Citrus Sinensis ID: 007853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
MSLVSSPEPSATSYRKTKLYTLKGSGHSSALSTQAFGSDKHKMMCQTDSYSSENYEDYILDSPTEELIHPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHGYQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNMEVEGEWPEPVQNVPFHDSPKESSSSDSILSSISSNKEVSQLSPRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEccEEEEEEcccEEEEEEEcc
cccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHccccccccccHHHHccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccccEEEcHHHccHccccHHHcccccccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEccccEEEEcccccEEEEEEccc
mslvsspepsatsyrktklytlkgsghssalstqafgsdkhkmmcqtdsyssenyedyildspteelihpsssadsgnsfqrqgapshqlragssfpmaaqspldssfmsmrrchgyqpsfesgylenqcpdpvdydedTMRLKLQELERALlddtvgdedddMFATIQNMevegewpepvqnvpfhdspkessssdsiLSSIssnkevsqlspRTLKQLLIDCAATLSDGNIEEATTIINELRQMvsiqgdppQRIAAYMVEGLAARMAASGKFLYKAlkckeppssdRLAAMQILFEvcpcfkfgfMAANGAIIEAFkgekrvhiidfdinqgsQYITLIQTIAslpgnrphlrltgvddpesVQRLVGGLQIIGLRLESLAEalgvpfefhavpsktslvtpsmlecrpgeaLVVNFAFqlhhmpdesvstvNQRDQLLRMVKSLNPKLVTVVEQdmntntspffprFIEAYNYYSVVFESldatlpresqdRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMtmagftscpmsadVTDMIRKLIKQYCDRYKLKEELgllhfgwedKSLIVASAWK
mslvsspepsatsyrktklytlkgsghssALSTqafgsdkhkMMCQTDSYSSENYEDYILDSPTEELIHPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHGYQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNMEVEGEWPEPVQNVPFHDSPKESSSSDSILSSISsnkevsqlspRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRltgvddpesVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNiiacegeerIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEElgllhfgwedkSLIVASAWK
MSLVSSPEPSATSYRKTKLYTLKGSGHSSALSTQAFGSDKHKMMCQTDSYSSENYEDYILDSPTEELIHPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHGYQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLddtvgdedddMFATIQNMEVEGEWPEPVQNVPFHdspkessssdsilssissnkevsQLSPRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
*******************************************************************************************************************************************************LL***************************************************************LKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKE****DRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPD**VSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATL*******MNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVAS***
******************************************************************************************************************************************************************D********************************************************LLIDCAATLSDGNIEEATTIINELRQMVS***DPPQRIAAYMVEGLAARMAASGKF************SDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
************SYRKTKLYTLKGSGHSSALSTQAFGSDKHKMMCQTDSYSSENYEDYILDSPTEELIH************************SSFPMAAQSPLDSSFMSMRRCHGYQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNMEVEGEWPEPVQNVPF***************************PRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
************SYRKTK*Y*LK*****************HKMMC*T*SYSS***********TEE************SF*R*****************************************************************************EDDDMFATIQNMEV*******************************SNKEVSQLSPRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
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MSLVSSPEPSATSYRKTKLYTLKGSGHSSALSTQAFGSDKHKMMCQTDSYSSENYEDYILDSPTEELIHPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHGYQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNMEVEGEWPEPVQNVPFHDSPKESSSSDSILSSISSNKEVSQLSPRTLKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query587 2.2.26 [Sep-21-2011]
Q9SDQ3593 Scarecrow-like protein 1 yes no 0.967 0.957 0.658 0.0
Q9LDL7490 Scarecrow-like transcript no no 0.744 0.891 0.514 1e-127
Q8GVE1544 Chitin-inducible gibberel no no 0.879 0.948 0.448 1e-124
Q69VG1571 Chitin-inducible gibberel no no 0.630 0.647 0.540 1e-119
Q8H125597 Scarecrow-like protein 5 no no 0.649 0.638 0.503 1e-115
Q9S7H5413 Scarecrow-like protein 21 no no 0.633 0.900 0.527 1e-115
Q9M0M5529 Scarecrow-like protein 13 no no 0.717 0.795 0.448 1e-110
Q9FYR7640 Scarecrow-like protein 8 no no 0.611 0.560 0.375 2e-66
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.626 0.672 0.360 3e-59
Q9XE58769 Scarecrow-like protein 14 no no 0.657 0.501 0.324 8e-59
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/597 (65%), Positives = 462/597 (77%), Gaps = 29/597 (4%)

Query: 1   MSLVSSPEPSATSYRKTKLYTLKGSGHSSALST-QAFGSDKHKMMCQTD-SYSSENYEDY 58
           MSLV S EPS  SYR  KLYTL  +G+++ +S+ Q F  D+ K  C TD SY S++YE Y
Sbjct: 16  MSLVRSAEPS--SYRNPKLYTLNENGNNNGVSSAQIFDPDRSKNPCLTDDSYPSQSYEKY 73

Query: 59  ILDSPTEELI-HPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHG- 116
            LDSPT+E + HP  S  S +SF    +  +Q R      M  Q PLDS+  S  R  G 
Sbjct: 74  FLDSPTDEFVQHPIGSGASVSSFGSLDSFPYQSRPVLGCSMEFQLPLDSTSTSSTRLLGD 133

Query: 117 -----YQPSFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNM 171
                Y PS +   +E       ++D++ MR K+QELERALL    GDEDD M      M
Sbjct: 134 YQAVSYSPSMD--VVE-------EFDDEQMRSKIQELERALL----GDEDDKMVGIDNLM 180

Query: 172 EVEGEWPEPVQNVPFHDSPKESSSSDSILSSISSNKEVSQLSPRTLKQLLIDCAATLSDG 231
           E++ EW    ++    DSPKESSS+DS  S +SS + VSQ +P   KQ+LI CA  LS+G
Sbjct: 181 EIDSEWSYQNESEQHQDSPKESSSADSN-SHVSSKEVVSQATP---KQILISCARALSEG 236

Query: 232 NIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL 291
            +EEA +++NELRQ+VSIQGDP QRIAAYMVEGLAARMAASGKF+Y+ALKCKEPPS +RL
Sbjct: 237 KLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERL 296

Query: 292 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGN 351
           AAMQ+LFEVCPCFKFGF+AANGAI+EA KGE+ VHIIDFDINQG+QY+TLI++IA LPG 
Sbjct: 297 AAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGK 356

Query: 352 RPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECR 411
           RP LRLTG+DDPESVQR +GGL+IIGLRLE LAE  GV F+F A+PSKTS+V+PS L C+
Sbjct: 357 RPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCK 416

Query: 412 PGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRF 471
           PGE L+VNFAFQLHHMPDESV+TVNQRD+LL MVKSLNPKLVTVVEQD+NTNTSPFFPRF
Sbjct: 417 PGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRF 476

Query: 472 IEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRA 531
           IEAY YYS VFESLD TLPRESQ+RMNVERQCLARDIVNI+ACEGEERIERYE AGKWRA
Sbjct: 477 IEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRA 536

Query: 532 RMTMAGFTSCPMSADVTDMIRKLIK-QYCDRYKLKEELGLLHFGWEDKSLIVASAWK 587
           RM MAGF   PMSA VT+ I+ LIK QYC++YKLKEE+G LHF WE+KSLIVASAW+
Sbjct: 537 RMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description
>sp|Q9FYR7|SCL8_ARATH Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
224066759585 GRAS family transcription factor [Populu 0.994 0.998 0.75 0.0
224082386584 GRAS family transcription factor [Populu 0.994 1.0 0.735 0.0
255558448559 Chitin-inducible gibberellin-responsive 0.950 0.998 0.746 0.0
302399037579 SCL domain class transcription factor [M 0.984 0.998 0.731 0.0
356546860591 PREDICTED: scarecrow-like protein 1-like 0.996 0.989 0.691 0.0
225457813565 PREDICTED: scarecrow-like protein 1 [Vit 0.960 0.998 0.681 0.0
356515965600 PREDICTED: scarecrow-like protein 1-like 0.996 0.975 0.686 0.0
356552759591 PREDICTED: scarecrow-like protein 1-like 0.996 0.989 0.681 0.0
356509340596 PREDICTED: scarecrow-like protein 1-like 0.996 0.981 0.684 0.0
312281583595 unnamed protein product [Thellungiella h 0.974 0.961 0.658 0.0
>gi|224066759|ref|XP_002302201.1| GRAS family transcription factor [Populus trichocarpa] gi|222843927|gb|EEE81474.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/588 (75%), Positives = 495/588 (84%), Gaps = 4/588 (0%)

Query: 1   MSLVSSPEPSATSYRKTKLYTLKGSGHSSALSTQAFGSDKHKMMCQTDSYSSENYEDYIL 60
           MSLV   E SAT Y   KLY+LKGS  +S LS Q F  DK + M  TDSYSSE+YE Y L
Sbjct: 1   MSLVGPAELSATPYGNHKLYSLKGSNDNSGLSAQIFCPDKRQNMYMTDSYSSESYEKYFL 60

Query: 61  DSPTEELIHPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQS-PLDSSFMSMRRCHGYQP 119
           DSPTEELI PSSS  SGNS   QG  S+QLR      M+ Q  P D+ F     C GYQ 
Sbjct: 61  DSPTEELIQPSSSGISGNSAPPQGTSSYQLRKNLGPSMSPQDDPYDACFTLTTPCDGYQF 120

Query: 120 SFESGYLENQCPDPVDYDEDTMRLKLQELERALLDDTVGDEDDDMFATIQNMEVEGEWPE 179
           + ES YL+ + PDP++YDE  M+LK QELERALL+D   +++D MF   Q+ME++GEW +
Sbjct: 121 NSESDYLDIESPDPLNYDEYKMKLKFQELERALLND---NDEDGMFGNSQSMEMDGEWSD 177

Query: 180 PVQNVPFHDSPKESSSSDSILSSISSNKEVSQLSPRTLKQLLIDCAATLSDGNIEEATTI 239
           P+QN   HDSPKESSSSDS LSSISSNKEVSQLSPRT ++LL +CA  +S+GNIE+A+T+
Sbjct: 178 PIQNGMLHDSPKESSSSDSSLSSISSNKEVSQLSPRTPRRLLFECANAISEGNIEKASTL 237

Query: 240 INELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFE 299
           INELRQ+VSIQGDPPQRIAAYMVEGLAARMA SGK+LYKALKCKEPPSSDRLAAMQILFE
Sbjct: 238 INELRQLVSIQGDPPQRIAAYMVEGLAARMAESGKYLYKALKCKEPPSSDRLAAMQILFE 297

Query: 300 VCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTG 359
           +CPCFKFGFMAANGA+IEAFKGE+RVHIIDFDINQGSQYITLIQT+A+  G  PHLRLTG
Sbjct: 298 ICPCFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANHQGKLPHLRLTG 357

Query: 360 VDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVN 419
           VDDPESVQR VGGL+IIG RLE LAEA  V FEFHAV SKTSLV PSML C+PGEAL+VN
Sbjct: 358 VDDPESVQRPVGGLRIIGQRLEKLAEAYKVSFEFHAVASKTSLVNPSMLNCKPGEALIVN 417

Query: 420 FAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYS 479
           FAFQLHHMPDESVSTVN+RDQLLRM KSLNPKLVTVVEQD+NTNT+PFFPRF EAYNYYS
Sbjct: 418 FAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYS 477

Query: 480 VVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFT 539
            VF+SLDATLPRESQDR+NVE+QCLARDIVNI+ACEGEERIERYE+AGKWRARM MAGFT
Sbjct: 478 AVFDSLDATLPRESQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFT 537

Query: 540 SCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFGWEDKSLIVASAWK 587
           SC ++ +V DMIRKLIK+YCDRY LK+E+G LHFGWEDKSLIVASAWK
Sbjct: 538 SCSITPNVVDMIRKLIKEYCDRYMLKQEVGALHFGWEDKSLIVASAWK 585

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224082386|ref|XP_002306674.1| GRAS family transcription factor [Populus trichocarpa] gi|222856123|gb|EEE93670.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558448|ref|XP_002520249.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223540468|gb|EEF42035.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302399037|gb|ADL36813.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356546860|ref|XP_003541840.1| PREDICTED: scarecrow-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225457813|ref|XP_002266415.1| PREDICTED: scarecrow-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515965|ref|XP_003526667.1| PREDICTED: scarecrow-like protein 1-like isoform 1 [Glycine max] gi|356515967|ref|XP_003526668.1| PREDICTED: scarecrow-like protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356552759|ref|XP_003544730.1| PREDICTED: scarecrow-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356509340|ref|XP_003523408.1| PREDICTED: scarecrow-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|312281583|dbj|BAJ33657.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.972 0.962 0.632 1.7e-185
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.640 0.767 0.564 1.3e-114
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.628 0.893 0.534 1.8e-103
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.640 0.629 0.510 4.7e-103
TAIR|locus:2184625640 SCL8 "AT5G52510" [Arabidopsis 0.918 0.842 0.313 8.8e-63
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.628 0.479 0.335 1.1e-56
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.345 0.421 0.367 1.5e-56
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.614 0.659 0.361 3.3e-56
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.604 0.543 0.373 5.5e-54
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.606 0.680 0.365 1.9e-53
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1799 (638.3 bits), Expect = 1.7e-185, P = 1.7e-185
 Identities = 376/594 (63%), Positives = 441/594 (74%)

Query:     1 MSLVSSPEPSATSYRKTKLYTLKGSGHSSALST-QAFGSDKHKMMCQTD-SYSSENYEDY 58
             MSLV S EPS  SYR  KLYTL  +G+++ +S+ Q F  D+ K  C TD SY S++YE Y
Sbjct:    16 MSLVRSAEPS--SYRNPKLYTLNENGNNNGVSSAQIFDPDRSKNPCLTDDSYPSQSYEKY 73

Query:    59 ILDSPTEELI-HPSSSADSGNSFQRQGAPSHQLRAGSSFPMAAQSPLDSSFMSMRRCHG- 116
              LDSPT+E + HP  S  S +SF    +  +Q R      M  Q PLDS+  S  R  G 
Sbjct:    74 FLDSPTDEFVQHPIGSGASVSSFGSLDSFPYQSRPVLGCSMEFQLPLDSTSTSSTRLLGD 133

Query:   117 YQPSFESGYLENQCPDPVD-YDEDTMRLKLQELERALLXXXXXXXXXXMFATIQN-MEVE 174
             YQ    S  +     D V+ +D++ MR K+QELERALL              I N ME++
Sbjct:   134 YQAVSYSPSM-----DVVEEFDDEQMRSKIQELERALLGDEDDK-----MVGIDNLMEID 183

Query:   175 GEWPEPVQNVPFHXXXXXXXXXXXXXXXXXXXXXXXQLSPRTLKQLLIDCAATLSDGNIE 234
              EW    ++   H                       Q +P   KQ+LI CA  LS+G +E
Sbjct:   184 SEWSYQNESEQ-HQDSPKESSSADSNSHVSSKEVVSQATP---KQILISCARALSEGKLE 239

Query:   235 EATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAM 294
             EA +++NELRQ+VSIQGDP QRIAAYMVEGLAARMAASGKF+Y+ALKCKEPPS +RLAAM
Sbjct:   240 EALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAM 299

Query:   295 QILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPH 354
             Q+LFEVCPCFKFGF+AANGAI+EA KGE+ VHIIDFDINQG+QY+TLI++IA LPG RP 
Sbjct:   300 QVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPR 359

Query:   355 LRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGE 414
             LRLTG+DDPESVQR +GGL+IIGLRLE LAE  GV F+F A+PSKTS+V+PS L C+PGE
Sbjct:   360 LRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGE 419

Query:   415 ALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEA 474
              L+VNFAFQLHHMPDESV+TVNQRD+LL MVKSLNPKLVTVVEQD+NTNTSPFFPRFIEA
Sbjct:   420 TLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEA 479

Query:   475 YNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMT 534
             Y YYS VFESLD TLPRESQ+RMNVERQCLARDIVNI+ACEGEERIERYE AGKWRARM 
Sbjct:   480 YEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMM 539

Query:   535 MAGFTSCPMSADVTDMIRKLIKQ-YCDRYKLKEELGLLHFGWEDKSLIVASAWK 587
             MAGF   PMSA VT+ I+ LIKQ YC++YKLKEE+G LHF WE+KSLIVASAW+
Sbjct:   540 MAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184625 SCL8 "AT5G52510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SDQ3SCL1_ARATHNo assigned EC number0.65820.96760.9578yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-175
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  500 bits (1289), Expect = e-175
 Identities = 183/376 (48%), Positives = 247/376 (65%), Gaps = 9/376 (2%)

Query: 217 LKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFL 276
           L  LL+ CA  +S G++  A  I+  L Q+ S  GDP QR+AAY  E LAAR+A SG  +
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 277 YKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDIN 333
           Y AL         S + LAA ++ +EV P  KFG   AN AI+EAF+GE+RVHIIDFDI 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 334 QGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF 393
           QG Q+ +LIQ +AS PG  PHLR+TG+  P+        L+  G RL   A++LGVPFEF
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAE--ELEETGDRLAQFADSLGVPFEF 178

Query: 394 HAVPSKT-SLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKL 452
           + + +K    +   ML+ RPGEAL VN  F LH + DESVS  +     LR+VKSLNPK+
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPT--FLRLVKSLNPKV 236

Query: 453 VTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNII 512
           VT+VEQ+ N N++PF  RF+EA +YYS +F+SL+ATLPR+S++R  VER+ L R+IVN++
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 513 ACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDR-YKLKEELGLL 571
           ACEG ER+ER+E  GKWR RM  AGF   P+S       + L++ Y    Y+++E+ G L
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 572 HFGWEDKSLIVASAWK 587
             GW+ + L+ ASAW+
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 587
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.22
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.2
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.03
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.21
PLN02233261 ubiquinone biosynthesis methyltransferase 93.37
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 92.96
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.36
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 90.89
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.39
PRK08317241 hypothetical protein; Provisional 90.35
PRK06202232 hypothetical protein; Provisional 90.32
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 89.74
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 88.84
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 88.76
PRK11207197 tellurite resistance protein TehB; Provisional 88.19
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 88.17
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 88.13
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 86.52
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 86.09
PRK12335287 tellurite resistance protein TehB; Provisional 85.52
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 85.41
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 85.29
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 84.25
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 83.9
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 83.52
TIGR03438301 probable methyltransferase. This model represents 83.43
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 83.17
PLN02244340 tocopherol O-methyltransferase 83.09
PLN02336 475 phosphoethanolamine N-methyltransferase 82.8
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-113  Score=910.29  Aligned_cols=369  Identities=49%  Similarity=0.828  Sum_probs=355.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHhhccCcccccccccCCCC---chhHHHH
Q 007853          217 LKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAA  293 (587)
Q Consensus       217 l~~LLl~CA~AV~~gd~~~A~~lL~~L~~~aS~~Gd~~QRLA~yFaeAL~aRl~~sg~~~y~~l~~~~~~---~~~~l~A  293 (587)
                      |+|||++||+||+.||.+.|+.+|++|++++||.|||+||||+||++||.+||.++++++|+++....++   ..+.+.|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999887655443   5678899


Q ss_pred             HHHHHHhCCcchhhhHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHH
Q 007853          294 MQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGL  373 (587)
Q Consensus       294 ~q~f~e~sP~~kfa~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L  373 (587)
                      |+.||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.+.  +...+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765  45689


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEe-eCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcE
Q 007853          374 QIIGLRLESLAEALGVPFEFHAV-PSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKL  452 (587)
Q Consensus       374 ~etG~rL~~fA~~lgvpFeF~~V-~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkV  452 (587)
                      ++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999995 67899999999999999999999999999999999888899999999999999999


Q ss_pred             EEEEeccCCCCCCCchHHHHHHHhHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhhhccCcchhhhhhhhhhHHHH
Q 007853          453 VTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRAR  532 (587)
Q Consensus       453 VtlvEqEan~Ns~~F~~RF~EAL~yYsAlFDSLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG~eRvER~E~~~~Wr~R  532 (587)
                      ||+||+|+|||+++|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCChHHHHHHHHHHHhcC-CCcEEEEeCCEEEEEECCceeEEEeecC
Q 007853          533 MTMAGFTSCPMSADVTDMIRKLIKQYC-DRYKLKEELGLLHFGWEDKSLIVASAWK  587 (587)
Q Consensus       533 m~~AGF~~vplS~~~~~qak~LL~~y~-~gf~v~e~~g~L~LgWkgr~L~~aSAWr  587 (587)
                      |.+|||+++|+|+.++.|||.||+.|. +||+|++++|||+|||||+||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999875 8999999999999999999999999998

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.9 bits (183), Expect = 4e-14
 Identities = 73/521 (14%), Positives = 152/521 (29%), Gaps = 132/521 (25%)

Query: 134 VDYDEDTMRLKLQELERALLDDTVGDED-----DDMFATIQNMEVEG--EWPEPVQNV-- 184
           +D++    + + +++     D  V + D     D   + +   E++      + V     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 185 ---PFHDSPKESSSS----------DSILSSISSNKEVSQLSPRTLKQLLIDCAATLSDG 231
                    +E                ++S I    E  Q S  T  ++ I+    L + 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMMT--RMYIEQRDRLYND 122

Query: 232 N----------IEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALK 281
           N          ++    +   L ++      P + +    ++G    +  SGK       
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLEL-----RPAKNVL---IDG----VLGSGKTWVALDV 170

Query: 282 CKEPPSSDRLAAMQILFEVCPCF--KFGFMAANGAIIEAFKGEKRVHIIDFDINQ-GSQY 338
           C    S      M   F++   F        +   ++E    +K ++ ID +        
Sbjct: 171 CL---SYKVQCKMD--FKI---FWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHS 220

Query: 339 ITLIQTIASLPG-------NRPHLR----LTGVDDPESVQRLVGGLQIIGL-RLESLAEA 386
             +   I S+         ++P+      L  V + ++        +I+   R + + + 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 387 LGVPFEFH--AVPSKTSLVTP-------SMLECR----PGEALVVN------FAFQLHHM 427
           L      H        +L            L+CR    P E L  N       A  +   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 428 PDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYS--VVFESL 485
                          + V     KL T++E  +N    P      E    +    VF   
Sbjct: 341 LA--------TWDNWKHVN--CDKLTTIIESSLN-VLEP-----AEYRKMFDRLSVFPP- 383

Query: 486 DATLPRESQDRM--NVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMA----GFT 539
            A +P      +  +V +      +VN        ++ +Y L  K     T++       
Sbjct: 384 SAHIPTILLSLIWFDVIKSD-VMVVVN--------KLHKYSLVEKQPKESTISIPSIYLE 434

Query: 540 SCPMSADVTDMIRKLIKQYCDRYKLKEELGLLHFG--WEDK 578
                 +   + R ++    D Y + +          + D+
Sbjct: 435 LKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQ 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.35
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.17
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.12
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.97
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.88
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.51
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.2
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 94.76
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.63
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.58
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.51
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.23
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.94
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.89
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 93.83
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 93.62
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.56
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.46
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.26
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 92.34
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 92.21
3f4k_A257 Putative methyltransferase; structural genomics, P 92.13
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 91.89
3gu3_A284 Methyltransferase; alpha-beta protein, structural 91.88
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 91.86
3m70_A286 Tellurite resistance protein TEHB homolog; structu 91.77
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 91.53
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 91.44
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 91.43
3hnr_A220 Probable methyltransferase BT9727_4108; structural 90.99
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 90.81
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 90.67
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 90.13
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.12
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 89.96
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 89.76
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 89.25
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 88.79
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 88.76
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 88.23
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 88.15
3ege_A261 Putative methyltransferase from antibiotic biosyn 87.38
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 86.91
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 86.56
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 86.23
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 86.04
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 85.97
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 85.62
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 85.45
3ocj_A305 Putative exported protein; structural genomics, PS 84.92
3lcc_A235 Putative methyl chloride transferase; halide methy 84.52
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 84.44
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 84.14
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 83.9
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 83.27
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 83.07
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 82.85
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 82.3
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 82.25
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 81.95
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 81.71
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 81.56
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 81.54
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 80.93
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 80.75
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 80.54
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.35  E-value=0.0015  Score=65.22  Aligned_cols=107  Identities=14%  Similarity=0.268  Sum_probs=63.1

Q ss_pred             eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCC
Q 007853          324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLV  403 (587)
Q Consensus       324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l  403 (587)
                      .-+|+|+|.|.|.    +...|+.+- ++|..+||||+....      .|+...+++    +..+..-....+..+..++
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~------ml~~A~~~~----~~~~~~~~v~~~~~D~~~~  135 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPA------MIERCRRHI----DAYKAPTPVDVIEGDIRDI  135 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHH------HHHHHHHHH----HTSCCSSCEEEEESCTTTC
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHH------HHHHHHHHH----HhhccCceEEEeecccccc
Confidence            4579999999984    445566553 346789999997532      344444443    3344433333344444443


Q ss_pred             CCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEE-EEEec
Q 007853          404 TPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLV-TVVEQ  458 (587)
Q Consensus       404 ~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVV-tlvEq  458 (587)
                      ..+     +-.+  |-+.+.|||+++      ..|..+|+.| |.|+|.-+ ++.|.
T Consensus       136 ~~~-----~~d~--v~~~~~l~~~~~------~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          136 AIE-----NASM--VVLNFTLQFLEP------SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             CCC-----SEEE--EEEESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-----cccc--ceeeeeeeecCc------hhHhHHHHHHHHHcCCCcEEEEEec
Confidence            322     2223  334567899975      2466788877 66999854 45554
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.12
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.92
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.62
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.37
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.82
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.81
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.74
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.62
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 94.54
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 93.91
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 93.8
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.28
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.35
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 91.53
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 91.16
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 91.0
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 89.96
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 88.85
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 87.28
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 85.65
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 82.58
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 81.65
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.011  Score=54.33  Aligned_cols=106  Identities=21%  Similarity=0.333  Sum_probs=65.1

Q ss_pred             CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007853          323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL  402 (587)
Q Consensus       323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~  402 (587)
                      +.-||+|+|.|.|.    +...|+... ..|..+|||||.+..      .|+...+++    +..+....++.+..+..+
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~~------ml~~A~~~~----~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQP------MVERCRQHI----AAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCHH------HHHHHHHHH----HTSCCSSCEEEECSCTTT
T ss_pred             CCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCHH------HHHHHHHHh----Hhhcccchhhhccchhhc
Confidence            44589999999984    334444432 246789999997542      344444443    344555555555443332


Q ss_pred             CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 007853          403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVV  456 (587)
Q Consensus       403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlv  456 (587)
                      +       ..+..-+|.|.+.|||++.+      .+..+|+.| |.|+|.-..++
T Consensus       104 ~-------~~~~~d~i~~~~~l~~~~~~------d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         104 V-------EIKNASMVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             C-------CCCSEEEEEEESCGGGSCGG------GHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-------ccccceeeEEeeeccccChh------hHHHHHHHHHHhCCCCceeec
Confidence            2       22345567777889998652      245677777 67999975544
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure