Citrus Sinensis ID: 007861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
MESKANQTKTNMATNVDQSPIATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKGGVEEVPNPSVQQSKLDIQML
cccccccccccccccccccccHHHHcHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccEEEcccEEEccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccHHccccccEEEEEEEEHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccc
ccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHcccEEEEHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHcccccccEEEEEc
meskanqtktnmatnvdqspiatNIFFTKYLQSLTQTPHRLRKRMLatwtpdqelnrVRLRSGADMKRKLMWYDLVALGVGGMLGVGVFVTTgpvalqisgpsVFISYIIAGISALLSSLcytefsvqipvaGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHavgendpnswrvEVDGlfkgynmldfPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFcngsvqnlvkpgglapfgvkgivDGAATVYFSYIGYDSVSTLAEEiqnpskslplgiVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRarlvptwlakvhpstgtplnaTLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVmisnnppshTLLFLFLLSFCAICFSLSLKIQQQlwglplfgGLMLIVTAFFHYSmsrvshptgwsvpfmpwpAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHstyeaeemkggveevpnpsvqqskLDIQML
meskanqtktnmatnvdqspiaTNIFFTKYLQSLTQTPHRLRKRMlatwtpdqelnrvrlrsgadmkRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAvgendpnswRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMkggveevpnpsvqqskldiqml
MESKANQTKTNMATNVDQSPIATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDlvalgvggmlgvgvfvTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPavalvllltlclcHGTKESSILNLIMTifhvvffgfiiiagfCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVsllyslmalslclMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTllflfllsfcaicfslslKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKGGVEEVPNPSVQQSKLDIQML
********************IATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYE**************************
****************************KYLQSLTQTPHRLRKRML***********************LMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVH************************LDIQML
***********MATNVDQSPIATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKGGVEEVPNPSVQQSKLDIQML
************ATNVDQSPIATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNR*R*RSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKG*VEEV**PSVQQSKLDIQML
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MESKANQTKTNMATNVDQSPIATNIFFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKGGVEEVPNPSVQQSKLDIQML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query587 2.2.26 [Sep-21-2011]
Q9LZ20583 Cationic amino acid trans yes no 0.904 0.910 0.521 1e-156
Q9SQZ0584 Cationic amino acid trans no no 0.904 0.909 0.506 1e-148
Q84MA5594 Cationic amino acid trans no no 0.906 0.895 0.411 1e-122
O64759569 Cationic amino acid trans no no 0.904 0.933 0.377 1e-105
Q9SHH0590 Cationic amino acid trans no no 0.906 0.901 0.402 1e-104
Q8GYB4609 Cationic amino acid trans no no 0.829 0.799 0.310 2e-62
Q8W4K3600 Cationic amino acid trans no no 0.664 0.65 0.351 7e-62
Q8WY07619 Cationic amino acid trans yes no 0.868 0.823 0.309 1e-59
P30825629 High affinity cationic am no no 0.882 0.823 0.290 1e-59
A8I499657 Low affinity cationic ami no no 0.860 0.768 0.296 5e-59
>sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 Back     alignment and function desciption
 Score =  551 bits (1420), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/547 (52%), Positives = 385/547 (70%), Gaps = 16/547 (2%)

Query: 30  YLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLGVGVF 89
           YL SL+ TP RL +R ++  T   E++RVR  SG  M+R L WYDL+ LG+GGM+G GVF
Sbjct: 21  YLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGMVGAGVF 80

Query: 90  VTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149
           VTTG  +   +GPS+ +SY IAG+ ALLS+ CYTEF+V +PVAGGAFSY+R+TFGEF  +
Sbjct: 81  VTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITFGEFPAF 140

Query: 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVL 209
           F GAN++M+YV+SNAAV+RSFT YL  A G +  + WR  V GL KG+N +D  AV +VL
Sbjct: 141 FTGANLVMDYVMSNAAVSRSFTAYLGTAFGIST-SKWRFVVSGLPKGFNEIDPVAVLVVL 199

Query: 210 LLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPG------GLAPFG 263
           ++T+ +C  T+ESS +N+IMT FH+ F  F+I+ GF  G  +NL  P       G  PFG
Sbjct: 200 VITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSGFFPFG 259

Query: 264 VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLM 323
             G+ +GAA VY SYIGYD+VST+AEE++NP K +P+G+ GSV IV++LY LMA+S+ ++
Sbjct: 260 AAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAVSMSML 319

Query: 324 VPYNKILKDASFSMAFR-NIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARL 382
           +PY+ I  +A FS AFR + GW W + VVG GAS GI+ SLLVAMLGQARY+CVIGR+R+
Sbjct: 320 LPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCVIGRSRV 379

Query: 383 VPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYR 442
           VP W AK+HP T TP+NA+ FLG+ TA++ALFT+LN++L ++SI TL VFY+VANALI+R
Sbjct: 380 VPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVANALIFR 439

Query: 443 RYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLP---LFGGLMLIVTAF---F 496
           RYV +    P  TL FL L S  ++ F+L  K+  +  G P   + G   ++  A    F
Sbjct: 440 RYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPE--GKPKAFMLGASAVVAIAIVLSF 497

Query: 497 HYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGV 556
              + +   P  W VPFMPW   +SIFLN+FL+ +L   SY RF  ++ LI L Y+ YGV
Sbjct: 498 QCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYLFYGV 557

Query: 557 HSTYEAE 563
           H++ +AE
Sbjct: 558 HASSDAE 564
Permease involved in the transport of the cationic neutral or acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 Back     alignment and function description
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 Back     alignment and function description
>sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 Back     alignment and function description
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|Q8WY07|CTR3_HUMAN Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
255580821584 cationic amino acid transporter, putativ 0.957 0.962 0.806 0.0
224137956534 cationic amino acid transporter [Populus 0.908 0.998 0.824 0.0
356513779575 PREDICTED: high affinity cationic amino 0.945 0.965 0.774 0.0
356563401573 PREDICTED: high affinity cationic amino 0.931 0.954 0.778 0.0
147866928591 hypothetical protein VITISV_010305 [Viti 0.952 0.945 0.740 0.0
449461309570 PREDICTED: cationic amino acid transport 0.960 0.989 0.763 0.0
449505273586 PREDICTED: cationic amino acid transport 0.957 0.959 0.741 0.0
224126613500 cationic amino acid transporter [Populus 0.850 0.998 0.815 0.0
38345948561 OSJNBb0103I08.20 [Oryza sativa Japonica 0.936 0.980 0.665 0.0
413919108566 hypothetical protein ZEAMMB73_148244 [Ze 0.936 0.971 0.658 0.0
>gi|255580821|ref|XP_002531231.1| cationic amino acid transporter, putative [Ricinus communis] gi|223529191|gb|EEF31167.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/564 (80%), Positives = 515/564 (91%), Gaps = 2/564 (0%)

Query: 26  FFTKYLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGMLG 85
           FF+ YL SL+QTP+RL+KRMLATWTP QELN+VRLRSGADMKRKL W+DL+ALG+GGMLG
Sbjct: 21  FFSDYLHSLSQTPYRLKKRMLATWTPAQELNQVRLRSGADMKRKLKWHDLIALGIGGMLG 80

Query: 86  VGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145
           VGVFVTTG VAL+ +GP+VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE
Sbjct: 81  VGVFVTTGSVALEDTGPAVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 140

Query: 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAV 205
           F+GYFAGANILMEYVLSNAAVAR+FTDYLC  VGEN+ NSWRVEV+GL +GYN LDF AV
Sbjct: 141 FIGYFAGANILMEYVLSNAAVARTFTDYLCRTVGENNSNSWRVEVNGLVEGYNKLDFTAV 200

Query: 206 ALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVK 265
           ALVLLLTLCLCH TKESS LNL+MT+FHV+FF FIIIAG   GSV+NLV+PGG+AP+GVK
Sbjct: 201 ALVLLLTLCLCHSTKESSTLNLVMTVFHVIFFAFIIIAGIYKGSVKNLVEPGGIAPYGVK 260

Query: 266 GIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVP 325
           GI++GAA VYFSYIGYDSVST+AEEIQNPSKSLP+GI+GSVLIV LLY LMALSLC+M+P
Sbjct: 261 GIINGAAIVYFSYIGYDSVSTMAEEIQNPSKSLPIGILGSVLIVCLLYCLMALSLCVMMP 320

Query: 326 YNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT 385
           YN I K+A+FSM F+ IGW WASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVP+
Sbjct: 321 YNMIPKEAAFSMVFQKIGWNWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPS 380

Query: 386 WLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYV 445
           WLAKV+PSTGTPLNATLFLGLCTASIALFTEL IVLEMISISTLLVFYLVANALIYRRYV
Sbjct: 381 WLAKVNPSTGTPLNATLFLGLCTASIALFTELPIVLEMISISTLLVFYLVANALIYRRYV 440

Query: 446 MISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSH 505
           +IS NPPSHTLLFLFLLSF AI FS+S K+++Q WGLPLFG + + +TAFF Y +  +S 
Sbjct: 441 IISKNPPSHTLLFLFLLSFTAIGFSISWKLEEQKWGLPLFGLITVAITAFFQYMVPSISQ 500

Query: 506 PT-GWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEE 564
           P   WSVP MPWPAA+SIFLNVFL TTLKLL++QRFA+W CLIT+FYVLYGVHSTY+AE+
Sbjct: 501 PNEEWSVPLMPWPAALSIFLNVFLTTTLKLLAFQRFAVWACLITIFYVLYGVHSTYQAED 560

Query: 565 MKGGVEEV-PNPSVQQSKLDIQML 587
           M+ GV+++  +PS+QQSKLDIQ++
Sbjct: 561 MELGVDQMQQHPSIQQSKLDIQVI 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224137956|ref|XP_002326482.1| cationic amino acid transporter [Populus trichocarpa] gi|222833804|gb|EEE72281.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513779|ref|XP_003525587.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356563401|ref|XP_003549952.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|147866928|emb|CAN83060.1| hypothetical protein VITISV_010305 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461309|ref|XP_004148384.1| PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449505273|ref|XP_004162422.1| PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224126613|ref|XP_002329598.1| cationic amino acid transporter [Populus trichocarpa] gi|222870307|gb|EEF07438.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38345948|emb|CAE04272.2| OSJNBb0103I08.20 [Oryza sativa Japonica Group] gi|38345950|emb|CAE04339.2| OSJNBb0038F03.3 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413919108|gb|AFW59040.1| hypothetical protein ZEAMMB73_148244 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
TAIR|locus:2175488583 CAT6 "AT5G04770" [Arabidopsis 0.904 0.910 0.453 3.2e-120
TAIR|locus:2075745584 CAT7 "cationic amino acid tran 0.904 0.909 0.438 5.4e-118
TAIR|locus:2127398594 AAT1 "AT4G21120" [Arabidopsis 0.899 0.888 0.360 6.1e-94
TAIR|locus:2020387590 CAT8 "cationic amino acid tran 0.897 0.893 0.354 1.4e-85
TAIR|locus:2044682569 CAT5 "AT2G34960" [Arabidopsis 0.896 0.924 0.332 6.4e-83
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.594 0.455 0.336 6.1e-62
FB|FBgn0037203604 slif "slimfast" [Drosophila me 0.643 0.625 0.318 6.1e-58
FB|FBgn0036984 669 CG13248 [Drosophila melanogast 0.599 0.526 0.294 1.3e-55
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.606 0.584 0.326 6.9e-55
UNIPROTKB|O43246635 SLC7A4 "Cationic amino acid tr 0.671 0.620 0.290 1.8e-54
TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 248/547 (45%), Positives = 328/547 (59%)

Query:    30 YLQSLTQTPHRLRKRMLATWTPDQELNRVRLRSGADMKRKLMWYDXXXXXXXXXXXXXXX 89
             YL SL+ TP RL +R ++  T   E++RVR  SG  M+R L WYD               
Sbjct:    21 YLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGMVGAGVF 80

Query:    90 XTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149
              TTG  +   +GPS+ +SY IAG+ ALLS+ CYTEF+V +PVAGGAFSY+R+TFGEF  +
Sbjct:    81 VTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITFGEFPAF 140

Query:   150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPXXXXXX 209
             F GAN++M+YV+SNAAV+RSFT YL  A G +  + WR  V GL KG+N +D        
Sbjct:   141 FTGANLVMDYVMSNAAVSRSFTAYLGTAFGIST-SKWRFVVSGLPKGFNEIDPVAVLVVL 199

Query:   210 XXXXXXXHGTKESSILNLIMTXXXXXXXXXXXXXXXCNGSVQNLVKPG------GLAPFG 263
                      T+ESS +N+IMT                 G  +NL  P       G  PFG
Sbjct:   200 VITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSGFFPFG 259

Query:   264 VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVXXXXXXXXXXXXXM 323
               G+ +GAA VY SYIGYD+VST+AEE++NP K +P+G+ GSV IV             +
Sbjct:   260 AAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAVSMSML 319

Query:   324 VPYNKILKDASFSMAFRNI-GWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARL 382
             +PY+ I  +A FS AFR   GW W + VVG GAS GI+ SLLVAMLGQARY+CVIGR+R+
Sbjct:   320 LPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCVIGRSRV 379

Query:   383 VPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYR 442
             VP W AK+HP T TP+NA+ FLG+ TA++ALFT+LN++L ++SI TL VFY+VANALI+R
Sbjct:   380 VPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVANALIFR 439

Query:   443 RYVMISNNPPSHTXXXXXXXXXXXXXXXXXXKIQQQLWGLP---LFGGLMLIVTAF---F 496
             RYV +    P  T                  K+  +  G P   + G   ++  A    F
Sbjct:   440 RYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPE--GKPKAFMLGASAVVAIAIVLSF 497

Query:   497 HYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGV 556
                + +   P  W VPFMPW   +SIFLN+FL+ +L   SY RF  ++ LI L Y+ YGV
Sbjct:   498 QCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYLFYGV 557

Query:   557 HSTYEAE 563
             H++ +AE
Sbjct:   558 HASSDAE 564
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA;ISS;IDA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IGI
GO:0005886 "plasma membrane" evidence=IDA
GO:0009624 "response to nematode" evidence=IEP
TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037203 slif "slimfast" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036984 CG13248 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O43246 SLC7A4 "Cationic amino acid transporter 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LZ20CAAT6_ARATHNo assigned EC number0.52100.90450.9108yesno
Q8WY07CTR3_HUMANNo assigned EC number0.30950.86880.8239yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-130
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-65
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 1e-50
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 1e-34
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 2e-26
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 2e-25
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-23
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 3e-21
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 1e-19
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 2e-18
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 3e-18
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 1e-17
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 2e-15
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 3e-13
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 2e-12
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 6e-11
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 2e-10
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 4e-10
PRK10580457 PRK10580, proY, putative proline-specific permease 1e-09
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 9e-09
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 1e-08
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 1e-08
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 8e-08
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 1e-07
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 1e-06
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 6e-06
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 1e-05
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 2e-05
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 5e-05
PRK15238496 PRK15238, PRK15238, inner membrane transporter Yje 6e-05
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 0.002
pfam03845320 pfam03845, Spore_permease, Spore germination prote 0.003
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  392 bits (1009), Expect = e-130
 Identities = 182/538 (33%), Positives = 290/538 (53%), Gaps = 38/538 (7%)

Query: 61  RSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSL 120
           R  + MKR L  +DL+ALG+G  +G G++V TG VA   SGP++ +S++I+G++A+LS  
Sbjct: 21  REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80

Query: 121 CYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGE 180
           CY EF  ++P AG A+ Y  VT GE   +  G N+++EYV+  AAVARS++ Y    + +
Sbjct: 81  CYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNK 140

Query: 181 NDPNSWRVEVDGLFKGY--NMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFG 238
                +R     L         DF AV L+LLL + L  G KES+ +N I T  +++   
Sbjct: 141 Q-IGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLL 199

Query: 239 FIIIAGFCNGSVQN-----LVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQN 293
           F+IIAGF    V N         GG  P+G  G++ GAAT +F++IG+D+++T  EE++N
Sbjct: 200 FVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259

Query: 294 PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGA 353
           P +++P+GIV S+L+  + Y LM+ +L LM+PY  +  DA F +AF  +GW  A  +V  
Sbjct: 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAV 319

Query: 354 GASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIAL 413
           GA  G+  SLL  M    R +  + R  L+  WLA+++  T TP+NAT+  G   A +A 
Sbjct: 320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAF 379

Query: 414 FTELNIVLEMISISTLLVFYLVANALIYRRY---------------------VMISNNPP 452
             +L  +++++SI TLL + LVA  ++  RY                     V  ++   
Sbjct: 380 LFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSE 439

Query: 453 SHTLLFLFLLSFCAICFSLSL-------KIQQQLWGLPLF--GGLMLIVTAFFHYSMSRV 503
           S +  F     F  +   LS+        I ++ W + L     ++ ++     +   + 
Sbjct: 440 SQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQN 499

Query: 504 SHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYE 561
                + VP +P+  A+SI +N+FLM  L   ++ RFA+W  +  L Y LYG+  + E
Sbjct: 500 KQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 587
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.94
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.94
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.91
PHA02764399 hypothetical protein; Provisional 99.87
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.86
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.86
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.83
PRK10483414 tryptophan permease; Provisional 99.83
PRK09664415 tryptophan permease TnaB; Provisional 99.82
TIGR00814397 stp serine transporter. The HAAAP family includes 99.8
PRK15132403 tyrosine transporter TyrP; Provisional 99.79
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.75
PRK13629443 threonine/serine transporter TdcC; Provisional 99.75
PF03845320 Spore_permease: Spore germination protein; InterPr 99.66
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.35
PLN03074473 auxin influx permease; Provisional 99.34
PTZ00206467 amino acid transporter; Provisional 99.33
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.32
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.24
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.17
PRK11375484 allantoin permease; Provisional 99.12
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.04
COG3949349 Uncharacterized membrane protein [Function unknown 98.98
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.88
COG1457442 CodB Purine-cytosine permease and related proteins 98.88
PRK11017404 codB cytosine permease; Provisional 98.85
PF1390651 AA_permease_C: C-terminus of AA_permease 98.74
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.72
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.69
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.58
TIGR00813407 sss transporter, SSS family. have different number 98.54
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.5
PRK12488549 acetate permease; Provisional 98.43
PRK15419502 proline:sodium symporter PutP; Provisional 98.36
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.31
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.23
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.23
PRK09395551 actP acetate permease; Provisional 98.17
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.14
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.14
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.1
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.1
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.09
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.06
PRK00701439 manganese transport protein MntH; Reviewed 98.05
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.03
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.03
PRK10484523 putative transporter; Provisional 98.01
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.84
PRK15433439 branched-chain amino acid transport system 2 carri 97.76
PLN00151 852 potassium transporter; Provisional 97.73
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.66
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.34
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.29
PLN00150 779 potassium ion transporter family protein; Provisio 97.21
COG4147529 DhlC Predicted symporter [General function predict 97.06
COG1292537 BetT Choline-glycine betaine transporter [Cell env 96.89
PLN00149 779 potassium transporter; Provisional 96.8
PRK09950506 putative transporter; Provisional 96.73
PLN00148 785 potassium transporter; Provisional 96.66
PRK10745622 trkD potassium transport protein Kup; Provisional 96.59
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 96.56
KOG4303524 consensus Vesicular inhibitory amino acid transpor 96.41
PRK09928679 choline transport protein BetT; Provisional 96.16
COG4146571 Predicted symporter [General function prediction o 95.81
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.62
TIGR00842453 bcct choline/carnitine/betaine transport. properti 95.18
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 94.84
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.62
COG3158627 Kup K+ transporter [Inorganic ion transport and me 92.81
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 91.12
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 87.22
PF05297 381 Herpes_LMP1: Herpesvirus latent membrane protein 1 85.34
KOG3660629 consensus Sodium-neurotransmitter symporter [Signa 85.01
KOG1287479 consensus Amino acid transporters [Amino acid tran 84.84
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.43
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 83.0
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=5.8e-64  Score=538.62  Aligned_cols=495  Identities=36%  Similarity=0.654  Sum_probs=413.5

Q ss_pred             CcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861           63 GADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT  142 (587)
Q Consensus        63 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~  142 (587)
                      +++++|+++.+++++++++.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~  102 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT  102 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence            45689999999999999999999999999998875568999999999999999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccc-----cccccccCCcchHHHHHHHHHHHHHHHh
Q 007861          143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVE-----VDGLFKGYNMLDFPAVALVLLLTLCLCH  217 (587)
Q Consensus       143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (587)
                      +|+.+||++||.++++|+...+..+..++.|+..+++. ....+...     .++..   ....+++++++++++.+|.+
T Consensus       103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~-~~~~~~~~~~~~~~~~l~---~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNK-QIGQFRRTYFKLNYDGLA---EYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccccccCCccc---ccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999887752 11111110     01111   12346777788888899999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCcc-----CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861          218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV-----KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ  292 (587)
Q Consensus       218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k  292 (587)
                      |+|..+|++.+++.++++.++++++.++.+.+.+|+.     +.+++.|.++.+++.+...++|+|.|+|.+++++||+|
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k  258 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK  258 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence            9999999999999999999888888888776665654     22356677888899999999999999999999999999


Q ss_pred             CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861          293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQAR  372 (587)
Q Consensus       293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR  372 (587)
                      ||+||+||+++.++++++++|++..++.....|+++++.++|+..+++..+.++...++.+.++.+.+++.++.+++.+|
T Consensus       259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sR  338 (557)
T TIGR00906       259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR  338 (557)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888888999999888888999999999999999999999999999


Q ss_pred             HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CC
Q 007861          373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISN-NP  451 (587)
Q Consensus       373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~  451 (587)
                      ++|+|||||.+|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++.+++|++++.. ++
T Consensus       339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~  418 (557)
T TIGR00906       339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQ  418 (557)
T ss_pred             HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            99999999999999999999999999999999999998888888999999999999999999999999999775211 11


Q ss_pred             C-----------------------chh---HHHHHHHHHHHHHHHHhh-hhcccc--chhhHHHHHHHHHHHHHHhhccC
Q 007861          452 P-----------------------SHT---LLFLFLLSFCAICFSLSL-KIQQQL--WGLPLFGGLMLIVTAFFHYSMSR  502 (587)
Q Consensus       452 ~-----------------------~~~---~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~  502 (587)
                      |                       .+.   ......++.+...+...+ .....+  +.+..+.+++.+....+..++|+
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (557)
T TIGR00906       419 AKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQ  498 (557)
T ss_pred             cccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            1                       000   111111111111122222 111223  33444444444455555566688


Q ss_pred             CCCCCccccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccchh
Q 007861          503 VSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYE  561 (587)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (587)
                      ...+++||+|..|++|.++++.|++++..+...+|+.+.+|+++|++.|+.|++||+++
T Consensus       499 ~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       499 NKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            76788999999999999999999999999999999999999999999999999999663

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 8e-07
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 8e-07
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 22/248 (8%)
Query: 95  VALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGAN 154
           V  +I+G ++  ++I++GI ALL +  YT+   +I    G  +++    G+ +   A + 
Sbjct: 32  VGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSI 91
Query: 155 IL-MEYVLSNAAVARSFTDYLCHAVGENDP-NSWRVEVD--GLFKGYNMLDFPXXXXXXX 210
           +L M YV+S A  A+ F  Y    +  N P N++ + +   G+   +  L+F        
Sbjct: 92  LLWMSYVISIALFAKGFAGYFLPLI--NAPINTFNIAITEIGIVAFFTALNF-------- 141
Query: 211 XXXXXXHGTKESSILNLIMTXXXXXXXXXXXXXXXCNGSVQNLVKPGGLAPFGVKGIVDG 270
                  G+K        +                       ++    LAP  V G++  
Sbjct: 142 ------FGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPD--LAPSAVSGMIFA 193
Query: 271 AATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVXXXXXXXXXXXXXMVPYNKIL 330
           +A  + SY+G+  ++  +E I+NP K++P  I  S+LIV              +P ++++
Sbjct: 194 SAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELI 253
Query: 331 KDASFSMA 338
           K +  ++A
Sbjct: 254 KASENALA 261
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-102
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-69
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 2e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  314 bits (807), Expect = e-102
 Identities = 79/440 (17%), Positives = 165/440 (37%), Gaps = 26/440 (5%)

Query: 67  KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFS 126
            +KL  ++ V++ VG M+G  +F   G V  +I+G ++  ++I++GI ALL +  YT+  
Sbjct: 5   NKKLSLWEAVSMAVGVMIGASIFSIFG-VGAKIAGRNLPETFILSGIYALLVAYSYTKLG 63

Query: 127 VQIPVAGGAFSYLRVTFGE-FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNS 185
            +I    G  +++    G+  +       + M YV+S A  A+ F  Y    +       
Sbjct: 64  AKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTF 123

Query: 186 WRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGF 245
                         +    + +V   T     G+K        + +  ++  G  I AG 
Sbjct: 124 N-------------IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGL 170

Query: 246 CNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGS 305
                  ++    LAP  V G++  +A  + SY+G+  ++  +E I+NP K++P  I  S
Sbjct: 171 ITIHPSYVI--PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228

Query: 306 VLIVSLLYSLMALSLCLMVPYNKIL--KDASFSMAFRNIGWAWASNVVGAGASLGIVASL 363
           +LIV  +Y  +A+S    +P ++++   + + ++A +         ++  GA   I +++
Sbjct: 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM 288

Query: 364 LVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEM 423
              + G A     + +   +P +  +                      AL   +  V  +
Sbjct: 289 NATIYGGANVAYSLAKDGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASI 346

Query: 424 ISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLP 483
            S   ++++  V  +                 ++    +    +   L          + 
Sbjct: 347 TSAVFMVIYLFVILSHYILID----EVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVF 402

Query: 484 LFGGLMLI-VTAFFHYSMSR 502
                  I V  F       
Sbjct: 403 YGIIATFIGVLIFEIIYRKV 422
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.33
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.66
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.49
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.54
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 94.72
4ain_A539 Glycine betaine transporter BETP; membrane protein 94.52
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=4.1e-51  Score=433.33  Aligned_cols=418  Identities=21%  Similarity=0.279  Sum_probs=354.7

Q ss_pred             cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861           64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF  143 (587)
Q Consensus        64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  143 (587)
                      ++.+|+++.+++.++.++.++|+|+|..++... . +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-H-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-H-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            346789999999999999999999999988754 3 78889999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861          144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS  223 (587)
Q Consensus       144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~  223 (587)
                      ||.+|++.||.+++.+....+.+...++++++..++... +.|            ...+++++++++...+|++|+|..+
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPW------------VLTITCVVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-SHH------------HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-ccH------------HHHHHHHHHHHHHHHHHHhchHHHH
Confidence            999999999999999999999998888888876554110 011            1236778888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCc---chhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcch
Q 007861          224 ILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPF---GVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPL  300 (587)
Q Consensus       224 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~  300 (587)
                      |++.+++.++++.++.+++.++.+.+.+++.+  ++.+.   ++.+++.++..++|+|.|+|..++++||+|||+|++||
T Consensus       149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~  226 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMA--AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI  226 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC--C-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhccc--ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH
Confidence            99999999999998888888777665544431  22222   25578889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 007861          301 GIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGR  379 (587)
Q Consensus       301 ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~  379 (587)
                      ++..+..+++++|++..++.....|++++.. ++|+.++++..+++++..++.+..+++.+++.++.+++.+|+++++||
T Consensus       227 a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~  306 (445)
T 3l1l_A          227 ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD  306 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888887653 578999998888889999999999999999999999999999999999


Q ss_pred             cCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007861          380 ARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-------TELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPP  452 (587)
Q Consensus       380 dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  452 (587)
                      ||.+|++|+|+| |+++|+++++++.+++.++.+.       ..++.+.++.++..++.|.+.+++.++.|+|++ +   
T Consensus       307 dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~---  381 (445)
T 3l1l_A          307 DGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G---  381 (445)
T ss_dssp             TTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G---
T ss_pred             CCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c---
Confidence            999999999999 6799999999999987776654       347899999999999999999999999887653 1   


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC
Q 007861          453 SHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTL  532 (587)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (587)
                                                                      |        |.|..++.+.++.+.+++++...
T Consensus       382 ------------------------------------------------~--------r~~~~~~~~~~~~~~~~~~~~~~  405 (445)
T 3l1l_A          382 ------------------------------------------------K--------ARPAYLAVTTIAFLYCIWAVVGS  405 (445)
T ss_dssp             ------------------------------------------------G--------GCTTTHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------------c--------ccchhHHHHHHHHHHHHHHHHHc
Confidence                                                            1        12456678888888888888888


Q ss_pred             ChHHHHHHHHHHHHHHHHhhhhccccc
Q 007861          533 KLLSYQRFAMWTCLITLFYVLYGVHST  559 (587)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (587)
                      ....+.....++++|+.+|.+++||++
T Consensus       406 ~~~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          406 GAKEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            888888889999999998877766653
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.11
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.11  E-value=0.12  Score=51.85  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             ChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHH
Q 007861           71 MWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIA  111 (587)
Q Consensus        71 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~  111 (587)
                      +..+.+.-++|..+|.|-+...+.....+||..-++.+++.
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~   46 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIA   46 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHH
Confidence            34566677788889999888888887776776655555443