~~~~~~-~vR~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~  478 (587)
                      .+.++. ..... +..++..++...-+....+.++..+..... +++| +|.+++..+..+.-..    +.+ -...+..
T Consensus       769 ~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~  846 (997)
T 1vsy_5          769 VKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILE  846 (997)
T ss_dssp             SSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHH
T ss_pred             hhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHH
Confidence            444432 32222 223343333322222223334444444344 5789 9999999988776421    222 1256788


Q ss_pred             HHHhhccCCc-hhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC------------CChhHHHHHHHHHHHhhhhh
Q 007842          479 QVLEMINNPH-YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       479 ~l~~~l~d~~-~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d------------~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+..++.|+. .+||+.|..+|+.+....+.......++..+.+.+..            ++...|-+++-+|+.++..+
T Consensus       847 ~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~  926 (997)
T 1vsy_5          847 FVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF  926 (997)
T ss_dssp             HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence            8888999999 9999999999999987652311222344444444421            11257888999999998877


Q ss_pred             chH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          546 DQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       546 ~~~----~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      +.+    .+...++..|....+|+.+ |+..+.++++.+.++
T Consensus       927 Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT  967 (997)
T 1vsy_5          927 PYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV  967 (997)
T ss_dssp             SCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred             CCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence            654    4667777777777788666 999999999998764

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.71  E-value=1.3e-06  Score=93.53  Aligned_cols=387  Identities=10%  Similarity=0.019  Sum_probs=216.0

Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc------chhhhHHHHHHHHhhh-CCchhHHHHHHHHHH
Q 007842          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCA  227 (587)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~  227 (587)
                      ..++...+.+.+.+..+..+.+..-.+.+++.++.+......      +...+.+.|++...+. +-.++....-..++.
T Consensus       500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~  579 (997)
T 1vsy_5          500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAW  579 (997)
T ss_dssp             TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            344456778888899999999888999999999998776443      2456678888888887 455555544444454


Q ss_pred             HHhhhcChhhhhhchHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHH
Q 007842          228 ALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAA  301 (587)
Q Consensus       228 ~l~~~~~~~~~~~~l~~~l~~~-----~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~  301 (587)
                      .+.....+. ....++..+..+     .+..+......-+..+..+....+-.. ....++..+.  +..+...||+...
T Consensus       580 ~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig  656 (997)
T 1vsy_5          580 WLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVA  656 (997)
T ss_dssp             HHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHH
T ss_pred             HHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHH
Confidence            444443332 223344444221     111111111222333333333333110 1233444444  5667788888888


Q ss_pred             HhHHHHHhhhC----------------------------HHHHHHhH---hHHHHHhcc---C--C-----cH--HHHHH
Q 007842          302 GKVTKFCRILN----------------------------PELAIQHI---LPCVKELSS---D--S-----SQ--HVRSA  338 (587)
Q Consensus       302 ~~l~~l~~~~~----------------------------~~~~~~~i---~~~l~~~~~---d--~-----~~--~vr~~  338 (587)
                      ..|..+....-                            +..+.+.+   +..+.....   +  +     +.  ..-..
T Consensus       657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT  736 (997)
T 1vsy_5          657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST  736 (997)
T ss_dssp             HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence            88876655431                            00111111   111111111   0  1     11  11122


Q ss_pred             HHHHHHccccccch---hHHHHh-HHHHHHHhhcCCCh-HHHHH-HHHhhhhhhhhhchhhHHhhHHHHHHHHhc-CCCh
Q 007842          339 LASVIMGMAPLLGK---DATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHW  411 (587)
Q Consensus       339 a~~~l~~l~~~~~~---~~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~  411 (587)
                      ++..+.........   ..+... ++|.++++.+..+. ++... +..++..+....-.....+.++..+.+... +++|
T Consensus       737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW  816 (997)
T 1vsy_5          737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN  816 (997)
T ss_dssp             HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred             HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence            23222222111101   111222 56666666555543 44443 334444443332223333455555555555 6799


Q ss_pred             HHHHHHHHHHHHHHHh----hChhhhHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC
Q 007842          412 RVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (587)
Q Consensus       412 ~vR~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  486 (587)
                       .|..++..+..+.-.    ++.+. ...+...+..+|.|+. .+||+.|..+|+-++...+.......++..+.+.+..
T Consensus       817 -~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~  894 (997)
T 1vsy_5          817 -QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV  894 (997)
T ss_dssp             -SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence             999999988776532    13322 3567888889999999 9999999999999987542312223455555444322


Q ss_pred             ------------CchhHHHHHHHHHHHhhcccChH----HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch
Q 007842          487 ------------PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       487 ------------~~~~~R~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  547 (587)
                                  .+...|.+++-.|+.+...++-.    .+.+.++..|.+...|+.+ |+.++-++++.+-.....
T Consensus       895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D  970 (997)
T 1vsy_5          895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD  970 (997)
T ss_dssp             TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence                        12268899999999998865432    2456777888888888666 999999999998765443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.28  E-value=0.00024  Score=67.40  Aligned_cols=257  Identities=16%  Similarity=0.151  Sum_probs=129.1

Q ss_pred             ChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcH
Q 007842          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW  255 (587)
Q Consensus       176 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  255 (587)
                      ++..++.+++.+..+.+.+  +...+.-+..+..++.|++..||..|+..|..++..    ...+.+..+|.++++.+++
T Consensus        41 ~~k~K~LaaQ~I~kffk~F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHF--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGC--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            4667777777777777665  344455566666677777777777777766666654    2456667777777776666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHHHhHhHHHHHhccC
Q 007842          256 RVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSD  330 (587)
Q Consensus       256 ~vR~~a~~~l~~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d  330 (587)
                      ..+..+-++|..+...     .+.. +-..+..... .++.+|.-+++-|..-...++.+    .....+...+.+.++|
T Consensus       115 ~E~~~V~~sL~sllk~-----Dpk~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D  188 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKM-----DAKGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED  188 (507)
T ss_dssp             HHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence            6555555555555543     1111 2222222222 34567766666665444433322    2223455555666666


Q ss_pred             CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh------cCCChHHHHHHHHhh----hhhhhhhchhhHH----h
Q 007842          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKL----DQVNQVIGIDLLS----Q  396 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l----~~l~~~~~~~~~~----~  396 (587)
                      -...-=..+...+..+--. +...-.+.+++++....      .-.+.+.-...+.++    .-+........+.    .
T Consensus       189 VT~~EF~L~m~lL~~lkl~-~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~  267 (507)
T 3u0r_A          189 VTGEEFVLFMKILSGLKSL-QTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE  267 (507)
T ss_dssp             CCHHHHHHHHHHHHTSGGG-SSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcccc-cCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence            5443223333333322111 11111234555554432      112333333333333    3333333333332    3


Q ss_pred             hHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842          397 SLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       397 ~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      .++|.+..+... +....+...++.+..++...|........++.++..|
T Consensus       268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L  317 (507)
T 3u0r_A          268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL  317 (507)
T ss_dssp             HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence            344443333221 1223666788888888888773333444555555444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.24  E-value=0.00056  Score=68.17  Aligned_cols=326  Identities=13%  Similarity=0.144  Sum_probs=179.9

Q ss_pred             HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhccchhhhH-HHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcChh
Q 007842          160 LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD-IMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ  236 (587)
Q Consensus       160 ~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      ...+.++.|. .+.+..-.+-|+.|+..|..+++..+. .+... +-+++..+-+|. +.++-+.++++|..+...-..+
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            4444444444 455556677788888888877765532 23333 333333444442 3344445555554443211111


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-  315 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-  315 (587)
                      .. ...          ........+.+.-..+..       ..+-++.++.++++.+..+|..+++.|..++...+... 
T Consensus        97 ~~-~~~----------~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q  158 (651)
T 3grl_A           97 EV-EEN----------STRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ  158 (651)
T ss_dssp             ----------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cc-ccc----------ccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence            00 000          000000111111111211       34678889999999999999999999999998765421 


Q ss_pred             --H--HHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCCh----HHHHHHHHhhhh
Q 007842          316 --A--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQ  384 (587)
Q Consensus       316 --~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~  384 (587)
                        +  .+.-++.+..+++|+...+|..++-.+..+...-..   -...+..++.++.++..+..    .|.+.++..+..
T Consensus       159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n  238 (651)
T 3grl_A          159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN  238 (651)
T ss_dssp             HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence              1  135678899999999999999999999988764321   11233456777777765543    677777778888


Q ss_pred             hhhhhchh--hHH-hhHHHHHHHHhcC----CChHHHH--H---HHHHHHHHHHhhCh---------hhhHHHHHHHHHH
Q 007842          385 VNQVIGID--LLS-QSLLPAIVELAED----RHWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQ  443 (587)
Q Consensus       385 l~~~~~~~--~~~-~~~l~~l~~~~~~----~~~~vR~--~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~  443 (587)
                      +.+.-...  .+. ...+|.+..+++.    ..|.-+.  .   ++..+..+...-++         ..+...+++.+..
T Consensus       239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~  318 (651)
T 3grl_A          239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT  318 (651)
T ss_dssp             HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence            77653211  111 1234444444432    2354221  1   22333333221111         1122234555556


Q ss_pred             hcCCC--chHHHHHHHHHHHHHHHHhCh--HHHh----------hhhHHHHHhhccCC-chhHHHHHHHHHHHhhc
Q 007842          444 WLQDK--VYSIRDAAANNLKRLAEEFGP--EWAM----------QHITPQVLEMINNP-HYLYRMTILRAISLLAP  504 (587)
Q Consensus       444 ~l~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~----------~~l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~  504 (587)
                      ++..+  ...+|..|+.+++.+++....  +.+.          ..++..+..++++. ...+|.+++.++..+..
T Consensus       319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence            55433  578999999999998863322  1221          22444455555554 57899999999998864

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.17  E-value=0.0004  Score=65.92  Aligned_cols=255  Identities=15%  Similarity=0.098  Sum_probs=153.0

Q ss_pred             CcchhhHHhhhHhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhH
Q 007842          139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV  218 (587)
Q Consensus       139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v  218 (587)
                      ...+..|+..++.+++++ |+..+..+..+..+|+|++..||..+...|..++..    .+.+.+..+|.++++.+++.-
T Consensus        42 ~k~K~LaaQ~I~kffk~F-P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E  116 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHF-PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE  116 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence            445666777777888777 556777888888999999999999998888888875    557888888888888877766


Q ss_pred             HHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCChH
Q 007842          219 RLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEA  294 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d~~~  294 (587)
                      +...-++|..+...-+..    .+..++.++.+ .+..+|..+++.|..-...++.+..    ...+...+.+.++|-..
T Consensus       117 ~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~  191 (507)
T 3u0r_A          117 FNLVNNALLSIFKMDAKG----TLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG  191 (507)
T ss_dssp             HHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred             HHHHHHHHHHHHhcChHH----HHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence            666666666665533222    22333333333 3578888888887766665555432    23466667777777543


Q ss_pred             HHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhcc-----C-Cc----HHHHHHHHHHHHccccccchhHHHHhHHHHHH
Q 007842          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-----D-SS----QHVRSALASVIMGMAPLLGKDATIEQLLPIFL  364 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-----d-~~----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  364 (587)
                      +-=...+..|..+- ..+.-....++++.+.....     + .+    .+....+-.++..+........+..++...++
T Consensus       192 ~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIl  270 (507)
T 3u0r_A          192 EEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVL  270 (507)
T ss_dssp             HHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhc
Confidence            32222333332211 11111223455666655421     1 22    24445555566666655554444444444444


Q ss_pred             HhhcCC-----ChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHH
Q 007842          365 SLLKDE-----FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  404 (587)
Q Consensus       365 ~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~  404 (587)
                      ..+.+-     .++.+...++.++.++...|........++.+.+
T Consensus       271 P~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~  315 (507)
T 3u0r_A          271 PNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD  315 (507)
T ss_dssp             GGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             cchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence            344332     2347889999999999988832222344444444

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.05  E-value=0.00013  Score=63.99  Aligned_cols=144  Identities=14%  Similarity=0.064  Sum_probs=97.4

Q ss_pred             HHHHHHhcCCCch--HHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---H
Q 007842          438 GALCMQWLQDKVY--SIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E  509 (587)
Q Consensus       438 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~  509 (587)
                      +|.+..++.+++.  .++..|+.++..++.....   .....-.+|.+.+++.+++..+|..|+.+|.+++.....   .
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5667777777776  7887888888777753211   122345678888888888888999999999988753211   1


Q ss_pred             HHHhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhch-HHHHhhHHHHHHHhcC-------C---------CCccHHH
Q 007842          510 ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTE-------D---------PDVDVRF  571 (587)
Q Consensus       510 ~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-------d---------~d~~Vr~  571 (587)
                      ......+|.++++++ .++..+|..++.+|.+++..-.. ..+.+..+|.|..++.       |         .+.+|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            124557888888887 46888999998888888754322 2233345666665331       1         2568888


Q ss_pred             HHHHHHHHHH
Q 007842          572 FATQAIQSID  581 (587)
Q Consensus       572 ~a~~al~~l~  581 (587)
                      +|..+|..+.
T Consensus       170 na~~~L~nLs  179 (233)
T 3tt9_A          170 NVTGCLRNMS  179 (233)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888887774

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.02  E-value=0.00055  Score=60.00  Aligned_cols=185  Identities=16%  Similarity=0.084  Sum_probs=108.5

Q ss_pred             HHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---hH
Q 007842          399 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PE  470 (587)
Q Consensus       399 l~~l~~~~~~~~~--~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~  470 (587)
                      +|.+.+++.++++  .++..++..+..++..-.   ........+|.+..+|.+++..+|..|+.+|..+.....   ..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555555555554  555555555554443210   111122346777777777788888888888887764211   11


Q ss_pred             HHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccC-hHHHHhhHHHHHHhhcC----------------CCChhHHH
Q 007842          471 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK----------------DRVPNIKF  532 (587)
Q Consensus       471 ~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~----------------d~~~~vR~  532 (587)
                      ....-.+|.+.+++. .++..+|+.+..+|-+++..-. ...+....+|.+..++.                ..++.|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            123446777777776 4677788888877777764322 22233445666666442                12668999


Q ss_pred             HHHHHHHHhhhhh-c-hHHHH--hhHHHHHHHhc------CCCCccHHHHHHHHHHHHHHh
Q 007842          533 NVAKVLQSLIPIV-D-QSMVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       533 ~~~~~l~~l~~~~-~-~~~~~--~~i~~~l~~l~------~d~d~~Vr~~a~~al~~l~~~  583 (587)
                      ++..+|.+++..- . ...+.  ..+++.|..++      .+.+...+.++..+|..|..-
T Consensus       170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999987532 1 11121  23555555543      344667889999999887643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.97  E-value=0.0049  Score=61.54  Aligned_cols=224  Identities=12%  Similarity=0.082  Sum_probs=140.3

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--
Q 007842          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--  430 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~--~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--  430 (587)
                      .-++.++.+++..+..+|..+++.|..++..-+..   .+  .+.-+|.+..++.|+...+|..++..+..+.+.-..  
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ  201 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ  201 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence            34788899999999999999999999998665432   11  134678899999999999999999999888764210  


Q ss_pred             -hhhHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHhC--hHHHh-hhhHHHHHhhccCC----chh--HHH---
Q 007842          431 -GFFDDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEFG--PEWAM-QHITPQVLEMINNP----HYL--YRM---  493 (587)
Q Consensus       431 -~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~--~~~~~-~~l~~~l~~~l~d~----~~~--~R~---  493 (587)
                       -...+...+.++.++..+..    .|-.-++..+..+.+...  ..+|. ...+|.+..++..+    .|.  .-.   
T Consensus       202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~  281 (651)
T 3grl_A          202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH  281 (651)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence             00112234556666654433    566667777777776432  23343 45677776666532    232  111   


Q ss_pred             HHHHHHHHhhcccCh---------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchH--HHH---------
Q 007842          494 TILRAISLLAPVMGS---------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--MVE---------  551 (587)
Q Consensus       494 ~a~~~l~~l~~~~~~---------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--~~~---------  551 (587)
                      .++.++.-+....+.         ......+++.+++++..+  ...+|..++.+++.++......  .+.         
T Consensus       282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~  361 (651)
T 3grl_A          282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP  361 (651)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence            244455555443221         113455777788876654  5679999999999987643221  111         


Q ss_pred             -hhHHHHHHHhcCCCC-ccHHHHHHHHHHHHH
Q 007842          552 -KTIRPCLVELTEDPD-VDVRFFATQAIQSID  581 (587)
Q Consensus       552 -~~i~~~l~~l~~d~d-~~Vr~~a~~al~~l~  581 (587)
                       ..++..+..+.++.. .++|..|+.+++...
T Consensus       362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence             224444444455544 689999999887654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.82  E-value=0.046  Score=57.01  Aligned_cols=190  Identities=9%  Similarity=0.045  Sum_probs=106.6

Q ss_pred             HhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHhhC--------hhhhHHHHHHHHHH--------h--cCCCchH
Q 007842          395 SQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG--------VGFFDDKLGALCMQ--------W--LQDKVYS  451 (587)
Q Consensus       395 ~~~~l~~l~~~~~~~-----~~~vR~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~--------~--l~d~~~~  451 (587)
                      .+..+|.+.+....+     ...+|..++.++..++-.+.        .........+....        .  -...+..
T Consensus       418 l~~~~P~l~~~~~~~~~~~~~~~l~~rAl~aLnNl~~~~~~~~~~~~~~~~~~~~w~~~~~~lw~~~~~~~~~~~~~d~~  497 (684)
T 4gmo_A          418 IQTAVPQLIRLSNLPIDSDESLTIQSHALSALNNISWTISCLEFANGENANIHNAWYPTAKKIWRKTILPILEADSADLK  497 (684)
T ss_dssp             HHTHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHHHHHHTHHHHHSSCCCCHH
T ss_pred             HHHhhhhHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhhhccccccHH
Confidence            345566666654322     34678888888888764321        11111111111111        1  1345678


Q ss_pred             HHHHHHHHHHHHHHHhChHHH-----hhhhHHHHHhhc-------------cCCchhHHHHHHHHHHHhhcccChHHHHh
Q 007842          452 IRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMI-------------NNPHYLYRMTILRAISLLAPVMGSEITCS  513 (587)
Q Consensus       452 vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l-------------~d~~~~~R~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      +...+..++..+.+.++....     ...++..+....             .++...+|..++.+||.++..-+.-....
T Consensus       498 l~~~~~s~lwa~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lrv~~ig~Lg~LA~~~~~~~~n~  577 (684)
T 4gmo_A          498 LATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNR  577 (684)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCCTTCHHHHHHHHHHHHTTC-------------CTTSHHHHHHHHHHHHTSTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHHHHHHHhcCCCCcHHHHH
Confidence            888888888888887654310     111222111111             12234589999999999998776655555


Q ss_pred             hHHHHHHhhc---CCCChhHHHHHHHHHHHhhhh--hch--H--------HHHhhHHHHHHHhc-C-CC--CccHHHHHH
Q 007842          514 RLLPVVINAS---KDRVPNIKFNVAKVLQSLIPI--VDQ--S--------MVEKTIRPCLVELT-E-DP--DVDVRFFAT  574 (587)
Q Consensus       514 ~il~~l~~~l---~d~~~~vR~~~~~~l~~l~~~--~~~--~--------~~~~~i~~~l~~l~-~-d~--d~~Vr~~a~  574 (587)
                      .|-.+++..+   .++.+++-..++.++--+..-  ++.  .        .....++|.++... . |+  +++.|..+-
T Consensus       578 ~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~vp~~k~~~K~idK~k~~elr~r~~  657 (684)
T 4gmo_A          578 EVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEFLPKMRTLTKGIDKRTQPELRTRAD  657 (684)
T ss_dssp             HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHHHHHHHHHHHTSCTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            5555666543   456677755555555555431  111  1        22356778887743 2 44  568899999


Q ss_pred             HHHHHHHHhh
Q 007842          575 QAIQSIDHVM  584 (587)
Q Consensus       575 ~al~~l~~~~  584 (587)
                      .++..|...+
T Consensus       658 e~~~NL~rFI  667 (684)
T 4gmo_A          658 EALLNLGRFV  667 (684)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988887765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.31  E-value=0.033  Score=61.07  Aligned_cols=158  Identities=9%  Similarity=0.012  Sum_probs=102.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHhCC--Cccc----cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHH
Q 007842          253 KSWRVRYMVANQLYELCEAVGP--EPTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (587)
Q Consensus       253 ~~~~vR~~a~~~l~~~~~~~~~--~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  326 (587)
                      .++.+|..++-++|.++.....  ....    ..+...+.+.+...+.+-+..++++|+.++.        +..++.+.+
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~  478 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR  478 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence            4678999999999999875421  1112    2344445555566667778888999988865        233455555


Q ss_pred             hcc-------CCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhh--cCCChHHHHHHHHhhhhhhhhhchhhHHhh
Q 007842          327 LSS-------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       327 ~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  397 (587)
                      ++.       +...++|.+|+.+|..++...+     ..+-+++.+..  ...++++|.+|+..|-.-.+.       ..
T Consensus       479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~-------~~  546 (1056)
T 1lsh_A          479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS-------VA  546 (1056)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-------HH
T ss_pred             hhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC-------HH
Confidence            542       2346899999999999874322     23445556665  456799999999888654332       12


Q ss_pred             HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhCh
Q 007842          398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV  430 (587)
Q Consensus       398 ~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~  430 (587)
                      ++..+...+ .+++..|+..+...+..+++.-.+
T Consensus       547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            344444433 567888888888877777765433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.29  E-value=0.012  Score=64.47  Aligned_cols=160  Identities=11%  Similarity=0.014  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007842          396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (587)
Q Consensus       396 ~~~l~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      ..++..+..++++    .++.+|..++-.++.++....      +....+.+...+...+...+..-+..++.+||++..
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            3456666666655    467889988888888886542      222345566666677777778888899999998763


Q ss_pred             HhChHHHhhhhHHHHHhhccC-------CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhc--CCCChhHHHHHHH
Q 007842          466 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK  536 (587)
Q Consensus       466 ~~~~~~~~~~l~~~l~~~l~d-------~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l--~d~~~~vR~~~~~  536 (587)
                              ...++.+..++..       ...++|.+|+.++..+.... +    ..+-+.+.+..  ...++++|.+|+.
T Consensus       470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p----~~v~~il~~i~~n~~e~~EvRiaA~~  536 (1056)
T 1lsh_A          470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P----RKVQEIVLPIFLNVAIKSELRIRSCI  536 (1056)
T ss_dssp             --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence                    2345666665532       23578899999999998532 2    23444555555  4568999999999


Q ss_pred             HHHHhhhhh-------------chHHHHhhHHHHHHHhcCCCCcc
Q 007842          537 VLQSLIPIV-------------DQSMVEKTIRPCLVELTEDPDVD  568 (587)
Q Consensus       537 ~l~~l~~~~-------------~~~~~~~~i~~~l~~l~~d~d~~  568 (587)
                      .|-...+..             ....+.+.+...|..+.+..+|.
T Consensus       537 ~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          537 VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence            887543321             11234455566666665555553

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.19  E-value=0.16  Score=47.78  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc----
Q 007842          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL----  233 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----  233 (587)
                      +....++++.+..+..|++.+||+.++..++..+..  ..++....++.+..++.|+++.|.+.++.+...+....    
T Consensus        58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777788888888888888888888887764  45566778888888888888888887777776655321    


Q ss_pred             ---Ch-----hhhhhc---hHHHHHHhccCCcHHHHHHHHHHHHHHHHHh
Q 007842          234 ---EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (587)
Q Consensus       234 ---~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~  272 (587)
                         +.     +..|+.   +...+....+..+..||..+++.+..++-..
T Consensus       136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q  185 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL  185 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence               10     123333   3344555667778999999999999988644

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.94  E-value=0.19  Score=44.44  Aligned_cols=128  Identities=14%  Similarity=0.215  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHH
Q 007842          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI  452 (587)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  452 (587)
                      +.+...+.....++-.-.+ .+.+.+++.+.++..+++..+|..++++++..+..  ...+...+++.+..++.|+++.|
T Consensus        30 ~~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V  106 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV  106 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            4555555555554333222 24466677777777777788888888877776643  23455667777777778888888


Q ss_pred             HHHHHHHHHHHHHHh-------Ch-------HH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          453 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       453 r~~a~~~l~~l~~~~-------~~-------~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      ...++.+.+.+++..       +.       .| ....+-..+..+..+.+..+|..+++++..+.
T Consensus       107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            888877777776532       11       11 11233344555566678888999888888876

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.88  E-value=0.3  Score=45.89  Aligned_cols=183  Identities=12%  Similarity=0.110  Sum_probs=113.0

Q ss_pred             HHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHH
Q 007842          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  453 (587)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      .+...+..+..++-.-.+ .+.+.++|.+.++..|++..+|..++++++..+.. .. .+...+++.+..++.|++..|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~-el~~~~l~~L~~LL~d~d~~V~  117 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DI-ELLLKLIANLNMLLRDENVNVV  117 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CG-GGHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHcCCCHHHH
Confidence            455556555554332222 24467788888888888888888888888877653 22 2346677778888888888888


Q ss_pred             HHHHHHHHHHHHHh--------C------hHH-HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----------
Q 007842          454 DAAANNLKRLAEEF--------G------PEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----------  508 (587)
Q Consensus       454 ~~a~~~l~~l~~~~--------~------~~~-~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----------  508 (587)
                      ..++.+.+.++...        +      ..| ....+-..+..+..+.+..+|..+++++..+......          
T Consensus       118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~  197 (386)
T 3o2t_A          118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR  197 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence            88888877776421        1      112 1133444455556677888999999888887631100          


Q ss_pred             ----------------------HHHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842          509 ----------------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  561 (587)
Q Consensus       509 ----------------------~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                                            +.-...++..+++.+.++  ++..=.+++.+|+.++..=  ..+...|++++..+
T Consensus       198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l  272 (386)
T 3o2t_A          198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL  272 (386)
T ss_dssp             GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred             cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence                                  011345667777777653  3334455667777666541  23446777777664

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.81  E-value=0.24  Score=43.74  Aligned_cols=114  Identities=14%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc---
Q 007842          157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---  233 (587)
Q Consensus       157 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---  233 (587)
                      ++....++++.+..+..|++.++|+.++..+...+..  .+.+....++.+..++.|+++.|.+.++.+...+....   
T Consensus        47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~  124 (257)
T 3gs3_A           47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY  124 (257)
T ss_dssp             TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778888888888889999999999999888754  46677888889999999999999888888777665431   


Q ss_pred             ----Ch-----hhhhhc---hHHHHHHhccCCcHHHHHHHHHHHHHHHHHh
Q 007842          234 ----EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (587)
Q Consensus       234 ----~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~  272 (587)
                          +.     +..|+.   +...+....+..+..||..+++.+..+.-..
T Consensus       125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q  175 (257)
T 3gs3_A          125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ  175 (257)
T ss_dssp             HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence                11     223333   3444556667778899999999999887543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=96.66  E-value=0.0089  Score=62.37  Aligned_cols=106  Identities=16%  Similarity=0.078  Sum_probs=53.3

Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhccCC--------------c-------hhHHHH
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNP--------------H-------YLYRMT  494 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~--------------~-------~~~R~~  494 (587)
                      ++..++.|++.+||.+|+.+|++++...|.+.    +...+++.+..+++..              .       +.+-..
T Consensus        80 ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (684)
T 4gmo_A           80 VLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGS  159 (684)
T ss_dssp             HHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHH
Confidence            33445566666666666666666655444332    2233444443333210              0       122233


Q ss_pred             HHHHHHHhhcccChH---HHHhhHHHHHHhhcCC---CChhHHHHHHHHHHHhhhhh
Q 007842          495 ILRAISLLAPVMGSE---ITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       495 a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d---~~~~vR~~~~~~l~~l~~~~  545 (587)
                      ++.++..++...+..   ......+|.++..+.+   ....++..++.+|..+....
T Consensus       160 ~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn  216 (684)
T 4gmo_A          160 LLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN  216 (684)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence            445555555432221   1223455666665532   24679999999999887653

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.97  E-value=0.44  Score=39.80  Aligned_cols=140  Identities=12%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcC------CChHHHHHHHHHHHHHHHh--hChhhhHHHHHHHHHHh
Q 007842          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  444 (587)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~------~~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~  444 (587)
                      ..|..|+..+..   .-|.    ..++|.+..++.+      .++..=...++....+...  +.-+.+...++|.++.+
T Consensus        23 ~~r~~aL~sL~~---D~gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEK---ESGL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHH---CSSC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCh----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            346666666554   3333    3455655554322      3555444455555555543  33455667788888776


Q ss_pred             cCC---CchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHHHHhhHHH
Q 007842          445 LQD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP  517 (587)
Q Consensus       445 l~d---~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~il~  517 (587)
                      +-.   ....+|..|+..++.+++.++..  .....+...+.+.+.|+  +...+..|+..+..++.    +.+...++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence            521   12289999999999999998874  35567777777777775  56788888888877654    445555667


Q ss_pred             HHHhhc
Q 007842          518 VVINAS  523 (587)
Q Consensus       518 ~l~~~l  523 (587)
                      .+-...
T Consensus       172 ~l~~~~  177 (196)
T 4atg_A          172 HAEEYK  177 (196)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
Confidence            665554

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=93.43  E-value=0.33  Score=38.36  Aligned_cols=72  Identities=10%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH
Q 007842          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       477 ~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      +..+.+-+++.++.+...|+..+..+.+++|..+.    ...++..+.++++..++.||..++..+..+...++.+
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            33444444555555666666666666666665432    2334444555554567888888888888887766544

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.39  E-value=4.6  Score=36.83  Aligned_cols=126  Identities=14%  Similarity=0.235  Sum_probs=90.1

Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHh---hhhHHHHHhhccCCchhHHHHHHHHHHHhhccc-ChHHH-
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT-  511 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~---~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~-~~~~~-  511 (587)
                      .++.+++.++.+|-.-|..++..+....   -.+++.   +.++.....++.++|+-+|..+++.||.+.-.- ....+ 
T Consensus       168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~  247 (341)
T 1upk_A          168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  247 (341)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence            3556788899999988888888886531   123322   456777777899999999999999999997421 11111 


Q ss_pred             ----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc-hH-------HHHhhHHHHHHHhcCCC
Q 007842          512 ----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QS-------MVEKTIRPCLVELTEDP  565 (587)
Q Consensus       512 ----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~-~~-------~~~~~i~~~l~~l~~d~  565 (587)
                          .+.-+..+..+++|++.+++..|...+..++..-. +.       .-.+.++..+..+..|+
T Consensus       248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                24457788889999999999999999887764321 11       12356778888888877

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=92.41  E-value=1  Score=35.86  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=39.1

Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhhchH
Q 007842          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      +..-++++|+.+...|+..+..+.+++|..+.    ...++..+.+++.+      .++.||..++..+..+...++..
T Consensus        53 l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  131 (149)
T 3g2s_A           53 LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE  131 (149)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            33334455555555555555555555554432    23445555555543      46678888888888777666443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.39  E-value=3.2  Score=33.03  Aligned_cols=73  Identities=15%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhh
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+..+..-++++|+.+...|+..+..+.+++|..+.    ...++..+.+++.+      .++.||..++..+..+...+
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            344455556677788888888888888888776542    35577777777654      36789999998888888777


Q ss_pred             chH
Q 007842          546 DQS  548 (587)
Q Consensus       546 ~~~  548 (587)
                      +..
T Consensus       119 ~~~  121 (148)
T 1mhq_A          119 PED  121 (148)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            544

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.27  E-value=2.1  Score=37.00  Aligned_cols=131  Identities=6%  Similarity=-0.032  Sum_probs=86.0

Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  283 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~  283 (587)
                      ..+..+...+..+.|..++..+......+.+     ..++.+...+. .++|.+-...+.+++.+...     .+..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence            4555556666777888888877765443332     22344444443 46788777766667776653     2344677


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 007842          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      .+.....|++.-+|..++.++-.....    .....+++.+..++.|++..||.+...+|..++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKEK----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGGG----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            788888888877777777655322221    12245577777788999999999999999888754

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=92.02  E-value=5.7  Score=34.54  Aligned_cols=158  Identities=11%  Similarity=0.089  Sum_probs=92.8

Q ss_pred             HHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc-cCCcHHHHHHH-HHHHHHHHHHhCCCccccchH
Q 007842          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLV  282 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a-~~~l~~~~~~~~~~~~~~~l~  282 (587)
                      ..+..+..++..+.|..|+..+......+.++     .++.+...+ ..++|.+-... ...++.+...     .+....
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHHHH
Confidence            45555666677778888887776544433332     122222222 35678875555 3566776654     123355


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHH
Q 007842          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  362 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  362 (587)
                      +.+.....|++.-+|..++..+-........    ..+.+.+...+.|++..||.+...+|..++...+     +.+.++
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~f  204 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEY  204 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHH
Confidence            6677777888777777766654222211111    3456667778899999999999999998876532     234444


Q ss_pred             HHHhhcCCChHHHHHHHHhhh
Q 007842          363 FLSLLKDEFPDVRLNIISKLD  383 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~  383 (587)
                      +.+.  .-++-++..|++.|.
T Consensus       205 l~~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          205 VQNN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HHHS--CCCHHHHHHHTTTTH
T ss_pred             HHHC--CCCHHHHHHHHHhcc
Confidence            4443  233445555555443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=91.85  E-value=7.4  Score=35.48  Aligned_cols=184  Identities=9%  Similarity=0.046  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hChhh-----h--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGF-----F--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-  466 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~-~~~~~-----~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-  466 (587)
                      ..++..+...+..=++..|..+...+..+.+. .|...     +  .+.++..+.....+++...  .+-..|...++. 
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhH
Confidence            34555566666666777777777766666542 12110     1  1345666666666555332  122222222211 


Q ss_pred             -hChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HH---HHhhHHHHHHhhcCCCChhHHHHHHHHHH
Q 007842          467 -FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       467 -~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~  539 (587)
                       +..-.+....+-.+.+....++..+-.-|...+..+......   ++   ..+.++....+++.++++..|..+++.|+
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence             000011223344666788889999988888888887643221   11   13567777888999999999999999999


Q ss_pred             HhhhhhchH----HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          540 SLIPIVDQS----MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       540 ~l~~~~~~~----~~--~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      .+...-...    .+  ...-+..+..++.|+..+++.-|-..++-+.
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV  282 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  282 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence            987542222    11  1345788888999999999999998887653

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=90.44  E-value=3.7  Score=35.41  Aligned_cols=132  Identities=8%  Similarity=-0.010  Sum_probs=86.6

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       400 ~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      ..+..+..++....|..++..++...+.+     .+..++.+..++. -++|.+-...+.+++.++....     +.+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence            55566667777778888777776543222     2344666666664 4567777766666666654322     33567


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+.....+++..+|..++.+.-....    +.....+++.+...+.|+..-||.++..+|..++...
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~  190 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  190 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence            77788888887777777664422221    1123556777777889999999999999999988763

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=90.24  E-value=4  Score=33.41  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhh
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  543 (587)
                      ...+..+.+-++++|+.+...|+..+..+.+++|..+.    ...++..+.+++..      .+..||..++..+..+..
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34556666777889999999999999999999887653    35567777777652      468999999999999998


Q ss_pred             hhchHHHHhhHHHHHHH
Q 007842          544 IVDQSMVEKTIRPCLVE  560 (587)
Q Consensus       544 ~~~~~~~~~~i~~~l~~  560 (587)
                      .++...........|..
T Consensus       129 ~f~~~~~i~~~y~~Lk~  145 (171)
T 1juq_A          129 ALPEEAKIKDAYHMLKR  145 (171)
T ss_dssp             HCTTCHHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHH
Confidence            87665433334444443

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=90.15  E-value=3.3  Score=36.09  Aligned_cols=60  Identities=10%  Similarity=-0.012  Sum_probs=28.5

Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 007842          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~  269 (587)
                      .+.....+++.-+|+.|+..+-.   .. .......+.+.+.....|++..||.+..-.|..++
T Consensus       135 ~l~~W~~s~~~w~rR~ai~~~l~---~~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~  194 (232)
T 3jxy_A          135 YIPKWIASDNIWLQRAAILFQLK---YK-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA  194 (232)
T ss_dssp             THHHHHHSSCHHHHHHHHHTTTT---CG-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCchHHHHHHHHHHHH---HH-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            33444555555555555443211   11 11112234455555566666666666666555544

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.02  E-value=1.3  Score=36.04  Aligned_cols=69  Identities=9%  Similarity=0.096  Sum_probs=38.3

Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhhhchH
Q 007842          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       480 l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      +.+-++++++.+...|+..+..+.+++|..+.    ...++..+.++++. .++.||..++..+..+...++..
T Consensus        57 l~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           57 IMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33334445555555555555555555554332    13344444444433 46688888888888777766543

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=89.69  E-value=8.1  Score=32.25  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhccCC-
Q 007842          413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP-  487 (587)
Q Consensus       413 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~-  487 (587)
                      .|..+++.   +...-|-....++++..+.....  -.+...-...+.....+...  +.-+.+...++|.++..+-.. 
T Consensus        24 ~r~~aL~s---L~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~  100 (196)
T 4atg_A           24 MKDIAIEC---LEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS  100 (196)
T ss_dssp             THHHHHHH---HHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH---HhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence            35555443   34444544443433333322221  12444444455555555542  122345567788776653221 


Q ss_pred             --chhHHHHHHHHHHHhhcccChH--HHHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHh
Q 007842          488 --HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  561 (587)
Q Consensus       488 --~~~~R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                        ...+|.-|...++.++..+|..  ...+++...+.+.+.|+  +...+..|+..|..+.    ++.+...++|.+..+
T Consensus       101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP~l~~~  176 (196)
T 4atg_A          101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIREHAEEY  176 (196)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhcCHHHH
Confidence              2279999999999999988763  35678888888888775  5567777887777664    455556677888776


Q ss_pred             cC
Q 007842          562 TE  563 (587)
Q Consensus       562 ~~  563 (587)
                      .+
T Consensus       177 ~~  178 (196)
T 4atg_A          177 KR  178 (196)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=88.14  E-value=2.6  Score=36.43  Aligned_cols=73  Identities=8%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchH
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      .+..+.+-++++|+.+...|+..+..+.++.|..+.    ...++..+.++++ .+++.||..++..+..+...+..+
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            344455555666667777777777777766665432    2334444444332 346788888888888887776544

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=87.78  E-value=4.6  Score=32.52  Aligned_cols=74  Identities=12%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             hhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChHHH----HhhHHHH-HHhhcC---CCChhHHHHHHHHHHHhhhh
Q 007842          474 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASK---DRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       474 ~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~---d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ...+..+.+-++ ++|+.+...|+..+..+.+++|..+.    ...++.. +.+.+.   ++...||..++..+..+...
T Consensus        52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~  131 (157)
T 1elk_A           52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA  131 (157)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            344556666666 57899999999999999999998653    2446665 566553   34568999999999999877


Q ss_pred             hch
Q 007842          545 VDQ  547 (587)
Q Consensus       545 ~~~  547 (587)
                      ++.
T Consensus       132 f~~  134 (157)
T 1elk_A          132 FRS  134 (157)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            653

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=86.97  E-value=10  Score=30.12  Aligned_cols=96  Identities=9%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  482 (587)
                      .+++|..-..++..+..     .+ .-....+..+.+.+.+.++.+...|+..|..+++..|..|.    ...++..+..
T Consensus        25 ~~~dw~~ileicD~I~~-----~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k   98 (149)
T 3g2s_A           25 KELDWASINGFCEQLNE-----DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK   98 (149)
T ss_dssp             SSCCHHHHHHHHHHGGG-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHC-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence            45677654444333321     11 11334566777788899999999999999999999988763    3567777777


Q ss_pred             hccC------CchhHHHHHHHHHHHhhcccCh
Q 007842          483 MINN------PHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       483 ~l~d------~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      ++.+      .+..||...+..+..-...++.
T Consensus        99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  130 (149)
T 3g2s_A           99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPE  130 (149)
T ss_dssp             HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            7654      4678999999988888776654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.58  E-value=10  Score=29.76  Aligned_cols=74  Identities=9%  Similarity=-0.020  Sum_probs=47.3

Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh----hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007842          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~  276 (587)
                      .+..+..-++..++.+...|+..+..+...+++...    ...++.-+..+++..++.||..+...+...+..++.+.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP  120 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            444455555666777777788888888877776321    22234444444445677888888888888877776543

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=86.35  E-value=3.9  Score=31.46  Aligned_cols=26  Identities=19%  Similarity=0.292  Sum_probs=12.2

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHH
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISL  501 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~  501 (587)
                      ++|.|+..++|.||.+....+..+..
T Consensus        32 ~lp~LL~WLQD~NWPvA~~i~~~L~~   57 (134)
T 3ut4_A           32 IIFDLLKWLQDYNWPIAKDILPVVVL   57 (134)
T ss_dssp             HHHHHHGGGSCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            44444445555555544444444433

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=85.40  E-value=27  Score=33.55  Aligned_cols=250  Identities=11%  Similarity=0.105  Sum_probs=124.8

Q ss_pred             cCCcHHHHHHHHHHHHHHHHH--hCC----CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh-CHHHH-HHhHhH
Q 007842          251 QDKSWRVRYMVANQLYELCEA--VGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPELA-IQHILP  322 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~~~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-~~~i~~  322 (587)
                      .|++|.--..+.+.+-.+...  +..    ......++--++.++.++|+.-|......|..+-..+ +...+ ...+-.
T Consensus       127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n  206 (449)
T 2npp_B          127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  206 (449)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888888888888877653  222    1223357777888899999999998888887776543 22222 122222


Q ss_pred             HHHHhccCCc-HHHHHHHHHHHHccccccc---hhHHHHhHHHHHHHhhcCCCh-HHHHHHHHhhhhhhhhhchhhHHhh
Q 007842          323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~  397 (587)
                      .+.+.+.... ..=-..+.+.++.+...+.   ++.....+...+..+.+...- .-......++..+.+.-  ..+...
T Consensus       207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~  284 (449)
T 2npp_B          207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP  284 (449)
T ss_dssp             HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHH
Confidence            2223221111 0001123333333333221   223333333334444443321 11122223333332210  111123


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHH---HHHhcCCCchHHHHHHHHHHHHH--HHHhChHHH
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWA  472 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~  472 (587)
                      ++..+...---.+..-....+..++.+...+++..|.....|+   +-.++.+++..|-+.|+..+.+=  ...+..  .
T Consensus       285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n  362 (449)
T 2npp_B          285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--N  362 (449)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--T
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--c
Confidence            3333333322234444455677777788777777776554444   44567888999988888665321  111110  1


Q ss_pred             hhhhHHHHHhhc----cCC-chhHHHHHHHHHHHhhc
Q 007842          473 MQHITPQVLEMI----NNP-HYLYRMTILRAISLLAP  504 (587)
Q Consensus       473 ~~~l~~~l~~~l----~d~-~~~~R~~a~~~l~~l~~  504 (587)
                      ...++|.+...+    +.. +..+|..+..++..+.+
T Consensus       363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            233445444322    222 55678888777776554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.17  E-value=14  Score=29.27  Aligned_cols=96  Identities=7%  Similarity=-0.006  Sum_probs=66.7

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  482 (587)
                      .+++|..-..++..+..=     + .-....+..+...+++.++.+...|+..|..+++..|..|.    ...++..+..
T Consensus        15 ~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k   88 (148)
T 1mhq_A           15 SEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK   88 (148)
T ss_dssp             SSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            457786644444433221     1 11234556677778899999999999999999999998753    3567777777


Q ss_pred             hccC------CchhHHHHHHHHHHHhhcccCh
Q 007842          483 MINN------PHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       483 ~l~d------~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      ++.+      .+..||..++..+..-+..++.
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (148)
T 1mhq_A           89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (148)
T ss_dssp             TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            7654      3678999999888887766543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=83.74  E-value=21  Score=31.04  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhhhHHH
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~   90 (587)
                      +..++..|.++  +.|..|+..|++-.      ....++-|.++.....-.-..+++...-+.+.+    +.    +   
T Consensus         5 i~qli~~L~~p--~~Re~AL~eLsk~R------e~~~~La~~LW~S~Gtia~LLQEIisiYp~lsp----p~----L---   65 (268)
T 2fv2_A            5 IYQWINELSSP--ETRENALLELSKKR------ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINP----PT----L---   65 (268)
T ss_dssp             HHHHHHHTSST--TTHHHHHHHHHHHT------TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTT----BC----C---
T ss_pred             HHHHHHHhcCc--hhHHHHHHHHHHhh------hccccHHHHHHhccCHHHHHHHHHHHHcccCCC----cc----c---
Confidence            45566666644  46999998886532      234577888887544222333333333333321    11    0   


Q ss_pred             HhhhhcchhhHHHH-HHHHHHHHHHhhcCh------hhHHhhHHHHHHHHhcCC-CCcchhhHHhhhHhhcCCCChHHH-
Q 007842           91 LETLCTVEETCVRD-KAVESLCRIGSQMRE------SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-  161 (587)
Q Consensus        91 l~~l~~~~~~~vr~-~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-  161 (587)
                            .....-|- .|+.-+..++.+-..      .++--++.|++....++. .+..|.++.+.+|.+.+.-+++.. 
T Consensus        66 ------t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~  139 (268)
T 2fv2_A           66 ------TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVIN  139 (268)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred             ------CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHH
Confidence                  01111121 222222333332211      123445777776444433 355688888888888876655532 


Q ss_pred             ----HHHHHHHHHhcCCCChHHHHHHHHhHHHHHH
Q 007842          162 ----TELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (587)
Q Consensus       162 ----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~  192 (587)
                          .+++|++...++.++..-|..|.-.+.++..
T Consensus       140 fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~  174 (268)
T 2fv2_A          140 FLLTTEIIPLCLRIMESGSELSKTVATFILQKILL  174 (268)
T ss_dssp             HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence                4678888888888888878777777777654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.70  E-value=16  Score=29.53  Aligned_cols=75  Identities=11%  Similarity=-0.025  Sum_probs=47.7

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhh----hhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCC
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE  275 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~  275 (587)
                      ...+..+..-++..++.+...|+..|..+...+++...    ...++.-+.+++.. .++.||..+...+......++..
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33445555556667778888888888888888776321    12233333343333 56788888888888877777654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=81.60  E-value=31  Score=31.47  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             CchHHHHHHHHHHHHHHH---HhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc-ChHHH--HhhHHHHHHh
Q 007842          448 KVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT--CSRLLPVVIN  521 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~-~~~~~--~~~il~~l~~  521 (587)
                      .+...+..++..|..+.+   .+-.+|....-+..+..+..+.+..+..-++.+++.+..+. |-.-+  .+.++..+..
T Consensus       130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys  209 (339)
T 3dad_A          130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT  209 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence            444445555555555332   23334444455566666666666666666666666666531 11111  2334455555


Q ss_pred             hcCCCChhHHHHHHHHHHHhhhh
Q 007842          522 ASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       522 ~l~d~~~~vR~~~~~~l~~l~~~  544 (587)
                      ++......|-..+++.|..++..
T Consensus       210 lv~s~~~~V~k~AL~LL~v~V~~  232 (339)
T 3dad_A          210 LCASLSRLVVKTALKLLLVFVEY  232 (339)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCccHHHHHHHHHHHHHHHcc
Confidence            55556666666666666666544

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.87  E-value=21  Score=29.04  Aligned_cols=73  Identities=5%  Similarity=-0.017  Sum_probs=49.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhh----HHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHH
Q 007842          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQD------KVYSIRDAAANNLKRLAEE  466 (587)
Q Consensus       397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~  466 (587)
                      ..+..+...+++.++.+...++..+..+.+..|..+.    ...++.-+..++..      ....||..++..+..+...
T Consensus        50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4556666667778888888888888888877665432    13345555555542      3577888888888888776


Q ss_pred             hCh
Q 007842          467 FGP  469 (587)
Q Consensus       467 ~~~  469 (587)
                      ++.
T Consensus       130 f~~  132 (171)
T 1juq_A          130 LPE  132 (171)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.72  E-value=18  Score=31.10  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  482 (587)
                      .+++|..-..++..+.   .  +. .-....+..+..-++..++.|...|+..|..+++..|..+.    ...++..|..
T Consensus        22 ~~~dw~~ileicD~I~---~--~~-~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~   95 (226)
T 3zyq_A           22 LETDWESILQICDLIR---Q--GD-TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD   95 (226)
T ss_dssp             SSCCHHHHHHHHHHHH---T--TS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh---C--CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence            4567876444444432   1  11 11344566777888899999999999999999999888653    2455555555


Q ss_pred             hcc-CCchhHHHHHHHHHHHhhcccCh
Q 007842          483 MIN-NPHYLYRMTILRAISLLAPVMGS  508 (587)
Q Consensus       483 ~l~-d~~~~~R~~a~~~l~~l~~~~~~  508 (587)
                      +++ ..+..||..++..+..-+..+..
T Consensus        96 l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           96 LLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            543 34678888888888887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	587
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-132
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-29
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-11
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-13
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	5e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.001
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.002
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-08
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	8e-04
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	2e-07
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.001
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.001

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  397 bits (1020), Expect = e-132
 Identities = 341/580 (58%), Positives = 439/580 (75%), Gaps = 4/580 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 305 TKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545

Query: 541 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 580
           + PI+D S ++  ++P L +LT+D DVDV++FA +A+  +
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 3e-29
 Identities = 93/503 (18%), Positives = 189/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E      ++     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVA 240
               +    V P   KTD++  F++L +D +  VR  A        + L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 8e-14
 Identities = 52/431 (12%), Positives = 132/431 (30%), Gaps = 24/431 (5%)

Query: 177 PMVRRSAASNLGKFAATVEPAHLKTD---IMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233
              R  A ++L                  ++ +   L +D    V+ LAV+    L   +
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------ 287
             +  V  I+  +         ++R + +  L  +   + P  +   L     +      
Sbjct: 77  -KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 288 ---LLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDSSQHVRSALASV 342
              + +  +  V++ A   +          L   H  IL C+    +     VR      
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195

Query: 343 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLP 400
           +  +    G    ++ +  +   L K++        I  +  +++  G  +      ++P
Sbjct: 196 LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255

Query: 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAAN 458
            +V+        +R   I+       +           +  +C+++L        D    
Sbjct: 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 315

Query: 459 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLL 516
           +   +  +          +       ++  +  R    + +  +       +      + 
Sbjct: 316 DENAMDADG--GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS 373

Query: 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA 576
           P +I+  K+R  N+K +V     SL+    + +      P  +E  E P   ++      
Sbjct: 374 PALISRFKEREENVKADVFHAYLSLL-KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 432

Query: 577 IQSIDHVMMSS 587
           ++++   M   
Sbjct: 433 VKALHKQMKEK 443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 72/499 (14%), Positives = 151/499 (30%), Gaps = 28/499 (5%)

Query: 105  KAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDILKTE 163
            K +  L +  S      + D +   +KRL A       +  A         +  D L ++
Sbjct: 545  KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604

Query: 164  L-RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222
            L  ++   L +    + R +    L   A +     L+  +      L    + + R L 
Sbjct: 605  LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 664

Query: 223  VEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE- 275
            +   +AL  L++          +  +L  +     +    V  M  + L  L +      
Sbjct: 665  LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 724

Query: 276  -PTRMDLVPAYVRLLRD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
                  ++   + L+R          A +    A  VT    +   +L      P   + 
Sbjct: 725  SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 784

Query: 328  SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387
            ++ + +    ++A  +  +     K+        I           +RL  +  L +V  
Sbjct: 785  TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 844

Query: 388  VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447
             I +    + L   I+E        V+ A    +  ++      +    L  +  Q    
Sbjct: 845  HIDLSGQLE-LKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--K 901

Query: 448  KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507
            + Y +  +    +   +      +    I   +L+         R  +   +  L  +  
Sbjct: 902  RQYLLLHSLKEIISSASVVGLKPYVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDP 960

Query: 508  SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDP 565
                   LLP +           + +V   ++  I    Q +    K      ++  EDP
Sbjct: 961  ET-----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP 1015

Query: 566  DVDVRFFATQAIQSIDHVM 584
            D++VR  A     S  H  
Sbjct: 1016 DLNVRRVALVTFNSAAHNK 1034

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 64/466 (13%), Positives = 146/466 (31%), Gaps = 47/466 (10%)

Query: 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRL 220
           L  + T+L  +D P  R  +   L           P  +   I S   +   D    +R 
Sbjct: 48  LIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRA 106

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 278
                   +    E Q+    +LP + +    + +         L ++CE          
Sbjct: 107 TVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 279 -----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDS 331
                  ++P +++  + +  ++R  A   V +F       L +        +  L+ D 
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225

Query: 332 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389
              VR  +   ++ +  +        +  ++   L   +D+  +V L        + +  
Sbjct: 226 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 285

Query: 390 GIDLLSQSLLPAIVELAEDRHWRVRLAII---------EYIPLLASQLGVGFFDDKLGAL 440
               +    LP ++ +  +      + II         E IP     +   F   +  A 
Sbjct: 286 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345

Query: 441 CM----------------QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
                                    +++R  +A  L  LA  +  +  + HI P + E++
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELL 404

Query: 485 NNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542
            +  ++ + + +  +  +A      +      L+P +I    D+   ++      L    
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 543 PIV---DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 585
             V         K +   L++   D +  V+  A  A  +++    
Sbjct: 465 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 76/617 (12%), Positives = 177/617 (28%), Gaps = 59/617 (9%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE--------VLL 65
            ++ + +    +R      ++TIA     +    +L+P L    D +D          L 
Sbjct: 93  CLNNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQ 151

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLV 123
            + E+    +         ++++P            +R  AV  + +      ++    +
Sbjct: 152 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211

Query: 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS---IYTQLCQDDMPMVR 180
           D +   +  LA  E    R + C    +      D L   + +      Q  QD    V 
Sbjct: 212 DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVA 271

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             A       A       +    +     +  +      +  +     + +     D   
Sbjct: 272 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331

Query: 241 HILPVI-------------------------VNFSQDKSWRVRYMVANQLYELCEAVGPE 275
            I P                            +      W +R   +    ++   V  +
Sbjct: 332 DIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLR-KCSAAALDVLANVYRD 390

Query: 276 ---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332
              P  + L+   +        E  I   G + + C         + I P + +  SD  
Sbjct: 391 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI-PHLIQCLSDKK 449

Query: 333 QHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389
             VRS     +   A  +        ++ L+   L  + D    V+    S    + +  
Sbjct: 450 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 509

Query: 390 GIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447
             +L+     +L  +V        +  L + + I  LA  +G      +   + M  L  
Sbjct: 510 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 569

Query: 448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507
           K   ++D   +              ++ ++     + +           R ++L+   + 
Sbjct: 570 KWNMLKDEDKDLFP----------LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA 619

Query: 508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 567
             +  +          KD +      ++ + + L   ++Q +    I   + +  +D   
Sbjct: 620 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP 679

Query: 568 DVRFFATQAIQSIDHVM 584
           +VR  +   +  +    
Sbjct: 680 EVRQSSFALLGDLTKAC 696

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 61/430 (14%), Positives = 130/430 (30%), Gaps = 41/430 (9%)

Query: 3   MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE------- 55
             DE         D+  +DD  +   ++R+ S  A  +     R EL+P +         
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 405

Query: 56  NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGS 115
           +++   +    +           G + +   L+P L    + ++  VR     +L R   
Sbjct: 406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 116 QMRESDLVDWYIPLV-----------KRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164
            +       +  PL+           KR+                    P    IL T +
Sbjct: 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 525

Query: 165 RSIYTQLCQDDMPMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222
            +      Q    ++   A   L         +P +++  +  + +       +   L  
Sbjct: 526 FAF--SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

Query: 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  C +          + +  PV           +   + N           E    D +
Sbjct: 584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY----EAPDKDFM 639

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              + LL           +G        +   +A  +IL  + +   D    VR +  ++
Sbjct: 640 IVALDLL-----------SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 688

Query: 343 IMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSL 398
           +  +     +     I   +PI  + L  EF  V  N    + +++  +GI++      +
Sbjct: 689 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV 748

Query: 399 LPAIVELAED 408
           L  +VE+   
Sbjct: 749 LHQLVEIINR 758

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 10/260 (3%)

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L         +  +  +  +  +  Q     VR +A  NL K  +            ++F
Sbjct: 201 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 260

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +  +  +  +A++G      + + +  +A          +      ++     L  
Sbjct: 261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
           L   +    T+ D          D++      AAG           +  + H+LP +KE 
Sbjct: 321 LVPILTQTLTKQDEND-------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 373

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
             +     R A       +            + Q +P  + L+KD    VR      + +
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 433

Query: 385 VNQVIGIDLLSQSLLPAIVE 404
           + +++    ++   L  +++
Sbjct: 434 ICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 51/378 (13%), Positives = 107/378 (28%), Gaps = 29/378 (7%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD------EVL 64
           +   + +    +     ++ + ++ IA A        ELIP L  N  + +      E  
Sbjct: 90  VKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKEST 149

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC--VRDKAVESLCR----IGSQMR 118
           L     +   I      + ++ +L  +      EE    V+  A  +L        +   
Sbjct: 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----D 174
           +     + + +V           RV+A              ++T +      +       
Sbjct: 210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 269

Query: 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234
           D+  V                      D+     +  +  +            AL  L+ 
Sbjct: 270 DIDEVALQGIEFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 323

Query: 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294
               +        + + D         A     L      +     ++P     +++ + 
Sbjct: 324 ----ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 379

Query: 295 EVRIAAA---GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351
             R AA    G + +       +  +   +P + EL  D S  VR   A  +  +  LL 
Sbjct: 380 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439

Query: 352 KDATIEQLLPIFLSLLKD 369
           + A  +  L   L  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 50/410 (12%), Positives = 115/410 (28%), Gaps = 54/410 (13%)

Query: 127 IPLVKRLAAGEWFTARVSA-----CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
              V R+AAG      +++        +   + +     + E+++   Q    +      
Sbjct: 48  NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRPS 106

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDCV 239
           SA+  +   A    P +   +++        +   +  ++   +E    + + ++P+   
Sbjct: 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 166

Query: 240 AHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR 290
                ++    Q     + S  V+    N L    E        E  R  ++       +
Sbjct: 167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 226

Query: 291 DNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMA 347
             +  VR+AA   + K   +    +       +     E        V          + 
Sbjct: 227 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286

Query: 348 -----------------------PLLGKDATIEQLLPIFLSL-------LKDEFPDVRLN 377
                                          ++ L+PI             D+  +    
Sbjct: 287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 346

Query: 378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437
               L  +      D++   L P I E  ++  WR R A +     +            +
Sbjct: 347 AGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 438 GALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
                  ++ ++D    +RD AA  + R+ E              +L+ +
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 64/402 (15%), Positives = 121/402 (30%), Gaps = 61/402 (15%)

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254
               +K  ++      T     + + +A   CA +     P+     +  V    S +  
Sbjct: 86  ARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 145

Query: 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILN 312
                     + +  +    +    +++ A ++ +R  E    V++AA   +        
Sbjct: 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205

Query: 313 P----ELAIQHILPCVKELSSDSSQHVRSALASVI---MGMAPLLGKDATIEQLLPIFLS 365
                E     I+  V E +      VR A    +   M +     +      L  I + 
Sbjct: 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265

Query: 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
            +K +  +V L             GI+  S      +    E      +    E+     
Sbjct: 266 AMKSDIDEVALQ------------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 313

Query: 426 SQLGVGFFDDKLGALCMQ---WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 482
           ++  + +    L     +      D  ++   AA   L  LA     +  + H+ P + E
Sbjct: 314 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKE 372

Query: 483 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542
            I NP + YR   + A   +                                      L 
Sbjct: 373 HIKNPDWRYRDAAVMAFGCILEGPEPSQ------------------------------LK 402

Query: 543 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 584
           P+V Q+M      P L+EL +DP V VR  A   +  I  ++
Sbjct: 403 PLVIQAM------PTLIELMKDPSVVVRDTAAWTVGRICELL 438

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 53/301 (17%), Positives = 86/301 (28%), Gaps = 93/301 (30%)

Query: 91  LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150
           L   CT  + CV  ++   + R                L  +  A  ++  R  A     
Sbjct: 17  LTGRCTPGDACVAVESGRQIDRFFR---------NNPHLAVQYLADPFWERRAIA----- 62

Query: 151 IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210
               S  + L        T L +D   +VRR+ A  L +                    L
Sbjct: 63  -VRYSPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLSAL 98

Query: 211 TQDDQDSVRLLAVEGC--AALGKLLEPQD-------CVAHILPVIVNFSQDKSWRVRYMV 261
             D+   VR+   +      L ++   +D               +  F +D+  +VR +V
Sbjct: 99  MFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLV 158

Query: 262 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321
           A +                   +   + +D E EVR   A ++                 
Sbjct: 159 AKR---------------LPEESLGLMTQDPEPEVRRIVASRL---------------RG 188

Query: 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
             + EL  D    VR A                  E      L  L +  P+VRL I  +
Sbjct: 189 DDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGR 232

Query: 382 L 382
           L
Sbjct: 233 L 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 54.7 bits (131), Expect = 5e-09
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 282 VPAYVRLLRDNEAEVRIAAAG-------------KVTKFCRILNPELAIQHILPCVKELS 328
           V A   L+RD++  VR A A              +  +    +   L ++ +        
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--D 125

Query: 329 SDSSQHVRSALASVIMGMAPLL-------GKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
            D               +   +        K             + +D  P+VR  + S+
Sbjct: 126 RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185

Query: 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441
           L                   ++EL  D  W VRLA +E+  L A                
Sbjct: 186 LR---------------GDDLLELLHDPDWTVRLAAVEHASLEA---------------- 214

Query: 442 MQWLQDKVYSIRDAAANNL 460
           ++ L +    +R A A  L
Sbjct: 215 LRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 82/304 (26%)

Query: 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335
             RM L+        D  A V + +  ++ +F R  NP LA+Q++        +D     
Sbjct: 10  SFRMSLLLTGRCTPGD--ACVAVESGRQIDRFFR-NNPHLAVQYL--------ADPFWER 58

Query: 336 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395
           R+              + + +E L P    L++D    VR  +  +L +           
Sbjct: 59  RAIAV-----------RYSPVEALTP----LIRDSDEVVRRAVAYRLPR----------- 92

Query: 396 QSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453
                 +  L  D    VR+ + +   +  L        +  +   +           +R
Sbjct: 93  ----EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR 148

Query: 454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513
           D      K +A+    E         +  M  +P    R  +   +              
Sbjct: 149 DEDRQVRKLVAKRLPEES--------LGLMTQDPEPEVRRIVASRLRG------------ 188

Query: 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 573
                ++    D    ++    +                      +   ++PD +VR   
Sbjct: 189 ---DDLLELLHDPDWTVRLAAVE----------------HASLEALRELDEPDPEVRLAI 229

Query: 574 TQAI 577
              +
Sbjct: 230 AGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 41/266 (15%), Positives = 68/266 (25%), Gaps = 92/266 (34%)

Query: 38  RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97
           RA+    +  E +  L    D D+ V  A+A  L                   L  L   
Sbjct: 59  RAIAVRYSPVEALTPLI--RDSDEVVRRAVAYRLPR---------------EQLSALMFD 101

Query: 98  EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157
           E+  VR    + L                +  ++++AA   +  R               
Sbjct: 102 EDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP------ 140

Query: 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217
                       +  +D+   VR+  A  L                      +TQD +  
Sbjct: 141 --------GRLFRFMRDEDRQVRKLVAKRLP---------------EESLGLMTQDPEPE 177

Query: 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
           VR +                        ++    D  W VR                   
Sbjct: 178 VRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVEH------------- 209

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGK 303
                   +R L + + EVR+A AG+
Sbjct: 210 ---ASLEALRELDEPDPEVRLAIAGR 232

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 67/611 (10%), Positives = 161/611 (26%), Gaps = 82/611 (13%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEEL 71
            +  L + + ++   + + ++ IA          EL+  + +N   +  + V  A    L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159

Query: 72  GVFIPYVGG-----VEHAHVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQMRES 120
           G             V  ++ +L  +      T     VR  A+ +L      I + M   
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC----QDDM 176
              ++ + +V      E    + +A G            +K  +      L     +   
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279

Query: 177 PMVRRSAASNLGKFAATVE------------PAHLKTDIMSIFEDLTQD----------- 213
             V                            P       +S  +D+  +           
Sbjct: 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339

Query: 214 --DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
             D D    ++   C  L         +  +L  +       +WR R         + + 
Sbjct: 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399

Query: 272 VGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL- 327
                        +P+ + L+ D   +V+   A  + +    +   +  Q  LP V +  
Sbjct: 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459

Query: 328 --SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKL 382
                    V +  +  I+ +   L +            +   L+               
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------- 431
                   ++  + ++      ++     ++   +      L  +               
Sbjct: 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579

Query: 432 --------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQH 475
                           D  +G       +     I D     +  LA   G  +   ++ 
Sbjct: 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639

Query: 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDR--VPNIK 531
            +P +L+ +N       +T +  I+ ++  +  +       ++ V+     +      +K
Sbjct: 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELK 699

Query: 532 FNVAKVLQSLI 542
             V  V   + 
Sbjct: 700 PAVLSVFGDIA 710

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 46/348 (13%), Positives = 100/348 (28%), Gaps = 38/348 (10%)

Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEV 296
            A    ++ N        +R     QL +L      +           ++L D   + E 
Sbjct: 3   TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ-----FAGLSSQVLIDENTKLEG 57

Query: 297 RIAAAGKVTKFCRILNPELAIQHILPCVKELS---------------SDSSQHVRSALAS 341
           RI AA  +       +     Q     + ++S                     + +A A 
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQ---- 396
           +I  +A +        +L+ I +     E P+ V+   +  L  + +       +     
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177

Query: 397 -SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LQDKV 449
            ++L AIV+ A+       VRLA +  +      +      +      MQ      Q + 
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             ++ AA   L ++  ++                I              +   + +   E
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297

Query: 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 557
           I  +  L     +               ++ ++P +   +  +   P 
Sbjct: 298 IDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 85/625 (13%), Positives = 171/625 (27%), Gaps = 68/625 (10%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L     N +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEETCVRDKA------VESLCRIGSQMRESDLVDWYI 127
            +      + ++ +L  +      EE     K       + SL    +   +     + +
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQDDMPMVRRSA 183
            +V           RV+A              ++T +     +I  +  + D+  V    
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 184 ASNLGKFAATVEPAHLK------------------------------TDIMSIFEDLTQD 213
                          ++                              T  ++  ++   D
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339

Query: 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCE 270
           D  +    A      L       D V H+LP I    ++  WR R    M    + E  E
Sbjct: 340 DDWNPCKAAGVCLMLLATCC-EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398

Query: 271 AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330
               +P  +  +P  + L++D    VR  AA  V + C +L         L  + +   +
Sbjct: 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458

Query: 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390
                    ++V    + L         +                  I+ KL +      
Sbjct: 459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR-- 516

Query: 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL------GVGFFDDKLGALCMQW 444
            D    +L  +  E   +            +      +       +              
Sbjct: 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ 576

Query: 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLL 502
             D    +     N L+++  +   + +   +   +L M          +   L A+S L
Sbjct: 577 FNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTL 635

Query: 503 APVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK---TIRPC 557
             V+G E         P +    K+         A  L   +    QS +      +   
Sbjct: 636 VEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQL 695

Query: 558 LVELTEDPDV--DVRFFATQAIQSI 580
           L+E   + +V   V+         I
Sbjct: 696 LLENLGNENVHRSVKPQILSVFGDI 720

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 42/271 (15%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +L  D   + R S+A  L              D + +  +   D     R +       L
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAF---IL 74

Query: 230 GKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 288
           G++   + C  ++  ++ N    DKS  VR        + C+          +V      
Sbjct: 75  GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348
             D    VR A A  ++         L I  +     ++ + ++  +             
Sbjct: 133 AFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDC 192

Query: 349 LL-----------------GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391
            +                       +++L +    LK     V  +II    +       
Sbjct: 193 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE------- 243

Query: 392 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 421
            L  ++LLP +   L +     +  + I+ +
Sbjct: 244 -LGDKTLLPVLDTMLYKFDDNEIITSAIDKL 273

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 45/294 (15%), Positives = 88/294 (29%), Gaps = 45/294 (15%)

Query: 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 345
            RLL D+ +  RI++A       R+L      Q  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA-------RVLQ-LRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76

Query: 346 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 466 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 525
               +  ++ +  +  E+                              R+L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 526 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 578
               +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	587
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.94
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.94
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.94
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.92
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.78
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.73
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.7
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.69
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.67
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.65
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.58
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.53
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.37
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.24
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.2
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.18
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.18
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.0
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.82
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.17
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.0
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.61
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.36
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	92.22
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.91
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	91.86
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.31
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	89.17
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	89.11
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	88.94
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.77
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	84.52

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-67  Score=547.58  Aligned_cols=580  Identities=59%  Similarity=0.962  Sum_probs=550.0

Q ss_pred             CCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCc
Q 007842            2 AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV   81 (587)
Q Consensus         2 ~~~~~~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~   81 (587)
                      +|+|+|++|++.|++.|+|+|+.+|..|++.++.++..+|+++++++++|++.+..+++++++..+++.++++..++|++
T Consensus         3 ~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_           3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Confidence            79999999999999999999999999999999999999999999999999999988888899999999999999999999


Q ss_pred             chHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChHHH
Q 007842           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (587)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~  161 (587)
                      ++...+++.+..++.++++.||++|..++..++..++++.+.+.+.|++.++.++++...|..++.+++.++++.++...
T Consensus        83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~  162 (588)
T d1b3ua_          83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhc
Q 007842          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (587)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (587)
                      ..+++.+..+++|+++.||+.++..++.+++..+.+...+.++|.+..+.+|+++.||..++.++..++..++.+.....
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            99999999999999999999999999999999887778889999999999999999999999999999999988777888


Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHH
Q 007842          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAI  317 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  317 (587)
                      ++|.+.++++|++|.||..++++++.++..++.+.....++|.+..+++|.+++||..++.+++.++..++..    .+.
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~  322 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            9999999999999999999999999999998877666789999999999999999999999999999877643    355


Q ss_pred             HhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhh
Q 007842          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       318 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  397 (587)
                      +.++|.+.....|.++.||..++.++..++..+|.+...+.++|.+...++|+++++|..++.+++.+...+|.....+.
T Consensus       323 ~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~  402 (588)
T d1b3ua_         323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS  402 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhH
Confidence            78999999999999999999999999999988898888889999999999999999999999999999999988888889


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 007842          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (587)
Q Consensus       398 ~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  477 (587)
                      ++|.+.+.++|++|++|..+++.++.++..+|.+.+.+.+.|.+..++.|+.+.||.+|+.+++.+++.+|.++..+.++
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~  482 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII  482 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHH
Q 007842          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC  557 (587)
Q Consensus       478 ~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~  557 (587)
                      |.+.++.++++|.+|++++.+++.+.+.++.+.+.+.++|.+.++++|+.++||.+++++++.+...++...+...+.|.
T Consensus       483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~  562 (588)
T d1b3ua_         483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI  562 (588)
T ss_dssp             HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHH
Confidence            99999999999999999999999999998888888999999999999999999999999999999999888888899999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHH
Q 007842          558 LVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       558 l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      +.++.+|+|.+||+.|..|++.|.
T Consensus       563 l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         563 LEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-46  Score=387.39  Aligned_cols=528  Identities=20%  Similarity=0.284  Sum_probs=474.8

Q ss_pred             ccCCcHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc
Q 007842           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (587)
Q Consensus        56 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  135 (587)
                      .-+++..+|..+++.++.++..+|.......++|.+.+++.+++ .|+..+++.++.+....+.......++|.+..++.
T Consensus        19 l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~   97 (588)
T d1b3ua_          19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLAT   97 (588)
T ss_dssp             TTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTT
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcc
Confidence            44577789999999999988878865567889999999887765 57888888888887776655556778898888988


Q ss_pred             CCCCcchhhHHhhhHhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCC
Q 007842          136 GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD  214 (587)
Q Consensus       136 ~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~  214 (587)
                      +++..+|..|+..+..+....+++ ..+.+.|++..+..++....|..++..++.+....+ +.....+++.+..+++|+
T Consensus        98 ~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~-~~~~~~l~~~~~~l~~D~  176 (588)
T d1b3ua_          98 VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDD  176 (588)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhccC
Confidence            888889999999999998888776 556788999999999888899999999888877664 455677899999999999


Q ss_pred             chhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 007842          215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  294 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (587)
                      ++.||..++..++.+++.++.+...+.+.|.+..+.+|+++.||..++.+++.++..++.+.....++|.+..+++|++|
T Consensus       177 ~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~  256 (588)
T d1b3ua_         177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW  256 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccH
Confidence            99999999999999999999887788999999999999999999999999999999887766666789999999999999


Q ss_pred             HHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch----hHHHHhHHHHHHHhhcCC
Q 007842          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~  370 (587)
                      .||..++.+++.++..++.+.....++|.+..++.|+++.+|..++..++.++..++.    ..+.+.++|.+...++|.
T Consensus       257 ~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~  336 (588)
T d1b3ua_         257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA  336 (588)
T ss_dssp             HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred             HHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            9999999999999999998877788999999999999999999999999988876653    235678999999999999


Q ss_pred             ChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCch
Q 007842          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY  450 (587)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  450 (587)
                      ++.||..++.++..+...+|.+...+.++|.+...++|+++.+|..++..++.+...+|...+.+.++|.+...++|.+|
T Consensus       337 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~  416 (588)
T d1b3ua_         337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW  416 (588)
T ss_dssp             CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH
T ss_pred             ChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccH
Confidence            99999999999999999999887778899999999999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhH
Q 007842          451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI  530 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~v  530 (587)
                      .+|.+++..++.++..+|.+++.+.+.|.+...+.|+.+.+|.+|+.+++.+...+|.++....++|.+..+.+|+++.+
T Consensus       417 ~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~  496 (588)
T d1b3ua_         417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH  496 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999998888889999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          531 KFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       531 R~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      |.+++.+++.+...++.+.+.+.++|.+.+++.|++++||..++++|+.+...++
T Consensus       497 R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         497 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999988888889999999999999999999999999999987554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-30  Score=278.43  Aligned_cols=522  Identities=16%  Similarity=0.123  Sum_probs=372.2

Q ss_pred             cHHHHHHHHHHhccccccCCCcchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh-------hHHhhHHHHHHH
Q 007842           60 DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIPLVKR  132 (587)
Q Consensus        60 ~~~v~~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~  132 (587)
                      +..+|..++.+++.++.. .+...++.++|.|.+.+.++++.+|..|+.+|+.+++.....       .....++|.+.+
T Consensus       101 ~~~vr~~~~~~i~~i~~~-~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~  179 (888)
T d1qbkb_         101 SPLIRATVGILITTIASK-GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ  179 (888)
T ss_dssp             CSSTTTTTTTTTHHHHTT-TSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHH-hCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence            334555555555555442 224456778888888888888899999999999888654321       122447777778


Q ss_pred             HhcCCCCcchhhHHhhhHhhcCCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHH
Q 007842          133 LAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIF  207 (587)
Q Consensus       133 l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l  207 (587)
                      ...+++..+|..++..+..+....+.   .....+++.+.....|+++.||..+++++..+....++.  .+.+.+++.+
T Consensus       180 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~  259 (888)
T d1qbkb_         180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM  259 (888)
T ss_dssp             GGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTT
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            88888888888888888766654443   256778888899999999999999999998887665431  2334455666


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHh----------------------------------
Q 007842          208 EDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNF----------------------------------  249 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~----------------------------------  249 (587)
                      ....+|+++.||..|++.+..+++.-..    ....+.+.|.+...                                  
T Consensus       260 l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  339 (888)
T d1qbkb_         260 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHR  339 (888)
T ss_dssp             TTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCC
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence            6677888999999999888766542110    00111122211110                                  


Q ss_pred             --------------------------ccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh
Q 007842          250 --------------------------SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (587)
Q Consensus       250 --------------------------~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (587)
                                                ..+..|.+|..+..+++.++..++++. ...++|.+...+.+++|..|.+|+.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~i-l~~~l~~l~~~l~s~~~~~reaa~~a  418 (888)
T d1qbkb_         340 SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILV  418 (888)
T ss_dssp             CCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSS-HHHHHHHHHHTTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHhhccchhHHHHHHHHH
Confidence                                      011346789999999988887776554 35678888889999999999999999


Q ss_pred             HHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHH
Q 007842          304 VTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       304 l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      ++.+++.+...  .+.+.++|.+...+.|+++.||..+++++++++.....   +.+...+++.+...+.|.++.|+.++
T Consensus       419 lg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a  498 (888)
T d1qbkb_         419 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA  498 (888)
T ss_dssp             HHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHH
T ss_pred             hhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHH
Confidence            99998755432  44578899999999999999999999999998875532   33556788888999999999999999


Q ss_pred             HHhhhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----hHHHHHHHHHHhc-------
Q 007842          379 ISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWL-------  445 (587)
Q Consensus       379 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l-------  445 (587)
                      +.++..+.+..+..  .+.+.+++.+...+.+.+.+.+..+.++++.++...+...    +.+.+.|.+....       
T Consensus       499 ~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  578 (888)
T d1qbkb_         499 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED  578 (888)
T ss_dssp             HHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccch
Confidence            99999998776543  3346667777777777777777777777777765543221    2222222222211       


Q ss_pred             -----------------------------------------------------CCCchHHHHHHHHHHHHHHHHhChHH-
Q 007842          446 -----------------------------------------------------QDKVYSIRDAAANNLKRLAEEFGPEW-  471 (587)
Q Consensus       446 -----------------------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~~-  471 (587)
                                                                           ...+..+...+...++.+.+.+|..+ 
T Consensus       579 ~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~  658 (888)
T d1qbkb_         579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE  658 (888)
T ss_dssp             TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence                                                                 11233444455556666666555432 


Q ss_pred             --H-hhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          472 --A-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       472 --~-~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                        . ...+++.+...+++.++.+|+.+..++|.++..++...  +.+.++|.+...++++.+.++.+++.++|.++...+
T Consensus       659 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~  738 (888)
T d1qbkb_         659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG  738 (888)
T ss_dssp             HHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG
T ss_pred             hhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence              1 23467778888899999999999999999988766542  467799999999999999999999999999998877


Q ss_pred             hH--HHHhhHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHh
Q 007842          547 QS--MVEKTIRPCLVELTEDPD--VDVRFFATQAIQSIDHV  583 (587)
Q Consensus       547 ~~--~~~~~i~~~l~~l~~d~d--~~Vr~~a~~al~~l~~~  583 (587)
                      .+  .+...+++.|.+.+++++  ..|+.+++.++++++..
T Consensus       739 ~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         739 IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            65  455678888888776654  45999999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-25  Score=252.43  Aligned_cols=576  Identities=12%  Similarity=0.141  Sum_probs=421.6

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHhh---ChHhhhhhhhhhhhhcc-CCcHHHHHHHHHHhccccccCCCcc
Q 007842            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL---GEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVE   82 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~---~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~   82 (587)
                      +.|.++.|++.|+|.|++.|++|...|.......   ..+.....+++.+...+ |.+++||..+.++++.++..++ +.
T Consensus         1 ~~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-~~   79 (1207)
T d1u6gc_           1 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EY   79 (1207)
T ss_dssp             CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HH
T ss_pred             CchhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc-Hh
Confidence            3578999999999999999999998776542211   11223346788777755 6678999999999999988776 34


Q ss_pred             hHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh--------hHHhhHHHHHHHHhc-CCCCcchhhHHhhhHhhc
Q 007842           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAY  153 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~  153 (587)
                      ....+++.|...+.+++..+|+.+..+++.+...++..        .+...+.+.+..... .++..++..++.+++.+.
T Consensus        80 ~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          80 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence            56667777777677888999999999999988776532        223344455444443 346677888887777665


Q ss_pred             CCCC---hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          154 PSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       154 ~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                      ...+   ..+...+++.+...+.++++.||+.++.+++.++...+.+.+.+.+-.++..+..+....+|..++.+++.++
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            4443   2356788899999999999999999999999999988765555555555556667777788888999999999


Q ss_pred             hhcChh--hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHH-------------------
Q 007842          231 KLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVR-------------------  287 (587)
Q Consensus       231 ~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~-------------------  287 (587)
                      ...+..  .+.+.++|.+.+.+++++..+|..+..++..++..++....+  ..+++.+..                   
T Consensus       240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~  319 (1207)
T d1u6gc_         240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA  319 (1207)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred             HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhh
Confidence            877653  345778999999999999999999999999998876653221  122222221                   


Q ss_pred             ------------------hcCCChHHHHHHHHHhHHHHHhhhCH--HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccc
Q 007842          288 ------------------LLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (587)
Q Consensus       288 ------------------~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                                        ...|..|.+|..+++++..+....+.  ..+.+.+.|.+...+.|.++.||..+..++..+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         320 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             hhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence                              12345689999999999999876654  2455778899999999999999999999888765


Q ss_pred             cccch---------------------hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh--hHHhhHHHHHHH
Q 007842          348 PLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE  404 (587)
Q Consensus       348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~  404 (587)
                      ...+.                     ....+.+++.+.+.+++.+..+|..++..+..+....+..  .+...+++.+..
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~  479 (1207)
T d1u6gc_         400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF  479 (1207)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred             HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHH
Confidence            33210                     1123456777788889999999999999999988766532  334566777777


Q ss_pred             HhcCC--ChHHHHHHHHHHHHHHHhhChhhhHH---HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH---------
Q 007842          405 LAEDR--HWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---------  470 (587)
Q Consensus       405 ~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------  470 (587)
                      .+.+.  ...+|..++..+..+....+.+.+.+   .+.+.+...+.|+.+.++..+..+++.+...++..         
T Consensus       480 ~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~  559 (1207)
T d1u6gc_         480 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT  559 (1207)
T ss_dssp             HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence            67664  45678888888888887766655443   45677788889999999999999999998876531         


Q ss_pred             HHhhhhHHHHHhhcc--CCchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc
Q 007842          471 WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       471 ~~~~~l~~~l~~~l~--d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  546 (587)
                      .....+++.+...+.  +.+..+|..++.+++.+....|...  ....+++.+...+++  +..|..+++++..+.....
T Consensus       560 ~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~~~  637 (1207)
T d1u6gc_         560 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPL  637 (1207)
T ss_dssp             HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHhcc
Confidence            133455666665554  4567899999999999887665432  356678888887775  4578899999988876433


Q ss_pred             h---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007842          547 Q---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       547 ~---~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~~~  585 (587)
                      .   ..+...+.+.+...+.+.++.+|..+..++..+.+..+
T Consensus       638 ~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~  679 (1207)
T d1u6gc_         638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  679 (1207)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             chhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence            2   34556778888888899999999999999998876544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-26  Score=246.72  Aligned_cols=567  Identities=16%  Similarity=0.119  Sum_probs=366.8

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccCCcH-HHHHHHHHHhcccccc----C---CCcch
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLAMAEELGVFIPY----V---GGVEH   83 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~-~v~~~~~~~l~~l~~~----~---~~~~~   83 (587)
                      +.++..+.++++.+|..+...++.++...++ ..|++++|.+.+.+++.+ .++..+..+++.+.+.    +   .....
T Consensus        91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~  169 (888)
T d1qbkb_          91 SECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP  169 (888)
T ss_dssp             HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence            6677889999999999999999999876554 468899999988665332 3332222222222210    0   01123


Q ss_pred             HhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH--
Q 007842           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (587)
                      ...++|.+.+.+.++++.+|..|+.++..+.......  .....+++.+.....+++..+|..++..+..+....++.  
T Consensus       170 ~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~  249 (888)
T d1qbkb_         170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  249 (888)
T ss_dssp             STTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTT
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHH
Confidence            4567888888888899999999999988876544321  123345566666667777788888888776655433221  


Q ss_pred             -HHHHHHHHHHHhcCCCChHHHHHHHH-----------------------------------------------------
Q 007842          160 -LKTELRSIYTQLCQDDMPMVRRSAAS-----------------------------------------------------  185 (587)
Q Consensus       160 -~~~~l~~~l~~l~~d~~~~vr~~~~~-----------------------------------------------------  185 (587)
                       +...+++.+...+.|++..||..+++                                                     
T Consensus       250 ~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (888)
T d1qbkb_         250 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDS  329 (888)
T ss_dssp             TTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCC
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhh
Confidence             22334444444455555555555544                                                     


Q ss_pred             --------------------------------------------------hHHHHHHhhccchhhhHHHHHHHHhhhCCc
Q 007842          186 --------------------------------------------------NLGKFAATVEPAHLKTDIMSIFEDLTQDDQ  215 (587)
Q Consensus       186 --------------------------------------------------~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~  215 (587)
                                                                        ++..++...+ +...+.+++.+...+.+++
T Consensus       330 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-~~il~~~l~~l~~~l~s~~  408 (888)
T d1qbkb_         330 EQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHE  408 (888)
T ss_dssp             GGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC-SSSHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH-HHHHHHHHHHHHHhhccch
Confidence                                                              3333333322 2344566777777777777


Q ss_pred             hhHHHHHHHHHHHHhhhcCh--hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcC
Q 007842          216 DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLR  290 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~  290 (587)
                      +.+|.+|+.+++.+++.+.+  ....+.++|.+...++|+++.||..++.++++++..+....   ....+++.+...+.
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~  488 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL  488 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc
Confidence            78888888888877765433  12345677777777888888888888888888777554332   23456777777777


Q ss_pred             CChHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch----hHHHHhHHHHHH
Q 007842          291 DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFL  364 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~  364 (587)
                      |.++.||.+|+.++..+.+..+..  .+.+.+++.+...+.+.+...+..+..+++.++...+.    ..+.+.+.|.+.
T Consensus       489 d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            777888888888888777765543  34566677777777777777777777776666554432    234455566555


Q ss_pred             Hhhc---CCChHHHHHHHHhhhhhhhhhchhh--HH----hhHHHHHHHH-------------hcCCChHHHHHHHHHHH
Q 007842          365 SLLK---DEFPDVRLNIISKLDQVNQVIGIDL--LS----QSLLPAIVEL-------------AEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       365 ~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~--~~----~~~l~~l~~~-------------~~~~~~~vR~~~~~~l~  422 (587)
                      ....   +.+ ..+..++++++.+...++...  +.    +.++..+...             ....+......+...++
T Consensus       569 ~~~~~~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  647 (888)
T d1qbkb_         569 QKWNMLKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS  647 (888)
T ss_dssp             HHHTTSCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred             HHHHhcccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            4432   222 233345666666665555321  11    1111111111             12234566667777888


Q ss_pred             HHHHhhChhhh----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCCchhHHHHHH
Q 007842          423 LLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       423 ~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~~R~~a~  496 (587)
                      .+++.+|....    ...+.+.+...++|.++.||..|..+++.++...+...  +.+.++|.+.+.+.++++.++.+++
T Consensus       648 ~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~  727 (888)
T d1qbkb_         648 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT  727 (888)
T ss_dssp             HHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            88877765431    12367888899999999999999999999998776653  4577889998889999999999999


Q ss_pred             HHHHHhhcccChHH--HHhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhhhhchH--HHHhhHHHH-HHHhcCCCCccH
Q 007842          497 RAISLLAPVMGSEI--TCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPC-LVELTEDPDVDV  569 (587)
Q Consensus       497 ~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~-l~~l~~d~d~~V  569 (587)
                      +++|.++...|.+.  +.+.+++.+.+.+++++  ..++.+++.++|.++...+..  .+.+.+++. +..+..-.|.+-
T Consensus       728 ~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~e  807 (888)
T d1qbkb_         728 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEE  807 (888)
T ss_dssp             HHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHH
Confidence            99999998877643  45678888999888754  459999999999998776553  234544443 444444344445


Q ss_pred             HHHHHHHHHHHH
Q 007842          570 RFFATQAIQSID  581 (587)
Q Consensus       570 r~~a~~al~~l~  581 (587)
                      +..|..++..+.
T Consensus       808 k~~~~~g~~~~i  819 (888)
T d1qbkb_         808 KDSAFRGICTMI  819 (888)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655555443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.1e-23  Score=222.91  Aligned_cols=574  Identities=14%  Similarity=0.137  Sum_probs=349.5

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhccC--CcHHHHHHHHHHhccccccCCC--cchHhhh
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGG--VEHAHVL   87 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~l~~~~~~--~~~~~~l   87 (587)
                      +.+++.+.++++.+|..+...++.++....|+..|++++|.+.+...  ++..++..+..+++.+....+.  ..+...+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56778899999999999999999999887777778999999987543  3345666666777766543332  1122233


Q ss_pred             HHHHhhhh-----cchhhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842           88 LPPLETLC-----TVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (587)
Q Consensus        88 ~~~l~~l~-----~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  158 (587)
                      .+++..++     .+.+..+|..|+.++..+...+...    .....+++.+....++++...|..++..+..+.....+
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33332222     3566899999999999987765432    23455677777777888888888888777665543322


Q ss_pred             H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-------------------chhhhHHHHH---------
Q 007842          159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSI---------  206 (587)
Q Consensus       159 ~----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~---------  206 (587)
                      .    ....+..++.....+.++.+|..+.+.+..++.....                   ....+.+.|.         
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2    2233444555666777888888777776665543210                   0011122222         


Q ss_pred             ------------------------------------HHHhhhCCchhHHHHHHHHHHHHhhhcChh---hhhhchHHHHH
Q 007842          207 ------------------------------------FEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIV  247 (587)
Q Consensus       207 ------------------------------------l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~  247 (587)
                                                          +.....++++..|.+++..++.+.......   ...+.+++.+.
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~  417 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL  417 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence                                                223333344444444444444444433321   12334455555


Q ss_pred             HhccCCcHHHHHHHHHHHHHHHHHhCCCcccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH------HHH
Q 007842          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LAI  317 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~  317 (587)
                      ..+.|+++.||..++.+++.++..++......    .+++.+.....+ ++.++..++.++..+.......      ...
T Consensus       418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  496 (861)
T d2bpta1         418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHH
Confidence            55555555566655555555555544322111    222333332222 2344444444444444332211      111


Q ss_pred             HhHhHHHHHhc--cCCcHHHHHHHHHHHHccccccchhH--HHHhHHHHH----HHhhcCCC-----------hHHHHHH
Q 007842          318 QHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF----LSLLKDEF-----------PDVRLNI  378 (587)
Q Consensus       318 ~~i~~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l----~~~l~d~~-----------~~vr~~a  378 (587)
                      ..++..+....  .+.+..+|..+..++..+....+...  +...+.+.+    ...+....           ..++..+
T Consensus       497 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  576 (861)
T d2bpta1         497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            22222233222  23455677777777766665544321  222233332    22222111           2234444


Q ss_pred             HHhhhhhhhhhchh--hHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhh--hHHHHHHHHHHhcCCCchHHH
Q 007842          379 ISKLDQVNQVIGID--LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIR  453 (587)
Q Consensus       379 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      ...+..+....+..  .+.+.+++.+...+. .+++.+|..++.+++.++..+|.++  +.+.++|.+...+.|.+..||
T Consensus       577 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~  656 (861)
T d2bpta1         577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS  656 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHH
Confidence            55555555444322  233556666666554 4567899999999999999887643  457789999999999999999


Q ss_pred             HHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccCC--chhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCCC
Q 007842          454 DAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV  527 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~  527 (587)
                      ..|+.+++.+++..+...  +.+.+++.+.+.+.++  +..+|..++.+++.++...|..+  +.+.++|.+.+.++...
T Consensus       657 ~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~  736 (861)
T d2bpta1         657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP  736 (861)
T ss_dssp             HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            999999999998877653  4567888888887765  46799999999999998887653  46778888887765432


Q ss_pred             -----------hhHHHHHHHHHHHhhhhhchH-----HHHhhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHhhcc
Q 007842          528 -----------PNIKFNVAKVLQSLIPIVDQS-----MVEKTIRPCLVELTEDP----DVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       528 -----------~~vR~~~~~~l~~l~~~~~~~-----~~~~~i~~~l~~l~~d~----d~~Vr~~a~~al~~l~~~~~~  586 (587)
                                 ..+|..++.++..+...+...     .+...+++.+.....|.    +..++..+...++.++..+|+
T Consensus       737 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  815 (861)
T d2bpta1         737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD  815 (861)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence                       247889999988887644321     34456666766666654    567888999999999887764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-22  Score=219.50  Aligned_cols=571  Identities=12%  Similarity=0.108  Sum_probs=382.9

Q ss_pred             cHHHHHHH-hcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc---CCcHHHHHHHHHHhccccccCCC-----
Q 007842           10 PIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN---DDDDEVLLAMAEELGVFIPYVGG-----   80 (587)
Q Consensus        10 ~~~~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~---~~~~~v~~~~~~~l~~l~~~~~~-----   80 (587)
                      .+..+++. +.|+|+++|.+|-+.|..+... .+    ...++.+.+.+   ..+.++|..++-.+.+.......     
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-~~----~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSND-NF----LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-CH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-Cc----hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            35555654 7899999999999999876542 11    23444444422   23457887777777665432110     


Q ss_pred             ----------cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCC-CCcchhhHHhhh
Q 007842           81 ----------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF  149 (587)
Q Consensus        81 ----------~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l  149 (587)
                                ++....+...+.+.+.++++.+|..+..+++.++....++.-+..++|.+.+...++ ....|..++.++
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l  159 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL  159 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                      112223334444556688999999999999999887655544677888887777655 455677788888


Q ss_pred             HhhcCCCChH------HHHHHHHHHHHhc--CCCChHHHHHHHHhHHHHHHhhcc----chhhhHHHHHHHHhhhCCchh
Q 007842          150 HIAYPSAPDI------LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDS  217 (587)
Q Consensus       150 ~~~~~~~~~~------~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~  217 (587)
                      +.++...++.      ....+++.+...+  .+.+..+|..+..+++.+...++.    ....+.+++.+....+++++.
T Consensus       160 ~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  239 (861)
T d2bpta1         160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE  239 (861)
T ss_dssp             HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHH
Confidence            7766544321      2334444444333  456789999999999988776543    234466778888888999999


Q ss_pred             HHHHHHHHHHHHhhhcChh---hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC----------CCc--------
Q 007842          218 VRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----------PEP--------  276 (587)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~----------~~~--------  276 (587)
                      +|..+.+++..++...++.   .....+.++......+.++.+|..+.+.+..++....          ...        
T Consensus       240 ~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (861)
T d2bpta1         240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL  319 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999999998876652   1122344455667778899999999998887765321          100        


Q ss_pred             -cccchHHHHHHhcC-------CChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 007842          277 -TRMDLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (587)
Q Consensus       277 -~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                       ....++|.+...+.       +.++.+|..+..++..+....+... .+.+.+.+.....+.+|..|.+++.+++.+..
T Consensus       320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  398 (861)
T d2bpta1         320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence             01234555555542       3456789999999999888877643 46777888888999999999999999999988


Q ss_pred             ccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh----hHHhhHHHHHHHHh---------------
Q 007842          349 LLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELA---------------  406 (587)
Q Consensus       349 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~---------------  406 (587)
                      ..+..   .+.+.++|.+...+.|.++.||..++.+++.++..++..    .....+++.+....               
T Consensus       399 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~  478 (861)
T d2bpta1         399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII  478 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHH
Confidence            76543   356678899999999999999999999999887765432    11122222222111               


Q ss_pred             -------------------------------cCCChHHHHHHHHHHHHHHHhhChhhh--HHHHHHHH----HHhcCCC-
Q 007842          407 -------------------------------EDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALC----MQWLQDK-  448 (587)
Q Consensus       407 -------------------------------~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l----~~~l~d~-  448 (587)
                                                     .+.++.+|..++.++..++...+....  ...+.+.+    ...+... 
T Consensus       479 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  558 (861)
T d2bpta1         479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                           123344555555555555554443221  11122222    2222111 


Q ss_pred             ----------chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhccC-CchhHHHHHHHHHHHhhcccChHH--HHh
Q 007842          449 ----------VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--TCS  513 (587)
Q Consensus       449 ----------~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~~R~~a~~~l~~l~~~~~~~~--~~~  513 (587)
                                ...++..+..+++.+....+...  +.+.+++.+...+.+ ++..+|..++.+++.++..+|...  +.+
T Consensus       559 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~  638 (861)
T d2bpta1         559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE  638 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                      12344455555555555444332  235566666665544 457799999999999998887653  568


Q ss_pred             hHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhcc
Q 007842          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       514 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .++|.+...++|.++.+|..++.+++.++...+..  .+...+++.+.+.+.++  +.++|..+..+++.+...+|+
T Consensus       639 ~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998877654  45667888887765544  568999999999999887764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-23  Score=230.94  Aligned_cols=570  Identities=14%  Similarity=0.187  Sum_probs=413.6

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhh-ccCCcHHHHHHHHHHhccccccCC----Ccc---
Q 007842           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG----GVE---   82 (587)
Q Consensus        11 ~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~l~~~~~----~~~---   82 (587)
                      ++.+++.+.+.++++|..|++.++.++...+++. ...+++.+.. ..++++..|...+.++..++..++    +..   
T Consensus        47 ~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~  125 (1207)
T d1u6gc_          47 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  125 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHH
Confidence            6888999999999999999999999988776554 4567777765 456666777666666654433221    112   


Q ss_pred             -hHhhhHHHHhhh-hcchhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCCh
Q 007842           83 -HAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (587)
Q Consensus        83 -~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  158 (587)
                       ....+++.+... ...+++.+|..++..+..+...++..  .....+++.+.....++...+|..|+..++.+....++
T Consensus       126 ~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~  205 (1207)
T d1u6gc_         126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  205 (1207)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH
Confidence             223344444433 34677899999999999998877642  22344666666666777788999999999999888876


Q ss_pred             HHHHHHHHH-HHHhcCCCChHHHHHHHHhHHHHHHhhccc--hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh
Q 007842          159 ILKTELRSI-YTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       159 ~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+++. +..+..+.+..+|+.++.+++.++...+..  .+.+.++|.+...++++++.+|..+..++..+...++.
T Consensus       206 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         206 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            644444443 344556777888889999999999887652  35577899999999999999999999999998877664


Q ss_pred             h--hhhhchHHHHHH-------------------------------------hccCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007842          236 Q--DCVAHILPVIVN-------------------------------------FSQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       236 ~--~~~~~l~~~l~~-------------------------------------~~~d~~~~vR~~a~~~l~~~~~~~~~~~  276 (587)
                      +  .+...+++.+..                                     ...|.+|.+|..++++++.++...++..
T Consensus       286 ~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l  365 (1207)
T d1u6gc_         286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  365 (1207)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            2  112222222211                                     1245689999999999999987665432


Q ss_pred             --cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH---------------------HHHHHhHhHHHHHhccCCcH
Q 007842          277 --TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       277 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~i~~~l~~~~~d~~~  333 (587)
                        ....+.|.+...+.|.++.||..++.++..+....+.                     ....+.+++.+.+.+.+.++
T Consensus       366 ~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~  445 (1207)
T d1u6gc_         366 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  445 (1207)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCch
Confidence              2346889999999999999999999999988765431                     11234566777788889999


Q ss_pred             HHHHHHHHHHHccccccch--hHHHHhHHHHHHHhhcCC--ChHHHHHHHHhhhhhhhhhchhh---HHhhHHHHHHHHh
Q 007842          334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA  406 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~  406 (587)
                      .+|..+...+..+....+.  ..+...+++.+...+.+.  ...+|..++..+..+....+.+.   +...+.|.+...+
T Consensus       446 ~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  525 (1207)
T d1u6gc_         446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  525 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHH
Confidence            9999999999888766643  234567778888888765  35688889888888877665442   3456778888888


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhCh---------hhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhChHH--Hh
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEW--AM  473 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~  473 (587)
                      .+++++++..++..++.+...+++         ..+...+.+.+...+  .+.+.++|..++.+++.+....+...  ..
T Consensus       526 ~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~  605 (1207)
T d1u6gc_         526 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL  605 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            999999999999999988877642         112344555555555  46778999999999999998776542  23


Q ss_pred             hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH--
Q 007842          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       474 ~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--  548 (587)
                      ..+++.+.+.+.+  ...|..++.++..++.....   ..+...+++.+...+.+.++.+|..++.++..+....+..  
T Consensus       606 ~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~  683 (1207)
T d1u6gc_         606 PNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT  683 (1207)
T ss_dssp             HHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHhcc--hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch
Confidence            4566666666655  34788999999988764332   3356778899999999999999999999999998876543  


Q ss_pred             -HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007842          549 -MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  583 (587)
Q Consensus       549 -~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~~  583 (587)
                       ...+.+++.+..+.+|.|..++..+..++..+.+.
T Consensus       684 ~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~  719 (1207)
T d1u6gc_         684 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV  719 (1207)
T ss_dssp             HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhh
Confidence             34456777777788999999999999998887654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-20  Score=201.94  Aligned_cols=562  Identities=14%  Similarity=0.104  Sum_probs=380.9

Q ss_pred             cHHHHHHHhhcHHHHHH---------------hhChHhhhhhhhhhhhhccCCcHHHHHHHHHHhccccccCCCcchHhh
Q 007842           22 DIQLRLNSIRRLSTIAR---------------ALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (587)
Q Consensus        22 ~~~~R~~a~~~l~~~~~---------------~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~   86 (587)
                      +...|..|+-.++....               .++ +..++.+...+.+.+.+++.+++.++.+++.++..--..+.++.
T Consensus        50 ~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~-~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpe  128 (876)
T d1qgra_          50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID-ANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPE  128 (876)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTCCTT
T ss_pred             CHHHHHHHHHHHHHHhhccccchhhhhhcccccCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCCccccHH
Confidence            46677777766654321               111 22233333444343333334555667777666543111234667


Q ss_pred             hHHHHhhhhcch--hhHHHHHHHHHHHHHHhhcChhhHH---hhHHHHHHHHhcCC--CCcchhhHHhhhHhhcCCCCh-
Q 007842           87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAPD-  158 (587)
Q Consensus        87 l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~~-  158 (587)
                      ++|.+.+.+.++  ...+|.+++.++..+++.+.++.+.   ..+++.+.....++  ....|..++..+........+ 
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            888877766544  4678999999999999988775543   33555555555433  456777788777666555432 


Q ss_pred             ----HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc---hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhh
Q 007842          159 ----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       159 ----~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (587)
                          .....+++.+...++++++.+|..+++.+..++...+..   ...+.+.+.+.....++.+.++..++..+..++.
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                355678888999999999999999999999999887542   2234466667777778888889888888877765


Q ss_pred             hcCh-----------------------hhhhhchHHHHHHhc-------cCCcHHHHHHHHHHHHHHHHHhCCCccccch
Q 007842          232 LLEP-----------------------QDCVAHILPVIVNFS-------QDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (587)
Q Consensus       232 ~~~~-----------------------~~~~~~l~~~l~~~~-------~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l  281 (587)
                      ....                       ....+.+.|.+....       .+.+|.+|..+..++..++...++.. ...+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~  367 (876)
T d1qgra_         289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHV  367 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHH
T ss_pred             HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh-hhhh
Confidence            3111                       112334555555543       23467799999999999998877544 3457


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch----hH
Q 007842          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DA  354 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~  354 (587)
                      ++.+...+.+++|..|.++...++.+.......   .+...+++.+...+.|+++.||.+++.+++.+++..+.    ..
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  447 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV  447 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHH
Confidence            888888899999999999999999887766543   44567888999999999999999999999998876643    23


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch----------------hhHHhhHHHHHHHHhcC---CChHHHH
Q 007842          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------DLLSQSLLPAIVELAED---RHWRVRL  415 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------------~~~~~~~l~~l~~~~~~---~~~~vR~  415 (587)
                      +...+++.+...+.+ ++.++..++.++..+......                ..+.+.+++.+...+.+   .+..+|.
T Consensus       448 ~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~  526 (876)
T d1qgra_         448 YLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS  526 (876)
T ss_dssp             THHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred             HhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHH
Confidence            456677777777766 588999998888887654321                12234556666666544   3567888


Q ss_pred             HHHHHHHHHHHhhChhh------hHHHHHHHHHHhcCCC------c-----hHHHHHHHHHHHHHHHHhChHHH---hhh
Q 007842          416 AIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDK------V-----YSIRDAAANNLKRLAEEFGPEWA---MQH  475 (587)
Q Consensus       416 ~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~------~-----~~vr~~a~~~l~~l~~~~~~~~~---~~~  475 (587)
                      .+++.+..+......+.      +...+.+.+...+...      .     ...+.....++..+....+.+..   .+.
T Consensus       527 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  606 (876)
T d1qgra_         527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV  606 (876)
T ss_dssp             HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence            88888887776544322      1223334343333221      1     12334445555556555565432   356


Q ss_pred             hHHHHHhhccC--CchhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCC-ChhHHHHHHHHHHHhhhhhchH--
Q 007842          476 ITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       476 l~~~l~~~l~d--~~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~--  548 (587)
                      +++.+..++..  ++..+++.++.+++.++...|...  +.+.++|.+...+++. ++++|..++..++.+....+..  
T Consensus       607 i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~  686 (876)
T d1qgra_         607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII  686 (876)
T ss_dssp             HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhh
Confidence            67777776653  467799999999999988777643  4678899999988765 4679999999999988766543  


Q ss_pred             HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhcc
Q 007842          549 MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS  586 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~--d~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .+...+.+.+.+.++++  ++++|..+..+++.+...+|.
T Consensus       687 ~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~  726 (876)
T d1qgra_         687 PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             hhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH
Confidence            45677888888866654  468999999999999887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-20  Score=202.09  Aligned_cols=568  Identities=15%  Similarity=0.155  Sum_probs=389.2

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhhhhhhhhhhhhcc---CCcHHHHHHHHHHhccccccCCC---cchHh
Q 007842           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN---DDDDEVLLAMAEELGVFIPYVGG---VEHAH   85 (587)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~---~~~~~v~~~~~~~l~~l~~~~~~---~~~~~   85 (587)
                      +.+++.+.+++. .|..++..++.++....|...|++++|.+.+.+   +....++..+..+++.+.+.++.   ..+..
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~  171 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN  171 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            567777877664 566788888888887667677899999998743   23456676777777666543332   23455


Q ss_pred             hhHHHHhhhhc--chhhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842           86 VLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        86 ~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                      .+++.+.+.+.  +++..+|..|+.++.........    ......+++.+.....+++...+..++..+..++....+.
T Consensus       172 ~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~  251 (876)
T d1qgra_         172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            66776666554  34568999999999888765543    2334557777777788888888888888887766554432


Q ss_pred             ----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc-----------------------chhhhHHHHHHHHhhh
Q 007842          160 ----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLTQ  212 (587)
Q Consensus       160 ----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-----------------------~~~~~~l~~~l~~l~~  212 (587)
                          ....+.+++.....+....++..+...+..++.....                       ....+.+.|.+.....
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (876)
T d1qgra_         252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                2244666777778888899998888877766653210                       1223445555554432


Q ss_pred             -------CCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCc---cccchH
Q 007842          213 -------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLV  282 (587)
Q Consensus       213 -------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~l~  282 (587)
                             ++.+.+|..+..++..++...+.. ..+.+++.+.+.+.+++|..|..++..++.+........   ....++
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~  410 (876)
T d1qgra_         332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM  410 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred             hcccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence                   234578999999999998877654 567789999999999999999999999887765433211   223578


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH----HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch------
Q 007842          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------  352 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------  352 (587)
                      +.+...+.|+++.||.+++.+++.+++.++..    .+.+.+++.+...+.+ ++.++..++.++..+......      
T Consensus       411 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~  489 (876)
T d1qgra_         411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVAD  489 (876)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999876542    3345667777777654 688999888888776543210      


Q ss_pred             ----------hHHHHhHHHHHHHhhcCC---ChHHHHHHHHhhhhhhhhhchh------hHHhhHHHHHHHHhcCC----
Q 007842          353 ----------DATIEQLLPIFLSLLKDE---FPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDR----  409 (587)
Q Consensus       353 ----------~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~~~~~----  409 (587)
                                ..+.+.+++.+...+.+.   ...++..+..++..+.......      .+...+++.+...+...    
T Consensus       490 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  569 (876)
T d1qgra_         490 DQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQ  569 (876)
T ss_dssp             SCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence                      123456667777776543   4678888888888877654432      12233444444433221    


Q ss_pred             C-------hHHHHHHHHHHHHHHHhhChhh---hHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHhChHH--Hhhh
Q 007842          410 H-------WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW--AMQH  475 (587)
Q Consensus       410 ~-------~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  475 (587)
                      .       .+.+..+...+..+....+.+.   +.+.+++.+...+.  +++..++..+..+++.++...|..+  +.+.
T Consensus       570 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~  649 (876)
T d1qgra_         570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA  649 (876)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHH
Confidence            1       1233344455555555555433   33567777777765  4567899999999999999887764  4577


Q ss_pred             hHHHHHhhccCC-chhHHHHHHHHHHHhhcccChHH--HHhhHHHHHHhhcCCC--ChhHHHHHHHHHHHhhhhhchH--
Q 007842          476 ITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       476 l~~~l~~~l~d~-~~~~R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--  548 (587)
                      ++|.+...+.+. ++.+|..++.+++.+....+...  +...+++.+.+.++++  ++.+|..++.+++.++..+|..  
T Consensus       650 ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~  729 (876)
T d1qgra_         650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK  729 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhH
Confidence            888888877655 57899999999999987655432  5678889999988775  4689999999999999888764  


Q ss_pred             HHHhhHHHHHHHhcC---CCCc--------cHHHHHHHHHHHHHH
Q 007842          549 MVEKTIRPCLVELTE---DPDV--------DVRFFATQAIQSIDH  582 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~---d~d~--------~Vr~~a~~al~~l~~  582 (587)
                      .+.+.++|.+.+..+   |++.        .+|.....++..+..
T Consensus       730 ~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~  774 (876)
T d1qgra_         730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQ  774 (876)
T ss_dssp             GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888877443   2221        246666666666544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.8e-18  Score=167.16  Aligned_cols=390  Identities=15%  Similarity=0.151  Sum_probs=274.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhC--CchhHHHHHHHHHHHHhhhcCh------
Q 007842          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKLLEP------  235 (587)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~------  235 (587)
                      +..+|..+ .+++.++|..|-+.|..+...-.     +.++..+...+.+  ....+|..|+..+........+      
T Consensus         2 l~~il~~~-~s~d~~~r~~A~~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           2 LITILEKT-VSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             HHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHH-hCcCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            34455444 46789999999999988876421     2233333333333  2457888887777655433221      


Q ss_pred             --------hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC--ChHHHHHHHHHhHH
Q 007842          236 --------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVT  305 (587)
Q Consensus       236 --------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~  305 (587)
                              ......+.+.+.+...+++..+| .++..++.++....+......+++.+...+.+  ..+.++..++.++.
T Consensus        76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  154 (458)
T d1ibrb_          76 QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  154 (458)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                    12344566667777777765544 56777777776644444456788888888765  44778899999999


Q ss_pred             HHHhhhCHH---HHHHhHhHHHHHhcc--CCcHHHHHHHHHHHHccccccch----hHHHHhHHHHHHHhhcCCChHHHH
Q 007842          306 KFCRILNPE---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRL  376 (587)
Q Consensus       306 ~l~~~~~~~---~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  376 (587)
                      .+.......   .....+++.+...+.  +.+..+|..+++++..+......    +.....+.+.+...+.+.++++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (458)
T d1ibrb_         155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  234 (458)
T ss_dssp             HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence            888766543   234566777777665  45688999999999888765532    234456778888889999999999


Q ss_pred             HHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC-----------------------h
Q 007842          377 NIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------V  430 (587)
Q Consensus       377 ~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-----------------------~  430 (587)
                      .++.++..+++..+..   .+.+.+.+.+.....+.+..+|..+++.+..++....                       .
T Consensus       235 ~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
T d1ibrb_         235 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  314 (458)
T ss_dssp             HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHH
Confidence            9999999988766532   2223444555666788889999999988888764321                       0


Q ss_pred             hhhHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhh
Q 007842          431 GFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~  503 (587)
                      ....+.+.|.+...+.       |.++.+|.++..++..++..+|.+ ..+.++|.+.+.+++++|.+|.+++.+++.++
T Consensus       315 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~  393 (458)
T d1ibrb_         315 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  393 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1123445666655542       456779999999999999988866 45778899999999999999999999999998


Q ss_pred             cccChH---HHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchHHH-HhhHHHHHHHh
Q 007842          504 PVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-EKTIRPCLVEL  561 (587)
Q Consensus       504 ~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~i~~~l~~l  561 (587)
                      .....+   .+.+.++|.+...++|+++.||.+|+.++++++..++.... ...+.|.+..+
T Consensus       394 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         394 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             HhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            765432   24678999999999999999999999999999988765432 23344544444

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-18  Score=169.16  Aligned_cols=402  Identities=16%  Similarity=0.162  Sum_probs=262.8

Q ss_pred             hHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHH-hcCC-CCcchhhHHhhhHhhcCCCChHHHHHH
Q 007842           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL-AAGE-WFTARVSACGLFHIAYPSAPDILKTEL  164 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l  164 (587)
                      ++++|...+ ++|..+|..|...|.++...-.++     +++.+... .++. ....|..|+-++........+.     
T Consensus         2 l~~il~~~~-s~d~~~r~~A~~~L~~~~~~~~~~-----~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~-----   70 (458)
T d1ibrb_           2 LITILEKTV-SPDRLELEAAQKFLERAAVENLPT-----FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD-----   70 (458)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH-----
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcCchH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCch-----
Confidence            445565555 678889999999888887643222     22223232 2322 3345555554444433332221     


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHH
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  244 (587)
                                    .+.........    + ++.....+.+.+.....++...+| .++..+..++....+...++.+++
T Consensus        71 --------------~~~~~~~~~~~----l-~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~  130 (458)
T d1ibrb_          71 --------------IKAQYQQRWLA----I-DANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIP  130 (458)
T ss_dssp             --------------HHHHHHHHHHT----S-CHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHH
T ss_pred             --------------hhhHHhhhhcc----C-CHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhH
Confidence                          11111111111    1 122334455555555555554433 455666666555444445777788


Q ss_pred             HHHHhccC--CcHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHhhhCH----
Q 007842          245 VIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNP----  313 (587)
Q Consensus       245 ~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~----  313 (587)
                      .+...+.+  .++.+|..+..+++.++...+....   ...+++.+...+.+  .+..+|..+++++..+......    
T Consensus       131 ~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  210 (458)
T d1ibrb_         131 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK  210 (458)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            87776644  4577888888999888877654332   23467777777754  4578999999999888765432    


Q ss_pred             HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhc
Q 007842          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       314 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  390 (587)
                      ....+.+.+.+...+.++++++|..++.++..+++..+..   ...+.+.+.+.....+.+++++..++..+..++....
T Consensus       211 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~  290 (458)
T d1ibrb_         211 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM  290 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            2344567778888889999999999999999887665432   1223345556667788889999999888877754321


Q ss_pred             h-----------------------hhHHhhHHHHHHHHh-------cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHH
Q 007842          391 I-----------------------DLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  440 (587)
Q Consensus       391 ~-----------------------~~~~~~~l~~l~~~~-------~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  440 (587)
                      .                       ....+.+.|.+.+..       .+.+|.+|..+...+..++...|.+ +.+.+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~  369 (458)
T d1ibrb_         291 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPF  369 (458)
T ss_dssp             HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHH
T ss_pred             HHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHH
Confidence            0                       112344555555543       2456889999999999999988765 45778999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHH
Q 007842          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP  517 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~  517 (587)
                      +...+.+++|.+|.+|+.+++.++...+.+   .+...++|.+...++|+++.+|.+|+.++|.++..++........++
T Consensus       370 i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~  449 (458)
T d1ibrb_         370 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA  449 (458)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence            999999999999999999999988654333   24577899999999999999999999999999987765432233344


Q ss_pred             HHH
Q 007842          518 VVI  520 (587)
Q Consensus       518 ~l~  520 (587)
                      .++
T Consensus       450 ~ll  452 (458)
T d1ibrb_         450 PLL  452 (458)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.9e-17  Score=166.24  Aligned_cols=483  Identities=13%  Similarity=0.062  Sum_probs=310.4

Q ss_pred             cchHhhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhh-H--HhhHHHHHHHHhc-CCCCcchhhHHhhhHhhcCCC
Q 007842           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSA  156 (587)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~  156 (587)
                      .+.....+|.|.+++.+++..+|..|+..+..++..-.... +  ...++|.+..+.. +++...+..++..+..++.+-
T Consensus        12 ~~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            34444567888888889999999999999999876432211 1  1235666655554 445667777888887776432


Q ss_pred             ChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc---hhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 007842          157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (587)
Q Consensus       157 ~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                      ...   .....+|.+..++.++++.++..++.+|+.++...+..   ......+|.+..+++++++.++..++.++..++
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            111   33356788999999999999999999999998764331   123446788888999999999999999999887


Q ss_pred             hhcCh---hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhH
Q 007842          231 KLLEP---QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (587)
Q Consensus       231 ~~~~~---~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (587)
                      ..-..   .......++.+..++. .+...++..++..+..++..-..  .......++.+..++.+++..++..++.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            54221   1122234555555553 45578888888888877532110  112235788899999999999999999999


Q ss_pred             HHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh--H-HHHhHHHHHHHhh--cCCChHHHHHHH
Q 007842          305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--A-TIEQLLPIFLSLL--KDEFPDVRLNII  379 (587)
Q Consensus       305 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l--~d~~~~vr~~a~  379 (587)
                      ..+.............++.+.+++.+.+..++..++.++..++..-...  . .....++.+...+  ....++++..++
T Consensus       252 ~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~  331 (529)
T d1jdha_         252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI  331 (529)
T ss_dssp             HHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHH
Confidence            8887544332223456888899999999999999999999887432211  1 1234556666555  345678999999


Q ss_pred             Hhhhhhhhhhchh------hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhCh--hhhHHHHHHHHHHhcCCCch
Q 007842          380 SKLDQVNQVIGID------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVY  450 (587)
Q Consensus       380 ~~l~~l~~~~~~~------~~~~~~l~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~  450 (587)
                      .++..+.......      ......++.+..++.+ .++.++..++..+..++..-..  .......+|.+..++.+...
T Consensus       332 ~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~  411 (529)
T d1jdha_         332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCH
Confidence            9988877433211      1123346777777665 4567777777777776543211  11112345666666666555


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH--HhhHHHHHHhhcCCCCh
Q 007842          451 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVP  528 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~l~d~~~  528 (587)
                      .++..+..........-+                 -....++..++.++..++........  ....++.+.+++.++++
T Consensus       412 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~  474 (529)
T d1jdha_         412 DTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE  474 (529)
T ss_dssp             HHC-----------CBTT-----------------BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHhhhhhHHhhcc-----------------cchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCH
Confidence            555444332111110000                 01234455566666666543221111  23467889999999999


Q ss_pred             hHHHHHHHHHHHhhhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007842          529 NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  580 (587)
Q Consensus       529 ~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l  580 (587)
                      ++|..++.+|..++..-...  ......++.|.+++.++++.||..|..+|..+
T Consensus       475 ~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999987542221  23345778899999999999999999999876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.9e-16  Score=156.00  Aligned_cols=371  Identities=12%  Similarity=0.113  Sum_probs=258.5

Q ss_pred             HhhhCCchhHHHHHHHHHHHHhhhcCh----hhhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCC---Cccccc
Q 007842          209 DLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRMD  280 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~---~~~~~~  280 (587)
                      +.++++++..+..|+..+..+...-..    ......++|.+.+++++ +++.+|..++.+|..++..-..   ......
T Consensus        20 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~   99 (434)
T d1q1sc_          20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG   99 (434)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhcc
Confidence            345555666666666666655432221    12233467777777754 4577888888888887642111   112346


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhHhHHHHHhccCCc-----HHHHHHHHHHHHccccccc-
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLG-  351 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~~-  351 (587)
                      .+|.+..++.+++..++..++.+|..++..-..  . ......++.+..++...+     ......++..+..++.... 
T Consensus       100 ~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         100 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence            789999999999999999999999988753211  1 122345566666654332     2333445555666554322 


Q ss_pred             --hhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007842          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~  426 (587)
                        .......++|.+..++.+.+++++..++.++..++......   .....++|.+.+++.++++.++..++..+..++.
T Consensus       180 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         180 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence              22345678899999999999999999999999987543211   1224578999999999999999999999988764


Q ss_pred             hhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhccCCchhHHHHHHHHHH
Q 007842          427 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAIS  500 (587)
Q Consensus       427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~  500 (587)
                      .-.   ...+...+++.+..++.+++..+|..++.+++.++....   .......++|.+...+.++++.+|..++.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~  339 (434)
T d1q1sc_         260 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT  339 (434)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHH
Confidence            211   111223345668888999999999999999999875221   11234568999999999999999999999999


Q ss_pred             HhhcccChHHH----HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc---hH-HH-----HhhHHHHHHHhcCCCCc
Q 007842          501 LLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QS-MV-----EKTIRPCLVELTEDPDV  567 (587)
Q Consensus       501 ~l~~~~~~~~~----~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~-~~-----~~~i~~~l~~l~~d~d~  567 (587)
                      ++....+.+..    ...+++.+.++++++++.++..++.++..+.....   .. .+     ...+++.+..+..++++
T Consensus       340 nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~  419 (434)
T d1q1sc_         340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE  419 (434)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSH
T ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence            99877665432    34468999999999999999999999998875321   11 11     22356778889999999


Q ss_pred             cHHHHHHHHHHH
Q 007842          568 DVRFFATQAIQS  579 (587)
Q Consensus       568 ~Vr~~a~~al~~  579 (587)
                      +|+..|.+.+++
T Consensus       420 ~i~~~a~~il~~  431 (434)
T d1q1sc_         420 SVYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4e-15  Score=150.31  Aligned_cols=477  Identities=12%  Similarity=0.046  Sum_probs=291.8

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHhhChHhh---hhhhhhhhhhcc--CCcHHHHHHHHHHhccccccCCCcchH
Q 007842           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHA   84 (587)
Q Consensus        10 ~~~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~p~l~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~   84 (587)
                      .+..|++.|+++|..+|..|+..+..++........   ...++|.+...+  .++.+++..++.+|..+..   +.+..
T Consensus        18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~---~~~~~   94 (529)
T d1jdha_          18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH---HREGL   94 (529)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---SHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CchhH
Confidence            488999999999999999999999988743221111   124577776644  3456788888888877754   12211


Q ss_pred             -----hhhHHHHhhhhcchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCCCCcchhhHHhhhHhhcCCCChH
Q 007842           85 -----HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (587)
Q Consensus        85 -----~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  159 (587)
                           ...+|.|..++.++++.++..|+.+|..++..-+...  ..+                                 
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~---------------------------------  139 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--MAV---------------------------------  139 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH--HHH---------------------------------
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh--hHH---------------------------------
Confidence                 1235677777788889999999999998876543221  000                                 


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc---hhhhHHHHHHHHhh-hCCchhHHHHHHHHHHHHhhhcCh
Q 007842          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....++.+..+++++++.++..++.++..++..-...   ......++.+..++ ..+.+.++..++..+..++..-..
T Consensus       140 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~  219 (529)
T d1jdha_         140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN  219 (529)
T ss_dssp             HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred             HhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccc
Confidence            12335667777888888999999999988887542111   11222344454555 344567888888888877643221


Q ss_pred             --hhhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        .......++.+..++.+++..++..++.++..+.............++.+.+++++++..++..++.++..++..-..
T Consensus       220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~  299 (529)
T d1jdha_         220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence              122344678888889999999999999999888755444444457899999999999999999999999988743211


Q ss_pred             H---HHHHhHhHHHHHhc--cCCcHHHHHHHHHHHHccccccchhH------HHHhHHHHHHHhhcCCC-hHHHHHHHHh
Q 007842          314 E---LAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLSLLKDEF-PDVRLNIISK  381 (587)
Q Consensus       314 ~---~~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~-~~vr~~a~~~  381 (587)
                      .   ......++.+...+  ...++.++..++.++..++.......      .....++.+..++.+.+ ..++..++..
T Consensus       300 ~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~  379 (529)
T d1jdha_         300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence            1   11233455555544  24567889999999988875433211      12345677888887654 5677788888


Q ss_pred             hhhhhhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHH
Q 007842          382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (587)
Q Consensus       382 l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +..+...-...  -.....+|.+.+++.+.+..++.............-+                 -....++..+..+
T Consensus       380 l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~a  442 (529)
T d1jdha_         380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGA  442 (529)
T ss_dssp             HHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcc-----------------cchHHHHHHHHHH
Confidence            88776543211  1113456666666554433333222111100000000                 0112223333333


Q ss_pred             HHHHHHHhChH--HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc--ccChHHHHhhHHHHHHhhcCCCChhHHHHHH
Q 007842          460 LKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       460 l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~  535 (587)
                      +..+.......  ......++.+.+++.++++.+|..++.++..+..  ...........++.+.++++++++.+|..++
T Consensus       443 l~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~  522 (529)
T d1jdha_         443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA  522 (529)
T ss_dssp             HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHH
Confidence            33332211110  0123456677777777777777777777777753  1222223455677788888888888888888


Q ss_pred             HHHHHh
Q 007842          536 KVLQSL  541 (587)
Q Consensus       536 ~~l~~l  541 (587)
                      .+|..|
T Consensus       523 ~aL~~l  528 (529)
T d1jdha_         523 AVLFRM  528 (529)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2e-15  Score=148.51  Aligned_cols=375  Identities=10%  Similarity=0.068  Sum_probs=268.1

Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhcCh---hhh
Q 007842          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---QDC  238 (587)
Q Consensus       167 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~~~  238 (587)
                      -+...+++++++.+..++..+..+...-..+.    ....++|.+.+++++. ++.+|..++.+|..++..-+.   ...
T Consensus        17 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~   96 (434)
T d1q1sc_          17 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV   96 (434)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhh
Confidence            33456788899999999999998876443321    2234678888888654 568999999999998754332   223


Q ss_pred             hhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChH-----HHHHHHHHhHHHHHhh
Q 007842          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-----EVRIAAAGKVTKFCRI  310 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~  310 (587)
                      ....+|.+..++++++..+|..++.++++++..-.   ........++.+..++...+.     .....+...+..++..
T Consensus        97 ~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (434)
T d1q1sc_          97 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  176 (434)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             hccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc
Confidence            45578899999999999999999999999874211   111223566777777654321     2223344455555443


Q ss_pred             hC---HHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchh---HHHHhHHHHHHHhhcCCChHHHHHHHHhhhh
Q 007842          311 LN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       311 ~~---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ..   .......++|.+..++.+.++.++..++.++..++...+..   .....++|.+..++++.++.++..++.++..
T Consensus       177 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~  256 (434)
T d1q1sc_         177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN  256 (434)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhh
Confidence            22   12344678899999999999999999999999987653221   1223578999999999999999999999998


Q ss_pred             hhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 007842          385 VNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAAN  458 (587)
Q Consensus       385 l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  458 (587)
                      ++..-..   ......+++.+..++.+++..+|..++..+..++....   .......++|.++..+.+++..+|..|+.
T Consensus       257 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~  336 (434)
T d1q1sc_         257 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  336 (434)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHH
Confidence            8753221   12234566778888999999999999999988865321   11122346788888999999999999999


Q ss_pred             HHHHHHHHhChHH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc---C-hHHH-----HhhHHHHHHhhcCC
Q 007842          459 NLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---G-SEIT-----CSRLLPVVINASKD  525 (587)
Q Consensus       459 ~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~---~-~~~~-----~~~il~~l~~~l~d  525 (587)
                      +++.+......+.    ....+++.+.+++.++++.++..++.++..+.+..   + ...+     ...+++.+..+..+
T Consensus       337 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~  416 (434)
T d1q1sc_         337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH  416 (434)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC
Confidence            9999988765543    23557899999999999999999999999887532   2 2212     12345667777888


Q ss_pred             CChhHHHHHHHHHHHh
Q 007842          526 RVPNIKFNVAKVLQSL  541 (587)
Q Consensus       526 ~~~~vR~~~~~~l~~l  541 (587)
                      +++++|..+.+.|.+.
T Consensus       417 ~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         417 ENESVYKASLNLIEKY  432 (434)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999998888653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1e-14  Score=146.17  Aligned_cols=370  Identities=11%  Similarity=0.087  Sum_probs=261.9

Q ss_pred             HhhhCCchhHHHHHHHHHHHHhhhc--Ch--hhhhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCC---Cccccc
Q 007842          209 DLTQDDQDSVRLLAVEGCAALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMD  280 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~  280 (587)
                      ..+..++...+..++..+..+...-  ++  ......++|.+..+++ +.++.++..++.+++.++.....   ......
T Consensus        83 ~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g  162 (503)
T d1wa5b_          83 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  162 (503)
T ss_dssp             HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCC
Confidence            3344555555666666665544211  11  1123446777777775 45677888888888887642111   112335


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccc---hhH
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDA  354 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~  354 (587)
                      ++|.+..++.+++.+++..++.+++.++.....  . .....+++.+..++.+.+..++..+++++..++....   ...
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~  242 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS  242 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred             ChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHH
Confidence            788889999888899999999999988754221  1 2234577888889999999999999999998875432   223


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh-
Q 007842          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  430 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-  430 (587)
                      ....++|.+..++.+.+++++..++.++..++.....   ......+++.+..++.++++.++..++.+++.++..-+. 
T Consensus       243 ~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~  322 (503)
T d1wa5b_         243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ  322 (503)
T ss_dssp             HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999988753321   122346788889999999999999999999888743211 


Q ss_pred             --hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 007842          431 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (587)
Q Consensus       431 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~  504 (587)
                        ......+++.+..++.++++.+|..++.+++.++.. ..+    .....++|.+...+.++++.+|..+++++.+++.
T Consensus       323 ~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         323 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence              111234678888999999999999999999998642 111    2346788999999999999999999999999986


Q ss_pred             ccCh--HH----HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch---------H----HH-HhhHHHHHHHhcCC
Q 007842          505 VMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------S----MV-EKTIRPCLVELTED  564 (587)
Q Consensus       505 ~~~~--~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---------~----~~-~~~i~~~l~~l~~d  564 (587)
                      ....  +.    ....+++.+.++++..++.+...++.+|..+......         .    .+ ....+..+..+..+
T Consensus       402 ~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~  481 (503)
T d1wa5b_         402 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN  481 (503)
T ss_dssp             HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC
T ss_pred             cccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcC
Confidence            4321  11    2355788899999999999999999999887643211         0    11 12356667778888


Q ss_pred             CCccHHHHHHHHHHH
Q 007842          565 PDVDVRFFATQAIQS  579 (587)
Q Consensus       565 ~d~~Vr~~a~~al~~  579 (587)
                      ++.+|+..|.+.+.+
T Consensus       482 ~~~~i~~~A~~il~~  496 (503)
T d1wa5b_         482 ENDKIYEKAYKIIET  496 (503)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999998777665543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2e-15  Score=138.52  Aligned_cols=253  Identities=19%  Similarity=0.136  Sum_probs=175.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHH
Q 007842          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      ..+.+.++++|+++.||..|+..|+.+..        +..+|.+.++++|+++.||..++.+|+.+....+...   ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~---~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---NVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH---HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc---chH
Confidence            45566778888888888888888876642        3456778888888888888888888887764433221   222


Q ss_pred             H-HHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHH
Q 007842          361 P-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (587)
Q Consensus       361 ~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  439 (587)
                      + .+..+++|+++.||..++.+++.+...-..  ..+.+++.+...+.|+++.+|..++..++....        +...+
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccch--hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence            2 234456788888888888888877654321  224567777777888888888887776654322        12345


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHH
Q 007842          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l  519 (587)
                      .+..++.+.++.+|..+...++.....      .....+.+...+.++++.+|..+..+++.+..        ...+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHH
Confidence            666777888888888877766544321      12345566677788888999999888887653        4456777


Q ss_pred             HhhcCCCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhc-CCCCccHHHHHHHHHH
Q 007842          520 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT-EDPDVDVRFFATQAIQ  578 (587)
Q Consensus       520 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~d~~Vr~~a~~al~  578 (587)
                      .+.+.|  ++||..++.+|+.+..        +..+|.|.+++ .+.|.+||..|..+|+
T Consensus       225 ~~~l~d--~~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKK--NTVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTS--SSCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCC--hHHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            777775  4588999999988753        25677777744 4567889999888875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.9e-15  Score=136.54  Aligned_cols=255  Identities=16%  Similarity=0.061  Sum_probs=192.0

Q ss_pred             hchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 007842          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  319 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      +.-.+.+.++++|+++.||..|+..|+.+.        .+..+|.+.++++|+++.||..|+.+|+.+.......   +.
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~   86 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DN   86 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cc
Confidence            344566778999999999999999998764        2467899999999999999999999998876433322   22


Q ss_pred             HhHH-HHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhH
Q 007842          320 ILPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       320 i~~~-l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  398 (587)
                      +.+. +..+++|+++.||..++.+++.++..-.  .....+++.+...+.|.++.||..++.+++.+..        +..
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~  156 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KAT  156 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHH
Confidence            2333 3456789999999999999988764322  2345678888999999999999999888877553        345


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 007842          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (587)
Q Consensus       399 l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  478 (587)
                      ++.+..+..+.++.+|..+...+......      .....+.+...+.+.++.+|..+..+++.+.        .+..+|
T Consensus       157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--------~~~~~~  222 (276)
T d1oyza_         157 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLS  222 (276)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHH
T ss_pred             HHHHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhh--------hhhhHH
Confidence            67777888899999988877666543221      1335566777889999999999998887642        245677


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC-CChhHHHHHHHHHH
Q 007842          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  539 (587)
Q Consensus       479 ~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~  539 (587)
                      .+.+.+.|+  .+|..++.+++.++.        +..+|.+..++.+ ++..||..++++|.
T Consensus       223 ~L~~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         223 VLCDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            888877765  489999999999864        4577888887665 57899999998875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=9.7e-14  Score=138.94  Aligned_cols=377  Identities=11%  Similarity=0.086  Sum_probs=268.8

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccch----hhhHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcCh---h
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      ++-+...+++++...+..++..+..+...-..+.    +...++|.+..+++ +.++.++..++.+|..++...+.   .
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444455677788888777777776654322221    22345777777776 44667899999999988754332   1


Q ss_pred             hhhhchHHHHHHhccCCcHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 007842          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                      .....++|.+..++++++..++..++.+++.++..-.   .......+++.+..++.+.+..++..++.++..++....+
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            2334578889999988999999999999999875311   0112335788899999998899999999999998864322


Q ss_pred             ---HHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch---hHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhh
Q 007842          314 ---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       314 ---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  387 (587)
                         ......++|.+..++.+.++.++..++.++..++.....   ......+++.+..++.+.+..++..++.+++.++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence               234467889999999999999999999999988764322   12334578889999999999999999999999875


Q ss_pred             hhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 007842          388 VIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (587)
Q Consensus       388 ~~~~~---~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      ..+..   .....++|.+..++.++++.+|..++.++..++..-.   .......++|.++..+.+.+..||..|+.++.
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHH
Confidence            43321   1224578889999999999999999999988864211   11122346788888889999999999999999


Q ss_pred             HHHHHhCh--HH----HhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---------HHH-----HhhHHHHHHh
Q 007842          462 RLAEEFGP--EW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------EIT-----CSRLLPVVIN  521 (587)
Q Consensus       462 ~l~~~~~~--~~----~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---------~~~-----~~~il~~l~~  521 (587)
                      .+......  +.    ....+++.+.+++...+..+...++.++..+......         ..+     ....+..+..
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHH
Confidence            99874322  21    2356788899999988999999999998887642110         001     1224445555


Q ss_pred             hcCCCChhHHHHHHHHHHHh
Q 007842          522 ASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       522 ~l~d~~~~vR~~~~~~l~~l  541 (587)
                      +..+++..|+..|.+.+...
T Consensus       478 Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHH
Confidence            66677888887777766544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=3e-08  Score=106.74  Aligned_cols=361  Identities=13%  Similarity=0.082  Sum_probs=203.0

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhc------cCCcHHHHHHHHHHHHHHHHHhCCC-------ccccchHH
Q 007842          217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPE-------PTRMDLVP  283 (587)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~------~d~~~~vR~~a~~~l~~~~~~~~~~-------~~~~~l~~  283 (587)
                      ..|..+...+..++...+.. ..+.+.+.+...+      .+.+|..|..++..++.+....+..       .....+.+
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  454 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVL-VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             cHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHH
Confidence            45666666666666554432 2223333333322      2457899999998888876432110       01112333


Q ss_pred             HHHH----hc---CCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccch----
Q 007842          284 AYVR----LL---RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----  352 (587)
Q Consensus       284 ~l~~----~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----  352 (587)
                      .+..    .+   .+..+.+|..++..++.+.....++. .+.+++.+...+.|++..||..++.++..+......    
T Consensus       455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            3332    22   44567899999999999988776654 478899999999999999999999999888754321    


Q ss_pred             ------h---HHHHhHHHHHHHhhcCCChHH-----HHHHHHhhhhhhhhhchh--hHHhhHHHHHHH----HhcC-CCh
Q 007842          353 ------D---ATIEQLLPIFLSLLKDEFPDV-----RLNIISKLDQVNQVIGID--LLSQSLLPAIVE----LAED-RHW  411 (587)
Q Consensus       353 ------~---~~~~~l~~~l~~~l~d~~~~v-----r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~----~~~~-~~~  411 (587)
                            +   .+.+.++..+...+.+.....     ...+..++..+....+..  .+...+++.+..    ..++ .+.
T Consensus       534 ~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  613 (959)
T d1wa5c_         534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP  613 (959)
T ss_dssp             CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             hhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Confidence                  1   233444555555554432221     234667777776665532  122334444433    3333 356


Q ss_pred             HHHHHHHHHHHHHHHhhChhh---hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhccCC
Q 007842          412 RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNP  487 (587)
Q Consensus       412 ~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~  487 (587)
                      ..+..+.+.++.+....+++.   +.+.++|.+...+..........+...+..+....+.- .....+++.+.......
T Consensus       614 ~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  693 (959)
T d1wa5c_         614 RFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWE  693 (959)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGC
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHH
Confidence            777888888998888776554   34667888888877777677777888888777654320 01123444444322212


Q ss_pred             chhHHHHHHHHHHHhhcccChHH-HHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHH-hc
Q 007842          488 HYLYRMTILRAISLLAPVMGSEI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVE-LT  562 (587)
Q Consensus       488 ~~~~R~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~-l~  562 (587)
                      .......+...+..+....+... ....++..+..++.++.  .+..+...++.+...++.+   .+...++..+.+ +.
T Consensus       694 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~  771 (959)
T d1wa5c_         694 LKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQ  771 (959)
T ss_dssp             CTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGG
T ss_pred             HhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHH
Confidence            22223344444444432211100 01335555555665433  2456777788877776544   234444444444 44


Q ss_pred             CCCCccHHHHHHHHHHHHH
Q 007842          563 EDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       563 ~d~d~~Vr~~a~~al~~l~  581 (587)
                      +...+.+.......+..++
T Consensus       772 ~~~~~~~~~~~~~~~~~~~  790 (959)
T d1wa5c_         772 NSKTERYVKKLTVFFGLIS  790 (959)
T ss_dssp             SSCCHHHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHH
Confidence            4455555555555555554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.24  E-value=8.9e-13  Score=113.58  Aligned_cols=184  Identities=20%  Similarity=0.286  Sum_probs=117.7

Q ss_pred             HHhccCCcHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHH
Q 007842          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (587)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  326 (587)
                      ...+.|+.|++|..|++.       .        -+..+..+++|+++.||.++++.|+       .        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a--------~~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------S--------PVEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------S--------CGGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------C--------CHHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHH
Confidence            346678888888766532       0        1234566788888888888876542       1        34667


Q ss_pred             hccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHh
Q 007842          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (587)
Q Consensus       327 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~  406 (587)
                      ++.|+++.||..++..+.               .+.+..+++|+++.||..+++.+..               +.+..++
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~~---------------~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP---------------GRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHSCG---------------GGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhccch---------------hHHHHHh
Confidence            778888888888776531               1234556788888888887765321               1123456


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccC
Q 007842          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (587)
Q Consensus       407 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  486 (587)
                      +|+++.||..++..       .+.        +.+..+++|+++.||..++..++       .        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~-------~~~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHh-------cCH--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            78888888776542       222        33556677888888887765432       1        344566778


Q ss_pred             CchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHH
Q 007842          487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       487 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~  536 (587)
                      ++|.||.++...+       +         +.++..+.|+++.||..+++
T Consensus       198 ~d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         198 PDWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SSHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            8888887776321       1         23455667888888877654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.1e-10  Score=110.12  Aligned_cols=147  Identities=11%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCh-------H-HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhccc
Q 007842          436 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------E-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (587)
Q Consensus       436 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~-~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~  506 (587)
                      ..++.+...+ ...+..++..+..++..+......       . ......+|.+.++++++++.+|..++.+++.++...
T Consensus       283 ~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            4455555544 445677888888887777542211       1 123467899999999999999999999999998643


Q ss_pred             Ch-HHHHhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCC-CCccHHHHHHH
Q 007842          507 GS-EITCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTED-PDVDVRFFATQ  575 (587)
Q Consensus       507 ~~-~~~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d-~d~~Vr~~a~~  575 (587)
                      .. +......+|.++.++.+      +++.++..++.+|..+....+..   ......++.|.+++.+ .++.++..|+.
T Consensus       363 ~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~  442 (457)
T d1xm9a1         363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            32 22345567778877643      34579999999999988543322   2334567888887654 56789999999


Q ss_pred             HHHHHHH
Q 007842          576 AIQSIDH  582 (587)
Q Consensus       576 al~~l~~  582 (587)
                      +|..+.+
T Consensus       443 ~L~~L~~  449 (457)
T d1xm9a1         443 LLSDMWS  449 (457)
T ss_dssp             HHHTTSS
T ss_pred             HHHHHHc
Confidence            9998753

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.20  E-value=1.7e-12  Score=111.82  Aligned_cols=185  Identities=19%  Similarity=0.243  Sum_probs=134.5

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHH
Q 007842          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS  365 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  365 (587)
                      ..++.|+.+++|..|++.       .+        +..+..+++|+++.||..++..++       .        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHH
Confidence            446889999999777652       11        345677899999999999987543       1        23567


Q ss_pred             hhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhc
Q 007842          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      +++|.+..||..++..+..               +.+..++.|++|.||..+++.+       +.        +.+..++
T Consensus        98 L~~D~d~~VR~~aa~~l~~---------------~~L~~Ll~D~d~~VR~~aa~~~-------~~--------~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLPL---------------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSCT---------------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HhcCCChhHHHHHHhccCH---------------HHHHHHhcCCCHHHHHHHHhcc-------ch--------hHHHHHh
Confidence            7899999999999876531               1234467899999999987642       22        2345677


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCC
Q 007842          446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD  525 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d  525 (587)
                      +|+++.||.+++..       .+.        +.+..+.+|+++.+|..++..++       .        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~-------~~~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHh-------cCH--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            99999999987753       232        34567789999999999886542       1        467788999


Q ss_pred             CChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007842          526 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA  576 (587)
Q Consensus       526 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~a  576 (587)
                      +++.||..+++.++                +.+...+.|+|++||..|.+.
T Consensus       198 ~d~~VR~aaae~~~----------------~~ll~~L~D~d~~VR~aA~~~  232 (233)
T d1lrva_         198 PDWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAGR  232 (233)
T ss_dssp             SSHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcc----------------HHHHHHhCCCCHHHHHHHHHh
Confidence            99999999875321                223345689999999998753

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.18  E-value=1.4e-12  Score=99.97  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=91.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcC
Q 007842          445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  524 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~  524 (587)
                      |+|+++.||..|+.+|+.+    |.     ..++.+.+.++|+++.+|..++.+++.+..        ...+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            5788999999998888753    32     346777888999999999999999987653        456788899999


Q ss_pred             CCChhHHHHHHHHHHHhhhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007842          525 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  579 (587)
Q Consensus       525 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~  579 (587)
                      |+++.||..++.+|+.+..        ....|.|..+++|+++.||..|..+|++
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            9999999999999998853        3678888889999999999999998863

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=1.5e-07  Score=101.22  Aligned_cols=479  Identities=10%  Similarity=0.070  Sum_probs=260.3

Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh-cCC-CCcchhhHHhhhHh----hcC------CCChHHHHHH
Q 007842           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGE-WFTARVSACGLFHI----AYP------SAPDILKTEL  164 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~~~-~~~~r~~a~~~l~~----~~~------~~~~~~~~~l  164 (587)
                      +-++..|+.|-..|..+..+  |+     +...+..+. ++. ...+|..|+-.+..    .+.      ..+++.+..+
T Consensus        14 s~~~~~~k~Ae~~L~~~~~~--p~-----f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~I   86 (959)
T d1wa5c_          14 SVIASTAKTSERNLRQLETQ--DG-----FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI   86 (959)
T ss_dssp             TTSGGGHHHHHHHHHHHHTS--TT-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHcC--CC-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHH
Confidence            34666899999999887443  21     222223333 333 44678776655532    222      2556677777


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChh--------
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--------  236 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------  236 (587)
                      ...+..++.+++..+|..++.+++.++..-.+ ..++.++|.+.+.+++++...+..++.++..+.+.+...        
T Consensus        87 k~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p-~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~  165 (959)
T d1wa5c_          87 KKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL  165 (959)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc-cccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHh
Confidence            77777777778899999999999999987544 456889999999999888888899999999888654321        


Q ss_pred             ---hhhhchHHHHHHhc-------c-CCc-HHHHHHHHHHH---HHHHHHhCCCcc-------ccchHHHHHHhcCCC--
Q 007842          237 ---DCVAHILPVIVNFS-------Q-DKS-WRVRYMVANQL---YELCEAVGPEPT-------RMDLVPAYVRLLRDN--  292 (587)
Q Consensus       237 ---~~~~~l~~~l~~~~-------~-d~~-~~vR~~a~~~l---~~~~~~~~~~~~-------~~~l~~~l~~~l~d~--  292 (587)
                         ...+.+.+.+..++       . ... ...-......+   .++.........       ...+...+...+...  
T Consensus       166 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  245 (959)
T d1wa5c_         166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNP  245 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccc
Confidence               11122333332222       1 111 11111111111   111111111100       112233333333211  


Q ss_pred             -------------hHHHHHHHHHhHHHHHhhhCHH--HHHHhHhHHHHHhc----c-CCcHHHHHHHHHHHHccccccc-
Q 007842          293 -------------EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS----S-DSSQHVRSALASVIMGMAPLLG-  351 (587)
Q Consensus       293 -------------~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~----~-d~~~~vr~~a~~~l~~l~~~~~-  351 (587)
                                   ...++......+..+.+..+..  .+.+.+++.+.+.+    . .....+...++..+..+..... 
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  325 (959)
T d1wa5c_         246 LLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY  325 (959)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH
T ss_pred             cccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHH
Confidence                         1246666777776666554332  22233333333322    2 2334555566655555443221 


Q ss_pred             -----hhHHHHhHH-HHHHHhhc-----------------------CCChHHHHHHHHhhhhhhhhhchhhHHhhHHHHH
Q 007842          352 -----KDATIEQLL-PIFLSLLK-----------------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (587)
Q Consensus       352 -----~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  402 (587)
                           .......++ +.+...+.                       +.....|..+...+..++...+... .+.+.+.+
T Consensus       326 ~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i  404 (959)
T d1wa5c_         326 FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV-TNIFLAHM  404 (959)
T ss_dssp             HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH-HHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccc-hHHHHHHH
Confidence                 111111111 22222211                       1122356667777777776554332 23344444


Q ss_pred             HHHh------cCCChHHHHHHHHHHHHHHHhhCh-----------hhhHHHHHHHHHHhc---CCCchHHHHHHHHHHHH
Q 007842          403 VELA------EDRHWRVRLAIIEYIPLLASQLGV-----------GFFDDKLGALCMQWL---QDKVYSIRDAAANNLKR  462 (587)
Q Consensus       403 ~~~~------~~~~~~vR~~~~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~  462 (587)
                      .+.+      .+.+|..|.+++..++.+....+.           ..+.+.+.+.+...+   .++...+|..++.+++.
T Consensus       405 ~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~  484 (959)
T d1wa5c_         405 KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT  484 (959)
T ss_dssp             HHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence            3332      246899999999999888643210           112233333333333   45667899999999999


Q ss_pred             HHHHhChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh----------H---HHHhhHHHHHHhhcCCCChh
Q 007842          463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----------E---ITCSRLLPVVINASKDRVPN  529 (587)
Q Consensus       463 l~~~~~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~----------~---~~~~~il~~l~~~l~d~~~~  529 (587)
                      +......+ ....+++.+...+.|++..+|..|+.++..+......          +   .+.+.++..+...+.+....
T Consensus       485 ~~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~  563 (959)
T d1wa5c_         485 FRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS  563 (959)
T ss_dssp             TGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC
T ss_pred             HHhhccHH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcch
Confidence            88766655 3467899999999999999999999999999763321          1   12344555555555443322


Q ss_pred             -----HHHHHHHHHHHhhhhhchH--HHHhhH----HHHHHHhcCC-CCccHHHHHHHHHHHHHHhhc
Q 007842          530 -----IKFNVAKVLQSLIPIVDQS--MVEKTI----RPCLVELTED-PDVDVRFFATQAIQSIDHVMM  585 (587)
Q Consensus       530 -----vR~~~~~~l~~l~~~~~~~--~~~~~i----~~~l~~l~~d-~d~~Vr~~a~~al~~l~~~~~  585 (587)
                           .+..++.++..++..++..  .+...+    .+.+....++ .++.....+..+++.+.+..+
T Consensus       564 ~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~  631 (959)
T d1wa5c_         564 PEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ  631 (959)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcC
Confidence                 2345778888877766543  233333    3444444433 345566666677777665443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.7e-09  Score=104.06  Aligned_cols=380  Identities=11%  Similarity=0.007  Sum_probs=200.4

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhcc---chhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcCh---hhh
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDC  238 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  238 (587)
                      +|.+.++++++++.+|..++.+|+.++..-..   .......+|.+..+++++++.+|..++.+|..++...+.   ...
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            67788888888888888888888888753211   112333567788888888888888888888888743222   111


Q ss_pred             hhchHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHh---------------cCCChHHHHHHH
Q 007842          239 VAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRL---------------LRDNEAEVRIAA  300 (587)
Q Consensus       239 ~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~---------------l~d~~~~vr~~a  300 (587)
                      ....++.+.+++ ++.++.+|..++.++..++.......  ....+.+.+...               ....+..++..+
T Consensus        84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  163 (457)
T d1xm9a1          84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHH
Confidence            222345555544 45677888888888888775322110  001111111111               123457788888


Q ss_pred             HHhHHHHHhhhCHHHH---HHhHhHHHHHhccCCcH------HHHHHHHHHHHccccccchhH--HHH---------hHH
Q 007842          301 AGKVTKFCRILNPELA---IQHILPCVKELSSDSSQ------HVRSALASVIMGMAPLLGKDA--TIE---------QLL  360 (587)
Q Consensus       301 ~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~------~vr~~a~~~l~~l~~~~~~~~--~~~---------~l~  360 (587)
                      +.++..+.........   ...+++.+..++.+...      .....+...+...........  ...         ...
T Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (457)
T d1xm9a1         164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE  243 (457)
T ss_dssp             HHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred             HHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Confidence            8887776543221110   01234444444332111      111111112211111100000  000         000


Q ss_pred             HHHHHhhcCCChHHH-HHHHHhhhhhhhhhc--hhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChh-----
Q 007842          361 PIFLSLLKDEFPDVR-LNIISKLDQVNQVIG--IDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG-----  431 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~-----  431 (587)
                      ......+........ ..+...+........  ........++.+..+. ...+..++..+...+..+.......     
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  323 (457)
T d1xm9a1         244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS  323 (457)
T ss_dssp             ----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHH
Confidence            000001111101111 111111111111000  0111223455555544 3456777777777776665322110     


Q ss_pred             ---hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCh-HHHhhhhHHHHHhhccC------CchhHHHHHHHHHHH
Q 007842          432 ---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINN------PHYLYRMTILRAISL  501 (587)
Q Consensus       432 ---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d------~~~~~R~~a~~~l~~  501 (587)
                         ......+|.+..++.++++.+|..++.+++.+...... +.+....+|.+..++.+      ++..++..++.++.+
T Consensus       324 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~  403 (457)
T d1xm9a1         324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN  403 (457)
T ss_dssp             HHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHH
Confidence               01123578889999999999999999999998753222 22345567777777643      245799999999999


Q ss_pred             hhcccChHH---HHhhHHHHHHhhcCC-CChhHHHHHHHHHHHhhhh
Q 007842          502 LAPVMGSEI---TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       502 l~~~~~~~~---~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~  544 (587)
                      +........   .....++.+.+++.+ .++.++.+|+.+|..++.+
T Consensus       404 l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            985443211   234567888888765 4678999999999998643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.00  E-value=5.2e-11  Score=91.02  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             CCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcC
Q 007842          290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (587)
                      +|+++.||..|+.+|+.+.    +     ..++.+.+.+.|+++.||..++.+++.+..        ...+|.+..+++|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~----~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG----D-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS----S-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC----H-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhcc
Confidence            4555555555555554332    1     123334455555555555555555554431        1234445555555


Q ss_pred             CChHHHHHHHHhhhhhhhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007842          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~vR~~~~~~l  421 (587)
                      +++.||..++.+|+.+..        +...|.+..+++|+++.+|..++.+|
T Consensus        65 ~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            555555555555555432        23444555555555555555555444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.4e-08  Score=87.61  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhcc-CCchhHHHHHHHHHHHhhcccChH---HH
Q 007842          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE---IT  511 (587)
Q Consensus       439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~~R~~a~~~l~~l~~~~~~~---~~  511 (587)
                      +++..++++++..+|..|+.+++.++.....   .......+|.++.++. ++++.+|..++.+++.++......   ..
T Consensus        62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  141 (264)
T d1xqra1          62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL  141 (264)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHH
Confidence            3344567788888888888888888853221   1234567888888774 567788888888888887654332   13


Q ss_pred             HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007842          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  582 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~~  582 (587)
                      ....++.+.++++++++.++..++.+|..++...+..   ......+|.|..+++++++++|..|..+|..+..
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            4556788888888888888888888888887543321   2344578888888888888888888888887753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.2e-07  Score=84.70  Aligned_cols=174  Identities=9%  Similarity=0.014  Sum_probs=113.0

Q ss_pred             hHHHHHHHHhhhhhhhhhchhh--H-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhhHHHHHHHHHHhc
Q 007842          372 PDVRLNIISKLDQVNQVIGIDL--L-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWL  445 (587)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~--~-~~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l  445 (587)
                      .+.|..|+.+|..++.......  . ...+.+.+..+++++++.+|..++.+++.++..-.   ........+|.++.++
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL  110 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  110 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence            3445555555555543322110  0 01222233345666777777777777777765321   1112234567777777


Q ss_pred             -CCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HHHHhhHHHH
Q 007842          446 -QDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPV  518 (587)
Q Consensus       446 -~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~il~~  518 (587)
                       .+.++.+|..++.+++.++......   +.....++.+..++.+++..++..++.++.+++...+.   .......+|.
T Consensus       111 ~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         111 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence             4677889999999998887643321   23455688888888888999999999999998754332   1234457899


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          519 VINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       519 l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      +..+++++++.+|..++.+|..++...
T Consensus       191 L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         191 LVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999987643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.17  E-value=0.00041  Score=62.75  Aligned_cols=160  Identities=11%  Similarity=0.041  Sum_probs=100.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHhCC--Cccccch----HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHH
Q 007842          253 KSWRVRYMVANQLYELCEAVGP--EPTRMDL----VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (587)
Q Consensus       253 ~~~~vR~~a~~~l~~~~~~~~~--~~~~~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  326 (587)
                      .++.+|..+.-++|.++...-.  ......+    ...+.+..+..+.+-+..++++|++++.        +..++.+..
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~  210 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR  210 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHH
Confidence            4788999999999999875421  2223333    3344444455666667778888888763        334555555


Q ss_pred             hccC-------CcHHHHHHHHHHHHccccccchhHHHHhHHHHHHHhhcCCChHHHHHHHHhhhhhhhhhchhhHHhhHH
Q 007842          327 LSSD-------SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       327 ~~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  399 (587)
                      .+.+       ....+|.+++.++..++... +....+.+.+++.+  ...+.++|..|+..+-..-+.       ...+
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~-------~~~l  280 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPS-------VALV  280 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCC-------HHHH
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCC-------HHHH
Confidence            5532       35789999999998887543 22334455555554  445689999998887654332       2234


Q ss_pred             HHHHHH-hcCCChHHHHHHHHHHHHHHHhhCh
Q 007842          400 PAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV  430 (587)
Q Consensus       400 ~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~  430 (587)
                      ..+... -.+++..|+..+...+..+++.-.+
T Consensus       281 ~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         281 SMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence            444443 3567888877777777776664433

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.00  E-value=0.00035  Score=63.20  Aligned_cols=160  Identities=13%  Similarity=0.037  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhC------hhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q 007842          398 LLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (587)
Q Consensus       398 ~l~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ++..+.+++++    .++.+|..++-.++.++....      .+.+.+.+...+.......+..-+..++++||++..  
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  201 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  201 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--
Confidence            34444455443    467777777777777765531      223345555666666667777777788888887642  


Q ss_pred             ChHHHhhhhHHHHHhhccCC-------chhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842          468 GPEWAMQHITPQVLEMINNP-------HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       468 ~~~~~~~~l~~~l~~~l~d~-------~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  540 (587)
                            +..++.+..++.+.       ...+|.+|++++..+.... +..+.+.+++.+.+  .+.++++|.+|...+-.
T Consensus       202 ------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         202 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             ------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence                  34566666665432       4579999999999887643 33344555555554  34578899998888865


Q ss_pred             hhhhh-------------chHHHHhhHHHHHHHhcCCCCcc
Q 007842          541 LIPIV-------------DQSMVEKTIRPCLVELTEDPDVD  568 (587)
Q Consensus       541 l~~~~-------------~~~~~~~~i~~~l~~l~~d~d~~  568 (587)
                      .-+..             ....+.+.+...|..+.+.++|.
T Consensus       273 t~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         273 SKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             TCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            42221             11234556666666666555553

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.48  Score=40.54  Aligned_cols=142  Identities=16%  Similarity=0.255  Sum_probs=95.3

Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHh---ChHHHh---hhhHHHHHhhccCCchhHHHHHHHHHHHhhcccC-hHHH--
Q 007842          441 CMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT--  511 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~---~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~-~~~~--  511 (587)
                      ++.+++.++.+|-.-|..++..+....   ..+++.   +.++.....++.++|+-+|..+++.+|.+.-.-. ...+  
T Consensus       160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~  239 (330)
T d1upka_         160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK  239 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            556778899999888888888887532   223322   4566667778899999999999999999974211 1111  


Q ss_pred             ---HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhc--hH------HHHhhHHHHHHHhcCCCCccHHHH--HHHHHH
Q 007842          512 ---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QS------MVEKTIRPCLVELTEDPDVDVRFF--ATQAIQ  578 (587)
Q Consensus       512 ---~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~------~~~~~i~~~l~~l~~d~d~~Vr~~--a~~al~  578 (587)
                         ...-+..+..+++|++.+++..|...+..++..-.  ++      .-.+.++..+..+..|...|-++.  -...+.
T Consensus       240 Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI~  319 (330)
T d1upka_         240 YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVK  319 (330)
T ss_dssp             HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHHH
Confidence               14457788899999999999999988887764321  11      123567778888877763333333  333444


Q ss_pred             HHHH
Q 007842          579 SIDH  582 (587)
Q Consensus       579 ~l~~  582 (587)
                      +|.+
T Consensus       320 ~I~~  323 (330)
T d1upka_         320 QIRD  323 (330)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            4443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=1.6  Score=39.78  Aligned_cols=112  Identities=9%  Similarity=-0.046  Sum_probs=52.2

Q ss_pred             HHHHHHhhccchhhhHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccCCcHHHHHHHHHHHH
Q 007842          187 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY  266 (587)
Q Consensus       187 l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~  266 (587)
                      +-.+......++..++++.++..|+.++....  .....+.    . .    .....+.+...++.+++.+-..+...+.
T Consensus        79 ~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~--~~~~~~~----~-~----~~~~~~~f~~~l~~~d~~~~~~s~~i~~  147 (477)
T d1ho8a_          79 LIHLLSTSDNEDCKKSVQNLIAELLSSDKYGD--DTVKFFQ----E-D----PKQLEQLFDVSLKGDFQTVLISGFNVVS  147 (477)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSH--HHHHHHH----H-C----TTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHHhcCcchh--HHHHHHh----h-C----ccchhHHHHHhccCchhHHHHHHHHHHH
Confidence            33344444455666667777777776654311  1111111    1 1    1223344455555556666666666665


Q ss_pred             HHHHHhCCCccccc----hHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007842          267 ELCEAVGPEPTRMD----LVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (587)
Q Consensus       267 ~~~~~~~~~~~~~~----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      .++..-.......+    ....+..+....+......++.++..+..
T Consensus       148 ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr  194 (477)
T d1ho8a_         148 LLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV  194 (477)
T ss_dssp             HHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc
Confidence            55432111111111    12222333344555666667777766654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=2.1  Score=36.56  Aligned_cols=183  Identities=9%  Similarity=0.035  Sum_probs=115.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-Chh-----hh--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh-
Q 007842          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-  467 (587)
Q Consensus       397 ~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-  467 (587)
                      .++..+...+..-++..|..+...+..+.+.- |..     ..  .+.++..++....+++...  .+-..|...++.- 
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREcik~e~  146 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHEP  146 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHHhhHH
Confidence            44555555566667777777777776665431 211     11  1346666777666655432  2222333333211 


Q ss_pred             -ChHHHhhhhHHHHHhhccCCchhHHHHHHHHHHHhhcccCh---HH---HHhhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 007842          468 -GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       468 -~~~~~~~~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  540 (587)
                       ..-.+...-+-.+.+....++..+-.-|...+..+......   ++   ..+.++..+.+++.++++.+|..+++.|+.
T Consensus       147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLge  226 (330)
T d1upka_         147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE  226 (330)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence             11112233455566788889999988898888887654321   11   135567777889999999999999999999


Q ss_pred             hhhhhchHH----HH--hhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007842          541 LIPIVDQSM----VE--KTIRPCLVELTEDPDVDVRFFATQAIQSID  581 (587)
Q Consensus       541 l~~~~~~~~----~~--~~i~~~l~~l~~d~d~~Vr~~a~~al~~l~  581 (587)
                      +...-....    +.  ..-+..+..++.|...+|+.-|-..++-+.
T Consensus       227 lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV  273 (330)
T d1upka_         227 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  273 (330)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence            985432221    11  356788889999999999999998887553

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.22  E-value=2.3  Score=34.33  Aligned_cols=136  Identities=7%  Similarity=-0.017  Sum_probs=85.6

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhhhhhchHHHHHHhccC-CcHHHHHHHHHHHHHHHHHhCCCcccc
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRM  279 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~  279 (587)
                      +.+...+..+.+.+..+.|..|+..+.........     ..++.+...+.+ ++|.+-...+..++.....     .+.
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-----~~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-----hhh
Confidence            45566666666777778888888877665544332     223444444443 4677766666555433321     134


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhHhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 007842          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .+.+.+....+|++.-+|..++.+.-........    ..++..+..+..|++..||.+...+|..++..-
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~~----~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcccH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence            5667788888888866666665544333222222    445677778888999999999999998887543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=1.7  Score=32.63  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhhh
Q 007842          476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       476 l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+..+..-++++++.+...|+..+..+.+++|..+.    ...++..+.++++.      .+..||..++..+..+...+
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            344455556777777888888888888888887653    35566667666653      46679988998888887766


Q ss_pred             ch
Q 007842          546 DQ  547 (587)
Q Consensus       546 ~~  547 (587)
                      +.
T Consensus       126 p~  127 (145)
T d1ujka_         126 PE  127 (145)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=1.8  Score=32.30  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhh
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~  544 (587)
                      ..+..+..-++++++.+...|+..+..+.+++|..+.    ...++..+.+++..      .++.||..++..+..+...
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3455566667888999999999999999999998763    35677788887764      4678999999999999888


Q ss_pred             hchHHHHhhHHHHHHH
Q 007842          545 VDQSMVEKTIRPCLVE  560 (587)
Q Consensus       545 ~~~~~~~~~i~~~l~~  560 (587)
                      ++...-.......|..
T Consensus       118 f~~~~~~~~~y~~Lk~  133 (143)
T d1mhqa_         118 FPEDIKIRDAYQMLKK  133 (143)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHH
Confidence            7654333334444433

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.31  E-value=0.21  Score=37.88  Aligned_cols=74  Identities=9%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcC-CCChhHHHHHHHHHHHhhhhhchH
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~  548 (587)
                      ..+..+.+-++++++.+...|+..+..+.+.+|..+.    ...++..+.++.+ .++..||..++..+..+...++.+
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4556666777889999999999999999998887643    3445566655553 347789999999999998877654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=2.1  Score=32.25  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHH----HhhHHHHHHhhcCC------CChhHHHHHHHHHHHhhhh
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~~  544 (587)
                      ..+..+..-++++++.+...|+..+..+.+++|..+.    ...++..+.++++.      .+..||..++..+..+...
T Consensus        39 ~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~  118 (151)
T d1juqa_          39 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            3444555556777788888888888888888877653    34466677776653      3667999999999999887


Q ss_pred             hchHHHHhhHHHHHHH
Q 007842          545 VDQSMVEKTIRPCLVE  560 (587)
Q Consensus       545 ~~~~~~~~~i~~~l~~  560 (587)
                      ++.......+...|..
T Consensus       119 f~~~~~~~~~Y~~Lk~  134 (151)
T d1juqa_         119 LPEEAKIKDAYHMLKR  134 (151)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH
Confidence            7544333344444433

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.11  E-value=3.6  Score=33.16  Aligned_cols=136  Identities=9%  Similarity=0.013  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhChHHHhh
Q 007842          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQ  474 (587)
Q Consensus       396 ~~~l~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~  474 (587)
                      +.+...+..+..++.-..|..++..+.......     .+..++.+..++.+ ++|.+-...+..++......     .+
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-----~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hh
Confidence            455556666677777788888877765544332     23445666666654 44666665544443322221     13


Q ss_pred             hhHHHHHhhccCCchhHHHHHHHHHHHhhcccChHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhh
Q 007842          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       475 ~l~~~l~~~l~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  545 (587)
                      .+.+.+.....+.+..+|..++-+.-.....-.    ...++..+..+..|+..-||.++..+|..++...
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~----~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence            455677777888887777776544322222221    2556778888889999999999999999887663

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.94  E-value=8.1  Score=35.03  Aligned_cols=67  Identities=10%  Similarity=0.032  Sum_probs=32.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhccc-hh---hhHHHHHHHHhhhCCchhHHHHHHHHHHHHhh
Q 007842          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-HL---KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (587)
Q Consensus       165 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-~~---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (587)
                      .+.+..+++.+++.+-..++..+..++..-... ..   .......+..+.+..+......+++++..+..
T Consensus       124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr  194 (477)
T d1ho8a_         124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV  194 (477)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc
Confidence            344445555555666556555555554432111 11   11122333444444455555566666666553

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.77  E-value=4.1  Score=30.39  Aligned_cols=87  Identities=6%  Similarity=-0.038  Sum_probs=53.2

Q ss_pred             hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcChhh----hhhchHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHhCCC
Q 007842          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE  275 (587)
Q Consensus       201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~  275 (587)
                      ......+..-+++.++.+...|+..+..+...+++..    ....++..+.++.+ .++..||..+++.+...+..++.+
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            3445555556677778888888888888877776521    12223344444332 346678888888888888877755


Q ss_pred             ccccchHHHHHH
Q 007842          276 PTRMDLVPAYVR  287 (587)
Q Consensus       276 ~~~~~l~~~l~~  287 (587)
                      .....+...+..
T Consensus       121 ~~~~~i~~~y~~  132 (145)
T d1dvpa1         121 DKYQAIKDTMTI  132 (145)
T ss_dssp             SSCCHHHHHHHH
T ss_pred             ccchHHHHHHHH
Confidence            433334444433

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.52  E-value=11  Score=32.23  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             CchHHHH-HHHHHHHHHHHHhChHH------HhhhhHHHHHhhccC---CchhHHHHHHHHHHHhhcccChH------HH
Q 007842          448 KVYSIRD-AAANNLKRLAEEFGPEW------AMQHITPQVLEMINN---PHYLYRMTILRAISLLAPVMGSE------IT  511 (587)
Q Consensus       448 ~~~~vr~-~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d---~~~~~R~~a~~~l~~l~~~~~~~------~~  511 (587)
                      ..+..|. ..+.+++.++..++...      +.+.++..-.+|+++   ..+..|......+..+...+-+.      ..
T Consensus        85 ~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~q  164 (321)
T d1w9ca_          85 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ  164 (321)
T ss_dssp             SCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHH
T ss_pred             CchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHH
Confidence            3455553 34566666666655432      223344444555554   46899999999999988654332      12


Q ss_pred             HhhHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhch------HHHHhhHHHHHHH---hcCCCCcc
Q 007842          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SMVEKTIRPCLVE---LTEDPDVD  568 (587)
Q Consensus       512 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~------~~~~~~i~~~l~~---l~~d~d~~  568 (587)
                      .+.++..+.-.++++..+|...++.++..+......      ..+.....+.+..   .+.|++..
T Consensus       165 f~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk  230 (321)
T d1w9ca_         165 FKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHT  230 (321)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhHH
Confidence            456777777788999999999999999888765432      2334444555544   45666554