Citrus Sinensis ID: 007862
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RX77 | 620 | Nitrate transporter 1.7 O | yes | no | 0.962 | 0.911 | 0.604 | 0.0 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.964 | 0.982 | 0.563 | 0.0 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.909 | 0.962 | 0.525 | 1e-159 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.926 | 0.926 | 0.442 | 1e-140 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.931 | 0.887 | 0.448 | 1e-140 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.933 | 0.861 | 0.443 | 1e-134 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.908 | 0.953 | 0.406 | 1e-121 | |
| Q9M817 | 607 | Probable peptide transpor | no | no | 0.921 | 0.891 | 0.389 | 1e-119 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.904 | 0.898 | 0.391 | 1e-114 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.914 | 0.942 | 0.387 | 1e-114 |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/587 (60%), Positives = 451/587 (76%), Gaps = 22/587 (3%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK 126
N PL+GA+ISDTY+GRFKTI FAS A +L G++T+TLTA PQLHP
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLL------------GLITITLTASFPQLHPAS 153
Query: 127 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 186
C+ P C N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQFD T+EGVKG+
Sbjct: 154 CNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVA 211
Query: 187 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 246
SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+P
Sbjct: 212 SFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKP 271
Query: 247 EGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA 306
EGSIFSGI QV+VAA KKR+L LP + D +YDP K VLSKL ++QFR L+KAA
Sbjct: 272 EGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAA 330
Query: 307 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA 366
++++ +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +++ QGTFTVSQA
Sbjct: 331 VVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQA 389
Query: 367 MKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIG 426
+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G
Sbjct: 390 LKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTG 449
Query: 427 MIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF 482
++F+I SMIVAG+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEF
Sbjct: 450 IVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEF 509
Query: 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 542
FN QFP+HM+SIANSL SF +SYLSS L+T+VH + H PDWL +++AG+LDYF
Sbjct: 510 FNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYF 569
Query: 543 YFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 587
Y+LIA LG +N+VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 570 YYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/589 (56%), Positives = 434/589 (73%), Gaps = 23/589 (3%)
Query: 1 MVGDQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILN 60
+V ++K +KK GGW+A+ +ILGNET E+L +IG+ ANFM+YL +HM A N+
Sbjct: 3 VVENRKILPEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYY 62
Query: 61 IWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLP 120
+W G+TNFAPLLGA ISD YIGRFKTI +AS+ +IL G++TVTLTA LP
Sbjct: 63 LWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSIL------------GLMTVTLTACLP 110
Query: 121 QLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180
QLHPP C+ +C N +QLG+L +GLG LSIG+GGIRPCSIPFGVDQFD T++
Sbjct: 111 QLHPPPCNNPH--PDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQ 168
Query: 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240
G+KG+ SFFNWYY T T+V++ + TV+VY+Q +VSWVIGF IPT LM A++LF VG +
Sbjct: 169 GLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRF 227
Query: 241 YVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFR 300
YV V+PEGS+FSGI +V+VAA KKR L + D +Y+PP K VLSKLPLT QF+
Sbjct: 228 YVYVKPEGSVFSGIARVIVAARKKRDLKISLVD-DGTEEYYEPPVKPGVLSKLPLTDQFK 286
Query: 301 FLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGT 360
FL+KAA+I+D + L +G P N+WRLCSIQ+VEEVKCLI+++P+W+AGIIS+ +++ Q T
Sbjct: 287 FLDKAAVILDGD-LTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQAT 345
Query: 361 FTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLL 420
F V QA KM+RH+GP F+IP ++ VIS ITIG+W+P Y+ +LVP L ++ K +TLL
Sbjct: 346 FMVFQATKMDRHMGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLL 403
Query: 421 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQI 480
QR+GIG++F+ILSM AG VE RR A M+Q+SVFWLA LILMG CE+FN IG I
Sbjct: 404 QRMGIGIVFAILSMFTAGFVEGVRRTRAT--EMTQMSVFWLALPLILMGLCESFNFIGLI 461
Query: 481 EFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 540
EFFN QFP+HM+SIANSL SF A+YLSSLL+T VH V+ HPDWL D+D G+LD
Sbjct: 462 EFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLD 521
Query: 541 YFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 587
YFY+LIA LG +N+VYF YCA RY+YK+G I+ ++ L ++P ++
Sbjct: 522 YFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQIEDFNEEKSLLDIEPNQR 570
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 294/560 (52%), Positives = 402/560 (71%), Gaps = 26/560 (4%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
Q+KP GWKAMPYI+GNET ERLAT GL+ANFMVY+++EYHM+Q A ++N W +TNFA
Sbjct: 16 QRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFA 75
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDV 129
P++GAFISD+Y G+F TI F SIA +L GML +T T+ +P L PP C
Sbjct: 76 PIIGAFISDSYTGKFNTIVFGSIAELL------------GMLVLTFTSLVPNLRPPPC-T 122
Query: 130 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 189
A GQC + QL VL+ GL LLS+GTGGIR CS+PF +DQFD +T+EG +G SFF
Sbjct: 123 ADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSFF 182
Query: 190 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGS 249
+WYYTT T+V L++ T+++Y+Q+++SW IGF IPTVL A++L VG + YV V+PEGS
Sbjct: 183 SWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGS 242
Query: 250 IFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIV 309
+FSG+ +VLVAAYKKR+ G +D+H + + +KL LT QFRFLNKA +++
Sbjct: 243 VFSGVFKVLVAAYKKRKARFTSG-IDYHQPLLETDLQ---SNKLVLTDQFRFLNKAVIVM 298
Query: 310 DNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKM 369
+N+E + +WR C+++Q+E++K +I IIPI+A+ II +++QQ TFTVSQA+KM
Sbjct: 299 NNDEAGNE-----EWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKM 353
Query: 370 NRHL-GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMI 428
+ G + IPP ++ VIS++ IG+WLPFY+TVLV + ITK GGI+LLQ++GIG I
Sbjct: 354 DLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNI 413
Query: 429 FSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP 488
FSI +M+++G+VER RR L+ + ++SVFWL PQ +LMGF + F I+G EFFNKQ P
Sbjct: 414 FSISTMLISGIVERKRR-DLSLNGV-KMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVP 471
Query: 489 DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAG 548
+M+SI NSLL+ ASYLSS +++IVH VTAR G WLT+DID +LD FY+ IA
Sbjct: 472 INMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQ-SWLTDDIDKSKLDCFYYFIAA 530
Query: 549 LGGLNIVYFLYCARRYRYKS 568
L LN ++F +CARRYRY++
Sbjct: 531 LSTLNFIFFFWCARRYRYRN 550
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/574 (44%), Positives = 362/574 (63%), Gaps = 30/574 (5%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L +G +N ++YL ++M +AA ++NI+GG +NF ++ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 FISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPF 134
F+ D+Y GR+KT++FA IA L G + + LTA + LHP +C AK
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFL------------GSVAMDLTAVIHPLHPAQC--AKEIG 127
Query: 135 GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 194
C + Q+ L + LL IG GGIRPC++PFG DQFD T EG +GI SFFNWY+
Sbjct: 128 SVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFF 187
Query: 195 TFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254
TFT +++ T++VY+Q +VSW IG IP +LM+ I+F G KLYV V+ GS I
Sbjct: 188 TFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSI 247
Query: 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNEL 314
+V+V A KKRRL P G + Y+ F SKL T QFRFL+K+A+ +++L
Sbjct: 248 TRVIVVAIKKRRLK-PVGPNE----LYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDKL 302
Query: 315 KPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLG 374
DG+PV+ W+LCS+QQVEEVKC+I+++P+W + + + QQ T+T+ Q+++ +R LG
Sbjct: 303 NKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLG 362
Query: 375 P-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 433
P FQIP G+ V M+ + +++P YD VLVP LRK T +GGIT LQR+G G+ I S
Sbjct: 363 PGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITS 422
Query: 434 MIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 483
M+V+ +VE+ RR A P +S +S WL PQL+LMG +A +GQ+EF+
Sbjct: 423 MMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFY 482
Query: 484 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 543
KQFP++M+S A SL +C G ASYLS+ L++ VH T WL D++ GRL+YFY
Sbjct: 483 YKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFY 542
Query: 544 FLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQN 577
FL+AG+ LN+ YFL + YRYK + +D +
Sbjct: 543 FLVAGMMTLNLAYFLLVSHWYRYKDVVAKDKDMD 576
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/577 (44%), Positives = 357/577 (61%), Gaps = 30/577 (5%)
Query: 4 DQKQKDQKKP--GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNI 61
++ ++QKK GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+N
Sbjct: 33 EEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINA 92
Query: 62 WGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQ 121
+ G NF + AF+ DTY GR+KT++ A IA L G + LTA +PQ
Sbjct: 93 FSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFL------------GSFVILLTAAVPQ 140
Query: 122 LHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181
LHP C A C + Q+ L+MGLG L +G GGIRPC++ FG DQF+ ++ G
Sbjct: 141 LHPAACGTAADSI--CNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESG 198
Query: 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY 241
+GI+SFFNWY+ TFT +++ T++VY+Q +VSW IG IP VLM A ++F G KLY
Sbjct: 199 KRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLY 258
Query: 242 VLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRF 301
V ++ GS +GI QV+ A KKR L P Q + Y PP + SKL T QFRF
Sbjct: 259 VKIKASGSPLAGIAQVIAVAIKKRGLK-PAKQPWLNLYNYYPPK--YANSKLKYTDQFRF 315
Query: 302 LNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTF 361
L+KAA++ ++L+PDG P + W+LC++QQVEEVKC+++++PIW A I +I+QQ T+
Sbjct: 316 LDKAAILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTY 375
Query: 362 TVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLL 420
V QA++ +R LG F IP T V M + +++ YD VLVP +R+IT + GITLL
Sbjct: 376 PVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLL 435
Query: 421 QRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGF 470
QRIG G+ F+ S++VAG VE RR A P +S +S WL PQL L G
Sbjct: 436 QRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGV 495
Query: 471 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL 530
EAF IGQ+EF+ KQFP++M+S A S+ + G +SYL S LI VH T +WL
Sbjct: 496 AEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWL 555
Query: 531 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 567
D++ GRLD FYF+IAG+ +N YFL +R YRYK
Sbjct: 556 AEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYRYK 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/582 (44%), Positives = 360/582 (61%), Gaps = 34/582 (5%)
Query: 2 VGDQKQKDQKK--PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANIL 59
V D +++Q+K GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+
Sbjct: 49 VVDSFEEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATII 108
Query: 60 NIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWL 119
N + G NF + AF+ DTY GR+KT++ A IA L G + LTA +
Sbjct: 109 NAFSGTINFGTFIAAFLCDTYFGRYKTLSVAVIACFL------------GSFVILLTAAI 156
Query: 120 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179
P LHP C C+ + Q+ L+MGLG L +G GGIRPC++ FG DQF+ ++
Sbjct: 157 PSLHPVACGNKI----SCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSE 212
Query: 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239
G KGINSFFNWY+ TFT +I+ T +VYIQ +VSW IG IP LM A ++F G +
Sbjct: 213 SGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDR 272
Query: 240 LYVLVEPEGSIFSGIGQVLVAAYKKRRLT-LPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ 298
LYV V+ GS +GI +V+ AA KKR L + Q ++ Y+ P + + L T Q
Sbjct: 273 LYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVN----LYNHIPSNYANTTLKYTDQ 328
Query: 299 FRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQ 358
FRFL+KAA++ +L DGT + W+LC++QQVEEVKC++++IPIW A I +I+ Q
Sbjct: 329 FRFLDKAAIMTPEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQ 388
Query: 359 GTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGI 417
T+ V QA++ +R LG F+IP T V M + +++ FYD VLVP+LR++T E GI
Sbjct: 389 MTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGI 448
Query: 418 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLIL 467
+LLQRIG G F+I+S++V+G +E RR A P +S +S WL PQL L
Sbjct: 449 SLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTL 508
Query: 468 MGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHP 527
G EAF IGQ+EF+ KQFP++MKS A S+ + G +SYL+S LI+ VH TA
Sbjct: 509 AGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSG 568
Query: 528 DWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG 569
+WL D++ +LDYFYF++ GL +N+ YFL AR YRYK G
Sbjct: 569 NWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWYRYKGG 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 339/559 (60%), Gaps = 26/559 (4%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
+K+ GGW+A+ YI+ NE+FE+LA++ L+ N VYL+ +Y++ N++NIW G N
Sbjct: 15 KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDV 129
L GAF+SD Y+GRF T+ SIA+ + GM LTA LP L P C
Sbjct: 75 TLAGAFVSDAYLGRFWTLLLGSIASFI------------GMGIFALTAALPSLRPDACI- 121
Query: 130 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 189
P QLGVL GLGLL+IG GG+RPC+I FG DQFD +T +G + +FF
Sbjct: 122 --DPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFF 179
Query: 190 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGS 249
NW+Y +FTV ++I T +VYIQ ++SWVIGF IPT + +I F++G+ Y+ + EGS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGS 239
Query: 250 IFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIV 309
+F+ I +V+ AA KKR++ + G D P V K H+ RF +KA+++
Sbjct: 240 VFADIVKVVTAACKKRKVKPGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVT 295
Query: 310 DNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKM 369
+ NEL DG +WRLCS+QQV+ +KC+ I+P+W GI QQ + + QAM+M
Sbjct: 296 NPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355
Query: 370 NRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMI 428
++ GP FQ+P G + ++SMIT+ +W+ Y+ V++P +++IT + +TL RI I M
Sbjct: 356 DKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEIVM- 414
Query: 429 FSILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQ 486
I+ MIVAG E+ RRASA + +S VS+ L PQ L G EAF+ + +EF +
Sbjct: 415 -GIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVR 473
Query: 487 FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFL 545
P+HM+++A ++ F S ASY+ +LLI ++ VT + G WL + D++ RL+ ++F+
Sbjct: 474 MPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFI 532
Query: 546 IAGLGGLNIVYFLYCARRY 564
IAG+ N++YF A RY
Sbjct: 533 IAGIQVANLLYFRLFASRY 551
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/572 (38%), Positives = 342/572 (59%), Gaps = 31/572 (5%)
Query: 5 QKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG 64
Q + +K GG MP+I+ NE FE++A+ GLL N ++YL+++Y N+L +W
Sbjct: 14 QTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSA 73
Query: 65 VTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHP 124
+NF PLLGAF+SD+Y+GRF TI+ AS+++ L GM+ + LTA LPQ+ P
Sbjct: 74 ASNFTPLLGAFLSDSYLGRFLTISIASLSSFL------------GMVLLWLTAMLPQVKP 121
Query: 125 PKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVK 183
CD C S+ + QL +L L+SIG+GGIRPCS+ FG DQ D + + +
Sbjct: 122 SPCDPTAAG-SHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNER 180
Query: 184 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVL 243
+ SFF WYY + V +LI T +VYIQ+ + W IGFG+P VLM+ A +LF++ LYV
Sbjct: 181 VLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVT 240
Query: 244 VEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 303
S+F+G+ Q +VAAYKKR+L+LP DHH F K P + + RFLN
Sbjct: 241 RGVTKSLFTGLAQAIVAAYKKRKLSLP----DHHDSFDCYYHMKDSEIKAP-SQKLRFLN 295
Query: 304 KAAMIVD-NNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFT 362
KA +I + E+ DG +N WRLC+ +VEE+K LIK+IPIW+ GI+ ++ + Q +F
Sbjct: 296 KACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIM-MSINTSQSSFQ 354
Query: 363 VSQAMKMNRHL---GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 419
+ QA M+R L G FQ+P G+ G+ ++I + LW+ YD ++P KI +++
Sbjct: 355 LLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSV 414
Query: 420 LQRIGIGMIFSILSMIVAGLVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCE 472
R+G+G+ S L+M ++ +VE RR A + + + +S WL PQ +L G E
Sbjct: 415 KLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAE 474
Query: 473 AFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN 532
A IGQ EFF +FP M SIA SL AS L+S+++ V+ +T+R+G W+++
Sbjct: 475 ALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSD 534
Query: 533 DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 564
+I+ G +Y+Y+++A + +N++Y++ C+ Y
Sbjct: 535 NINKGHYNYYYWVLAIMSFINVIYYVICSWSY 566
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/569 (39%), Positives = 331/569 (58%), Gaps = 38/569 (6%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
++ GG MP+I+ NE FE++A+ GLL N ++YL+ +Y + +L +W TNF
Sbjct: 21 RRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFM 80
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDV 129
PL+GAF+SD+Y+GRF TI AS++++L GM+ + LTA LPQ+ P C
Sbjct: 81 PLVGAFLSDSYLGRFLTIVIASLSSLL------------GMVVLWLTAMLPQVKPSPC-- 126
Query: 130 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINSF 188
C SA S QL +L L+SIG+GGIRPCS+ FG DQ D + + + + SF
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186
Query: 189 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEG 248
F WYY + +V +LI TV+VYIQD + W IGFGIP +LM+ A LF+ LYV +
Sbjct: 187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246
Query: 249 SIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL---THQFRFLNKA 305
S+F+G+ QV+ AAY KR LTLP DHH D + L L + + RFLNKA
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLP----DHH----DSRDCYYRLKDSELKAPSDKLRFLNKA 298
Query: 306 AMIVDNNE-LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVS 364
I + +E L DG +NQWRLC+ QVE++K L+K+IP+W+ GI+ ++SQ +F +
Sbjct: 299 CAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQN-SFQLL 357
Query: 365 QAMKMNRHLGPK--FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQR 422
QA M+R L FQIP G+ G+ ++I + W+ YD ++P KI + + R
Sbjct: 358 QAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIR 417
Query: 423 IGIGMIFSILSMIVAGLVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCEAFN 475
+G+G+ S L+M V+ VE RR +A + +S WL PQ +L G EA
Sbjct: 418 MGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALT 477
Query: 476 IIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID 535
IGQ EFF +FP M SIA SL A+ L+S+++ V +++ G+ W+ ++I+
Sbjct: 478 GIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNIN 536
Query: 536 AGRLDYFYFLIAGLGGLNIVYFLYCARRY 564
G DY+Y+++A L +N++Y++ C+ Y
Sbjct: 537 KGHYDYYYWVLAILSFVNVIYYVVCSWSY 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/571 (38%), Positives = 333/571 (58%), Gaps = 34/571 (5%)
Query: 9 DQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNF 68
+++K G WKA +ILGNE ERLA G+ N + YL + +AAN + W G
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 APLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKC- 127
PL+GAFI+D Y+GR+ TI A+ I ++ GM +TL+A +P L P C
Sbjct: 81 TPLIGAFIADAYLGRYWTI--ATFVFIYVS----------GMTLLTLSASVPGLKPGNCN 128
Query: 128 -DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 186
D P NS Q V + L ++++GTGGI+PC FG DQFD + +
Sbjct: 129 ADTCHP--------NSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180
Query: 187 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 246
SFFNW+Y + V LI TVLV+IQ +V W GFG+PTV M+ A+ F G + Y L P
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240
Query: 247 EGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFY--DPPPKLFVLSKLPLTHQFRFLNK 304
GS + I QV+VAA++K + +P+ D +F D + KL T +F +K
Sbjct: 241 GGSPLTRIFQVIVAAFRKISVKVPE---DKSLLFETADDESNIKGSRKLVHTDNLKFFDK 297
Query: 305 AAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVS 364
AA+ ++ +K DG VN WRLCS+ QVEE+K +I ++P+WA GI+ T SQ T V
Sbjct: 298 AAVESQSDSIK-DG-EVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 365 QAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG 424
Q M++H+G F+IP ++ + +++ W P YD ++P RK T++E G T LQR+G
Sbjct: 356 QGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMG 415
Query: 425 IGMIFSILSMIVAGLVERGR-----RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQ 479
IG++ SI +MI AG++E R +A+ +S+FW PQ +L+G E F IGQ
Sbjct: 416 IGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQ 475
Query: 480 IEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 539
+EFF Q PD M+S+ ++L + +YLS++L+T+V +T ++G P W+ ++++ G L
Sbjct: 476 LEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHL 535
Query: 540 DYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 570
DYF++L+A L LN + +L+ ++RY+YK +
Sbjct: 536 DYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| 255558256 | 621 | nitrate transporter, putative [Ricinus c | 0.952 | 0.900 | 0.693 | 0.0 | |
| 225424885 | 619 | PREDICTED: nitrate transporter 1.7 [Viti | 0.960 | 0.911 | 0.643 | 0.0 | |
| 357486541 | 608 | Peptide transporter PTR1 [Medicago trunc | 0.960 | 0.927 | 0.656 | 0.0 | |
| 356498154 | 620 | PREDICTED: nitrate transporter 1.7-like | 0.955 | 0.904 | 0.655 | 0.0 | |
| 356567570 | 622 | PREDICTED: nitrate transporter 1.7-like | 0.950 | 0.897 | 0.661 | 0.0 | |
| 356501934 | 629 | PREDICTED: nitrate transporter 1.7-like | 0.948 | 0.885 | 0.645 | 0.0 | |
| 224102695 | 552 | predicted protein [Populus trichocarpa] | 0.911 | 0.969 | 0.691 | 0.0 | |
| 12325237 | 644 | putative peptide transporter; 37139-3325 | 0.982 | 0.895 | 0.597 | 0.0 | |
| 297790444 | 619 | proton-dependent oligopeptide transport | 0.947 | 0.898 | 0.612 | 0.0 | |
| 18409391 | 620 | nitrate transporter 1.7 [Arabidopsis tha | 0.962 | 0.911 | 0.604 | 0.0 |
| >gi|255558256|ref|XP_002520155.1| nitrate transporter, putative [Ricinus communis] gi|223540647|gb|EEF42210.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/575 (69%), Positives = 469/575 (81%), Gaps = 16/575 (2%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
QK+PGGW+AMPYILGNETFERLAT GLLANFMVYL+KE+HM Q +AANI+NIW G+TNFA
Sbjct: 51 QKQPGGWRAMPYILGNETFERLATFGLLANFMVYLMKEFHMEQVTAANIINIWSGLTNFA 110
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDV 129
PLLGAFISD Y+GRF+TI FAS AA L GM+TVTLTAWLP LHP KC
Sbjct: 111 PLLGAFISDAYVGRFRTIAFASCAAFL------------GMVTVTLTAWLPNLHPQKCHQ 158
Query: 130 AKPPF--GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187
C+SA +QL VL+MGLG LSIGTGGIRPCSIPFGVDQFD TT+EG+KGINS
Sbjct: 159 QSQQQYADNCESATPLQLAVLLMGLGFLSIGTGGIRPCSIPFGVDQFDPTTEEGMKGINS 218
Query: 188 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPE 247
F+NWYYTTFT+VILIT TV+VYIQDS+SWVIGF IPTVLM+ +I+LF +G K+Y+ V+PE
Sbjct: 219 FYNWYYTTFTLVILITLTVVVYIQDSISWVIGFSIPTVLMLCSILLFFIGTKIYIHVKPE 278
Query: 248 GSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAM 307
GSIFSG+ QV VAAYKKRRL LP GIFYDP K VLSKLPLT+QFRFLNKAAM
Sbjct: 279 GSIFSGLAQVFVAAYKKRRLKLPDHGEVVDGIFYDPTVKEAVLSKLPLTNQFRFLNKAAM 338
Query: 308 IVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM 367
I + N++ PDG+ N+WRLCSIQQ+EEVKCL KI PIWA+GI+S T+I QQGTFTVSQAM
Sbjct: 339 I-EKNDINPDGSCANEWRLCSIQQIEEVKCLFKIGPIWASGIVSFTAILQQGTFTVSQAM 397
Query: 368 KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 427
KM+RHLG KFQIP G++ V SMITI +WLPFYD + VPALRKITKHEGGITLLQRIGIG+
Sbjct: 398 KMDRHLGHKFQIPAGSISVFSMITIAIWLPFYDRIAVPALRKITKHEGGITLLQRIGIGI 457
Query: 428 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
+FS+LSMIVAGLVER RRA+A +P + +SV WL PQL++MG CEAFNIIG IEF+NK+F
Sbjct: 458 VFSVLSMIVAGLVERDRRAAAISNPGTPMSVMWLVPQLVIMGLCEAFNIIGHIEFYNKEF 517
Query: 488 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 547
P HM+S+ANSL FCSF ASYLS+L+I+IVH VT HPDWLT D++AG+LD +YF++A
Sbjct: 518 PGHMRSMANSLFFCSFAGASYLSTLVISIVHKVTRTRDHPDWLTKDLNAGKLDRYYFVLA 577
Query: 548 GLGGLNIVYFLYCARRYRYKSGIQSLEDQ-NDLEL 581
G+G L YFLYCAR Y+YK+ +Q + D+EL
Sbjct: 578 GMGILTFFYFLYCARLYQYKTPVQIDNNSYRDVEL 612
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424885|ref|XP_002269340.1| PREDICTED: nitrate transporter 1.7 [Vitis vinifera] gi|296086440|emb|CBI32029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/583 (64%), Positives = 474/583 (81%), Gaps = 19/583 (3%)
Query: 4 DQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG 63
D + +KPGGW +M YILGNETFERLAT GLLANFMVYLL E+H++Q A N+LNIW
Sbjct: 44 DVSDEGPRKPGGWNSMVYILGNETFERLATFGLLANFMVYLLNEFHLDQVYATNVLNIWS 103
Query: 64 GVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLH 123
G TNFAPL+GAFISD +GRF+TI FAS A++L GM+T+TLT+W+PQLH
Sbjct: 104 GTTNFAPLVGAFISDACVGRFRTIAFASFASLL------------GMVTLTLTSWIPQLH 151
Query: 124 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183
PP C + QC S Q+G+L +GLG L+IGTGGIRPCSIPFGVDQFD TT++G +
Sbjct: 152 PPSCTEDQQQNDQCTGPTSAQMGILFLGLGFLTIGTGGIRPCSIPFGVDQFDPTTEQGRR 211
Query: 184 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVL 243
GINSF+NWYYT+FT+V++I T++VYIQDSVSWV+GFGIPT+LM+G+IILF +G ++YV
Sbjct: 212 GINSFYNWYYTSFTLVLMIALTLVVYIQDSVSWVLGFGIPTLLMVGSIILFFLGTRVYVY 271
Query: 244 VEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFL 302
V+PEGSIFSGI +V VAAYKKRR+ +P + + G +YDPP K +++KLP T +FR+L
Sbjct: 272 VKPEGSIFSGIARVFVAAYKKRRVKIPV-EGEKEGAYYDPPLTKGSIVAKLPFTKRFRWL 330
Query: 303 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFT 362
NKAA+I++ E +G P NQWRLCSIQQVEEVKCL+KIIP+WA+GII T+ISQQGTFT
Sbjct: 331 NKAAVILE-GEKDANGCPSNQWRLCSIQQVEEVKCLLKIIPVWASGIICFTAISQQGTFT 389
Query: 363 VSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQR 422
VSQA+KM+RHLGPKFQIP G++ VISM+T+G+W+PFYD +LVPAL+KITKHEGGITLLQR
Sbjct: 390 VSQALKMDRHLGPKFQIPAGSLIVISMLTVGIWVPFYDRILVPALQKITKHEGGITLLQR 449
Query: 423 IGIGMIFSILSMIVAGLVERGRRASAHL----HPMSQVSVFWLAPQLILMGFCEAFNIIG 478
+GIG++FSILSM+V+GLVER RRASA L H ++ +SV WLAPQLILMGF EAFNIIG
Sbjct: 450 MGIGIVFSILSMVVSGLVERERRASAILQAGPHGIAPMSVMWLAPQLILMGFAEAFNIIG 509
Query: 479 QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 538
QIEF+NK+FP++M+SIANSL FC+ ASYLSSL++ IVH VT + G WLT +I+ G+
Sbjct: 510 QIEFYNKEFPENMRSIANSLFFCTIAGASYLSSLVVVIVHDVTGKAGRSAWLTKNINQGK 569
Query: 539 LDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 581
+DY+Y+L+AG+G LN++YFL+CARRYRYKSG E++ L+L
Sbjct: 570 VDYYYYLLAGMGVLNLIYFLFCARRYRYKSGHGVTEEEPHLDL 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486541|ref|XP_003613558.1| Peptide transporter PTR1 [Medicago truncatula] gi|355514893|gb|AES96516.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/583 (65%), Positives = 463/583 (79%), Gaps = 19/583 (3%)
Query: 4 DQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG 63
+ ++ +KKPGGWKAMP+ILGNE+FERLA GLLANFMVYL +E+H+ Q A+NILNIWG
Sbjct: 23 NYEKHGKKKPGGWKAMPFILGNESFERLAAFGLLANFMVYLTREFHLEQVHASNILNIWG 82
Query: 64 GVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLH 123
G++NFAPLLGAFISDTY GRFKTI FAS ++L GM VTLTAWLP+L
Sbjct: 83 GISNFAPLLGAFISDTYTGRFKTIAFASFFSLL------------GMTAVTLTAWLPKLQ 130
Query: 124 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183
PP C + QC +ANS Q+G L MGL LSIG+ GIRPCSIPFGVDQFD TT+EG K
Sbjct: 131 PPSCTPQQQALNQCVTANSSQVGFLFMGLIFLSIGSSGIRPCSIPFGVDQFDPTTEEGKK 190
Query: 184 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVL 243
GINSFFNWYYT+FTVV+L TQTV+VYIQDSVSW GF IPT+ M+ +IILF +G K+YV
Sbjct: 191 GINSFFNWYYTSFTVVLLFTQTVIVYIQDSVSWKFGFAIPTLCMLFSIILFFIGTKIYVH 250
Query: 244 VEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFL 302
V+PEGSIFS I QVLVA++KKR++ LP + GIFYDPP +LSKLP T+QFR L
Sbjct: 251 VKPEGSIFSSIAQVLVASFKKRKVKLPN-EKHVDGIFYDPPLIGKAILSKLPPTNQFRVL 309
Query: 303 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFT 362
+KAA++++ +L PDGT VNQW L SIQQVEEVKCL + +PIWAAGI+ T+++QQGTF
Sbjct: 310 DKAALVME-GDLNPDGTIVNQWNLVSIQQVEEVKCLARTLPIWAAGILGFTAMAQQGTFI 368
Query: 363 VSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQR 422
VSQAMKM+RHLGPKFQIP G++GVIS+I IGLW+PFYD + VP+LRKITK+EGGITLLQR
Sbjct: 369 VSQAMKMDRHLGPKFQIPAGSLGVISLIVIGLWVPFYDRICVPSLRKITKNEGGITLLQR 428
Query: 423 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ----VSVFWLAPQLILMGFCEAFNIIG 478
IGIGM+FSI+SMIVAGLVE+ RR A+ +P Q +SV WL PQL+LMGFCEAFNIIG
Sbjct: 429 IGIGMVFSIISMIVAGLVEKVRRDVANSNPTPQGIAPMSVMWLFPQLVLMGFCEAFNIIG 488
Query: 479 QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 538
IEFFN+QFPDHM+SIAN+L CSF A+Y+SS+L+ VH VT H HPDWLTN+I+ GR
Sbjct: 489 LIEFFNRQFPDHMRSIANALFSCSFALANYVSSILVITVHSVTKTHNHPDWLTNNINEGR 548
Query: 539 LDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 581
LDYFY+L+AG+G LN+VYFLY ++RY YK + E D+EL
Sbjct: 549 LDYFYYLLAGVGVLNLVYFLYVSQRYHYKGSVDIQEKPMDVEL 591
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498154|ref|XP_003517918.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/580 (65%), Positives = 459/580 (79%), Gaps = 19/580 (3%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
PGGWKAMP+ILGNETFERLA GL ANFMVYL +E+H++Q A+NILNIW G+TNF PL+
Sbjct: 55 PGGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLI 114
Query: 73 GAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKP 132
GAFISD Y+GRF TI FAS +++L GM+ VTLTAWLP+LHPP C +
Sbjct: 115 GAFISDAYVGRFWTIAFASFSSLL------------GMVVVTLTAWLPELHPPPCTPQQQ 162
Query: 133 PFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 192
QC A++ LG L+ GL LLS+G+ GIRPCSIPFGVDQFD +TDEG KGINSFFNWY
Sbjct: 163 ALNQCVKASTPHLGALLTGLCLLSVGSAGIRPCSIPFGVDQFDPSTDEGKKGINSFFNWY 222
Query: 193 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
YTTFTVV+LITQTV+VYIQDSVSW IGF IPTV M +II+F VG ++YV V+PEGSIF+
Sbjct: 223 YTTFTVVLLITQTVVVYIQDSVSWKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFT 282
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDN 311
I QVLVAAY+KR++ LP+ + G+FYDPP VLSKLPLT+QFR LNKAA+I++
Sbjct: 283 SIAQVLVAAYRKRKVELPR-EKHVDGVFYDPPLIGTNVLSKLPLTNQFRGLNKAAVIME- 340
Query: 312 NELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNR 371
EL PD + N+W+L SIQQVEEVKCL +I PIWAAGI+ TS++QQGTFTVSQA+KM+R
Sbjct: 341 GELNPDRSRANKWKLVSIQQVEEVKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDR 400
Query: 372 HLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI 431
HLGPKFQIP G++GVIS ITIG+W+PFYD ++VP LR++TKHEGGITLLQRIGIGM+FSI
Sbjct: 401 HLGPKFQIPAGSLGVISFITIGVWVPFYDRIMVPTLRRVTKHEGGITLLQRIGIGMVFSI 460
Query: 432 LSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
LSM+VA LVE+ RR A+ +P ++ +SV WL PQL+LMG CEAFN+IGQIEFFN+QF
Sbjct: 461 LSMVVAALVEKVRRDLANANPSPLGIAPMSVLWLVPQLVLMGLCEAFNVIGQIEFFNRQF 520
Query: 488 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 547
PDHM+SIAN+L CSF ASY+SS L+T VH VT H HPDWLTNDI+AGRLDYFY+L+A
Sbjct: 521 PDHMRSIANALFSCSFAGASYVSSALVTTVHHVTRTHSHPDWLTNDINAGRLDYFYYLVA 580
Query: 548 GLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDPTKQ 587
G G LN+VYFL A+RY YK ++ D+EL K
Sbjct: 581 GTGVLNLVYFLIVAQRYHYKGSGDLQDNAQDVELASKGKS 620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567570|ref|XP_003551991.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/576 (66%), Positives = 464/576 (80%), Gaps = 18/576 (3%)
Query: 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAP 70
KK GGWKA+ +ILGNETFERLA GL ANFMVYL +E+H++Q A+NI+++W G++NF P
Sbjct: 55 KKRGGWKAIIFILGNETFERLAVFGLFANFMVYLTREFHLDQVYASNIISLWFGISNFTP 114
Query: 71 LLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVA 130
LLGAFISD Y+GRF+TI FAS + G++ V+LT+WLP+LHPP C
Sbjct: 115 LLGAFISDAYVGRFRTIAFASFGTL------------SGLIVVSLTSWLPELHPPSCTPQ 162
Query: 131 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 190
+ QC A+S Q+GVL+MGL L+IG+ G+RPCSIPFGVDQFD TTDEG KGINS+FN
Sbjct: 163 QLASRQCVRASSSQIGVLLMGLCFLTIGSAGVRPCSIPFGVDQFDPTTDEGRKGINSYFN 222
Query: 191 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSI 250
WYYTTFT+V+L+TQTV+VYIQDSVSW IGFGIPTV M+ +II+F VG ++YV V+PEGSI
Sbjct: 223 WYYTTFTMVLLVTQTVVVYIQDSVSWRIGFGIPTVCMLCSIIMFFVGTRVYVHVKPEGSI 282
Query: 251 FSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIV 309
FSGI QVLV AYKKR+L LP + G+FYDPP + V+SKLPLT +FR LNKAA+I+
Sbjct: 283 FSGIAQVLVTAYKKRKLNLPMSEEKPDGVFYDPPLIGITVVSKLPLTKEFRALNKAALIM 342
Query: 310 DNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKM 369
+ EL PDGT VNQWRL SIQQVEEVKCL +IIPIWAAGI+SL S++QQGTFTVSQAMKM
Sbjct: 343 E-GELNPDGTRVNQWRLVSIQQVEEVKCLARIIPIWAAGILSLISMTQQGTFTVSQAMKM 401
Query: 370 NRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 429
NRHLG KFQIP G+V VIS+ITI LWLPFYD +LVP LRK+TKHEGGITLL RIGIGM+F
Sbjct: 402 NRHLGAKFQIPAGSVSVISLITIALWLPFYDRILVPKLRKMTKHEGGITLLLRIGIGMVF 461
Query: 430 SILSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK 485
SILSM+VAG VE+ RR SA+ +P ++ +SV WLAP LILMG CEAFNIIGQIEFFN+
Sbjct: 462 SILSMVVAGYVEKVRRDSANSNPTPLGIAPMSVLWLAPHLILMGLCEAFNIIGQIEFFNR 521
Query: 486 QFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFL 545
QFP+HM+SI NS CSFG +SY+SS+++ IVH T H HPDWLT+DI+AGRLDYFY+L
Sbjct: 522 QFPEHMRSIGNSFFSCSFGVSSYVSSIIVNIVHHSTRTHSHPDWLTDDINAGRLDYFYYL 581
Query: 546 IAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 581
IAGL LN+V+F+Y ARRY+YK + L++ + +EL
Sbjct: 582 IAGLTSLNLVFFIYVARRYQYKGNVDLLDETHQVEL 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501934|ref|XP_003519778.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/576 (64%), Positives = 454/576 (78%), Gaps = 19/576 (3%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
P GWKAMP+ILGNETFERLA GL ANFMVYL +E+H++Q A+NILNIW G+TNF PL+
Sbjct: 53 PEGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLI 112
Query: 73 GAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKP 132
GAFISD Y+GRF+TI FAS +++L GM+ VTLTAWLP+LHPP C +
Sbjct: 113 GAFISDAYVGRFRTIAFASFSSLL------------GMVMVTLTAWLPELHPPPCTPQQQ 160
Query: 133 PFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 192
QC A++ G L+ GL LLSIG+ GIRPCSIPFGVDQFD TTDEG KGINSFFNWY
Sbjct: 161 ALNQCVKASTPHQGALLTGLCLLSIGSAGIRPCSIPFGVDQFDPTTDEGKKGINSFFNWY 220
Query: 193 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
YTTFTVV+LITQTV+VYIQDSVSW IGF IPTV M +II+F VG ++YV V+PEGSIF+
Sbjct: 221 YTTFTVVLLITQTVVVYIQDSVSWKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFT 280
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDN 311
I QVLVAAY+KR++ LP + G+FYDPP V SKLPLT+QFR LNKAA+I++
Sbjct: 281 SIAQVLVAAYRKRKVELP-SEKHVDGVFYDPPLTGTQVFSKLPLTNQFRCLNKAAVIME- 338
Query: 312 NELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNR 371
E PDG+ N+W++ SIQQVE+VKCL +I PIWAAGI+ TS++QQGTFTVSQA+KM+R
Sbjct: 339 GEQNPDGSRANKWKVVSIQQVEDVKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDR 398
Query: 372 HLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI 431
HLG KFQIP G++GVIS IT+G+W+PFYD ++VP LR+ITKHEGGITLLQRIGIGM+FSI
Sbjct: 399 HLGAKFQIPAGSLGVISFITVGVWVPFYDRIMVPTLRRITKHEGGITLLQRIGIGMVFSI 458
Query: 432 LSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
LSM+ A LVE+ RR A+ +P ++ +SV WL PQL+LMG CEAFN+IGQIEFFN+QF
Sbjct: 459 LSMVAAALVEKVRRDLANANPSPLGIAPMSVLWLVPQLVLMGLCEAFNVIGQIEFFNRQF 518
Query: 488 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 547
P+HM+SIAN+L FCS+ A+Y+SS L+T VH VT H HPDWLTNDI+AGRLDYFY+L+A
Sbjct: 519 PEHMRSIANALFFCSYAGANYVSSALVTTVHHVTRTHSHPDWLTNDINAGRLDYFYYLVA 578
Query: 548 GLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVD 583
G+G LN+VYFL A+RY YK + D+EL
Sbjct: 579 GIGVLNLVYFLIVAQRYHYKGSGDLQDTTQDVELAS 614
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102695|ref|XP_002312780.1| predicted protein [Populus trichocarpa] gi|222852600|gb|EEE90147.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/558 (69%), Positives = 459/558 (82%), Gaps = 23/558 (4%)
Query: 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD 78
MP+ILGNETFERLAT GLLANFMVYL++ +H+ Q +AAN++NIW GVTNFAPL+GAFISD
Sbjct: 1 MPFILGNETFERLATFGLLANFMVYLMRVFHLEQVTAANVINIWSGVTNFAPLVGAFISD 60
Query: 79 TYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVA--KPPFGQ 136
Y+GRFKTI FAS AA L GM+TVT TAW+P LHP KC+ + +G
Sbjct: 61 AYVGRFKTIAFASCAAFL------------GMVTVTSTAWVPYLHPQKCEPEGKQQSYGN 108
Query: 137 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196
C+S SMQLGVL++GLG LSIGTGGIRPCSIPFGVDQFD TT+EG+KGI+S++NWYYTTF
Sbjct: 109 CESPTSMQLGVLLLGLGFLSIGTGGIRPCSIPFGVDQFDPTTEEGIKGISSYYNWYYTTF 168
Query: 197 TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256
TVV+LIT T +VY+QDSVSWV+GFGIPTVLM+ +IILF +G ++YV V+PEGS+FSGI Q
Sbjct: 169 TVVMLITLTAVVYVQDSVSWVLGFGIPTVLMLCSIILFFIGTRIYVHVKPEGSVFSGIAQ 228
Query: 257 VLVAAYKKRRLTLPQG----QMDHHGIFYDPPPK--LFVLSKLPLTHQFRFLNKAAMIVD 310
V V+AYKKRRL LP Q+D GIFYDPP K L +LSKLPLT+Q RFLNKAAMI
Sbjct: 229 VFVSAYKKRRLKLPDNCDGEQVD--GIFYDPPIKDQLTILSKLPLTNQIRFLNKAAMIEK 286
Query: 311 NNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMN 370
+LKPDG+ QWRLCS+QQVEEVKCLIKI PIWA+ I+SLTS+ QQGTFTVSQA+KM+
Sbjct: 287 ETDLKPDGSCAKQWRLCSVQQVEEVKCLIKIGPIWASSIVSLTSMVQQGTFTVSQALKMD 346
Query: 371 RHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 430
RHLG KFQIP ++ V+S+ITIG+WLPFYD VLVPA+RK+TKHEGGIT+LQRIGIG +FS
Sbjct: 347 RHLGEKFQIPASSIIVVSLITIGIWLPFYDRVLVPAIRKVTKHEGGITILQRIGIGNVFS 406
Query: 431 ILSMIVAGLVERGRRASAHLHPMSQ-VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD 489
+LSM+VAGLVER RRA+A HP + +SVFWLAPQL++MG CEAF GQIEF+NKQFPD
Sbjct: 407 VLSMVVAGLVERERRAAAISHPEAAPMSVFWLAPQLVVMGLCEAFVGTGQIEFYNKQFPD 466
Query: 490 HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGL 549
HM+S+ NSL FCSF ASYLS++L +IVH VT HPDWLTND++AG LDYFYFL+AG+
Sbjct: 467 HMRSLGNSLFFCSFAGASYLSTMLGSIVHKVTGTRHHPDWLTNDLNAGNLDYFYFLLAGM 526
Query: 550 GGLNIVYFLYCARRYRYK 567
G +N YFL CA RYRYK
Sbjct: 527 GVVNWFYFLLCAHRYRYK 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12325237|gb|AAG52567.1|AC010675_15 putative peptide transporter; 37139-33250 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/599 (59%), Positives = 456/599 (76%), Gaps = 22/599 (3%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQ------------GKGMLTVT 114
N PL+GA+ISDTY+GRFKTI FAS A +LL +F + KG++T+T
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLLLNYFCIVRKRMNLLRDHAIEDDKGLITIT 165
Query: 115 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174
LTA PQLHP C+ P C N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQF
Sbjct: 166 LTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQF 223
Query: 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234
D T+EGVKG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM A+++F
Sbjct: 224 DQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMF 283
Query: 235 LVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLP 294
G K YV V+PEGSIFSGI QV+VAA KKR+L LP + D +YDP K VLSKL
Sbjct: 284 FAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLH 342
Query: 295 LTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTS 354
++QFR L+KAA++++ +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +
Sbjct: 343 RSNQFRCLDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAA 401
Query: 355 ISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHE 414
++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+IT H+
Sbjct: 402 MTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHK 461
Query: 415 GGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQLILMGF 470
GITLLQRIG G++F+I SMIVAG+VER RR + M+ +SVFWL+PQLILMG
Sbjct: 462 SGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGL 521
Query: 471 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL 530
CEAFNIIGQIEFFN QFP+HM+SIANSL SF +SYLSS L+T+VH + H PDWL
Sbjct: 522 CEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWL 581
Query: 531 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 587
+++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 582 NKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 640
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790444|ref|XP_002863113.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297308935|gb|EFH39372.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/576 (61%), Positives = 446/576 (77%), Gaps = 20/576 (3%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 45 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 104
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK 126
N PL+GA+ISDTY+GRFKTI FAS A +L G++T+TLTA LPQLHP
Sbjct: 105 NLTPLVGAYISDTYVGRFKTIAFASFATLL------------GLITITLTASLPQLHPAS 152
Query: 127 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 186
C+ P C N +Q GVL++GL LS+G+GGIRPCSIPFGVDQFD T++G KG+
Sbjct: 153 CNSQDPL--SCGGPNKLQFGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEDGAKGVA 210
Query: 187 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 246
SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+P
Sbjct: 211 SFFNWYYLTFTVVLIITQTVIVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKP 270
Query: 247 EGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA 306
EGSIFSGI QV+VAA KKR+L +P + D +YDP K VLSKL ++QFRFL+KAA
Sbjct: 271 EGSIFSGIAQVIVAARKKRKLKVP-AEDDGTVNYYDPAIKSSVLSKLHRSNQFRFLDKAA 329
Query: 307 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA 366
+I++ +L P+G P ++WRLCS+Q+VEEVKCLI+I+P+W+AGIISL +++ QGTFTVSQA
Sbjct: 330 VIIEG-DLTPEGAPADKWRLCSVQEVEEVKCLIRIVPVWSAGIISLAAMTTQGTFTVSQA 388
Query: 367 MKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIG 426
+KM RHLGP F+IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G
Sbjct: 389 LKMERHLGPHFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTG 448
Query: 427 MIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF 482
+IF+I SMIVAG+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEF
Sbjct: 449 IIFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEF 508
Query: 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 542
FN QFP+HM+SIANSL SF +SYLSSLL+T+VH + H PDWL +++AG+LDYF
Sbjct: 509 FNSQFPEHMRSIANSLFSLSFAGSSYLSSLLVTVVHKFSGGHDRPDWLNKNLNAGKLDYF 568
Query: 543 YFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 578
Y+LIA +G +N+VYF YCAR YRYK G+Q + + D
Sbjct: 569 YYLIAIMGVVNLVYFWYCARGYRYKVGLQIEDFEED 604
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409391|ref|NP_564979.1| nitrate transporter 1.7 [Arabidopsis thaliana] gi|75158815|sp|Q8RX77.1|PTR21_ARATH RecName: Full=Nitrate transporter 1.7 gi|19699104|gb|AAL90918.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|21928025|gb|AAM78041.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|332196872|gb|AEE34993.1| nitrate transporter 1.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/587 (60%), Positives = 451/587 (76%), Gaps = 22/587 (3%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK 126
N PL+GA+ISDTY+GRFKTI FAS A +L G++T+TLTA PQLHP
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLL------------GLITITLTASFPQLHPAS 153
Query: 127 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 186
C+ P C N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQFD T+EGVKG+
Sbjct: 154 CNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVA 211
Query: 187 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 246
SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+P
Sbjct: 212 SFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKP 271
Query: 247 EGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA 306
EGSIFSGI QV+VAA KKR+L LP + D +YDP K VLSKL ++QFR L+KAA
Sbjct: 272 EGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAA 330
Query: 307 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA 366
++++ +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +++ QGTFTVSQA
Sbjct: 331 VVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQA 389
Query: 367 MKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIG 426
+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G
Sbjct: 390 LKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTG 449
Query: 427 MIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF 482
++F+I SMIVAG+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEF
Sbjct: 450 IVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEF 509
Query: 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 542
FN QFP+HM+SIANSL SF +SYLSS L+T+VH + H PDWL +++AG+LDYF
Sbjct: 510 FNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYF 569
Query: 543 YFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 587
Y+LIA LG +N+VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 570 YYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.952 | 0.901 | 0.555 | 3.7e-167 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.783 | 0.798 | 0.540 | 1.4e-128 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.926 | 0.926 | 0.414 | 6.4e-115 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.913 | 0.870 | 0.418 | 4.2e-111 | |
| TAIR|locus:2196734 | 555 | AT1G69860 [Arabidopsis thalian | 0.812 | 0.859 | 0.437 | 1.9e-106 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.897 | 0.942 | 0.364 | 8.7e-95 | |
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.902 | 0.873 | 0.355 | 7e-93 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.908 | 0.935 | 0.359 | 6.5e-90 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.902 | 0.896 | 0.359 | 1.6e-88 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.899 | 0.902 | 0.350 | 2.4e-83 |
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1626 (577.4 bits), Expect = 3.7e-167, P = 3.7e-167
Identities = 323/581 (55%), Positives = 408/581 (70%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
PGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G TN PL+
Sbjct: 52 PGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLV 111
Query: 73 GAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKP 132
GA+ISDTY+GRFKTI FAS A +L G++T+TLTA PQLHP C+ ++
Sbjct: 112 GAYISDTYVGRFKTIAFASFATLL------------GLITITLTASFPQLHPASCN-SQD 158
Query: 133 PFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWY 192
P C N +Q RPCSIPFGVDQFD T+EGVKG+ SFFNWY
Sbjct: 159 PLS-CGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWY 217
Query: 193 YXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
Y YIQD VSW+IGF IPT LM A+++F G K YV V+PEGSIFS
Sbjct: 218 YMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFS 277
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNN 312
GI QV+VAA KKR+L LP + D +YDP K VLSKL ++QFR L+KAA++++
Sbjct: 278 GIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIEG- 335
Query: 313 ELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRH 372
+L P+G P ++WRLCS+Q+VEEVKCL SL +++ QGTFTVSQA+KM+R+
Sbjct: 336 DLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRN 395
Query: 373 LGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSIL 432
LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G++F+I
Sbjct: 396 LGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIF 455
Query: 433 SMIVAGLVERGRRA-SAHL-HP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP 488
SMIVAG+VER RR S + P M+ +SVFWL+PQLILMG CEAFNIIGQIEFFN QFP
Sbjct: 456 SMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFP 515
Query: 489 DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAG 548
+HM+SIANSL SF +SYLSS L+T+VH + H PDWL +++AG+LDYFY+LIA
Sbjct: 516 EHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAV 575
Query: 549 LGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 587
LG +N+VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 576 LGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 254/470 (54%), Positives = 320/470 (68%)
Query: 109 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIP 168
G++TVTLTA LPQLHPP C+ P +C N +Q RPCSIP
Sbjct: 99 GLMTVTLTACLPQLHPPPCNNPHPD--ECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIP 156
Query: 169 FGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMI 228
FGVDQFD T++G+KG+ SFFNWYY Y+Q +VSWVIGF IPT LM
Sbjct: 157 FGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMA 215
Query: 229 GAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLF 288
A++LF VG + YV V+PEGS+FSGI +V+VAA KKR L + D +Y+PP K
Sbjct: 216 CAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVD-DGTEEYYEPPVKPG 274
Query: 289 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXX 348
VLSKLPLT QF+FL+KAA+I+D +L +G P N+WRLCSIQ+VEEVKCL
Sbjct: 275 VLSKLPLTDQFKFLDKAAVILDG-DLTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAG 333
Query: 349 XXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 408
S+ +++ Q TF V QA KM+RH+GP F+IP ++ VIS ITIG+W+P Y+ +LVP L
Sbjct: 334 IISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLW 393
Query: 409 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILM 468
++ K +TLLQR+GIG++F+ILSM AG VE RR A M+Q+SVFWLA LILM
Sbjct: 394 RMRKFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRRTRAT--EMTQMSVFWLALPLILM 449
Query: 469 GFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPD 528
G CE+FN IG IEFFN QFP+HM+SIANSL SF A+YLSSLL+T VH V+ HPD
Sbjct: 450 GLCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPD 509
Query: 529 WLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 578
WL D+D G+LDYFY+LIA LG +N+VYF YCA RY+YK+G Q +ED N+
Sbjct: 510 WLNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQ-IEDFNE 558
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 238/574 (41%), Positives = 333/574 (58%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L +G +N ++YL ++M +AA ++NI+GG +NF ++ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 FISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPF 134
F+ D+Y GR+KT++FA IA L G + + LTA + LHP +C AK
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFL------------GSVAMDLTAVIHPLHPAQC--AKEIG 127
Query: 135 GQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYX 194
C + Q RPC++PFG DQFD T EG +GI SFFNWY+
Sbjct: 128 SVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFF 187
Query: 195 XXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254
Y+Q +VSW IG IP +LM+ I+F G KLYV V+ GS I
Sbjct: 188 TFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSI 247
Query: 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNEL 314
+V+V A KKRRL P G + Y+ F SKL T QFRFL+K+A+ +++L
Sbjct: 248 TRVIVVAIKKRRLK-PVGPNE----LYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDKL 302
Query: 315 KPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLG 374
DG+PV+ W+LCS+QQVEEVKC+ + QQ T+T+ Q+++ +R LG
Sbjct: 303 NKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLG 362
Query: 375 P-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 433
P FQIP G+ V M+ + +++P YD VLVP LRK T +GGIT LQR+G G+ I S
Sbjct: 363 PGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITS 422
Query: 434 MIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 483
M+V+ +VE+ RR A P +S +S WL PQL+LMG +A +GQ+EF+
Sbjct: 423 MMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFY 482
Query: 484 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 543
KQFP++M+S A SL +C G ASYLS+ L++ VH T WL D++ GRL+YFY
Sbjct: 483 YKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFY 542
Query: 544 FLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQN 577
FL+AG+ LN+ YFL + YRYK + +D +
Sbjct: 543 FLVAGMMTLNLAYFLLVSHWYRYKDVVAKDKDMD 576
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 236/564 (41%), Positives = 319/564 (56%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+N + G NF + A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 FISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPF 134
F+ DTY GR+KT++ A IA L G + LTA +PQLHP C A
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFL------------GSFVILLTAAVPQLHPAACGTAADSI 153
Query: 135 GQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYX 194
C + Q RPC++ FG DQF+ ++ G +GI+SFFNWY+
Sbjct: 154 --CNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFF 211
Query: 195 XXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254
Y+Q +VSW IG IP VLM A ++F G KLYV ++ GS +GI
Sbjct: 212 TFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGI 271
Query: 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNEL 314
QV+ A KKR L P Q ++ PPK + SKL T QFRFL+KAA++ ++L
Sbjct: 272 AQVIAVAIKKRGLK-PAKQ-PWLNLYNYYPPK-YANSKLKYTDQFRFLDKAAILTPEDKL 328
Query: 315 KPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLG 374
+PDG P + W+LC++QQVEEVKC+ +I+QQ T+ V QA++ +R LG
Sbjct: 329 QPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLG 388
Query: 375 PK-FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 433
F IP T V M + +++ YD VLVP +R+IT + GITLLQRIG G+ F+ S
Sbjct: 389 SGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATAS 448
Query: 434 MIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 483
++VAG VE RR A P +S +S WL PQL L G EAF IGQ+EF+
Sbjct: 449 LVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFY 508
Query: 484 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 543
KQFP++M+S A S+ + G +SYL S LI VH T +WL D++ GRLD FY
Sbjct: 509 YKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFY 568
Query: 544 FLIAGLGGLNIVYFLYCARRYRYK 567
F+IAG+ +N YFL +R YRYK
Sbjct: 569 FMIAGILAVNFAYFLVMSRWYRYK 592
|
|
| TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 219/501 (43%), Positives = 308/501 (61%)
Query: 79 TYIGRFKTIT-FASIAAILLAEHFVTKYQ----GK-----GMLTVTLTAWLPQLHPPKCD 128
T I + +T FA I +++ + K+ G GML +T T+ +P L PP C
Sbjct: 63 TLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPC- 121
Query: 129 VAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSF 188
A GQC + Q R CS+PF +DQFD +T+EG +G SF
Sbjct: 122 TADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSF 181
Query: 189 FNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEG 248
F+WYY Y+Q+++SW IGF IPTVL A++L VG + YV V+PEG
Sbjct: 182 FSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEG 241
Query: 249 SIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMI 308
S+FSG+ +VLVAAYKKR+ G +D+H + + +KL LT QFRFLNKA ++
Sbjct: 242 SVFSGVFKVLVAAYKKRKARFTSG-IDYHQPLLETDLQS---NKLVLTDQFRFLNKAVIV 297
Query: 309 VDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMK 368
++N+E G +WR C+++Q+E++K + +++QQ TFTVSQA+K
Sbjct: 298 MNNDEA---GN--EEWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALK 352
Query: 369 MNRHL-GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 427
M+ G + IPP ++ VIS++ IG+WLPFY+TVLV + ITK GGI+LLQ++GIG
Sbjct: 353 MDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGN 412
Query: 428 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
IFSI +M+++G+VER RR L+ + ++SVFWL PQ +LMGF + F I+G EFFNKQ
Sbjct: 413 IFSISTMLISGIVERKRR-DLSLNGV-KMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQV 470
Query: 488 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 547
P +M+SI NSLL+ ASYLSS +++IVH VTAR G WLT+DID +LD FY+ IA
Sbjct: 471 PINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQ-SWLTDDIDKSKLDCFYYFIA 529
Query: 548 GLGGLNIVYFLYCARRYRYKS 568
L LN ++F +CARRYRY++
Sbjct: 530 ALSTLNFIFFFWCARRYRYRN 550
|
|
| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 203/557 (36%), Positives = 309/557 (55%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GGW+A+ YI+ NE+FE+LA++ L+ N VYL+ +Y++ N++NIW G N L G
Sbjct: 19 GGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAG 78
Query: 74 AFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPP 133
AF+SD Y+GRF T+ SIA+ + GM LTA LP L P C P
Sbjct: 79 AFVSDAYLGRFWTLLLGSIASFI------------GMGIFALTAALPSLRPDAC--IDP- 123
Query: 134 FGQCKSANSM-QXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWY 192
C + + Q RPC+I FG DQFD +T +G + +FFNW+
Sbjct: 124 -SNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWW 182
Query: 193 YXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
Y YIQ ++SWVIGF IPT + +I F++G+ Y+ + EGS+F+
Sbjct: 183 YFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFA 242
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHH-GIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDN 311
I +V+ AA KKR++ P + + G D P V K H+ RF +KA+++ +
Sbjct: 243 DIVKVVTAACKKRKVK-PGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVTNP 297
Query: 312 NELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNR 371
NEL DG +WRLCS+QQV+ +KC+ QQ + + QAM+M++
Sbjct: 298 NELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDK 357
Query: 372 HLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 430
GP FQ+P G + ++SMIT+ +W+ Y+ V++P +++IT + +TL RI I +
Sbjct: 358 TFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--VMG 415
Query: 431 ILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP 488
I+ MIVAG E+ RRASA + +S VS+ L PQ L G EAF+ + +EF + P
Sbjct: 416 IICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMP 475
Query: 489 DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIA 547
+HM+++A ++ F S ASY+ +LLI ++ VT + G WL + D++ RL+ ++F+IA
Sbjct: 476 EHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFIIA 534
Query: 548 GLGGLNIVYFLYCARRY 564
G+ N++YF A RY
Sbjct: 535 GIQVANLLYFRLFASRY 551
|
|
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 201/565 (35%), Positives = 308/565 (54%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GG MP+I+ NE FE++A+ GLL N ++YL+++Y N+L +W +NF PLLG
Sbjct: 23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLG 82
Query: 74 AFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPP 133
AF+SD+Y+GRF TI+ AS+++ L GM+ + LTA LPQ+ P CD
Sbjct: 83 AFLSDSYLGRFLTISIASLSSFL------------GMVLLWLTAMLPQVKPSPCDPTAAG 130
Query: 134 FGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWY 192
C S+ + Q RPCS+ FG DQ D + + + + SFF WY
Sbjct: 131 -SHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWY 189
Query: 193 YXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
Y YIQ+ + W IGFG+P VLM+ A +LF++ LYV S+F+
Sbjct: 190 YASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFT 249
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIF--YDPPPKLFVLSKLPLTHQFRFLNKAAMIVD 310
G+ Q +VAAYKKR+L+LP DHH F Y + K P + + RFLNKA +I +
Sbjct: 250 GLAQAIVAAYKKRKLSLP----DHHDSFDCYYHMKDSEI--KAP-SQKLRFLNKACLISN 302
Query: 311 NNE-LKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKM 369
E + DG +N WRLC+ +VEE+K L + SQ +F + QA M
Sbjct: 303 REEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQS-SFQLLQATSM 361
Query: 370 NRHL---GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIG 426
+R L G FQ+P G+ G+ ++I + LW+ YD ++P KI +++ R+G+G
Sbjct: 362 DRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLG 421
Query: 427 MIFSILSMIVAGLVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCEAFNIIGQ 479
+ S L+M ++ +VE RR A + + + +S WL PQ +L G EA IGQ
Sbjct: 422 LFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQ 481
Query: 480 IEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 539
EFF +FP M SIA SL AS L+S+++ V+ +T+R+G W++++I+ G
Sbjct: 482 TEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHY 541
Query: 540 DYFYFLIAGLGGLNIVYFLYCARRY 564
+Y+Y+++A + +N++Y++ C+ Y
Sbjct: 542 NYYYWVLAIMSFINVIYYVICSWSY 566
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 203/565 (35%), Positives = 299/565 (52%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
G WKA +ILGNE ERLA G+ N + YL + +AAN + W G PL+G
Sbjct: 26 GNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIG 85
Query: 74 AFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPP 133
AFI+D Y+GR+ TI FV Y GM +TL+A +P L P C+
Sbjct: 86 AFIADAYLGRYWTIAT-----------FVFIYVS-GMTLLTLSASVPGLKPGNCNA---- 129
Query: 134 FGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWY 192
C NS Q +PC FG DQFD + E +K +SFFNW+
Sbjct: 130 -DTCHP-NSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKK-SSFFNWF 186
Query: 193 YXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
Y +IQ +V W GFG+PTV M+ A+ F G + Y L P GS +
Sbjct: 187 YFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLT 246
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFY--DPPPKLFVLSKLPLTHQFRFLNKAAMIVD 310
I QV+VAA++K + +P+ D +F D + KL T +F +KAA+
Sbjct: 247 RIFQVIVAAFRKISVKVPE---DKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQ 303
Query: 311 NNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMN 370
++ +K DG VN WRLCS+ QVEE+K + T SQ T V Q M+
Sbjct: 304 SDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMD 361
Query: 371 RHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 430
+H+G F+IP ++ + +++ W P YD ++P RK T++E G T LQR+GIG++ S
Sbjct: 362 QHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVS 421
Query: 431 ILSMIVAGLVERGRRASAHLH---PMSQV--SVFWLAPQLILMGFCEAFNIIGQIEFFNK 485
I +MI AG++E R H Q+ S+FW PQ +L+G E F IGQ+EFF
Sbjct: 422 IFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYD 481
Query: 486 QFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFL 545
Q PD M+S+ ++L + +YLS++L+T+V +T ++G P W+ ++++ G LDYF++L
Sbjct: 482 QAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYL 541
Query: 546 IAGLGGLNIVYFLYCARRYRYKSGI 570
+A L LN + +L+ ++RY+YK +
Sbjct: 542 LATLSFLNFLVYLWISKRYKYKKAV 566
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 202/562 (35%), Positives = 297/562 (52%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GG MP+I+ NE FE++A+ GLL N ++YL+ +Y + +L +W TNF PL+G
Sbjct: 25 GGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVG 84
Query: 74 AFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPP 133
AF+SD+Y+GRF TI AS++++L GM+ + LTA LPQ+ P C VA
Sbjct: 85 AFLSDSYLGRFLTIVIASLSSLL------------GMVVLWLTAMLPQVKPSPC-VATAG 131
Query: 134 FGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWY 192
C SA S Q RPCS+ FG DQ D + + + + SFF WY
Sbjct: 132 TN-CSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWY 190
Query: 193 YXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252
Y YIQD + W IGFGIP +LM+ A LF+ LYV + S+F+
Sbjct: 191 YASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFT 250
Query: 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNN 312
G+ QV+ AAY KR LTLP D +Y K P + + RFLNKA I + +
Sbjct: 251 GLAQVVAAAYVKRNLTLPDHH-DSRDCYYRLKDSEL---KAP-SDKLRFLNKACAISNRD 305
Query: 313 E-LKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNR 371
E L DG +NQWRLC+ QVE++K L ++SQ +F + QA M+R
Sbjct: 306 EDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQN-SFQLLQAKSMDR 364
Query: 372 HLGPK--FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 429
L FQIP G+ G+ ++I + W+ YD ++P KI + + R+G+G+
Sbjct: 365 RLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFI 424
Query: 430 SILSMIVAGLVERGRRASAHLHPMSQ-------VSVFWLAPQLILMGFCEAFNIIGQIEF 482
S L+M V+ VE RR +A ++ +S WL PQ +L G EA IGQ EF
Sbjct: 425 SFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEF 484
Query: 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 542
F +FP M SIA SL A+ L+S+++ V +++ G+ W+ ++I+ G DY+
Sbjct: 485 FYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYY 543
Query: 543 YFLIAGLGGLNIVYFLYCARRY 564
Y+++A L +N++Y++ C+ Y
Sbjct: 544 YWVLAILSFVNVIYYVVCSWSY 565
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 198/565 (35%), Positives = 290/565 (51%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
G WKA P+ILGNE ERLA G+ N + YL + H SAA + W G PL+G
Sbjct: 43 GNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIG 102
Query: 74 AFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPP 133
A ++D Y GR+ TI A + I +F+ GM +TL+A +P L P +C
Sbjct: 103 AVLADAYWGRYWTI--ACFSGI----YFI------GMSALTLSASVPALKPAEC------ 144
Query: 134 FGQ-CKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNW 191
G C SA Q +PC FG DQFD T E V+ SFFNW
Sbjct: 145 IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKA-SFFNW 203
Query: 192 YYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIF 251
+Y +IQ++ W +GFGIPTV M AI F G LY +P GS
Sbjct: 204 FYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPI 263
Query: 252 SGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLS---KLPLTHQFRFLNKAAMI 308
+ I QV+VA+++K + +P+ + Y+ K ++ K+ T ++L+KAA+I
Sbjct: 264 TRISQVVVASFRKSSVKVPEDAT----LLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVI 319
Query: 309 VDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMK 368
+ E G N WRLC++ QVEE+K L +Q T V Q
Sbjct: 320 --SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRA 377
Query: 369 MNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMI 428
MN +G FQ+PP +G ++ +W+P YD +VP RK T + G T +QR+GIG+
Sbjct: 378 MNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLF 436
Query: 429 FSILSMIVAGLVERGRRASAHLHPMSQ------VSVFWLAPQLILMGFCEAFNIIGQIEF 482
S+L M A +VE R A+ + + +SV W PQ ++G E F IGQ+EF
Sbjct: 437 VSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEF 496
Query: 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 542
F Q PD M+S+ ++L + +YLSSL++T+V T R+G W+++++++G LDYF
Sbjct: 497 FYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYF 556
Query: 543 YFLIAGLGGLNIVYFLYCARRYRYK 567
++L+AGL +N+ + + A RY+ K
Sbjct: 557 FWLLAGLSLVNMAVYFFSAARYKQK 581
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RX77 | PTR21_ARATH | No assigned EC number | 0.6047 | 0.9625 | 0.9112 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 587 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-54 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-23 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-15 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 0.002 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-54
Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 36/373 (9%)
Query: 137 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196
S + +Q+ + +GL L+++GTGGI+P FG DQFD T D + FF+W+Y +
Sbjct: 24 PPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQD---PRRDGFFSWFYFSI 80
Query: 197 TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY-VLVEPEGSIF-SGI 254
LI + Y+Q +V + +GFG+P V M+ A+++FL+G + Y P GS F I
Sbjct: 81 NAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCI 140
Query: 255 GQVLVAAYKKRRLTLPQGQMDHHGIFY-DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE 313
++ AA K R Q D H +++ +S+ + + +
Sbjct: 141 AFIITAAGKNR---KLQLPKDSHWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWA-- 195
Query: 314 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 373
V ++ ++ ++PIWA I+ +Q T V Q M+R +
Sbjct: 196 -----------LFDQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRII 244
Query: 374 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 433
P F+IPP + + + + + LP D ++ P LR + G+TL QR G+GM I++
Sbjct: 245 YPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVA 300
Query: 434 MIVAGLVE--RGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
+A +VE R R A+A + + W P+L + G A G +EF
Sbjct: 301 NFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVGLA----GALEFAPDAL 356
Query: 488 PDHMKSIANSLLF 500
P M S+ L
Sbjct: 357 PSSMMSLWTLLSA 369
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 104/433 (24%), Positives = 185/433 (42%), Gaps = 86/433 (19%)
Query: 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94
G+ ++YLL N+ +A NI + + + PL+GA I+D+++G+FKTI + S+
Sbjct: 5 GMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVY 64
Query: 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGL 154
++ G +L A HP A S+ +GL L
Sbjct: 65 VV------------GHALASLGAVPSLGHPL------------HDALSL------VGLAL 94
Query: 155 LSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY------TTFTVVILITQTVLV 208
+++GTGGI+PC FG DQF + + FF+++Y + F+ +I V
Sbjct: 95 IALGTGGIKPCVSAFGGDQF---EERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDV 151
Query: 209 Y-IQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRL 267
+ + FG+P +LM A+I+F +G K+Y P G+I S + + +V A KKR
Sbjct: 152 GCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFR 211
Query: 268 TLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLC 327
T P H +L+ AA
Sbjct: 212 T----------------RS----EDWPRLH---WLDWAAPKYL----------------- 231
Query: 328 SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVI 387
I+ + K L++++ ++ + QQG+ QA +M+ +G F I P + +
Sbjct: 232 -IRMIRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAV 289
Query: 388 SMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS 447
+ + + + +P +D V+ PAL K T L+++ +GM+ + L+ VA L++ +
Sbjct: 290 NPLLVLILVPIFDYVVYPALAKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNKINPT 346
Query: 448 AHLHPMSQVSVFW 460
P + + F
Sbjct: 347 LPEEPSASII-FL 358
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 92/506 (18%), Positives = 165/506 (32%), Gaps = 98/506 (19%)
Query: 21 YILGNETFERLATIG---LLANFMVYLLKE-YHMNQTSAANILNIWGGVTNFAPLLGAFI 76
I E +ER + G +L ++ Y L + ++T A + + +G + P++G ++
Sbjct: 25 LIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWL 84
Query: 77 SDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQ 136
+D +G +TI +I ++ H V
Sbjct: 85 ADRVLGTRRTIVLGAI--LMAIGHLVLAISSVSGPG------------------------ 118
Query: 137 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF---DATTDEGVKGINSFFNWYY 193
L +GL L+ +GTG +P + + D D G F +Y
Sbjct: 119 ----------GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-------FTLFY 161
Query: 194 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSG 253
+ LI + + + W +GFG+ V MI +++FL+G++ G
Sbjct: 162 MGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK----------G 211
Query: 254 IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE 313
IG V LP L V+ L N + ++
Sbjct: 212 IGGVPDPNPLSFNFLLP------VLG------GLVVMILAALLTLLLNQNTFSGVLLVIS 259
Query: 314 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 373
+ S + +E + L+ IP++ +I Q G+ A +
Sbjct: 260 ILI-AIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQ 318
Query: 374 GPKFQIPPGT--------VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGI 425
F++PP + + S I LW P+ + +
Sbjct: 319 IFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP------------IKFAL 366
Query: 426 GMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK 485
G+I + L ++ L P VSV+WL +L F E F + K
Sbjct: 367 GLILAGLGFLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK 421
Query: 486 QFPDHMKSIANSLLFCSFGFASYLSS 511
P +KS ++ F + L
Sbjct: 422 LAPPALKSFIMAMWFLTVAAGQTLGG 447
|
Length = 498 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 41/223 (18%)
Query: 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFI 76
+A+ Y++ + +E + G+ A ++YL + + A + + + + P+LG F+
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 77 SDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQ 136
+D +G + + A+L+A G +L + P F
Sbjct: 69 ADKVLGNRMAVM---LGALLMA-------IGHVVLGASEIH--------------PSFLY 104
Query: 137 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196
+ L ++V G GL C + + D D G F+ Y
Sbjct: 105 ------LSLAIIVCGYGLFKSNVS----CLLGELYEPTDPRRDGG-------FSLMYAAG 147
Query: 197 TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239
V +I Y Q+ SW +GFG+ V MI +++FL G +
Sbjct: 148 NVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNR 190
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.91 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.9 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.9 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.89 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.89 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.89 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.88 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.88 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.88 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.88 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.88 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.88 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.88 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.88 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.88 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.88 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.87 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.87 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.87 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.87 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.87 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.87 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.87 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.86 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.86 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.86 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.86 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.86 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.86 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.85 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.85 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.84 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.84 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.84 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.84 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.84 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.83 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.82 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.82 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.81 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.81 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.8 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.8 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.79 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.79 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.79 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.79 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.78 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.78 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.77 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.77 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.77 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.77 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.77 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.73 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.73 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.73 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.67 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.67 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.65 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.65 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.65 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.63 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.62 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.62 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.62 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.61 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.59 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.59 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.57 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.57 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.56 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.54 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.52 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.5 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.5 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.5 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.44 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.36 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.31 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.29 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.28 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.28 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.26 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.24 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.22 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.22 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.21 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.21 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.21 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.21 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.19 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.18 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.17 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.15 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.15 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.15 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.14 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.14 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.12 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.12 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.12 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.11 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.1 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.1 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.09 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.08 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.05 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.04 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.04 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.03 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.03 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.02 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.02 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.01 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.0 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.96 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.96 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.96 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.93 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.9 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.9 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.89 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.89 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.88 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.88 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.84 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.82 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.82 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.81 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.81 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.79 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.78 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.77 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.76 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.76 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.75 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.74 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.74 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.72 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.72 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.7 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.68 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.66 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.63 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.62 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.62 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.59 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.58 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.55 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.55 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.51 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.48 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.48 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.47 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.47 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.45 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.44 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.42 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.4 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.35 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.33 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.29 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.28 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.22 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.19 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.19 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.16 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.11 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.09 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.09 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.04 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.99 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.89 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.82 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.81 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.78 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.73 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.69 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.65 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.58 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.54 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.5 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.49 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.48 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.42 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.34 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.27 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.1 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.9 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.68 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.58 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.57 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.55 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.45 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.39 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.33 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.66 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.49 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.47 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.47 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.32 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.96 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 94.94 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.22 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.36 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.25 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 91.88 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 86.15 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 85.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 84.44 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 83.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 80.81 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 80.64 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=480.23 Aligned_cols=535 Identities=45% Similarity=0.786 Sum_probs=486.0
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHH
Q 007862 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (587)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 91 (587)
+.+.|++++++++++.+|++++|++..++..|++.++|.+...+...++.|.+...+.++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 92 IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
++..+ |+.++.+++.+|.+.++.| ..++.-..|+.++..+...++.++.+.++|+|+.+|+..++.+
T Consensus 112 ~i~~~------------G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGa 178 (571)
T KOG1237|consen 112 LISLL------------GLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGA 178 (571)
T ss_pred HHHHH------------HHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcc
Confidence 99999 9999999999999999887 3333345799999999999999999999999999999999999
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChh
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIF 251 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
||+|+..+++++.+.++|+|+|+..++|..++.++..|++++.+|.+.|.++.+.+.+++++++...+.|+.++|.++|+
T Consensus 179 dQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~ 258 (571)
T KOG1237|consen 179 DQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPK 258 (571)
T ss_pred cccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCch
Confidence 99998777788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCcccccccee
Q 007862 252 SGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQ 331 (587)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 331 (587)
..+.+++..+.++++...+. ++... ...........+.++++++|++.+..+... .++...++|+.|+.++
T Consensus 259 t~i~~Vlvaa~~k~~~~~~~---~~~~~----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~ 329 (571)
T KOG1237|consen 259 TRIGQVLVAAAFKRKAVVSL---DPEEL----YYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQ 329 (571)
T ss_pred hHHHHHHHHHHHHHhccCCC---cchhc----cccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCcee
Confidence 99999999999999988776 43321 011111122344678899999988776333 5566778999999999
Q ss_pred eehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhh
Q 007862 332 VEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 411 (587)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~ 411 (587)
+||.|++++.+|+|...+.+++++.|+.++.+.|...+|+..++.+++|++.+.....+..+++.|++|++..|+.+|++
T Consensus 330 Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t 409 (571)
T KOG1237|consen 330 VEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLT 409 (571)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhc
Confidence 99999999999999999999999999999999999999999985599999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--CCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCc
Q 007862 412 KHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHL--HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD 489 (587)
Q Consensus 412 ~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~--~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~ 489 (587)
+++.+++.++++.+|+++..+++...+..|..|.+.+.+ ....++|++|++|+|+++|++|.+.....+|+.++++|+
T Consensus 410 ~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~ 489 (571)
T KOG1237|consen 410 GNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPE 489 (571)
T ss_pred CCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCH
Confidence 988788999999999999999999999999988877654 224679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007862 490 HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 568 (587)
Q Consensus 490 ~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~ 568 (587)
+||+.+++++.+...+|++++.++..++...+.. ..+|+. +++|.++++++||+++....+....+..+.+++++++
T Consensus 490 sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~ 567 (571)
T KOG1237|consen 490 SMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKD 567 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecc
Confidence 9999999999999999999999999998876533 458999 9999999999999999999999999999998887765
Q ss_pred Cc
Q 007862 569 GI 570 (587)
Q Consensus 569 ~~ 570 (587)
.+
T Consensus 568 ~~ 569 (571)
T KOG1237|consen 568 DK 569 (571)
T ss_pred cc
Confidence 43
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=341.71 Aligned_cols=465 Identities=20% Similarity=0.285 Sum_probs=351.7
Q ss_pred ccccccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC----CChhhHHHHHHHHHHHHHHHhhhhHHHhhccc
Q 007862 6 KQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH----MNQTSAANILNIWGGVTNFAPLLGAFISDTYI 81 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~----~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~ 81 (587)
++.+++.-++||.++.++.+|+.||++|||+...+..|+..+++ +|++++..+.+++....++.+++|||++||++
T Consensus 10 ~~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L 89 (498)
T COG3104 10 TTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL 89 (498)
T ss_pred cccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666899999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHhhhcccccccccceEEEeeec-cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccc
Q 007862 82 GRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTA-WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTG 160 (587)
Q Consensus 82 Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g 160 (587)
|+||++..+.+++++ |.++++.+. . ....++++..++++|+|
T Consensus 90 G~~~tI~lGail~~i------------Gh~~L~~~~~~-------------------------~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 90 GTRRTIVLGAILMAI------------GHLVLAISSVS-------------------------GPGGLYIGLALIIVGTG 132 (498)
T ss_pred chhHHHHHHHHHHHH------------HHHHHhccccc-------------------------cccHHHHHHHHHHhccc
Confidence 999999999999999 999888763 1 34569999999999999
Q ss_pred cccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007862 161 GIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
+++|++.++++|++|+++| +|..+|+++|++.|+|++++|.+.+++.+.+||...|.++++-+.++++.++.+++.
T Consensus 133 l~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 133 LFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred cccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999998764 399999999999999999999999999999999999999999999999999988876
Q ss_pred eeeeCC--CCChhh------hHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhH-HHHHhhhccC
Q 007862 241 YVLVEP--EGSIFS------GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRF-LNKAAMIVDN 311 (587)
Q Consensus 241 ~~~~~~--~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 311 (587)
+..... +..+.. ....++....... .. . +...+..+. +....+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~---------------------~l~~~~~~~~~~~~~i~~~~ 264 (498)
T COG3104 209 VKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL-LT--L---------------------LLNQNTFSGVLLVISILIAI 264 (498)
T ss_pred hcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH-HH--H---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 654332 111110 0000000000000 00 0 000000000 0000000000
Q ss_pred CCCCCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeee-ccccccCCCccccCcccccccchh
Q 007862 312 NELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA-MKMNRHLGPKFQIPPGTVGVISMI 390 (587)
Q Consensus 312 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~i~~i 390 (587)
... ....+| .+.. +|+|+++..+++++...+||+.+.|+++.+..+. ...+++.. ++++|+++++++|++
T Consensus 265 ~~~----~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~ 335 (498)
T COG3104 265 IYF----AEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPF 335 (498)
T ss_pred HHH----HHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHH
Confidence 000 000111 1112 6789999999999999999999999999654443 44555534 689999999999999
Q ss_pred hhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHH
Q 007862 391 TIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGF 470 (587)
Q Consensus 391 ~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ 470 (587)
.++++.|+.+++..|+.++. +.++...++..|+++++.+++.+........ +. ....|.+|++++|+++++
T Consensus 336 ~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~--~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 336 FIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIWFG---GP--SGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhhc---CC--CCCcCHHHHHHHHHHHHH
Confidence 99999999999977766553 2357888999999999999988876633211 11 245799999999999999
Q ss_pred HHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHH
Q 007862 471 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLG 550 (587)
Q Consensus 471 ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~ 550 (587)
||.+.+|...+++++.+|+++++.++|+|.+.+..|+.++..+.+.... +.. ..+.......|+.++...
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~~---------~~~~~~~~~~F~~~g~v~ 476 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TDP---------AYTAFIEGRVFGTIGVVA 476 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cch---------hhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999877663221 000 001112345677777777
Q ss_pred HHHHHHHHHHHhh
Q 007862 551 GLNIVYFLYCARR 563 (587)
Q Consensus 551 ~l~~v~~~~~~~~ 563 (587)
++..+..+...++
T Consensus 477 i~~~~~~~~~~~~ 489 (498)
T COG3104 477 IVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHHHhhHH
Confidence 7766665555544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.27 Aligned_cols=457 Identities=12% Similarity=0.178 Sum_probs=332.1
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
++++|||.++.++..+++||+++|++..+++.|+++++|+++++++++.+.+....++.++++|+++||++||||+++++
T Consensus 8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999955999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.+++.+ |.+.++++.. ....++++|.++++|.|...|+..+++
T Consensus 88 ~~~~~~------------g~~~~~~~~~-------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li 130 (489)
T PRK10207 88 AIVLAI------------GYFMTGMSLL-------------------------KPDLIFIALGTIAVGNGLFKANPASLL 130 (489)
T ss_pred HHHHHH------------HHHHHHHhcc-------------------------chhHHHHHHHHHHhccccccCCHHHHH
Confidence 999999 8888777542 223466899999999999999999999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeee--CCCC
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV--EPEG 248 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ 248 (587)
+|++|+++ ++|.+.++++|+..|+|.++||.+++++.++.|||++|+++.+.++++++.+...++.+++. +|++
T Consensus 131 ~~~~p~~~----~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (489)
T PRK10207 131 SKCYPPKD----PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDH 206 (489)
T ss_pred HHhcCCCc----hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCc
Confidence 99998754 34788999999999999999999999999999999999998776666666666665554332 2222
Q ss_pred ChhhhHHHHHHH-------HHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHH-HH------HhhhccCCCC
Q 007862 249 SIFSGIGQVLVA-------AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL-NK------AAMIVDNNEL 314 (587)
Q Consensus 249 ~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~------~~~~~~~~~~ 314 (587)
++. +....+.. ...-.. ..+ . .+..... .. .....++
T Consensus 207 ~~~-d~~~~~l~~~~~~~~~~~~~~--~~~----~-------------------~~~~~~~~~~~~~i~~~~f~~~~--- 257 (489)
T PRK10207 207 KPM-SFSKLLLVLLGSVVMIFVCAW--LMH----N-------------------VEVANLVLIVLSIVVTIIFFREA--- 257 (489)
T ss_pred cch-hhhhHHHHHHHHHHHHHHHHH--HHh----h-------------------hhHHHHHHHHHHHHHHHHHHHHH---
Confidence 221 11110000 000000 000 0 0000000 00 0000000
Q ss_pred CCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeec-cccccCCCccccCcccccccchhhhh
Q 007862 315 KPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIG 393 (587)
Q Consensus 315 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~i~~~ 393 (587)
.+.+ ..++++.+..+.++.....+|..+.|..+....+.. ..+.... ++.++++.++++|++.++
T Consensus 258 ------------~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~ii 323 (489)
T PRK10207 258 ------------FKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVV 323 (489)
T ss_pred ------------hcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHH
Confidence 0001 123445555666677788899999888665433333 3455444 677888999999999999
Q ss_pred hhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHH
Q 007862 394 LWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEA 473 (587)
Q Consensus 394 l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~ 473 (587)
+..|+.+++ .+|+++|+..++...++..|+++.+++++.+....... ... ....+.+|+++.+++.++||.
T Consensus 324 i~~pl~~~l----~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--~~~~s~~~~i~~~~l~g~Ge~ 394 (489)
T PRK10207 324 VASPILAGI----YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--QGLTSPWFIVLVYLFQSLGEL 394 (489)
T ss_pred HHHHHHHHH----HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC--CCccCHHHHHHHHHHHHHHHH
Confidence 999987665 88887776667888999999999998887654322110 011 124678899999999999999
Q ss_pred HHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHH
Q 007862 474 FNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLN 553 (587)
Q Consensus 474 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~ 553 (587)
+..|+.++++++.+|++++|.++|++++.+++|+.++..+........ ...++. . ....+..+|..+++.+++.
T Consensus 395 ~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~~~~~~---~-~~~~~~~~f~~~~~~~~~~ 468 (489)
T PRK10207 395 FISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD--NITDPL---E-TLPVYTNVFGKIGLVTLGV 468 (489)
T ss_pred HHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccch---h-hhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876553110 000110 0 0123567788888888877
Q ss_pred HHHHHHHHhhhcc
Q 007862 554 IVYFLYCARRYRY 566 (587)
Q Consensus 554 ~v~~~~~~~~~~~ 566 (587)
.++++++.|+.++
T Consensus 469 ~v~~~~~~~~~~~ 481 (489)
T PRK10207 469 AVVMALMVPWLNR 481 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=342.03 Aligned_cols=453 Identities=15% Similarity=0.184 Sum_probs=334.5
Q ss_pred cccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhh
Q 007862 9 DQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE--YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT 86 (587)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~ 86 (587)
|+++.++||.++.+...+++||+++|++.++++.|++++ +|+|..+++++.+.+.++..++++++|+++||++||||+
T Consensus 2 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 2 EKTFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT 81 (475)
T ss_pred CCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence 345568999999999999999999999999999999988 999999999999999999999999999999994599999
Q ss_pred hhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccc
Q 007862 87 ITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCS 166 (587)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 166 (587)
+.++.+++.+ +.++++++. +...++.+|.+.|+|.|+..|+.
T Consensus 82 l~~~~~~~~~------------g~~~~~~~~--------------------------~~~~~~~~~~l~g~g~g~~~~~~ 123 (475)
T TIGR00924 82 MVLGGIVLML------------GHFMLAMSI--------------------------YPDLIFYGLGTIAVGSGLFKANP 123 (475)
T ss_pred HHHHHHHHHH------------HHHHHHhcc--------------------------cHhHHHHHHHHHHhccccccCCH
Confidence 9999999999 887777654 45678889999999999999999
Q ss_pred cccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCC
Q 007862 167 IPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 246 (587)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
.++++|++|++++ ++|+++++++|+..|+|.++||.+++++.++.||++.|.++++.++++++.++..++.+++.++
T Consensus 124 ~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 124 SSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999986432 3488899999999999999999999999999999999999887777776666665555433222
Q ss_pred CCChhhhHH----H-------HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHH----HHhhhccC
Q 007862 247 EGSIFSGIG----Q-------VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN----KAAMIVDN 311 (587)
Q Consensus 247 ~~~~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~ 311 (587)
++++..... . .+....+.... ..+ ....+... -+......
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~~~~~~~~~~~~~~~ 255 (475)
T TIGR00924 201 VPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHH------------------------VVIANILLMTVTLAVIIFFF 255 (475)
T ss_pred CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhc------------------------cHHHHHHHHHHHHHHHHHHH
Confidence 222111000 0 00000000000 000 00000000 00000000
Q ss_pred CCCCCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccce-eeeeeccccccCCCccccCcccccccchh
Q 007862 312 NELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTF-TVSQAMKMNRHLGPKFQIPPGTVGVISMI 390 (587)
Q Consensus 312 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~i~~i 390 (587)
+.. ..| +.++ .++++....+++++....+|..+.|..+. ..++...++...+ ++++|++.++++|.+
T Consensus 256 ~~~------~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~ 323 (475)
T TIGR00924 256 RLA------FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPF 323 (475)
T ss_pred HHH------Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHH
Confidence 000 000 0011 22344445677888889999999998884 4455555666665 788999999999999
Q ss_pred hhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHH
Q 007862 391 TIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGF 470 (587)
Q Consensus 391 ~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ 470 (587)
.++++.|+.+++ ..++.+|+.+++...++..|+++.++++..+++.... .+. ....+++|+++++++.++
T Consensus 324 ~iil~~p~~~~~----~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~--~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 324 WVVVGSPVLAMI----WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA--GGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHHHHHHHH----HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--CCccCHHHHHHHHHHHHH
Confidence 999999997765 5555555444577778999999999999887765221 111 124799999999999999
Q ss_pred HHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHH
Q 007862 471 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLG 550 (587)
Q Consensus 471 ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~ 550 (587)
||.+..|..+++.++.+|++.||+++|++.+...+|+.+++.+........ +....|..+++++
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 457 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVT 457 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887654321 2345667777777
Q ss_pred HHHHHHHHHHHhhhc
Q 007862 551 GLNIVYFLYCARRYR 565 (587)
Q Consensus 551 ~l~~v~~~~~~~~~~ 565 (587)
++..+++++..|+.+
T Consensus 458 ~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 458 LLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666665543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=322.70 Aligned_cols=455 Identities=15% Similarity=0.202 Sum_probs=325.4
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
|+.+|||.++.+...+++||+++|++...++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||++.++
T Consensus 3 ~~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 3 KHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999944999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.++..+ |.++++.... +...++.+..+..+|.|...|+..+++
T Consensus 83 ~il~~l------------g~lll~~~~~-------------------------~~~~~~l~l~li~iG~G~~~~~~~alv 125 (493)
T PRK15462 83 ALLMAI------------GHVVLGASEI-------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLL 125 (493)
T ss_pred HHHHHH------------HHHHHHHhhc-------------------------chhHHHHHHHHHHHhcccccccHHHHH
Confidence 999998 7654433210 123355666677789999999999999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCC-CCC
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP-EGS 249 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (587)
+|++|+++ ++|.++++++|+..|+|+.++|.+.+++.+++||++.|.++++.++++++.++..++.+.+... .+.
T Consensus 126 ~elfp~~~----~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~ 201 (493)
T PRK15462 126 GELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKK 201 (493)
T ss_pred HHHCCCCC----ccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Confidence 99998754 3589999999999999999999999999999999999999888888887777776655433211 111
Q ss_pred hhhh--HHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHH------Hh-hhccCCCCCCCCCC
Q 007862 250 IFSG--IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNK------AA-MIVDNNELKPDGTP 320 (587)
Q Consensus 250 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~-~~~~~~~~~~~~~~ 320 (587)
+... ..........---...+. +. . ... ..+....+.. .. +...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----~---~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 254 (493)
T PRK15462 202 VLRATNFLLPNWGWLLVLLVATPA--------LI-----T---VLF-WKEWSVYALIVATIIGLGVLAKI---------- 254 (493)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHH--------HH-----H---HHH-HHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1110 000000000000000000 00 0 000 0000000000 00 0000
Q ss_pred CCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccce-eeeeeccccccCCCccccCcccccccchhhhhhhhhch
Q 007862 321 VNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTF-TVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFY 399 (587)
Q Consensus 321 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~ 399 (587)
. ......+|+|++...++++...+.||..+.|.++. ..+...++|++.. ++++|+++++++|++.++++.|+.
T Consensus 255 ----~-~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~ 328 (493)
T PRK15462 255 ----Y-RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFL 328 (493)
T ss_pred ----H-HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHH
Confidence 0 00012356888888888999999999999999884 4555577888877 899999999999999999999997
Q ss_pred hhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhh
Q 007862 400 DTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQ 479 (587)
Q Consensus 400 ~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~ 479 (587)
.++ ..|..+|++.++...++..|+++.+++++++....... +.+ ...+.+|++..++++++||.+..|..
T Consensus 329 a~l----w~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~--~~~s~~wl~~~~~~~t~gEl~~sPvg 398 (493)
T PRK15462 329 AWV----VKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY--GHSSLPLMVLGLAVMGFAELFIDPVA 398 (493)
T ss_pred HHH----HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC--CCcCHHHHHHHHHHHHHHHHHHChHH
Confidence 776 56654444346888899999999999998876654321 111 24789999999999999999999999
Q ss_pred HHHHHhhCCchhhHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHH
Q 007862 480 IEFFNKQFPDHMKSIANSLLFCSF-GFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLN 553 (587)
Q Consensus 480 ~~~~~~~~P~~~rg~~~gl~~~~~-~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~ 553 (587)
.+.+.+.+|++.||+++|.+++.. .+|+.+++.+.......+.....+ ..+ ....+..+|..++.+.++.
T Consensus 399 ls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 399 MSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGA---INY-SINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc---ccc-hhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999998854 788888877766553211000000 000 1124566777777666655
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=322.71 Aligned_cols=459 Identities=15% Similarity=0.199 Sum_probs=326.6
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
.+++|.++.++..+++||+++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||++++++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999998888888888999999994499999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.++++++.. +...++++|.++++|.|...|+..++++|
T Consensus 97 ~~~i------------g~~l~~~~~~-------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~ 139 (500)
T PRK09584 97 VLAI------------GYALVAWSGH-------------------------DAGIVYMGMATIAVGNGLFKANPSSLLST 139 (500)
T ss_pred HHHH------------HHHHHHHhcc-------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHH
Confidence 9999 8776666431 34567788999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeee--CCCCCh
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV--EPEGSI 250 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 250 (587)
++|+++ ++|.++++++|+..|+|+.++|.+++++.+++|||+.|++.++.++++++.+++.++.+++. ++++++
T Consensus 140 ~f~~~~----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~ 215 (500)
T PRK09584 140 CYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEP 215 (500)
T ss_pred hcCCCc----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccc
Confidence 998643 34667899999999999999999999999999999999998887777766655555443332 122211
Q ss_pred hhh--H----HHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCcc
Q 007862 251 FSG--I----GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQW 324 (587)
Q Consensus 251 ~~~--~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w 324 (587)
... . ............. ... + + .....-.......... .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~----~----------~-------~~~~~~~~~~~~~~~~------------~~ 261 (500)
T PRK09584 216 INYRKLLLTIVGVVALIAIATWL-LHN----Q----------E-------IARMALGVVALGIVVI------------FG 261 (500)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-Hhc----c----------h-------HHHHHHHHHHHHHHHH------------HH
Confidence 110 0 0000000000000 000 0 0 0000000000000000 00
Q ss_pred ccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeec-cccccCCCccccCcccccccchhhhhhhhhchhhhh
Q 007862 325 RLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVL 403 (587)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~ 403 (587)
+........++++.+..+.++...+.||+.+.|.++.+..+.. ..+.... ++.+++++++++|.+.++++.|+.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~- 339 (500)
T PRK09584 262 KEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI- 339 (500)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH-
Confidence 0000011234555556677778889999999999987655432 3444444 677889999999999999999998776
Q ss_pred HHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHH
Q 007862 404 VPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 483 (587)
Q Consensus 404 ~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~ 483 (587)
.+|+++|. +..+++..|+++.+++++........ +++ ...++.+|++++++++++||++..|...+++
T Consensus 340 ---~~~l~~r~---~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~ 407 (500)
T PRK09584 340 ---YNKMGDRL---PMPHKFAIGMVLCSGAFLVLPLGAKF----AND--AGIVSVNWLIASYGLQSIGELMISGLGLAMV 407 (500)
T ss_pred ---HHHhCcCC---CcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--CCccCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66665553 67789999999999999887765431 111 1246788999999999999999999999999
Q ss_pred HhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 484 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 484 ~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
.+.+|+++||+++|++.+...+|+.+++.+........ ...++. ...+++..+|...++++++..++.+...++
T Consensus 408 ~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~--~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 481 (500)
T PRK09584 408 AQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD--NVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPK 481 (500)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887765332100 000010 011236677888887777666666666665
Q ss_pred hcc
Q 007862 564 YRY 566 (587)
Q Consensus 564 ~~~ 566 (587)
.++
T Consensus 482 ~~k 484 (500)
T PRK09584 482 LNR 484 (500)
T ss_pred HHH
Confidence 544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=283.94 Aligned_cols=332 Identities=27% Similarity=0.523 Sum_probs=269.8
Q ss_pred HHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccce
Q 007862 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGM 110 (587)
Q Consensus 31 ~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~ 110 (587)
++||++..++..|+++.+|++++++..+.+.+.....+.++++|+++|+++||+|++.++.+++.+ |.
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~l------------G~ 68 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVV------------GH 68 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HH
Confidence 478999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred EEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhh
Q 007862 111 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (587)
+++++++..+.. ...+....+.+..+.++|+|+++|+..++.+|++++++ +++|.++|+
T Consensus 69 ~llai~a~~~~~------------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~ 127 (654)
T TIGR00926 69 ALLSFGAIPSSG------------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFS 127 (654)
T ss_pred HHHHhccCcccc------------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHH
Confidence 777765421100 01134557889999999999999999999999998643 356999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccc-------cchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHH
Q 007862 191 WYYTTFTVVILITQTVLVYIQDS-------VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 263 (587)
Q Consensus 191 ~~~~~~~~g~~i~~~~~~~i~~~-------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 263 (587)
|+|+++|+|+++++++.+++.+. .+|..+|.++++.++++++++...+++++..+|.+++...+.+++..+.+
T Consensus 128 ~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~ 207 (654)
T TIGR00926 128 FFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR 207 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999844 36999999999999999999998888887777777766667777777666
Q ss_pred hccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhH
Q 007862 264 KRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIP 343 (587)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 343 (587)
+++..... + ....|+|++.... ..+.++++|+++++++
T Consensus 208 ~~~~~~~~---~---------------------~~~~~ld~a~~~~------------------~~~~V~evkrll~il~ 245 (654)
T TIGR00926 208 KRFSTRSE---H---------------------WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLV 245 (654)
T ss_pred HhhccCCc---c---------------------cchhHHHHhcccc------------------ccchHHHHHHHHHHHH
Confidence 54322111 0 0123444432211 1234677899999999
Q ss_pred HHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHH
Q 007862 344 IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI 423 (587)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i 423 (587)
++.....+|..+.|+.+.+..|...++...+ ++.+|+.+++.+|.+.++++.|++++.+.|..+|.+ ...++..++
T Consensus 246 l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~ 321 (654)
T TIGR00926 246 LFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKM 321 (654)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHH
Confidence 9999999999999999988888877777665 678899999999999999999999877777766543 235889999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007862 424 GIGMIFSILSMIVAGLVE 441 (587)
Q Consensus 424 ~~G~i~~~~s~~~~~~~~ 441 (587)
.+|+++.+++++++...+
T Consensus 322 ~iG~~la~la~~va~~ve 339 (654)
T TIGR00926 322 AVGGLLAALSFFVAALVQ 339 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887744
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=221.01 Aligned_cols=380 Identities=14% Similarity=0.040 Sum_probs=248.2
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
+..+.+|.+..+....++..++.....+.++.|+.+++|.|..+.+++.+++.++..+++++.|+++|| +||||++.++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~ 87 (399)
T PRK05122 9 SGLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFG 87 (399)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHH
Confidence 455666777778888888888888888899999999999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.+++.+ +.+.+.++.... .....+...+++.|+++|+|.+...++....+
T Consensus 88 ~~~~~~------------~~~~~~~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (399)
T PRK05122 88 LCGCAL------------SGLLYLLAGLLA------------------AWPVLSLLLLLLGRLLLGIGESLAGTGSILWG 137 (399)
T ss_pred HHHHHH------------HHHHHHHhhhhh------------------ccchhHHHHHHHHHHHHHhhHHhhcchHHHHH
Confidence 988776 544333322100 00011466789999999999999999999999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCCh
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSI 250 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
.|.+|+++ |+++++++....++|..+++.+++++.+..||++.|++..+..++.+... ++ .++.++++++
T Consensus 138 ~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 207 (399)
T PRK05122 138 IGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGE 207 (399)
T ss_pred HhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCcc
Confidence 99998755 99999999999999999999999999999999999887665544332221 11 0000000000
Q ss_pred hhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce
Q 007862 251 FSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ 330 (587)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 330 (587)
+ .++.
T Consensus 208 --------------------~---------------------------~~~~---------------------------- 212 (399)
T PRK05122 208 --------------------R---------------------------LPFR---------------------------- 212 (399)
T ss_pred --------------------c---------------------------hhHH----------------------------
Confidence 0 0000
Q ss_pred eeehhhhhhhhhH-HHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhh
Q 007862 331 QVEEVKCLIKIIP-IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 409 (587)
Q Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r 409 (587)
+..|..+.... .......+.........+.. +.... ..+.......++.++..++.+++ .||
T Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l----~~r 275 (399)
T PRK05122 213 --RVLGRVWPYGMGLALASIGFGTIATFITLYYA------ARGWD-----GAALALTLFGVAFVGARLLFGNL----INR 275 (399)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hcccc-----cchHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 00011111000 01111111111111111110 00000 01112222333334444443333 555
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCc
Q 007862 410 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD 489 (587)
Q Consensus 410 ~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~ 489 (587)
++ +++.+..+.++.+++.+..... .+.+.+++..++.+++.+...+.......+.+|+
T Consensus 276 ~~-------~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 333 (399)
T PRK05122 276 LG-------GLRVAIVSLLVEILGLLLLWLA---------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP 333 (399)
T ss_pred hc-------cHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH
Confidence 43 3345556666666665554432 2444556667888999998888888888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007862 490 HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 490 ~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~ 561 (587)
+.||+++|+++....+|..+++.+.+.+.+.. ++...|...+++.+++.+..++..
T Consensus 334 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 334 QNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888888776422 356677777777777766655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=225.69 Aligned_cols=399 Identities=12% Similarity=-0.016 Sum_probs=246.5
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|....++...++..++.......++.+ .++++.+..+.+++.+...++..++.++.|+++|| +||||++.++.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGL 94 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHH
Confidence 344455555666666665555555555 56788899999999999999999999999999999 5999999998877766
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+++....... ..+++.+++.|++.|++.+...++..+.+.|.+|+
T Consensus 95 ------------~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 141 (417)
T PRK10489 95 ------------GFIGLALNAFLP---------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR 141 (417)
T ss_pred ------------HHHHHHHHHHcC---------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH
Confidence 554433211000 01567788899999999998889999999999987
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
++ |+++.++.+...++|..+||.+++++.+..+|++.|.+..+..++++++.+..+ +. ++++...
T Consensus 142 ~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~~~~----- 206 (417)
T PRK10489 142 EN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLP-AL---PPPPQPR----- 206 (417)
T ss_pred HH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CC---CCCCccc-----
Confidence 54 899999999999999999999999999888999999887776665554433221 11 1100000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+ ++ ..+..+.... ....+
T Consensus 207 --------------~---~~---------------------~~~~~~~~~~------------------------~~~~~ 224 (417)
T PRK10489 207 --------------E---HP---------------------LRSLLAGFRF------------------------LLASP 224 (417)
T ss_pred --------------c---cc---------------------hHHHHHHHHH------------------------HHcCh
Confidence 0 00 0000000000 00001
Q ss_pred hhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccc-cCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 337 CLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
.+...+................+. ......+ .+ ...+.+.....++.++...+.+++ .+| .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~g--~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~----~- 286 (417)
T PRK10489 225 VVGGIALLGGLLTMASAVRVLYPA-------LADEVWQ--MGAAQIGLLYAAVPLGAALGALTSGWL----AHS----A- 286 (417)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhHH-------HHHhccC--CChhHhHHHHHHHHHHHHHHHHHHHHh----hhc----c-
Confidence 111111110110001111111111 1111111 00 012233333444444444443332 332 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
++.+.+..+.++.+++++.+... .+.+......++.+++.+...+...++..+..|++.||++
T Consensus 287 --~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T PRK10489 287 --RPGLLMLLSTLGSFLAVGLFGLM---------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRI 349 (417)
T ss_pred --CcchHHHHHHHHHHHHHHHHHcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 22344556666666665554422 2334455566777888888788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 007862 496 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 575 (587)
Q Consensus 496 ~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~ 575 (587)
+|+++..+.+|..+++.+.+.+.+.. +....+...+++.++..++.....+++|++++|+.+++
T Consensus 350 ~g~~~~~~~~g~~~g~~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 350 NGLWTAQNVTGDAIGAALLGGLGAMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHh----------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 99999999999999999999887532 23345666666666666666666677777777776666
Q ss_pred ccc
Q 007862 576 QND 578 (587)
Q Consensus 576 ~~~ 578 (587)
..|
T Consensus 414 ~~~ 416 (417)
T PRK10489 414 ASD 416 (417)
T ss_pred CCC
Confidence 443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=222.78 Aligned_cols=375 Identities=12% Similarity=0.057 Sum_probs=241.6
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
.++|...+.+....++.....+. ...+.+.+.+++|.|+++.+++.+.+.++..+++++.|+++|| +||||++.++.+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 82 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFV 82 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHH
Confidence 34565555555555554444443 3333456788999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.+.++++. +++.++++|+++|++.+...|...+++.|
T Consensus 83 ~~~~------------~~~~~~~~~--------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~ 124 (390)
T PRK03545 83 LFIA------------SHVLSALAW--------------------------NFTVLLISRIGIAFAHAIFWSITASLAIR 124 (390)
T ss_pred HHHH------------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 877766655 77889999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhh
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 252 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
++|+++ |+++++++....++|..++|.+++.+.+..|||+.|++.+++.++..++.+...|+.++ +++++.+
T Consensus 125 ~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 196 (390)
T PRK03545 125 VAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--EHSGSLK 196 (390)
T ss_pred hCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCcchHH
Confidence 999755 99999999999999999999999999998999999999887766554443332221100 0000000
Q ss_pred hHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceee
Q 007862 253 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQV 332 (587)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 332 (587)
+.....
T Consensus 197 --------------------------------------------------~~~~~~------------------------ 202 (390)
T PRK03545 197 --------------------------------------------------SLPLLF------------------------ 202 (390)
T ss_pred --------------------------------------------------HHHHHH------------------------
Confidence 000000
Q ss_pred ehhhhhhhhh-HHHHHHHHHHhhhccccceeeeeeccccccCCCcccc-CcccccccchhhhhhhhhchhhhhHHHhhhh
Q 007862 333 EEVKCLIKII-PIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKI 410 (587)
Q Consensus 333 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~ 410 (587)
. .+.++... ..+......+........+.. ...+ .+. ..+.......+..++...+.+++ .||.
T Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~g--~s~~~~~~~~~~~~~~~~~g~~~~g~l----~dr~ 268 (390)
T PRK03545 203 R-RPALVSLYLLTVVVVTAHFTAYSYIEPFVQ-------QVAG--LSENFATLLLLLFGGAGIIGSVLFSRL----GNRH 268 (390)
T ss_pred h-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcC--CCccHHHHHHHHHHHHHHHHHHHHHHH----hhcc
Confidence 0 01111111 111111111111111111111 1111 000 01222222333444444433332 4443
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCch
Q 007862 411 TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH 490 (587)
Q Consensus 411 ~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~ 490 (587)
+ + +.+..+..+..++....... ..+.+.++...++.+++.....+.......+..|+
T Consensus 269 ~-------~-~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~- 325 (390)
T PRK03545 269 P-------S-GFLLIAIALLLVCLLLLLPA--------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD- 325 (390)
T ss_pred c-------h-hHHHHHHHHHHHHHHHHHHH--------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-
Confidence 2 1 23444554444444333221 12445556667788888888888888888888875
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007862 491 MKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 562 (587)
Q Consensus 491 ~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~ 562 (587)
.|++++|+.+....+|..+|+.+.+.+.+.. ++...|...+.+.+++.+.++...+
T Consensus 326 ~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 326 ATDVAMALFSGIFNIGIGAGALLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999887532 4556778888888888777766654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-25 Score=234.64 Aligned_cols=367 Identities=35% Similarity=0.575 Sum_probs=242.2
Q ss_pred hhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccc
Q 007862 84 FKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIR 163 (587)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 163 (587)
.|++.++.+++++ |.+++.+++..+. .+++.+.+.+++++.++++|+|+.+
T Consensus 1 yktI~~g~~~~~~------------G~~ll~l~~~~~~-----------------~~~~~~~~~~~~gL~lia~G~G~~K 51 (372)
T PF00854_consen 1 YKTILLGSIVYLL------------GHVLLTLSAIPPS-----------------LPSGIQLGLFYIGLALIAVGTGGIK 51 (372)
T ss_dssp HHHHHHHHHHHHH------------HHHH--HHHTSSS-----------------C------CHHHHHHHHHHHHHHCCH
T ss_pred CHhhhHHHHHHHH------------HHHHhHHHHhcch-----------------hhhhHHHHHHHHHHHHHHhcccccc
Confidence 4899999999999 9999888774222 1233466789999999999999999
Q ss_pred ccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeee
Q 007862 164 PCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVL 243 (587)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~ 243 (587)
|+..++++||+++++ +++|.++|+|+|++.|+|+.+++.+.+++++++||.+.|+++.+.++++++.++..+++|..
T Consensus 52 ~ni~~~~~dq~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 52 PNISPFGADQYDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHHCSSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred ccHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence 999999999999763 36799999999999999999999999999999999999999999999999999999998877
Q ss_pred e-CCCCChhhh-HHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCC
Q 007862 244 V-EPEGSIFSG-IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 321 (587)
Q Consensus 244 ~-~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (587)
. ++.+++... ...+...+.+++....+. +....... .... ......+.........+... ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~---------~~ 192 (372)
T PF00854_consen 129 VAPPGGSPLTNFIKLVLVAAFKKRKLAVPK---GSSWLDWA---LFQY-SERSIFGIIVFIRAAVIFFP---------EI 192 (372)
T ss_dssp S-----S--S--SHHHHHHHHHHHCCCH-H---HHHHHHHH---HHHH-CCCCCCCCCCHHHHHHHHCC---------CH
T ss_pred cCccCCcccchhHHHHHHHHHHHhhccccc---chHHHHHh---hhhh-hhhhhhhhhhhccchhhhhh---------hh
Confidence 7 566666666 444444555555443322 11000000 0000 00000000001110110000 00
Q ss_pred Ccccc-ccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchh
Q 007862 322 NQWRL-CSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYD 400 (587)
Q Consensus 322 ~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~ 400 (587)
..|.. ++.+++++.+.+.+.++.+.+.+.+.....+...+...+...+++...+.+++|+..++.+|.+.++++.|+.|
T Consensus 193 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~ 272 (372)
T PF00854_consen 193 FFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILD 272 (372)
T ss_dssp HHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHH
T ss_pred hhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 11221 33455666777778888777778888888887777777777776666623889999999999999999999999
Q ss_pred hhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhH
Q 007862 401 TVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQI 480 (587)
Q Consensus 401 ~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~ 480 (587)
++.+|+.++ +...+...++..|+++..+++++....+..+.+.....+ ..+.+|.++.+++.+++|.+..+...
T Consensus 273 ~~~~p~~~~----~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~g~ 346 (372)
T PF00854_consen 273 RVVYPLLRR----GIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--KVSPWWQVPMYIFWLIPEYFLSGTGE 346 (372)
T ss_dssp HHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--T--THHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHhHHhhh----cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--CCChhhHHHHHHHHHHHHHHhhHHHH
Confidence 999988872 223588899999999999999988877765544444332 34558888999999999999999999
Q ss_pred HHHHhhCCchhhHHHHHHHHHHHH
Q 007862 481 EFFNKQFPDHMKSIANSLLFCSFG 504 (587)
Q Consensus 481 ~~~~~~~P~~~rg~~~gl~~~~~~ 504 (587)
+..+|.+|++..+.++|+++....
T Consensus 347 ~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 347 SAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp HHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred HHHHHhhHHhhhHHHHHHHHHHhc
Confidence 988888888888888888776554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=217.46 Aligned_cols=373 Identities=11% Similarity=0.042 Sum_probs=238.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.++.+....++..++.....+.++.|+.+++|.|..+.+++.+++.+...++++++|+++|| +||||+++++.++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHH
Confidence 445556666667777777777888889999999999999999999999999999999999999 5999999999887766
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+...+....+. ....+...++++|+++|+|.+...+...+++.|.+|+
T Consensus 94 ------------~~~~~~~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 143 (392)
T PRK12382 94 ------------AGLAYLLAAILPV------------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP 143 (392)
T ss_pred ------------HHHHHHhhhcccc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 4432211110000 0012678899999999999999999999999999987
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
++ |+++++++....++|..++|.+++++.+.+||++.+.+..+..++.+. ..+ +.++.+++++
T Consensus 144 ~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~------- 206 (392)
T PRK12382 144 KH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAG------- 206 (392)
T ss_pred cc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcc-------
Confidence 54 999999999999999999999999998889999887765544332221 111 1100000000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+ .+ +..+ ..|
T Consensus 207 --------------~---~~-----------------------~~~~------------------------------~~~ 216 (392)
T PRK12382 207 --------------E---RP-----------------------SLWS------------------------------VVG 216 (392)
T ss_pred --------------c---Cc-----------------------hHHH------------------------------HHH
Confidence 0 00 0000 000
Q ss_pred hhhhh-hHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 337 CLIKI-IPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 337 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
.++.. .........+.......+.+.. +.... ..+.......++.++..++.+++ .||+++|
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l----~~r~g~~-- 279 (392)
T PRK12382 217 LIWKPGLGLALQGVGFAVIGTFVSLYFA------SKGWA-----MAGFTLTAFGGAFVLMRVLFGWM----PDRFGGV-- 279 (392)
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHH------hcCCc-----hhHHHHHHHHHHHHHHHHHHHHH----HHhcCCC--
Confidence 00000 0001111111111111111110 01110 01111222333334444444443 6665433
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
+.+..+..+.+++++..... .+.++..+..++.+++++...+.......+.+|++.||++
T Consensus 280 -----~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 339 (392)
T PRK12382 280 -----KVAIVSLLVETVGLLLLWLA---------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTA 339 (392)
T ss_pred -----eehHHHHHHHHHHHHHHHHc---------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHH
Confidence 33555556666665544432 2344555667788899988888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007862 496 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 560 (587)
Q Consensus 496 ~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~ 560 (587)
.|+.+....+|..+++.+.+.+.+.. ++...|...+++.+++.+..+..
T Consensus 340 ~g~~~~~~~~g~~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 340 LGGYAAFQDIAYGVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887532 34567777777777777665544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=216.26 Aligned_cols=174 Identities=14% Similarity=0.066 Sum_probs=145.8
Q ss_pred CCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH
Q 007862 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 93 (587)
++|..+.......+++.+..+..-... +.+.+++|.|+.+.+++.++..++..+++++.|+++|| +||||++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence 556666666667777766666544444 46678999999999999999999999999999999999 5999999999988
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
..+ +.+...++. ++..+++.|++.|++.+...|...+++.|.
T Consensus 90 ~~~------------~~~~~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 131 (406)
T PRK11551 90 FGL------------FSLATAQAW--------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEA 131 (406)
T ss_pred HHH------------HHHHHHHhc--------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888 665555543 677889999999999999999999999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
+|+++ |++++++++...++|..+++.+++.+.+..+|++.|++.++..++.+++
T Consensus 132 ~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 132 VGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred cCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 98755 9999999999999999999999999988899999999877655544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=221.23 Aligned_cols=176 Identities=13% Similarity=0.030 Sum_probs=147.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.+..+.+....++..+..+.+...++.| .+++|.|..+.+++.+.+.++..++.+++|+++|| +||||+++++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSM-AQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 3356666666777777777777766665 56799999999999999999999999999999999 599999999988888
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.+.++++. +...++++|+++|+|.|+..|....++.|.+|
T Consensus 87 ~------------~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~ 128 (471)
T PRK10504 87 L------------GSLFCALSG--------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVP 128 (471)
T ss_pred H------------HHHHHHHhC--------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence 8 776655543 66778999999999999999999999999998
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
+++ |++++++.....++|..++|.+++++.+..+||+.|.+..+...+..+.....
T Consensus 129 ~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 129 REQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 744 89999999999999999999999999999999999999877666555544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=219.61 Aligned_cols=168 Identities=12% Similarity=0.126 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+.++...++.+++++.+.+.++.|+++++|+|..+.|.+.++..+...+..+++|+++|| +|||+++.++.++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~--- 88 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAA--- 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHH---
Confidence 677788889999999999999999999999999999999999999999999999999999 5999999999999998
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.+...++. +++.++..|.++|++.+...|...+++.|.+|+++
T Consensus 89 ---------~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~- 132 (400)
T PRK11646 89 ---------GFATMAIAH--------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ- 132 (400)
T ss_pred ---------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-
Confidence 777665543 66778999999999999999999999999998754
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
|++++++.+...++|..+||.+++++. .++|++.|++.++..++..++
T Consensus 133 -----~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 133 -----RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 689999999887766655444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.71 Aligned_cols=174 Identities=12% Similarity=0.163 Sum_probs=150.9
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHH
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 94 (587)
.+|+.+.++...++...+++...++++.|+++++|+|..+.+++.+++.++..+.+++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 34457788888999999999999999999999999999999999999999999999999999999 69999999999888
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
.+ +.++..+++ +.+.+++.|.+.+.+.+...|+......|.+
T Consensus 84 ~~------------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 125 (395)
T PRK10054 84 AS------------GFIAIPLVN--------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNL 125 (395)
T ss_pred HH------------HHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88 776665544 5666777888888888888888899999999
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
|+++ |++++++.+...++|..++|.+++++.+ .+|+..|.+.+++.++.+++.
T Consensus 126 ~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 126 SSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred CHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 8744 9999999999999999999999999875 799999998877766665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=221.16 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=137.3
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccch
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEY--------HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF 84 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--------~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~ 84 (587)
+.+.+..+...+..+...+... +.......+++++ |.+..+.+++.+++.++..++++++|+++|| +|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr 85 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTA-VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRR 85 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccc-eehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccH
Confidence 3344444444444444433333 2233334456655 8999999999999999999999999999999 5999
Q ss_pred hhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccc
Q 007862 85 KTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRP 164 (587)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 164 (587)
|+++++.+++.+ +.+..+++...-. ....++......++++|+++|++.|+..|
T Consensus 86 ~~~~~~~~l~~i------------~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (479)
T PRK10077 86 DSLKIAAVLFFI------------SALGSAWPEFGFT--------------SIGPDNTGYVPEFVIYRIIGGIGVGLASM 139 (479)
T ss_pred HHHHHHHHHHHH------------HHHHHHhhccccc--------------cccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence 999999999888 6655443210000 00001122456789999999999999999
Q ss_pred cccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc--------cccchhhHHHHHHHHHHHHHHHHH
Q 007862 165 CSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~--------~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
....+++|++|+++ |++++++......+|..+++.++..+. +..|||+.|++.++..++.++..+
T Consensus 140 ~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 140 LSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred HHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999855 999999999999999999887765443 457999999988776666554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=221.89 Aligned_cols=397 Identities=14% Similarity=0.085 Sum_probs=240.0
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHH
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 94 (587)
.|..+..+.+..++..+..-. .....+.+.+++|.+.++.+|+.+.+.++...+.+++|+++|| +|||++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~ti-v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATV-LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 344445555555555444443 3444456688999999999999999999999999999999999 59999999999999
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
.+ +.+.++++. +.+.++++|.++|+|.++..|.....+.+.+
T Consensus 82 ~~------------~~~~~~~a~--------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~ 123 (495)
T PRK14995 82 GL------------ASLAAAFSP--------------------------TASWLIATRALLAIGAAMIVPATLAGIRATF 123 (495)
T ss_pred HH------------HHHHHHHcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99 888887765 7788999999999999999998888887877
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
+++ ++|+++++++....++|..+||.+++++.+..+|||.|++..++.++.+++.+...++.+.++.++.+....
T Consensus 124 ~~~-----~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~ 198 (495)
T PRK14995 124 TEE-----KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHA 198 (495)
T ss_pred CCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhH
Confidence 431 349999999999999999999999999999999999999987766666555444333321111111111110
Q ss_pred H----H--HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcch-hH-----HHHHhhhccCCCCCCCCCCCC
Q 007862 255 G----Q--VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQF-RF-----LNKAAMIVDNNELKPDGTPVN 322 (587)
Q Consensus 255 ~----~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----l~~~~~~~~~~~~~~~~~~~~ 322 (587)
. . .+....+.. .. +.. ...... .. +......++ . ....+..
T Consensus 199 ~~~~~~~~~l~~~~~~~----~~---~~~----------------~~~~~~~~~~~~~~~l~~f~~~e---~-~~~~p~~ 251 (495)
T PRK14995 199 LMLIVAILLLVYSAKTA----LK---GFL----------------SLWVTSLTLLTGALLLGLFIRTQ---L-AASRPMI 251 (495)
T ss_pred HHHHHHHHHHHHHHHhc----cc---cCC----------------chHHHHHHHHHHHHHHHHHHHHH---h-cCCCCCc
Confidence 0 0 000111110 00 000 000000 00 000001110 0 0111222
Q ss_pred ccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhh
Q 007862 323 QWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTV 402 (587)
Q Consensus 323 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l 402 (587)
|++.+++ |.+.............+.........+.......+. ...+.......+...+..++..++
T Consensus 252 ~~~lf~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~-------~~ag~~~~~~~~~~~~~~~~~g~l 318 (495)
T PRK14995 252 DMRLFTH------RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSP-------LEAGMFMLPVMVASGFSGPIAGIL 318 (495)
T ss_pred CHHHhCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111111111111110011111000111100001110 111222223344444555554443
Q ss_pred hHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHH
Q 007862 403 LVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF 482 (587)
Q Consensus 403 ~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~ 482 (587)
.+|+++ ++.+..|+++.+++...+.... ...+.+......++.++|.+...++....
T Consensus 319 ----~~r~g~-------~~~~~~g~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~ 375 (495)
T PRK14995 319 ----VSRLGL-------RLVATGGMALSALSFYGLAMTD------------FSTQQWQAWGLMALLGFSAASALLASTSA 375 (495)
T ss_pred ----HHHcCc-------hHHHHHHHHHHHHHHHHHHHhc------------CCCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 666532 3456677777776665544321 12244445567788899999999999999
Q ss_pred HHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007862 483 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 519 (587)
Q Consensus 483 ~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~ 519 (587)
+.+.+|++.++.++++.++.+.+|+.+|..+.+.+.+
T Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 376 IMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888764
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=210.83 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
......+++.+++|.|..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..+ +..+.++
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~------------~~~~~~~ 78 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGV------------FTGLQAF 78 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHH------------HHHHHHH
Confidence 33445556899999999999999999999999999999999999 5999999999999888 7766666
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
+. +++.++++|++.|++.+...++...++.|.+|+++ |++.+++....
T Consensus 79 ~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 126 (399)
T TIGR00893 79 AG--------------------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSA 126 (399)
T ss_pred Hc--------------------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHh
Confidence 54 67889999999999999999999999999999754 99999999999
Q ss_pred HHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 196 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.++|..+++.+++++.+..+||+.|.+.++..++..+..++
T Consensus 127 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 127 QGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred chHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988999999999877766655544433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=226.77 Aligned_cols=154 Identities=11% Similarity=0.087 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
+.....+++.+++|++..+.+++.+++.++..++++++|+++|| +|||+++++++++..+ +.++.++
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i------------~~ll~af 251 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGF------------FAFFSSF 251 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH------------HHHHHHH
Confidence 45566678889999999999999999999999999999999999 6999999999998888 7766666
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
+. +++.++++|+++|+|.|+..|+...+++|.+|++. |++.+++..+.
T Consensus 252 a~--------------------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~ 299 (742)
T TIGR01299 252 VQ--------------------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMF 299 (742)
T ss_pred Hh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 54 67889999999999999999999999999999754 99999999999
Q ss_pred HHHHHHHHhhhhhhcccc-------------cchhhHHHHHHHHHHHHHHHH
Q 007862 196 FTVVILITQTVLVYIQDS-------------VSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~-------------~~w~~~f~i~~~~~~~~~~~~ 234 (587)
..+|.++++.++..+... .+||+.|++.++..++.+++.
T Consensus 300 ~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 300 WMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999998876555432 368999988777666555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=217.11 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhccc
Q 007862 23 LGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFV 102 (587)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~ 102 (587)
+...++..+..+.....+ +.+.+++|+|.++.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~------ 100 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAM-PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGI------ 100 (434)
T ss_pred HHHHHHHHHhhhhHHHhh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHH------
Confidence 333333333333444444 45567899999999999999999999999999999999 5999999999999998
Q ss_pred ccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccc
Q 007862 103 TKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGV 182 (587)
Q Consensus 103 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 182 (587)
+.++.+++. +++.+++.|++.|++.|...+....++.|++|+++
T Consensus 101 ------~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---- 144 (434)
T PRK11663 101 ------INILFGFSS--------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE---- 144 (434)
T ss_pred ------HHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH----
Confidence 877666654 67788899999999999999999999999999755
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 183 KGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 183 ~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
|++++++++...++|..+++.+.+++.+.++||+.|++.++..++..+
T Consensus 145 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 145 --RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987766554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=212.47 Aligned_cols=391 Identities=13% Similarity=0.087 Sum_probs=241.1
Q ss_pred ccccCCCCccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhh-----HHHHHHHHHHHHHHHhhhhHHHhhccc
Q 007862 8 KDQKKPGGWKA-MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS-----AANILNIWGGVTNFAPLLGAFISDTYI 81 (587)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~-----~~~i~~~~~~~~~~~~~~~G~laD~~~ 81 (587)
+|+..+.+|+. ........++...++......++.|+ +++|.+..+ .+++.++..+...++.++.|+++|| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~ 81 (408)
T PRK09874 4 CENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-K 81 (408)
T ss_pred CcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h
Confidence 34444455655 44445666677777777777777776 568988655 4888999999999999999999999 5
Q ss_pred cchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccc
Q 007862 82 GRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGG 161 (587)
Q Consensus 82 Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 161 (587)
|||+++.++.++..+ +.+++.+.. +++.+++.|++.|++.+
T Consensus 82 g~r~~~~~~~~~~~~------------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~- 122 (408)
T PRK09874 82 GRKIMLLRSALGMGI------------VMVLMGLAQ--------------------------NIWQFLILRALLGLLGG- 122 (408)
T ss_pred CcHHHHHHHHHHHHH------------HHHHHHHHh--------------------------hHHHHHHHHHHHHHhhh-
Confidence 999999999988888 766555433 67788999999999865
Q ss_pred ccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007862 162 IRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY 241 (587)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~ 241 (587)
..+....++.|.+|+++ |+++.++.....++|..++|.+++.+.+..+|++.|++..+..++..+..++..++.
T Consensus 123 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 123 FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46777788889888754 899999999999999999999999999889999999988776665554433322211
Q ss_pred eeeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCC
Q 007862 242 VLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 321 (587)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (587)
.. +.+++... +..+....
T Consensus 197 ~~--~~~~~~~~----------------------------------------------~~~~~~~~-------------- 214 (408)
T PRK09874 197 FQ--PVSKKEML----------------------------------------------HMREVVTS-------------- 214 (408)
T ss_pred cc--cccchhhh----------------------------------------------HHHHHHHh--------------
Confidence 00 00000000 00000000
Q ss_pred CccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhh
Q 007862 322 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDT 401 (587)
Q Consensus 322 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~ 401 (587)
..+.+.....+... ..+........+.............. ......+.+..+..++.++..+..++
T Consensus 215 ----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~ 280 (408)
T PRK09874 215 ----------LKNPKLVLSLFVTT---LIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGK 280 (408)
T ss_pred ----------CcCCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111011100 11111111111110000000000000 00000111112223333344443333
Q ss_pred hhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHH
Q 007862 402 VLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIE 481 (587)
Q Consensus 402 l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~ 481 (587)
+ .||+++ ++.+..+..+..++++..... .+.+.+.+..++.+++.+...|...+
T Consensus 281 l----~dr~g~-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (408)
T PRK09874 281 L----GDRIGP-------EKILITALIFSVLLLIPMSFV---------------QTPLQLGILRFLLGAADGALLPAVQT 334 (408)
T ss_pred H----Hhcccc-------chhHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 3 555533 344555555555444443322 23445556677889999999999999
Q ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007862 482 FFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 482 ~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~ 561 (587)
...+..|++.+|+..++.+....+|..+++.+.+.+.+.. ++...|...+++.+++.+..+...
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888876422 356778888888888777665544
Q ss_pred hh
Q 007862 562 RR 563 (587)
Q Consensus 562 ~~ 563 (587)
++
T Consensus 399 ~~ 400 (408)
T PRK09874 399 RR 400 (408)
T ss_pred HH
Confidence 33
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=208.92 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=141.4
Q ss_pred CCccchhHHHHHHHHHHHHhh---hhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 14 GGWKAMPYILGNETFERLATI---GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
.+.+..+......+++.+.++ ...+.++ .+.+++|.|..+.++..+++.++..++.++.|+++|| +||||+++++
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~ 84 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAG 84 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHH
Confidence 344455555555555544443 3333333 4678999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.++..+ +.+....+. +.+.++..|+++|++.+...+...+.+
T Consensus 85 ~~~~~~------------~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i 126 (406)
T PRK15402 85 VAFFIL------------TCLAILLAQ--------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAI 126 (406)
T ss_pred HHHHHH------------HHHHHHHHc--------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 988888 766655543 667789999999999999889999999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
.|.+|+++ |.+..++.+....++..++|.+++++.+..+||+.|++.++..++..+..+
T Consensus 127 ~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 127 QESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 99998754 788888888888899999999999999889999999987776665555433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=215.91 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=126.7
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccC
Q 007862 40 FMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWL 119 (587)
Q Consensus 40 ~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 119 (587)
+...+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++..+ +.++++++.
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~------------~~~~~~~~~-- 105 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASL------------GMILASFSS-- 105 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHH------------HHHHHHHhh--
Confidence 3456788999999999999999999999999999999999 6999999999988888 777766654
Q ss_pred CCCCCCCCCCCCCCCCcccCCcchhHHHHH-HHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHH
Q 007862 120 PQLHPPKCDVAKPPFGQCKSANSMQLGVLV-MGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 198 (587)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 198 (587)
+...++ ..|++.|++.|...+.....+.|+++ + +|+++.++.+.+.++
T Consensus 106 ------------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~ 154 (455)
T TIGR00892 106 ------------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPV 154 (455)
T ss_pred ------------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccH
Confidence 455554 45789999999876667778888885 3 389999999999999
Q ss_pred HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 199 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 199 g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
|..++|.+++++.+.+|||+.|++.+++.+++.+..++
T Consensus 155 g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 155 FLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988876665554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=209.27 Aligned_cols=370 Identities=9% Similarity=-0.013 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
.+.+.++.+..++.+.+.+| .+.+++|.|+++.+++.+++.++..+++++.|+++|| +||||++..+.+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~----- 86 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAV----- 86 (393)
T ss_pred HHHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHH-----
Confidence 34555555555555554444 6789999999999999999999999999999999999 5999999999999999
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
+.+.+++++ ++..++.+|+++|+|.|...++....+.|++| ++
T Consensus 87 -------~~~~~~~a~--------------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~--- 129 (393)
T PRK09705 87 -------GALMRELYP--------------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR--- 129 (393)
T ss_pred -------HHHHHHHCc--------------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc---
Confidence 999888876 66778999999999999999999999999886 33
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVA 260 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (587)
|+++++.+....++|..+++.+++++.+.. +||+.+.+..+..++++...+...++ +|++++
T Consensus 130 ---~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------- 192 (393)
T PRK09705 130 ---TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH---------- 192 (393)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc----------
Confidence 899999999999999999999999988775 89998876555444333332221111 111000
Q ss_pred HHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhh
Q 007862 261 AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIK 340 (587)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 340 (587)
++. . .+.+ ... .+..+.
T Consensus 193 --------------~~~--------~-----------------------------------~~~~-----~l~-~~~~~~ 209 (393)
T PRK09705 193 --------------KTT--------T-----------------------------------TPVR-----VVF-TPRAWT 209 (393)
T ss_pred --------------CCC--------c-----------------------------------CCcc-----ccc-CHhHHH
Confidence 000 0 0000 000 011111
Q ss_pred hhH-HHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCCh
Q 007862 341 IIP-IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 419 (587)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~ 419 (587)
... .......++....+.+.+.. + ...+.. ..+....+..++.++..++.+++ .||.+ +
T Consensus 210 l~~~~~~~~~~~~~~~~~lp~~l~-~-~g~s~~-------~ag~~~~~~~i~~i~g~~~~g~l----~~r~~-------~ 269 (393)
T PRK09705 210 LGVYFGLINGGYASLIAWLPAFYI-E-IGASAQ-------YSGSLLALMTLGQAAGALLMPAM----ARHQD-------R 269 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-cCCChh-------hhhHHHHHHHHHHHHHHHHHHHH----Hhhcc-------c
Confidence 111 11111222222222222221 1 111111 12233334445555555544333 55543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCC-chhhHHHHHH
Q 007862 420 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-DHMKSIANSL 498 (587)
Q Consensus 420 ~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P-~~~rg~~~gl 498 (587)
++.+..++.+..++...+.... .+...+ ..++.+++.+...|.......+..+ ++.+|+..|+
T Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~ 333 (393)
T PRK09705 270 RKLLMLALVLQLVGFCGFIWLP--------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAF 333 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHcc--------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 3445556656555554433221 111112 2234567777777877777777775 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 499 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 566 (587)
Q Consensus 499 ~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~ 566 (587)
.+....++..+++.+.+.+.+.+ +++...|.+.++.+++..+..+.+.+|++.
T Consensus 334 ~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 334 MQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999888643 234556677777777776666666665443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=203.54 Aligned_cols=186 Identities=11% Similarity=0.136 Sum_probs=163.2
Q ss_pred ccccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhh
Q 007862 8 KDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 87 (587)
.+++.+..|..++.+-+..+.-...-|.... +.+-+.+++|.|..++|++++++..+..++.|+...+.|| +.||+++
T Consensus 4 ~~~~~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lL 81 (394)
T COG2814 4 PATARKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLL 81 (394)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHH
Confidence 3445666777777666666666555564444 4456799999999999999999999999999999999999 6999999
Q ss_pred hHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccc
Q 007862 88 TFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 167 (587)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 167 (587)
+..+.++++ |.++.+++. ++..++++|++.|+..|.+.+...
T Consensus 82 l~~l~lFi~------------~n~l~alAp--------------------------~f~~Ll~aR~~~g~a~G~f~~i~~ 123 (394)
T COG2814 82 LGLLALFIV------------SNLLSALAP--------------------------SFAVLLLARALAGLAHGVFWSIAA 123 (394)
T ss_pred HHHHHHHHH------------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999987 889999999999999999999999
Q ss_pred ccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 168 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 168 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+..+|..|+++ |+++.+....+.+++..+|..++.++.+.+|||..|++-+++.+++++..+...|
T Consensus 124 ~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 124 ALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999866 9999999999999999999999999999999999999988887777766655444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-22 Score=219.88 Aligned_cols=177 Identities=12% Similarity=0.044 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHHhhh---hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 19 MPYILGNETFERLATIG---LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.+.++...++..+..|. ......+.+.+++|+|.++.+++.+++.+++.++++++|+++|| +||||++.++.+++.
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 105 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSA 105 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHH
Confidence 44444444444443333 23344567889999999999999999999999999999999999 599999988887766
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.+..++... ..+.+...+++.|+++|++.|...|+...+++|++|
T Consensus 106 ~------------~~~~~~~~~~---------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 152 (467)
T PRK09556 106 I------------CMLGFGASLG---------------------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTP 152 (467)
T ss_pred H------------HHHHHHHHHh---------------------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcC
Confidence 6 4444332100 001178889999999999999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc---chhhHHHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV---SWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~---~w~~~f~i~~~~~~~~~~~~~ 235 (587)
+++ |+++++++....++|.++++.+..++.+.. +|+..|.+.+++.++..++.+
T Consensus 153 ~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 153 RRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred ccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 865 999999999999999999999887766543 699988887766555444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=211.86 Aligned_cols=153 Identities=17% Similarity=0.265 Sum_probs=128.3
Q ss_pred HHHHHHHhhCCC--------hhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceE
Q 007862 40 FMVYLLKEYHMN--------QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGML 111 (587)
Q Consensus 40 ~~~yl~~~~~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 111 (587)
....+..+++.+ ..+.+++.+++.++..++.+++|+++|| +|||++++++.+++.+ +.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~------------~~~ 116 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVI------------GAI 116 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHH------------HHH
Confidence 334455666666 8999999999999999999999999999 5999999999999888 777
Q ss_pred EEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhH
Q 007862 112 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (587)
+..+... ..+.+.++++|+++|+|.|...+....+++|.+|+++ |++++++
T Consensus 117 ~~~~~~~-----------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 167 (481)
T TIGR00879 117 LMGLAAF-----------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSL 167 (481)
T ss_pred HHHHhcc-----------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhH
Confidence 6654331 1145679999999999999999999999999999865 9999999
Q ss_pred HHHHHHHHHHHHhhhh---hhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 192 YYTTFTVVILITQTVL---VYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 192 ~~~~~~~g~~i~~~~~---~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
++...++|..+++.++ +.+.+..+||+.|++.++..++.++..
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 777778899999999666555554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=212.67 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=130.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhh-HHH-----HHHHHHHHHHHHhhhhHHHhhccccchhhhhH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS-AAN-----ILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~-~~~-----i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 89 (587)
+|......+..++|.+.+. +..+..+++.++++.+.++ .++ +.++..++..++++++|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 4455555566667766554 4566677889998754322 122 2466678889999999999999 599999999
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
+.+++.+ +.++++++.++.+++ ...+..+++.|+++|+|.|+..|+...+
T Consensus 93 ~~~l~~i------------~~~~~a~~~~~~~~g------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 93 TIVIMSI------------STFCIGLIPSYATIG------------------IWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHH------------HHHHHHhcccHHHHH------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 9999999 888888866311000 0011258999999999999999999999
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc--------cccchhhHHHHHHHHHHH
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIG 229 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~--------~~~~w~~~f~i~~~~~~~ 229 (587)
++|++|+++ |+++.++...+.++|..+++.+...+. ..+|||+.|++..+..++
T Consensus 143 ~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 143 VAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 999999855 999999988888888888876554332 258999999997655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=205.18 Aligned_cols=157 Identities=8% Similarity=-0.030 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
+.......+.+++++|+|+++.+++.+++.+++.++++++|+++|| +|||+++..+...... +.. .
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~------------~~~-~ 72 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAA------------AAG-R 72 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHH------------HHH-H
Confidence 3445566667899999999999999999999999999999999999 5999887655544444 322 1
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
.... .++..+++.|+++|+|.|.. +.....++|++|+++ |+++.++..
T Consensus 73 ~~~~-------------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~ 120 (368)
T TIGR00903 73 LLDP-------------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLS 120 (368)
T ss_pred HHHh-------------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 1211 16788999999999999974 555566799999754 999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 194 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
...++|..+++.+++++.+.+|||+.|.+.+++.++..++++.
T Consensus 121 ~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 121 FAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999866665555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=210.63 Aligned_cols=178 Identities=11% Similarity=0.017 Sum_probs=146.2
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
|.+|+..+.+...-+++..... ......+++++++|+|.++.+++.+++.++..++++++|+++|| +||||++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHH
Confidence 3456655555554444444433 33445558999999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
++.+ +.++.+++. +...+++.|+++|++.|+..|+...++.|
T Consensus 82 ~~~~------------~~~~~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~ 123 (412)
T TIGR02332 82 LWGI------------ASTATMFAT--------------------------GPESLYLLRILVGIAEAGFLPGILLYLTF 123 (412)
T ss_pred HHHH------------HHHHHHHhc--------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999 887777755 67789999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc------ccchhhHHHHHHHHHHHHHHHHHh
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------SVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~------~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++|+++ |++..+++....++|..+++.+++++.+ ..|||+.|.+.++..++..++.++
T Consensus 124 ~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 124 WFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 999754 9999999999999999999999998863 469999999977766554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=212.49 Aligned_cols=391 Identities=13% Similarity=0.125 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
.+....++..+.. .+.....+++.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..+
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~---- 79 (485)
T TIGR00711 6 VLMLGTFMAVLDS-TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTL---- 79 (485)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHH----
Confidence 3334444444443 344555667789999999999999999999999999999999999 5999999999999999
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+.++++.+. +...++++|+++|++.+...|...+++.|.+|+++
T Consensus 80 --------~~~~~~~~~--------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-- 123 (485)
T TIGR00711 80 --------GSLLCGVAP--------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK-- 123 (485)
T ss_pred --------HHHHHhCcC--------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH--
Confidence 887776654 67889999999999999999999999999999754
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhH--HH--
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI--GQ-- 256 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 256 (587)
|++++++++...++|..++|.+++++.+.++||+.|++..+..++.+++.++..++.++.+.++...... ..
T Consensus 124 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~ 199 (485)
T TIGR00711 124 ----RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVG 199 (485)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877766655554443333221111111111000 00
Q ss_pred --HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhH-HH-----HHhhhccCCCCCCCCCCCCcccccc
Q 007862 257 --VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRF-LN-----KAAMIVDNNELKPDGTPVNQWRLCS 328 (587)
Q Consensus 257 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-----~~~~~~~~~~~~~~~~~~~~w~~~~ 328 (587)
.+.....+.. + .+ +.. ....... .. .....++.+ ...+..+++.++
T Consensus 200 ~~~~~~~~~~~~----~---~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 253 (485)
T TIGR00711 200 LGSLLYGLSEGP----E---RG----WFD-----------SNEILILSITGLVAIIAFVVWELT----DDNPLVDLRLFK 253 (485)
T ss_pred HHHHHHHHhhCC----C---CC----CCC-----------chHHHHHHHHHHHHHHHHHHHHHc----CCCCccCHHHHc
Confidence 0000000000 0 00 000 0000000 00 000000000 001111111111
Q ss_pred ceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccc-cCcccccccchhhhhhhhhchhhhhHHHh
Q 007862 329 IQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPAL 407 (587)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~i~~~l~~~l~~~l~~~l~ 407 (587)
+ ++.....+..+.....++......+.+. ....+ .+ ...+.......++.++..++..++ .
T Consensus 254 ~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~g--~s~~~~g~~~~~~~~~~~~~~~~~g~l----~ 315 (485)
T TIGR00711 254 Y-----RNFTIGCVYMSLLGLGLYGSFYLLPLYL-------QQVLG--YTALQAGLHILPVGLAPMLSSPIAGRM----G 315 (485)
T ss_pred C-----CChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 1 1111111111111111111111111111 11111 00 011233333445555555554443 5
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhC
Q 007862 408 RKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487 (587)
Q Consensus 408 ~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~ 487 (587)
+|+ ++++.+..|.++.+++..++.... ....+.+.+....++.++|.+...++......+..
T Consensus 316 ~r~-------~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 377 (485)
T TIGR00711 316 DKI-------DPRKLVTIGLILYAVGFYWRAFTF-----------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL 377 (485)
T ss_pred hhc-------CcHHHHHHHHHHHHHHHHHHhccC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 554 334556667777776666554211 11234455666678899999998888888888999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007862 488 PDHMKSIANSLLFCSFGFASYLSSLLITIVHG 519 (587)
Q Consensus 488 P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~ 519 (587)
|++.+|+++|+.++.+.+|+.+++.+.+.+.+
T Consensus 378 ~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 378 PPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=205.15 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeee
Q 007862 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLT 116 (587)
Q Consensus 37 ~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 116 (587)
...+.+++.+++|+|..+.+++.+++.++..++++++|+++|| +|||+++.++.++..+ +.+..+++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~------------~~~~~~~~ 88 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGL------------GFTFYAIA 88 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHH------------HHHHHHHH
Confidence 3456678899999999999999999999999999999999999 5999999999999999 88776665
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHH
Q 007862 117 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196 (587)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (587)
. +.+.+++.|.+.|++.|...++..+.+.+++|+ +|+++.+++....
T Consensus 89 ~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 135 (377)
T TIGR00890 89 D--------------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGY 135 (377)
T ss_pred H--------------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhc
Confidence 5 778899999999999999888888888888863 3899999999999
Q ss_pred HHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 197 TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 197 ~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++|..+++.+.+.+.+..+||+.|++.+++.++..+..++
T Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 136 GLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred chhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877777777777789999999988776665554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=206.13 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=126.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhC---CChhhHHHHHHHHHHHHH---HHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 25 NETFERLATIGLLANFMVYLLKEYH---MNQTSAANILNIWGGVTN---FAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~yl~~~~~---~s~~~~~~i~~~~~~~~~---~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
..++|.+.... ...+.+++.++++ .+..+.+.+..++..+.. ++++++|+++|| +||||++.++.+++.+
T Consensus 30 ~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~-- 105 (432)
T PRK10406 30 GNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCF-- 105 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH--
Confidence 35566555554 6677778999984 566655554555544444 999999999999 5999999999999999
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
++++++++.++.+. ...++..+++.|+++|+|.|+..|.+.++++|.+|+++
T Consensus 106 ----------~~~~~~~~~~~~~~------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 106 ----------GSLVIACLPGYETI------------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred ----------HHHHHhhcCCchhH------------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 88777665421100 00134578999999999999999999999999999855
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcc--------cccchhhHHHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGA 230 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~--------~~~~w~~~f~i~~~~~~~~ 230 (587)
|+++.++.+...+.|..+++.+...+. +.+|||+.|++.++..++.
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 899999988888888888887655443 2579999999877765544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=205.45 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=149.5
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
.++.+|+.+.......+++.+..+.+....+ .+.+++|.|..+.+++.+++.++..++.++.|+++|| +|||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHH
Confidence 4467788877778888888777776555544 6789999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.++..+ +.++++++. ++..++..|++.|++.+...+...+++
T Consensus 84 ~~~~~~------------~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i 125 (405)
T TIGR00891 84 IVLFSA------------GTLACGFAP--------------------------GYITMFIARLVIGIGMGGEYGSSAAYV 125 (405)
T ss_pred HHHHHH------------HHHHHHHhc--------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 998888 776666544 677899999999999999999999999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc--hhhHHHHHHHHHHHHH
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFGIPTVLMIGAI 231 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~--w~~~f~i~~~~~~~~~ 231 (587)
.|.+|+++ |+++.+++....++|..+++.+++.+.+..+ ||+.|.+..+..++.+
T Consensus 126 ~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 126 IESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999755 9999999999999999999999998887665 9999988665554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=211.22 Aligned_cols=168 Identities=13% Similarity=0.153 Sum_probs=143.4
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+.+|+......+..+...+..+.. ....+++++++|.|+.+.+++.+++.++..++++++|+++|| +|||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 345565655565555555555543 555567889999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.+..+++. +.+.++++|+++|+|.|...++...++.|
T Consensus 92 ~~~~------------~~~~~~~~~--------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~ 133 (426)
T PRK12307 92 AYSV------------GTGLSGLAS--------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVE 133 (426)
T ss_pred HHHH------------HHHHHHHHh--------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999 877766654 77889999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 226 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~ 226 (587)
.+|+++ |+++.+++..+.++|..+++.+.+++.+..+||+.|++..+.
T Consensus 134 ~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 134 SWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999855 999999999999999999999999999989999999885543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=203.98 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=147.2
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHH
Q 007862 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (587)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 91 (587)
.+..|+.+..+....++.....|.....++. +.+++|.++++.++..+++.++..+++++.|+++|| +||||+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHH
Confidence 3457766555555555454555655555554 578999999999999999999999999999999999 69999999999
Q ss_pred HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 92 IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
++..+ +.++..++. +++.+++.|+++|++.|...|...+++.
T Consensus 93 ~~~~~------------~~~~~~~~~--------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 134 (394)
T PRK10213 93 VLLTL------------SCLLVSFAN--------------------------SFSLLLIGRACLGLALGGFWAMSASLTM 134 (394)
T ss_pred HHHHH------------HHHHHHHHC--------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999 877766654 7888999999999999999999999999
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHH
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 231 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 231 (587)
|++|+++ |+++.++.....++|..++|.+++++.+.+|||+.|++.+++.++.+
T Consensus 135 ~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 135 RLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 9998754 99999999999999999999999999999999999998776555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=201.38 Aligned_cols=359 Identities=10% Similarity=0.002 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
.++...++..++.......++.|. .+++.+..+.+++.+++.++..++.++.|+++|| +||||++.++.++..+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~---- 76 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAV---- 76 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHH----
Confidence 345666677777766667777665 4689999999999999999999999999999999 5999999999888777
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+.++..+.... +..+.+.+++.|+++|++.+...|+..+++.|.+|+++
T Consensus 77 --------~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 125 (365)
T TIGR00900 77 --------LVAVLPFVALL---------------------GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ-- 125 (365)
T ss_pred --------HHHHHHHHHHc---------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--
Confidence 55554443310 01267889999999999999999999999999999754
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHH
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVA 260 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (587)
|++.+++.....++|..++|.+++++.+..+|++.|++.++..+++.+..+..+.+... ++++++..
T Consensus 126 ----~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------- 192 (365)
T TIGR00900 126 ----LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA-ASEIQALS-------- 192 (365)
T ss_pred ----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC-Cccccccc--------
Confidence 99999999999999999999999999998999999998777665554443332211000 00000000
Q ss_pred HHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhh
Q 007862 261 AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIK 340 (587)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 340 (587)
+ ....+..+. ++... . .|.+..
T Consensus 193 ----------~------------------------~~~~~~~~~-------------------~~~~~----~-~~~~~~ 214 (365)
T TIGR00900 193 ----------N------------------------AVLRDTREG-------------------IKFVL----K-NPLLRT 214 (365)
T ss_pred ----------h------------------------hHHHHHHhH-------------------HHHHH----c-CcHHHH
Confidence 0 000000000 00000 0 011111
Q ss_pred hhHHH-HHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCCh
Q 007862 341 IIPIW-AAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 419 (587)
Q Consensus 341 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~ 419 (587)
.+... .....+........+++.....+.+. ...+.+.....++.++..++..++ .+|. .+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~ 276 (365)
T TIGR00900 215 LLLLALLFNLVFAPAIVALFPYVQSKYLGRGS-------THYGWVLAAFGLGALLGALLLGLL----GRYF-------KR 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------ch
Confidence 11111 11111111110111111110000000 011223333444444444443332 4443 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHH
Q 007862 420 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 499 (587)
Q Consensus 420 ~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~ 499 (587)
++.+..+..+.+++....... .. +.+......++.+++.+...+...++..+.+|++.||++.|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 342 (365)
T TIGR00900 277 MALMTGAIFVIGLAILVVGLT-------------PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ 342 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHhh-------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555544432 11 3455566778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 007862 500 FCSFGFASYLSSLLITIVHG 519 (587)
Q Consensus 500 ~~~~~lg~~l~~~l~~~v~~ 519 (587)
+....++..+++.+.+.+.+
T Consensus 343 ~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 343 FSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=199.95 Aligned_cols=176 Identities=13% Similarity=0.156 Sum_probs=142.8
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
..+||..+...+.-++.....+.. ..+.+.+.+++|+|.++.+++.+++.++..++.+++|+++|| +||||++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVT-GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 345566666666555555554444 344445788999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.++..++. +...+++.|+++|++.|...++..+.+.|
T Consensus 81 ~~~i------------~~~l~~~~~--------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~ 122 (394)
T PRK03699 81 LMIL------------AVAGLMFSH--------------------------SLALFSIAMFVLGVVSGITMSIGTFLITH 122 (394)
T ss_pred HHHH------------HHHHHHHcc--------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhh
Confidence 8888 777666654 67788999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-ccchhhHHHHHHHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
.+|+++ |++..+..+...++|..++|.+.+++.+ ..+||+.|.+.++..++.+++.
T Consensus 123 ~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 123 VYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred hcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 998744 8999998888889999999999888754 5799999998777665554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-21 Score=196.32 Aligned_cols=345 Identities=16% Similarity=0.220 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
......++...+++......+.|. +++|.+..+.+++.+...+...++.++.|+++|| +||||++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~---- 76 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFAL---- 76 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHH----
Confidence 445566677777777777777664 6789999999999999999999999999999999 5999999999999988
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+.+...+.. +.+.++..|++.|++.+...+...+++.|.+|+++
T Consensus 77 --------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 120 (352)
T cd06174 77 --------GSLLLAFAS--------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE-- 120 (352)
T ss_pred --------HHHHHHHhc--------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc--
Confidence 777666543 67889999999999999999999999999999855
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHH
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVA 260 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (587)
|++.+++.+...++|..++|.+++.+.+..+|++.|.+..+..++..+.....+| .
T Consensus 121 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~------- 176 (352)
T cd06174 121 ----RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------L------- 176 (352)
T ss_pred ----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------H-------
Confidence 9999999999999999999999999999889999999888776666554433210 0
Q ss_pred HHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhh
Q 007862 261 AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIK 340 (587)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 340 (587)
++.
T Consensus 177 -----------------------------------------------------------------------------~~~ 179 (352)
T cd06174 177 -----------------------------------------------------------------------------LLL 179 (352)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred hhHH-HHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCCh
Q 007862 341 IIPI-WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 419 (587)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~ 419 (587)
.... ..............+.+.. ...+.+. ...+.......++..+..++..++ .+|.++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~------ 241 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQ-EVLGLSA-------AEAGLLLSLFGLGGILGALLGGLL----SDRLGRR------ 241 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh------
Confidence 0000 0000000110000011110 0000000 112333444555666666654444 6776443
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHH
Q 007862 420 LQ-RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL 498 (587)
Q Consensus 420 ~~-~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl 498 (587)
+ .+..+.++..++.+..... .+.+......++.+++++...+...++..+..|++.|++.+|+
T Consensus 242 -~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd06174 242 -RLLLLIGLLLAALGLLLLALA---------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305 (352)
T ss_pred -hHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHH
Confidence 3 5667777777776666543 2355667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 007862 499 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 558 (587)
Q Consensus 499 ~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~ 558 (587)
.+....++..+++.+.+.+.+.. ++...|...+++.+++.+..+
T Consensus 306 ~~~~~~~~~~i~~~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 306 FNTFGSLGGALGPLLAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999998876421 334567777777777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=207.53 Aligned_cols=166 Identities=18% Similarity=0.259 Sum_probs=143.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccc
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVT 103 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~ 103 (587)
...++..++.......++.++.+++|.|..+.+++.+++.++..++.+++|+++|| +||||++.++.++..+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~------- 74 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFAL------- 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhh-------
Confidence 44556666666666666668899999999999999999999999999999999999 5999999999999999
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
+.+...++. +.+.+++.|++.|++.+...++..+++.|.+|+++
T Consensus 75 -----~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~----- 118 (352)
T PF07690_consen 75 -----GSLLLAFAS--------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE----- 118 (352)
T ss_dssp -----HHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC-----
T ss_pred -----HHHHhhhhh--------------------------hHHHHhhhccccccccccccccccccccccchhhh-----
Confidence 744433432 45589999999999999999999999999999855
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 184 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 184 ~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
|++.+++.....++|..++|.+++++.+..+||+.|++.+++.++..++.
T Consensus 119 -~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 119 -RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred -hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 99999999999999999999999999999999999999988888776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=199.77 Aligned_cols=171 Identities=15% Similarity=0.079 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhH-HHHHHHHhhhcc
Q 007862 23 LGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF-ASIAAILLAEHF 101 (587)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~-~~~~~~~~~~~~ 101 (587)
++..++..++.....+.++.|+++++|.|..+.+++.+++.+...+..++.|+++|| +||||.+++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~----- 76 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAAL----- 76 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHH-----
Confidence 456777888888888999999999999999999999999999999999999999999 599987665 4444445
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
+.++..++. +++.+++.|.+++.+.+...|....+..|..|++.
T Consensus 77 -------~~~~~~~~~--------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~--- 120 (375)
T TIGR00899 77 -------ACLLFAWNR--------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG--- 120 (375)
T ss_pred -------HHHHHHhcc--------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc---
Confidence 444444433 66778888999988888888888888888776532
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+.+....++.+...++|..++|.+++++.+..+||+.|++.++..++..++.+.
T Consensus 121 -~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 121 -REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred -hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 122233677778889999999999999999899999999988766655554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=210.21 Aligned_cols=173 Identities=16% Similarity=0.054 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHhhhh---HHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 20 PYILGNETFERLATIGL---LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.++...++....+|.. .....+|+.++ |+|..+.+++.+++.++..++++++|+++|| +|||++++++.++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHH
Confidence 33444444444444432 34455678888 9999999999999999999999999999999 5999999999998888
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+.+++... ...+...+++.|++.|++.|...|.....+.|++|+
T Consensus 106 ------------~~~~~~~~~~----------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~ 151 (452)
T PRK11273 106 ------------VMLFMGFVPW----------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 151 (452)
T ss_pred ------------HHHHHHhhhc----------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh
Confidence 6665554321 011567788999999999999999888889999987
Q ss_pred CCcccccchhhhhhHHHHHHHHHHH-HHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVIL-ITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
++ |++++++++.+.++|.. .+|.++..+....+||+.|++.+++.++..++.
T Consensus 152 ~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 152 KE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 54 99999999999999874 556544334334599999999777655544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=200.19 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=145.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.+.++.+.+..++..++.....+.+ +++.+++|.|+.+.+++.+++.++..++.++.|+++|| +||||++.++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHH
Confidence 3444555555555555555444444 45688999999999999999999999999999999999 599999999999888
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.+....+. +...+++.|++.|++.+...+...+++.|.+|
T Consensus 82 ~------------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 123 (385)
T TIGR00710 82 L------------SSLGLALSN--------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYP 123 (385)
T ss_pred H------------HHHHHHHHc--------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC
Confidence 8 777665544 67788999999999999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+++ |++.+++.+...++|..++|.+++++.+..+||+.|++.++..++..+..+.
T Consensus 124 ~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 124 GEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 754 9999999999999999999999999999899999999877766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=196.43 Aligned_cols=176 Identities=10% Similarity=0.121 Sum_probs=144.7
Q ss_pred ccccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhh
Q 007862 8 KDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 87 (587)
++.+|.+-||++....+..++..++.+....++++|+ +++|.|.++.+++.+.+.++..++.+++|+++|| +||||++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l 81 (402)
T TIGR00897 4 NNLQKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTM 81 (402)
T ss_pred ccHHHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHH
Confidence 3456778889999999999998888887888888887 6799999999999999999999999999999999 5999999
Q ss_pred hHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccc
Q 007862 88 TFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 167 (587)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 167 (587)
..+.++..+ +.+++.+.... ..++..+++.|.++|+|.+...+...
T Consensus 82 ~~~~~~~~~------------~~~~~~~~~~~----------------------~~~~~~l~~~~~i~G~g~~~~~~~~~ 127 (402)
T TIGR00897 82 MIGLLLWCV------------GHAAFIVFGLG----------------------HANYPLILLFYGIRGLGYPLFAYSFL 127 (402)
T ss_pred HHHHHHHHH------------HHHHHHHHhcc----------------------CccHHHHHHHHHHHHcchHHHHhHHH
Confidence 999999888 65433211100 01567788899999999998888888
Q ss_pred ccccccCCCCCcccccchhhhhhHHHHHHHHHH-HHHhhhhhhcccccchhhHHHHHHH
Q 007862 168 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGIPTV 225 (587)
Q Consensus 168 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~i~~~~~w~~~f~i~~~ 225 (587)
+.+.|.+|+++ |+++.+++....++|. .++|.+++++.+..||+..++....
T Consensus 128 ~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 128 VWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 88889888754 9999999999999996 6899999999888897655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-20 Score=198.59 Aligned_cols=180 Identities=11% Similarity=0.093 Sum_probs=132.5
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCChhhHHHHH-----HHHHHHHHHHhhhhHHHhhccccch
Q 007862 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEY--HMNQTSAANIL-----NIWGGVTNFAPLLGAFISDTYIGRF 84 (587)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--~~s~~~~~~i~-----~~~~~~~~~~~~~~G~laD~~~Gr~ 84 (587)
.+.+||.........++|...........+.++.+++ +.++.+ +++. ++..++..++.++.|+++|| +|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr 94 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRK 94 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccH
Confidence 3556666666666777776666654445555677776 677663 5443 23344566788889999999 5999
Q ss_pred hhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccc
Q 007862 85 KTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRP 164 (587)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 164 (587)
+++.++.+++.+ ++++++++.++.+. .......++..|+++|++.|+..|
T Consensus 95 ~~l~~~~~~~~~------------~~~~~~~~~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~ 144 (438)
T PRK09952 95 RMLMLTVWMMGI------------ATALIGLLPSFSTI------------------GWWAPVLLVTLRAIQGFAVGGEWG 144 (438)
T ss_pred HHHHHHHHHHHH------------HHHHHhcCCcHHHH------------------HHHHHHHHHHHHHHHHhhhcccHH
Confidence 999999999999 88887776531100 000123588899999999999999
Q ss_pred cccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc--------cccchhhHHHHHHHHHHH
Q 007862 165 CSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIG 229 (587)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~--------~~~~w~~~f~i~~~~~~~ 229 (587)
++..++.|.+|+++ |+...+....+..+|..++..+...+. ..+|||+.|++.++..++
T Consensus 145 ~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 145 GAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999855 898888888888999888877766554 357999999987765443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=197.59 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=144.1
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|..+......+......+...+.++ .+.+++|.|.++.+++.+++.++..++++++|+++|| +|||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence 3445555555555555565555554 5688999999999999999999999999999999999 5999999999999999
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++.+++. +++.+++.|++.|++.|...+....++.|.+|+
T Consensus 81 ------------~~~l~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 122 (382)
T PRK10091 81 ------------GNAMFTLSS--------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP 122 (382)
T ss_pred ------------HHHHHHHhC--------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh
Confidence 887777655 778899999999999999988888888998887
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
++ |++.++.+..+.++|..++|.+++++.+..+||+.|.+.++..++..+.
T Consensus 123 ~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 123 GK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 44 8899999999999999999999999999899999999987766555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=197.49 Aligned_cols=174 Identities=11% Similarity=0.112 Sum_probs=141.7
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+..|+.+.......+....... ......+++.+++|.+..+.+++.++..++..++.++.|+++|| +|||+++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHH
Confidence 3445544444444444444443 44455667788999999999999999999999999999999999 599999999998
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.++..++. +.+.+++.|++.|++.+...+...+++.|
T Consensus 91 ~~~~------------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 132 (398)
T TIGR00895 91 LFSV------------FTLLCALAT--------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSE 132 (398)
T ss_pred HHHH------------HHHHHHHcc--------------------------chHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 8888 766655543 66778999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
.+|+++ |+++++++....++|..+++.+++++.+..+|++.|++.++...+..+
T Consensus 133 ~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 133 YAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred HcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 999754 999999999999999999999999999999999999887544443333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=205.09 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=119.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCC
Q 007862 49 HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCD 128 (587)
Q Consensus 49 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 128 (587)
+.++.+.+++.+.+.++..++.+++|+++|| +|||+++.++.+++.+ +.++.+++..
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v------------~~~~~~~~~~---------- 108 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMII------------ATVASGLSPG---------- 108 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH------------HHHHHHHccC----------
Confidence 4566778899999999999999999999999 5999999999999888 7765555431
Q ss_pred CCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhh
Q 007862 129 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 208 (587)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 208 (587)
..+..+...++++|+++|++.|+..+....+++|.+|+++ |+++.++.+....+|..+++.++.
T Consensus 109 ----------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 109 ----------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred ----------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011236789999999999999999999999999999865 999999999999999999988876
Q ss_pred hccc-----------------------ccchhhHHHHHHHHHHHHHHH
Q 007862 209 YIQD-----------------------SVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 209 ~i~~-----------------------~~~w~~~f~i~~~~~~~~~~~ 233 (587)
.+.. .++||+.|.+.++..++.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 5421 247999998877766555444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=198.21 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=135.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.|.++.+++..++..++...+.+.++.|+. ++|.|..++|++.+++.++..+++++.|+++|| +||||++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345788888888888888878788887765 789999999999999999999999999999999 599999999999999
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.+..+++. +++.+++.|+++|++.+...|...+.+.|..+
T Consensus 83 ~------------~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 124 (381)
T PRK03633 83 A------------GCAGLGLMV--------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGT 124 (381)
T ss_pred H------------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 777666644 67889999999999999998888887888877
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhh
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVI 218 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~ 218 (587)
+++ |++.++++....++|..+||.+++.+.+...|..
T Consensus 125 ~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 125 SRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 644 9999999999999999999999999887643333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=208.46 Aligned_cols=147 Identities=12% Similarity=0.155 Sum_probs=128.0
Q ss_pred HHHHHhhCCC---hhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeecc
Q 007862 42 VYLLKEYHMN---QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAW 118 (587)
Q Consensus 42 ~yl~~~~~~s---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 118 (587)
.-+.+|+|++ ..+.+++.+++.++..++.++.|+++|| +|||++++++.++..+ +.++.+++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i------------~~~~~~~~~- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAV------------SGVLTAFSP- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHH------------HHHHHHHcc-
Confidence 3467899999 9999999999999999999999999999 5999999999999888 776666654
Q ss_pred CCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHH
Q 007862 119 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 198 (587)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 198 (587)
+++.+++.|++.|++.++..++...++.|.+|+++ |+.+.++......+
T Consensus 179 -------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~ 227 (505)
T TIGR00898 179 -------------------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSL 227 (505)
T ss_pred -------------------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999855 99999999899999
Q ss_pred HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 199 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 199 g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
|.++++.++..+.+ ||+.|++.++..++..+..++
T Consensus 228 g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 228 GLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 99999998877654 999999887766665555433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=204.53 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=142.5
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+.+|+.+..+....++..+... ....+.+++.+++|.|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFV-LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 3455555555555555555554 44455567889999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.+..+++. +.+.+++.|++.|++.++..++...++.|
T Consensus 94 ~~~~------------~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 135 (496)
T PRK03893 94 LFSV------------GTLACGFAP--------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIE 135 (496)
T ss_pred HHHH------------HHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 777766654 67889999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMI 228 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~ 228 (587)
.+|+++ |++++++++...++|..++|.+.+++.+.++||+.|++..+..+
T Consensus 136 ~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 136 SWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999754 99999999999999999999999999999999999987554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-20 Score=197.43 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=130.7
Q ss_pred HHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCC
Q 007862 43 YLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQL 122 (587)
Q Consensus 43 yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 122 (587)
.+.+++|.+..+.++..+++.++..++++++|+++|| +||||+++++.+++.+ +.+++.++.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~------------~~~~~~~a~----- 102 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTL------------ACAATLFTT----- 102 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHH------------HHHHHHHcC-----
Confidence 4778999999999999999999999999999999999 5999999999999988 887776654
Q ss_pred CCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q 007862 123 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 202 (587)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 202 (587)
+...++++|+++|++.+...+....++.|.+|+++ |++.++++....++|..+
T Consensus 103 ---------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 103 ---------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPII 155 (413)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 67889999999999998777777788889998754 889999999999999999
Q ss_pred HhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 203 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 203 ~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
||.+++++.+..|||+.|++.++..+++++..+
T Consensus 156 g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 156 GPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888999999998877666655433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=205.97 Aligned_cols=184 Identities=12% Similarity=0.144 Sum_probs=164.7
Q ss_pred ccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhH
Q 007862 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 89 (587)
.+.+..++.+..+.+.+++++..=|.+-. ...-+++.+|.+++..|.+...+.+...++.|++|+++||| .||+++.+
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~v 103 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAV 103 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEee
Confidence 46677778888888888888888886655 44467888999999999999999999999999999999996 99999999
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
|..++.+ ++++.+++. +++.+++.|.+.|+|++.+.|.++++
T Consensus 104 G~~iW~~------------Av~~~~fs~--------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~ 145 (493)
T KOG1330|consen 104 GIFIWTL------------AVFASGFSN--------------------------HFWQVLLCRGFVGIGEASYSPIAPSL 145 (493)
T ss_pred HHHHHHH------------HHHHHHHHH--------------------------HHHHHHHHHHHhccchhhhcccchhH
Confidence 9999999 988888875 88999999999999999999999999
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhccc
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
++|.||+.+ |++.++++|+..++|..+|.+++.++.+..+ |||+|...+++.++..++.++..+
T Consensus 146 IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 146 IADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 999999876 9999999999999999999999999988766 999999999888877777655444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=202.69 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=128.1
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCC
Q 007862 47 EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK 126 (587)
Q Consensus 47 ~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 126 (587)
++|++.++.|++.+++.++..++++++|+++|| +|||+++.++.++..+ +.++..++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~------------~~~~~~~~~~-------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSV------------ISIVIPWAAG-------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHH------------HHHHHHHHHH--------
Confidence 789999999999999999999999999999999 5999999999998888 6655443321
Q ss_pred CCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhh
Q 007862 127 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 206 (587)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 206 (587)
.+...+++.|+++|++.++..|....++.|++|+++ |+++.++...+.++|..+++.+
T Consensus 129 ----------------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l 186 (465)
T TIGR00894 129 ----------------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPI 186 (465)
T ss_pred ----------------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 145678999999999999999999999999999855 9999999999999999999999
Q ss_pred hhhccccc-chhhHHHHHHHHHHHHHHHHHh
Q 007862 207 LVYIQDSV-SWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 207 ~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++++.+.. +||+.|++.++..++..++++.
T Consensus 187 ~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 187 SGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 99999884 9999999988876666555444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=193.98 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=144.7
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHH
Q 007862 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (587)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 91 (587)
+++++|..+.......+...+.....+.+ +++.+++|.|+.+.+++.+++.+...++++++|+++|| +||||++.++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~ 80 (394)
T PRK11652 3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGM 80 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHH
Confidence 44577877777777777666555444444 45678999999999999999999999999999999999 59999999999
Q ss_pred HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 92 IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
++..+ +.+...++. +.+.+++.|++.|++.+...+....+..
T Consensus 81 ~~~~~------------~~~~~~~~~--------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 122 (394)
T PRK11652 81 SIFIL------------GTLVALFAH--------------------------SLTVLIAASAIQGLGTGVGGVMARTLPR 122 (394)
T ss_pred HHHHH------------HHHHHHHHc--------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 98888 766655543 6778999999999999988888888888
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
|.+++++ ++++.++...+..++..++|.+++++.+..+||+.|++.++..++..++
T Consensus 123 ~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 123 DLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 8887643 8888899889999999999999999998899999999877665544333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=203.55 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=131.2
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.+.......++..+..+... .+.+++.+++|+|.++.+++.+.+.++..++++++|+++|| +|||+++.++.+++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 344444444444444444443 33457789999999999999999999999999999999999 5999999999998888
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++.+++. +...+++.|+++|++.+...+ ...+++|++|+
T Consensus 114 ------------~~~~~~~~~--------------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~ 154 (476)
T PLN00028 114 ------------AVFCMSLVS--------------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG 154 (476)
T ss_pred ------------HHHHHHHhc--------------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh
Confidence 776666654 567788899999999887544 45578899997
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc----c-----ccchhhHHHHHHHHHHHHHHHHHh
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ----D-----SVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~----~-----~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++ |+++.++.....++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 155 ~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 155 KI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55 999999988878888887776665442 1 258999999988776655544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=193.81 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=133.8
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.++.++...++..++.......++. +.+++|.++.+.+++.+++.+...++.+++|+++|| +||||+++++.+++.+
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~- 80 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLL- 80 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHH-
Confidence 4556666677777765555444444 478999999999999999999999999999999999 5999999999999888
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.+.+.++. + .++.|+++|++.++..|+..+++.|.+|++
T Consensus 81 -----------~~~~~~~~~--------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~ 120 (393)
T PRK11195 81 -----------GCLLMLFGI--------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGE 120 (393)
T ss_pred -----------HHHHHHHHH--------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 665544432 2 278899999999999999999999999985
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHH
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 230 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~ 230 (587)
+ |+++.++.....++|..+||.++|++.+. .|+..+.+.....+++
T Consensus 121 ~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 121 K------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4 99999999999999999999999999874 4777777665544433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=191.38 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhccccchhhhh-H
Q 007862 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTIT-F 89 (587)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~-~ 89 (587)
.+..-+..+..+...++.+++...+.+.++.|+.+++|.|.++.|++.+.... ...++++++|+ +|| +||||.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~ 87 (393)
T PRK15011 10 AKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVF 87 (393)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHH
Confidence 33334455777788999999999899999999999999999999999876655 55566666666 999 59998765 4
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
+.++..+ +..+.+++. +++.+++.+.+.+...+...|....+
T Consensus 88 ~~~~~~~------------~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 129 (393)
T PRK15011 88 CCLLGVL------------ACTLFAWNR--------------------------NYFVLLFVGVFLSSFGSTANPQMFAL 129 (393)
T ss_pred HHHHHHH------------HHHHHHHhh--------------------------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4454445 444444433 45555444444443444667777777
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
..|..++++ +..+.+.++.....++|..++|.+++++.+.+|||..|++.++..++..+..+.
T Consensus 130 ~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 130 AREHADKTG----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHhhhcc----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 777665422 122344578888999999999999999999899999999887766655554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-20 Score=197.57 Aligned_cols=392 Identities=10% Similarity=0.028 Sum_probs=224.9
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+..+......++..+++....++++.|+++++|+|..+.+++.+++.++..+++++.|+++|| +||||+++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 355666677778888888889999999999999999999999999999999999999999999 5999999887665554
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+..........+ ........+..+.++..|...+...+...++.++
T Consensus 89 ------------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (420)
T PRK09528 89 ------------LFGPFFIYVFAP----------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER 134 (420)
T ss_pred ------------HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 322111100000 0000112222333333333333333333333321
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
. .++++..++..+...++|..++|.+++++.+ .+|++.|++.+++.++.+++.++.+++.+++ ++.+
T Consensus 135 ~----~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------- 201 (420)
T PRK09528 135 V----SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVA------- 201 (420)
T ss_pred H----HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhc-------
Confidence 1 1236778888888899999999999999876 5899999988777666655554433321110 0000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
++.+ ++ . +.....+..... . .+
T Consensus 202 ------~~~~---~~---~---------------------~~~~~~~~~~~l------------------------~-~~ 223 (420)
T PRK09528 202 ------NALG---AN---A---------------------SAVSLKDALALL------------------------K-LP 223 (420)
T ss_pred ------cchh---cc---c---------------------ccccHHHHHHHc------------------------c-CC
Confidence 0000 00 0 000000000000 0 01
Q ss_pred hhhhhhHHHHHHHHHH-hhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 337 CLIKIIPIWAAGIISL-TSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
.++............+ ....+.+.+..... .+...+ . ...+.+..++.+...+..++..++ .||+++|
T Consensus 224 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-- 292 (420)
T PRK09528 224 KFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQG--T-RVFGYLNSFQVFLEALIMFFAPFI----INRIGAK-- 292 (420)
T ss_pred CeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcc--h-HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcc--
Confidence 1111111111111111 11112222211110 011110 0 011233344444555555555544 7776543
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
+.+..+.++.++++...++. .+.++++...++.+++.....+...++..+..|++.+++.
T Consensus 293 -----~~~~~~~~l~~~~~~l~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~ 352 (420)
T PRK09528 293 -----NALLLAGTIMAVRIIGSGFA---------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI 352 (420)
T ss_pred -----hhhHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence 44566666666666555532 2455666667778888888888888999999999999987
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007862 496 NSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 496 ~gl-~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~ 561 (587)
.+. +++...+|..+++.+.+.+.+.. ++...|...+++.++..++.++..
T Consensus 353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 353 YLVGFQFAKQLGAVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHh
Confidence 655 56778899999999888887532 345667777777766665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=193.73 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
......+++.+++|.|..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+ +.++..+
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~------------~~~~~~~ 79 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAI------------VNLFFGF 79 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHH------------HHHHHHH
Confidence 33445568899999999999999999999999999999999999 5999999999999888 7777666
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
+. +.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++....
T Consensus 80 ~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 127 (379)
T TIGR00881 80 ST--------------------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCS 127 (379)
T ss_pred hh--------------------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhcc
Confidence 54 67889999999999999999999999999999755 99999999999
Q ss_pred HHHHHHHHh-hhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 196 FTVVILITQ-TVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 196 ~~~g~~i~~-~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
.++|..++| .+++.+.+..+|++.|++.+++.++..++.+
T Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 128 HNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred chhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 999999999 5777777788999999887766555444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=198.83 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=127.3
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeec
Q 007862 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTA 117 (587)
Q Consensus 38 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 117 (587)
....+++++ .|+|+++.+++.+++.++..++++++|+++|| +|||+++.++.++..+ +.+..++..
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~------------~~~~~~~~~ 112 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAA------------VMLLMGFVP 112 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHH------------HHHHHhccc
Confidence 444567775 59999999999999999999999999999999 5999999999888888 666544432
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHH
Q 007862 118 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFT 197 (587)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (587)
... .+...+.+.|++.|++.|...+.....+.|++|+++ |++++++++...+
T Consensus 113 ~~~----------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~ 164 (438)
T TIGR00712 113 WAT----------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHN 164 (438)
T ss_pred ccc----------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHH
Confidence 111 155677889999999999999988999999999855 9999999999999
Q ss_pred HHHHHHhhhhhhcc-cccchhhHHHHHHHHHHHHHHHHHh
Q 007862 198 VVILITQTVLVYIQ-DSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 198 ~g~~i~~~~~~~i~-~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+|..+++.+.+... +..+||+.|++.++..++..+..++
T Consensus 165 ~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 165 IGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876544 4578999999987776665444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=194.54 Aligned_cols=173 Identities=12% Similarity=0.118 Sum_probs=125.0
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHH-HHHHHH-----HHHHhhhhHHHhhccccchhhhh
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANIL-NIWGGV-----TNFAPLLGAFISDTYIGRFKTIT 88 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~-~~~~~~-----~~~~~~~~G~laD~~~Gr~~~~~ 88 (587)
+|+.........+++.+... ......+.+.++++.++++.+... +....+ ..+++++.|+++|| +||||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~ 90 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLI 90 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHH
Confidence 34444444454555544444 345566688999999888765443 222222 23678899999999 59999999
Q ss_pred HHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccc
Q 007862 89 FASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIP 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 168 (587)
.+.+++.+ +.++++++.++..+ .......++++|+++|++.|+..|+...
T Consensus 91 ~~~~~~~~------------~~~l~~~~~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 140 (434)
T PRK15075 91 VTLSIMAS------------GTLLIAFVPGYATI------------------GLAAPLLVLLGRLLQGFSAGVELGGVSV 140 (434)
T ss_pred HHHHHHHH------------HHHHHHhCCcHHHH------------------HHHHHHHHHHHHHHhhccccccHHHHHH
Confidence 99999999 88887776521100 0000125789999999999999999999
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhc--------ccccchhhHHHHHHH
Q 007862 169 FGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSVSWVIGFGIPTV 225 (587)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i--------~~~~~w~~~f~i~~~ 225 (587)
+++|++|+++ |++..+++....++|..+++.+++.+ .+.+|||+.|++..+
T Consensus 141 ~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 141 YLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 9999999865 99999998888888888877777665 256899999987543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=192.44 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHHHhhhhHHH---HHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 20 PYILGNETFERLATIGLLAN---FMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~---~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.++...++-..++|-+--+ ..+++.++.++|.+|.|++.+++++++.++-.+.|.++|| .+.|+.+-+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHH
Confidence 77788888888888876555 4588999999999999999999999999999999999999 5999999999999999
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+++++++ +...+.+.-.+.|+..|.-.|.+..+++.+|++
T Consensus 107 ------------~nil~Gfs~--------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr 148 (448)
T COG2271 107 ------------VNILFGFSP--------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR 148 (448)
T ss_pred ------------HHHHHhhhh--------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence 888888876 778889999999999999999999999999999
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhh--hhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVL--VYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~--~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+| ||+..++..+.-|+|+++.|.+. +++.++++||..|++|++..++..+..++
T Consensus 149 ~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 149 KE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred cc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999999 99999999999999999876665554444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=189.36 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=133.6
Q ss_pred HHHHhhhhHHHHHH--HHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhccccccc
Q 007862 29 ERLATIGLLANFMV--YLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQ 106 (587)
Q Consensus 29 ~~~~~~~~~~~~~~--yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~ 106 (587)
..+++++.....|. .+++++|.|+++.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~---------- 83 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFAL---------- 83 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHH----------
Confidence 33444443344443 3788999999999999999999999999999999999 5999999999988888
Q ss_pred ccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchh
Q 007862 107 GKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 186 (587)
Q Consensus 107 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (587)
+.+...++. +.+.+++.|+++|++.+...+...+++.|.+|+++ ++
T Consensus 84 --~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 129 (401)
T PRK11043 84 --GSLGMLWVE--------------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------AN 129 (401)
T ss_pred --HHHHHHHhc--------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HH
Confidence 776655544 67788999999999998888888889999998744 77
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 187 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 187 ~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
+.++......+++..++|.+++++.+..+||+.|++..+..++..++.+
T Consensus 130 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 130 RVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999987776665554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=185.27 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
..+...+....++...... .+.+.+++|.|..+.+++.+++.++..+++++.|+++|| +||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i---- 80 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFII---- 80 (392)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHH----
Confidence 3445555555555544444 445678899999999999999999999999999999999 5999999999999888
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+.+....+. +...+++.|+++|++.+...+...+++.|.+|+++
T Consensus 81 --------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~-- 124 (392)
T PRK10473 81 --------ASLLCSLAE--------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR-- 124 (392)
T ss_pred --------HHHHHHHhC--------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH--
Confidence 776655543 56778889999999999999999999999998755
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
|+++.++.+...++|..++|.+++.+.+..+|++.|++.++..++..++.
T Consensus 125 ----r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 125 ----RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999998776655554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=186.91 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
..+.++.+ .+++|.|..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+ +.+.+.+
T Consensus 10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i------------~~~~~~~ 75 (377)
T PRK11102 10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFAL------------AAVACAL 75 (377)
T ss_pred HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHH------------HHHHHHH
Confidence 34555554 56899999999999999999999999999999999 5999999999999888 7766655
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
+. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 76 ~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 123 (377)
T PRK11102 76 AQ--------------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLV 123 (377)
T ss_pred Hc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHH
Confidence 44 66778999999999999999999999999998755 99999999999
Q ss_pred HHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 196 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
.++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 124 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 124 MTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998999999998777666554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=185.31 Aligned_cols=389 Identities=11% Similarity=0.033 Sum_probs=229.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|..|......++...++....++++.|+++++|+|..+.+++.++..++..+++++.|+++|| +||||.++.+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 356777788888888888899999999999999999999999999999999999999999999 5999999987766555
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+..........+. ........+.+++++.+++.+...|....+..|..+
T Consensus 81 ------------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 129 (396)
T TIGR00882 81 ------------LFAPFFIYVFGPL------------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR- 129 (396)
T ss_pred ------------HHHHHHHHHhhhH------------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-
Confidence 3322111000000 000022345666788888888888877766655322
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
+++..++......++|.+++|.+++.+.+ .+|+..|++.+++.++..++.+..+++. ++++...
T Consensus 130 -------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---- 193 (396)
T TIGR00882 130 -------NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA---- 193 (396)
T ss_pred -------hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh----
Confidence 24567778888889999999999998865 5999999988777666554443322211 1100000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+ ..+.+. . .+ +..+...+. .+ |
T Consensus 194 -------~-~~~~~~---~--------------------~~--~~~~~~~~l------------------------~~-~ 215 (396)
T TIGR00882 194 -------N-ALGANA---S--------------------AF--SLKLALELF------------------------RQ-R 215 (396)
T ss_pred -------c-cccccc---C--------------------CC--CHHHHHHHH------------------------cC-C
Confidence 0 000000 0 00 000000000 00 1
Q ss_pred hhhhhhHHHHH-HHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 337 CLIKIIPIWAA-GIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
.++..+..... ...+.....+...+...... +...+ . ...+....+..+...+...+..+ +.||+++|
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~--~-~~~g~~~~~~~i~~~~~~~~~g~----l~~r~g~~-- 284 (396)
T TIGR00882 216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQG--T-RVFGYVTTMGELLNALIMFCAPL----IINRIGAK-- 284 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccc--h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhccc--
Confidence 11111111111 11111111111111110000 00010 0 00122233333444444444333 36666433
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
+.+..+.++.++.+..... ..+.+++....++.+++.........++..+..|++.+++.
T Consensus 285 -----~~l~~~~~l~~l~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~ 344 (396)
T TIGR00882 285 -----NALLIAGTIMSVRIIGSSF---------------ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATI 344 (396)
T ss_pred -----hhHHHHHHHHHHHHHHHHh---------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence 4456666666665554432 13555666667778888777777777888888999998887
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 007862 496 NSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 558 (587)
Q Consensus 496 ~gl-~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~ 558 (587)
.+. ++....+|+.+++.+.+.+.+.. ++...|.+.+++.++......
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence 766 66788999999999988887532 456677777777777665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=195.36 Aligned_cols=377 Identities=14% Similarity=0.156 Sum_probs=236.0
Q ss_pred HhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCC
Q 007862 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPP 125 (587)
Q Consensus 46 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (587)
.++++|.++.+++.+.+..++.++++++|+++|| +|-|+++.++.++..+ ++++..+++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~------------~t~l~P~aa~------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISAL------------LTLLTPLAAS------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHH------------HHHHHHHHHH-------
Confidence 3688999999999999999999999999999999 5999999999999999 8888777663
Q ss_pred CCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhh
Q 007862 126 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 205 (587)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 205 (587)
.+...+++.|+++|++.|...|+...+.+.++|++| |+++.++.+.+..+|.+++-.
T Consensus 126 -----------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp 182 (466)
T KOG2532|consen 126 -----------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMP 182 (466)
T ss_pred -----------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 133468999999999999999999999999999976 999999999999999999999
Q ss_pred hhhhcccc-cchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCC
Q 007862 206 VLVYIQDS-VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP 284 (587)
Q Consensus 206 ~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 284 (587)
++|++.++ +||+.+|++.++..++..++++....+ +|++++.....+
T Consensus 183 ~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d----~P~~h~~is~~E---------------------------- 230 (466)
T KOG2532|consen 183 VSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD----SPSKHPNISEKE---------------------------- 230 (466)
T ss_pred hHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC----CcccCCCCCHHH----------------------------
Confidence 99999998 999999999998888887776654432 344333321000
Q ss_pred CccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeee
Q 007862 285 PKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVS 364 (587)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (587)
+..+.....+.........||+ .+++-.++++..+..+........+..+
T Consensus 231 -------------------l~~I~~~k~~~~~~~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 231 -------------------LKYIEKGKSEAHVKKKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred -------------------HHHHHhcccccccCCCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000011345663 2233333333222222222111122222
Q ss_pred eeccccccCCCccccC-cccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHH--HHHHHHHH
Q 007862 365 QAMKMNRHLGPKFQIP-PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS--MIVAGLVE 441 (587)
Q Consensus 365 ~~~~~~~~~~~~~~i~-~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s--~~~~~~~~ 441 (587)
++.++...+ ++.+. .+.+.++..+...+...+.+.+ .|++..|.-..+..+++.-.....+.+ ++.+++..
T Consensus 281 ~PtY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~l----sD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 281 LPTYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQL----SDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS 354 (466)
T ss_pred hhHHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence 233333322 22222 3444555555555555555555 555544322234445554444444433 44443331
Q ss_pred HhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhh-hHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 442 RGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIG-QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGV 520 (587)
Q Consensus 442 ~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~-~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~ 520 (587)
. ...++.+..+.++.+....... .+.-..+.+|++ .+..+|+.++...++..++|.+.+.+..
T Consensus 355 ~--------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-a~~l~g~~~~~~~~~~~~~P~~vg~~~~- 418 (466)
T KOG2532|consen 355 D--------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-AGFVMGIINFVGALAGFIAPLLVGIIVT- 418 (466)
T ss_pred C--------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHheeeEeC-
Confidence 1 1112222222233222222222 222222336654 8999999999999999999988877663
Q ss_pred cccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007862 521 TARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 521 ~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~ 561 (587)
. +.... ....|.+.+++.+++.++|.++.
T Consensus 419 ~--~t~~e----------W~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 419 D--NTREE----------WRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred C--CCHHH----------HHHHHHHHHHHHHHhchheeEee
Confidence 1 01223 35788888888888888777665
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=185.27 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=122.9
Q ss_pred cccccC-CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchh
Q 007862 7 QKDQKK-PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFK 85 (587)
Q Consensus 7 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~ 85 (587)
+||.+. +.+...+..+..+-+...+....... +.+.+++++|.|+.+.+++.+.+.++..+++++.|+++|| +||||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~ 92 (438)
T PRK10133 15 DKDAGQSRSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKA 92 (438)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHH
Confidence 344422 33444444444444555555444444 4455699999999999999999999999999999999999 59999
Q ss_pred hhhHHHHHHHHhhhcccccccccceEEEe---eeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccc
Q 007862 86 TITFASIAAILLAEHFVTKYQGKGMLTVT---LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGI 162 (587)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~ 162 (587)
++.++.+++.+ +.+++. .+. ++..++++|+++|+|.|..
T Consensus 93 ~l~~g~~~~~~------------~~~l~~~~~~a~--------------------------~~~~ll~~r~l~G~g~g~~ 134 (438)
T PRK10133 93 GIITGLFLYAL------------GAALFWPAAEIM--------------------------NYTLFLVGLFIIAAGLGCL 134 (438)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHhcC--------------------------CHHHHHHHHHHHHHHHHHH
Confidence 99999999999 876642 222 7788999999999999999
Q ss_pred cccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 007862 163 RPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 211 (587)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~ 211 (587)
.++..+++.|..++++ |...++.+.....+|..+++.+++.+.
T Consensus 135 ~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 135 ETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998755432 555688888888999999998876543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-18 Score=180.55 Aligned_cols=359 Identities=12% Similarity=0.028 Sum_probs=220.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhh----hHHHHHHH
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI----TFASIAAI 95 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~----~~~~~~~~ 95 (587)
+.+....++...++-...++++.|+ +++|+|.++.+++.+++.+...+++++.|.++|| +||++.. .++.++..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence 3344444555555555566777776 6789999999999999999999999999999999 5985433 33332222
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ . ....++ +++.+++.|.+++.+.+...|...++..|. +
T Consensus 85 ~------------~--~~~~~~--------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~ 123 (382)
T TIGR00902 85 A------------A--FSAGAH--------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q 123 (382)
T ss_pred H------------H--HHHhhh--------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H
Confidence 2 1 111222 678888999999999999889888876542 2
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 255 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (587)
++|++.++......++|..++|.+++++.+.+|||..|.+......+.++.+ ..+++. +++++..
T Consensus 124 -------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~---- 188 (382)
T TIGR00902 124 -------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTI---PPKDAIP---- 188 (382)
T ss_pred -------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCC---CCCcccc----
Confidence 2378899999999999999999999999999999999987655433322222 211110 0100000
Q ss_pred HHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehh
Q 007862 256 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV 335 (587)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 335 (587)
.+ +.. .. + ++. . -.. .
T Consensus 189 --------------~~---~~~----------------~~-~--~~~---~------------------------~l~-~ 204 (382)
T TIGR00902 189 --------------ED---ESQ----------------GD-S--AFI---A------------------------LLK-N 204 (382)
T ss_pred --------------cc---ccc----------------cc-h--hHH---H------------------------HHc-C
Confidence 00 000 00 0 000 0 000 1
Q ss_pred hhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCc---ccccccchhhhhhhhhchhhhhHHHhhhhhc
Q 007862 336 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVPALRKITK 412 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~ 412 (587)
|.++..+. ..........+..++.. ..... .+ .++ +....+..+..++..++.+++ .+|+
T Consensus 205 ~~~~~~l~---~~~l~~~~~~~~~~~~~---~~l~~-~g----~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~-- 267 (382)
T TIGR00902 205 PMNLRFLA---AVCLIQGAHAAYYGFSA---IYWQA-AG----ISASATGLLWGIGVLAEIIIFAFSNKL----FQNC-- 267 (382)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHH-CC----CCHhHHHHHHHHHHHHHHHHHHHhHHH----HhhC--
Confidence 11111111 11111122222222111 00111 11 122 223333444444444443333 5554
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhh
Q 007862 413 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 492 (587)
Q Consensus 413 r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~r 492 (587)
+.++.+..|.++..+.+..+... .+.+.++..-++.+++.+...+....++.+. |++.|
T Consensus 268 -----g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~ 326 (382)
T TIGR00902 268 -----SARDLLLISAIACVGRWAIIGAI---------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEI 326 (382)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHhH---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhH
Confidence 55567778888888887776643 2455566667899999999999999999988 99999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHH
Q 007862 493 SIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV 555 (587)
Q Consensus 493 g~~~gl~~-~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v 555 (587)
+++.++++ ...++|..+++.+.+.+.+.. +. ..|+..+++.+++.+
T Consensus 327 ~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 327 AKLQALYNALAMGGLIAIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHHH
Confidence 99999986 577899999999999887532 22 456777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=192.99 Aligned_cols=417 Identities=13% Similarity=0.115 Sum_probs=241.2
Q ss_pred hhHHHHHHHHHHhh-----CCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 35 GLLANFMVYLLKEY-----HMNQ--TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 35 ~~~~~~~~yl~~~~-----~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+....+..++.+.. ..+. .+.+++.+++.++..++++++|+++|+ +|||++++++.+++.+
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~i----------- 131 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLI----------- 131 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH-----------
Confidence 55555555655532 1222 345899999999999999999999999 5999999999999999
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
|.++++++. ++..++++|+++|+|.|+...+.+.+++|..|++. |+.
T Consensus 132 -G~ii~~~a~--------------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~ 178 (513)
T KOG0254|consen 132 -GAIIIALAP--------------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGT 178 (513)
T ss_pred -HHHHHHHhh--------------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHH
Confidence 999999987 78899999999999999999999999999999865 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccc-cchhhHHHHHHHHHHHHHHHHHhc--cceeeeeCCCCChhhhHHHHHHHHHHh
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILFLVG--KKLYVLVEPEGSIFSGIGQVLVAAYKK 264 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~ 264 (587)
..+.++...++|..++..++....+. ++||..+++..+..++..+.+++. .|++..+ .++ .....+ .+++
T Consensus 179 l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~--~g~-~~~a~~----~l~~ 251 (513)
T KOG0254|consen 179 LVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE--KGR-LEEAKR----SLKR 251 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--cCC-hHHHHH----HHHH
Confidence 99999999999999995555544433 589998888776655555553331 1111111 000 000000 0000
Q ss_pred -ccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhH
Q 007862 265 -RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIP 343 (587)
Q Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 343 (587)
+... .. + .....+........+. ........|+++.. ....|+....+.
T Consensus 252 l~g~~-~~---~----------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~--~~~~~~~~i~~~ 301 (513)
T KOG0254|consen 252 LRGLS-PE---D----------------------VEVELELLKIKLLVEA--EVAEGKASWGELFS--PKVRKRLIIGLL 301 (513)
T ss_pred HhCCC-Cc---c----------------------hHHHHHHHHHHHHHhh--hcccccccHHHhcC--cchHHHHHHHHH
Confidence 0000 00 0 0000000000000000 00000012222211 111222211111
Q ss_pred HHHHHHHHHhhhccccceeeeeeccccccCCCccccCc----ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCCh
Q 007862 344 IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP----GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 419 (587)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~ 419 (587)
+..++. +........+....... . +++.+. -....++.++.++.. -+.||++||
T Consensus 302 l~~fqq-----~tG~~~~~~Y~~~if~~-~--g~~~~~~~~~~~~~~v~~~~t~~~~--------~lvd~~gRr------ 359 (513)
T KOG0254|consen 302 LQLFQQ-----LTGINYVFYYSTTIFKS-A--GLKSDTFLASIILGVVNFLGTLVAT--------YLVDRFGRR------ 359 (513)
T ss_pred HHHHHH-----HhCCceEEeehHHHHHh-c--CCCCchHHHHHHHHHHHHHHHHHHH--------HHHHHhccH------
Confidence 111111 11111111111111111 1 222221 111222333333332 236666433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHH
Q 007862 420 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 499 (587)
Q Consensus 420 ~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~ 499 (587)
..+..|.+.+.+++++++........... ......+..++..+++.........|..+.+..|.+|.+.|+.+.++.
T Consensus 360 -~lll~s~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~ 436 (513)
T KOG0254|consen 360 -KLLLFGAAGMSICLVILAVVGVFALYYPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA 436 (513)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHhccCCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence 56777777777777776655432111000 011223333444445566666777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHH-HHHHHHhhhccccCccccc
Q 007862 500 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV-YFLYCARRYRYKSGIQSLE 574 (587)
Q Consensus 500 ~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v-~~~~~~~~~~~~~~~~~~~ 574 (587)
...+++.+.+-....+...... +....|..+++++.+... +++++.+|+|+++.|+.++
T Consensus 437 ~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 437 VAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 9999998888766555544211 012456777777777776 7888899999998886654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=206.09 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=127.0
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChh--hHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQT--SAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~--~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
..+.+...+...++..++..+....+..++..+++.+.+ ..+++.+++.+...++++++|+++|| +|||++++++.+
T Consensus 7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~ 85 (1146)
T PRK08633 7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKL 85 (1146)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHH
Confidence 445566666777777777766666777777777776544 46899999999999999999999999 599999999887
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+.++ +.++..+... ..+++.+++.|+++|++.+...|+..++++|
T Consensus 86 ~~~~------------~~~~~~~~~~-----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 130 (1146)
T PRK08633 86 FEVG------------LTLLIVLAYY-----------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPE 130 (1146)
T ss_pred HHHH------------HHHHHHHHHH-----------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHH
Confidence 7665 4443333211 0157889999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 213 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~ 213 (587)
.+|+++ |+++++++..+.++|.++|+.+++++.+.
T Consensus 131 ~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 131 LVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999855 99999999999999999999999998765
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=192.47 Aligned_cols=398 Identities=12% Similarity=0.057 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCC
Q 007862 55 AANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPF 134 (587)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (587)
-+.+++++.++..+++.++|+++|| +|||..++++.++..+ +.++..++...+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~------------~~~~~~~s~~~~-------------- 114 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVL------------AALLMGLSKSAP-------------- 114 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHH------------HHHHHHHHHHhh--------------
Confidence 3567889999999999999999999 5999999999999988 877777665322
Q ss_pred CcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhh-hh-ccc
Q 007862 135 GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL-VY-IQD 212 (587)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~-~~-i~~ 212 (587)
+..+++.+|++.|+..|......+.++.|..|++. ||..-....+..++|..+++.++ .. +.+
T Consensus 115 ---------~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt 179 (485)
T KOG0569|consen 115 ---------SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGT 179 (485)
T ss_pred ---------hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCC
Confidence 67899999999999999999999999999999866 99999999999999999996665 22 334
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhcc--ceeeee-CCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCcccc
Q 007862 213 SVSWVIGFGIPTVLMIGAIILFLVGK--KLYVLV-EPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 289 (587)
Q Consensus 213 ~~~w~~~f~i~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (587)
.-.|++.+..+.+..++.+++..+.. |+|... +.+....+ .++|..+-. + +++
T Consensus 180 ~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~-------~sl~~y~G~--~---~~~------------ 235 (485)
T KOG0569|consen 180 EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEAR-------KALKFYRGK--E---DVE------------ 235 (485)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHH-------HHHHHHhCC--C---cch------------
Confidence 45699999988887776666544422 222111 11100000 011110000 0 000
Q ss_pred ccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccc-cccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeecc
Q 007862 290 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWR-LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMK 368 (587)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (587)
.....+.....++ +.++.....++ .+.+.. .++.+...+.+.+ ...+....... ++ .
T Consensus 236 --------~~~e~~~~e~~~~----~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~-----~qq~sGi~ai~--~Y-s 293 (485)
T KOG0569|consen 236 --------AEIEEMLREIEEE----ELEKKKQISLRQLLKNPT--LRRPLLIGIVVSF-----AQQFSGINAIF--FY-S 293 (485)
T ss_pred --------hHHHHHHHHHHHh----ccccccCCcHHHHhcCcc--hhHHHHHHHHHHH-----HHHhcCcceeH--HH-H
Confidence 0000001111111 01111111111 111111 1111111111111 11111111111 10 0
Q ss_pred ccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 369 MNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA 448 (587)
Q Consensus 369 ~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~ 448 (587)
.+.....|+. +......|..... ...+...+...+.||++|| ..++.++.++.+..+.+..........
T Consensus 294 t~i~~~aG~~--~~~a~~an~~~g~-v~~~~t~~~~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~- 362 (485)
T KOG0569|consen 294 TSIFKTAGFT--PEEAQYANLGIGI-VNLLSTLVSPFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSF- 362 (485)
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0111100221 1111111111111 1111112222346776554 445555555555554444332211100
Q ss_pred ccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 007862 449 HLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPD 528 (587)
Q Consensus 449 ~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~ 528 (587)
....++..++....+....+....|..+-+..|++|++.|+.+++...+.+++.+++-....+.+....
T Consensus 363 ----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~------- 431 (485)
T KOG0569|consen 363 ----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI------- 431 (485)
T ss_pred ----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 001111112223333444555668888999999999999999999999999999999998888877532
Q ss_pred CccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCccc
Q 007862 529 WLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQS 572 (587)
Q Consensus 529 w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 572 (587)
+. +.|..+.+.+++..++.+...||+|+|+-++.
T Consensus 432 ---------g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 432 ---------GP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEI 465 (485)
T ss_pred ---------cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 11 57888899999999999999999999876654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=183.61 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 23 LGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
....++-.+....+.+.+.+.+.+ ++|+|.+|.+++.+++.++..++.++.|++.|| +|.|+++.++.++..+
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i----- 112 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILII----- 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH-----
Confidence 344445555555566666667665 899999999999999999999999999999999 5999999999999988
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
.++..+++..- ...++..+++.|++.|++ |+..+.....++++||+++
T Consensus 113 -------~~~~~~~a~~~---------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~--- 160 (462)
T PRK15034 113 -------PCVWLGIAVQN---------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK--- 160 (462)
T ss_pred -------HHHHHHHHHcc---------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH---
Confidence 77766654100 001778899999999998 7788999999999999855
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcc------------------cccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQ------------------DSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~------------------~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
|+++++++....|+|..+++.+...+. +..+||.++++..++.+++.++.++.
T Consensus 161 ---rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 161 ---QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998777788776666554422 13447777777666666666555553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=179.80 Aligned_cols=176 Identities=11% Similarity=0.102 Sum_probs=134.0
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-----cchhh-hh
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-----GRFKT-IT 88 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Gr~~~-~~ 88 (587)
.||..+..+...+...+..+.....++.| .++.|.+..+.+... ..... .++.+++|.++|| + ||||. ++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~-l~~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll 85 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAW-MTVENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLL 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHH
Confidence 44556666677776766667666666766 445699999988862 22222 3688999999999 7 99986 55
Q ss_pred HHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccc
Q 007862 89 FASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIP 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 168 (587)
++.++..+ +...+++.. +..+.+.+...+++.+++.+...+...+
T Consensus 86 ~~~i~~~~------------~~~~~a~~~-----------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a 130 (491)
T PRK11010 86 ATQLLLLV------------AIAAMGFLE-----------------------PGTQLRWLAALAVVIAFCSASQDIVFDA 130 (491)
T ss_pred HHHHHHHH------------HHHHHHHcC-----------------------CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666656 554444432 1126778888999999999999999999
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-ccchhhHHHHHHHHHHHHHHHHH
Q 007862 169 FGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
+..|++|+++ |+++.++...+.++|..+++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus 131 ~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 131 WKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999755 9999999999999999999999999988 57999999998776665544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=177.35 Aligned_cols=394 Identities=12% Similarity=0.056 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccc-hhhhhHHHHHHHHhhh
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR-FKTITFASIAAILLAE 99 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~~~~~~~~~~~~~ 99 (587)
.+-...++..+++-...++++.|+++++|+|..+.|++.+++.++..++++++|+++|| +|| |+++.++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~--- 81 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGAL--- 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHH---
Confidence 34455556656666667999999999999999999999999999999999999999999 565 7788877777766
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC-
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT- 178 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~- 178 (587)
+.....+.. ++..+++.|++.+++.+...|.+.+...+...+..
T Consensus 82 ---------~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~ 126 (418)
T TIGR00889 82 ---------LLFFAAQVT--------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGL 126 (418)
T ss_pred ---------HHHHHHHhc--------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCC
Confidence 554444433 56667888888888877777666554322221000
Q ss_pred -cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHH
Q 007862 179 -DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQV 257 (587)
Q Consensus 179 -~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (587)
..+...|.+.++ ++|.+++|.+++.+.....|+. |++.++..++.+++.+. .++.++ +++++....
T Consensus 127 ~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~-~~e~~~--~~~~~~~~~--- 193 (418)
T TIGR00889 127 DVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALT-LPDIPV--AKSTAKMSI--- 193 (418)
T ss_pred CchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhc-CCCCCC--CccccccCH---
Confidence 000011444444 4788888888888754434543 55555544444433222 221110 000000000
Q ss_pred HHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhh
Q 007862 258 LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC 337 (587)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 337 (587)
+ +..+. +..... .+.+.
T Consensus 194 -----~---------------------------------~~~~~-~~~~~~------------------------k~~~~ 210 (418)
T TIGR00889 194 -----K---------------------------------VMLGL-DAFILF------------------------KNKRM 210 (418)
T ss_pred -----H---------------------------------HHhhh-hHHHHh------------------------cCCCe
Confidence 0 00000 000000 00111
Q ss_pred hhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccc-cCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCC
Q 007862 338 LIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 416 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~ 416 (587)
....+..+...............+.. . ...+...+.++. ...+....+..+..++...+.+++ .||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~g----- 279 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLH-E-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFF----LKRFG----- 279 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHH-H-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhC-----
Confidence 01111111111111111110000100 0 000000000000 011333344444555555554444 66663
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHH
Q 007862 417 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 496 (587)
Q Consensus 417 ~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~ 496 (587)
+++.+..+.++.++++........ ...+.+.++...++.+++++...+....++.+.+|++.|+++.
T Consensus 280 --~r~~l~~~~~~~~v~~~l~~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~ 346 (418)
T TIGR00889 280 --IKKVMLLSLVAWALRFGFFAYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQ 346 (418)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 345677777777776655543210 0112233455678889999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 497 SLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 497 gl~~-~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
|+.+ ..+.+|+.+++.+.+.+.+.....+. .++...|...+++.++..+.++++.++
T Consensus 347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9997 67889999999999988764311100 135667778888878777777777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=174.40 Aligned_cols=156 Identities=12% Similarity=-0.009 Sum_probs=119.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccch----hhhhHHHHHHHHhhhcc
Q 007862 26 ETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF----KTITFASIAAILLAEHF 101 (587)
Q Consensus 26 ~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~----~~~~~~~~~~~~~~~~~ 101 (587)
-++..+++....++++.|+ +++|.|..+.|++.+++.+...++++++|.++|| +||+ +.+.++.++..+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~----- 85 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFAV----- 85 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHHH-----
Confidence 4444455566677788887 5689999999999999999999999999999999 5994 333333222222
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
.. .... .+.+.++..|.+.+++.+...|...++..|..+
T Consensus 86 -------~~---~~~~-------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~------ 124 (382)
T PRK11128 86 -------AF---WFGA-------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK------ 124 (382)
T ss_pred -------HH---HHhc-------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh------
Confidence 11 1111 167888889999999999999988887776522
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 231 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 231 (587)
+|++.++......++|..+||.+++++.+.+|||..|++.++..++.+
T Consensus 125 --~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 125 --QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred --hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 277888888888999999999999999999999999988776544443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=202.32 Aligned_cols=144 Identities=11% Similarity=0.018 Sum_probs=110.0
Q ss_pred HHhhCCCh-hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH--HHHhhhcccccccccceEEEeeeccCCC
Q 007862 45 LKEYHMNQ-TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA--AILLAEHFVTKYQGKGMLTVTLTAWLPQ 121 (587)
Q Consensus 45 ~~~~~~s~-~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 121 (587)
..+.+.+. ...++..+++.+...++.+++|+++|| +|||+++.....+ ... +....++..
T Consensus 43 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~------------~~~~~~~~~---- 105 (1140)
T PRK06814 43 SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIA------------ALAIYGFHL---- 105 (1140)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHH------------HHHHHHHHH----
Confidence 33444333 346778888999999999999999999 5999986432221 111 111111111
Q ss_pred CCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHH
Q 007862 122 LHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL 201 (587)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 201 (587)
.+++.+++.|+++|++.++..|+..+++.|++++++ |+++.++..++.++|.+
T Consensus 106 ---------------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 106 ---------------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAIL 158 (1140)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHH
Confidence 167889999999999999999999999999999865 99999999999999999
Q ss_pred HHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 202 ITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 202 i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
+||.++|++.+..+|++.|.+..+..+++++
T Consensus 159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 159 LGTIIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998554444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=175.80 Aligned_cols=392 Identities=13% Similarity=0.068 Sum_probs=252.8
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
.|+.++|+++... ..+.-.+..+.+.+.+.+++.+++|+|+.|.+++..+-.+...+..++-|++.|| +|.|++.+++
T Consensus 8 ~k~~~~~~L~~S~-~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s 85 (417)
T COG2223 8 GKRIARRNLWLST-LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILS 85 (417)
T ss_pred cccchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHH
Confidence 4556666665544 4445556777788889999999999999999999999999999999999999999 6999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.++..+ -.+.++++...| +.+.+++.+++.|++.| ..++..+++
T Consensus 86 ~~l~~I------------P~~~~~~a~~~~-----------------------~~~~ll~~gll~G~~Ga-sFav~m~~~ 129 (417)
T COG2223 86 MLLLLI------------PCLGLAFAVTYP-----------------------STWQLLVIGLLLGLAGA-SFAVGMPNA 129 (417)
T ss_pred HHHHHH------------HHHHHHHHccCC-----------------------chHHHHHHHHHHhcccc-eehcccccc
Confidence 999888 777777666433 44678899999998854 577899999
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc---hhhHHHHHHHHHHHHHHHHHhccceeeeeCCC
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPE 247 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
+.+||++. +|.+.+++. ..|+|..+.+.+++.+....+ |+..-.+..+.++++.+++++..++....++.
T Consensus 130 s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~ 202 (417)
T COG2223 130 SFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS 202 (417)
T ss_pred cccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 99999855 999999999 899999999999999999988 99999999988888877777755432211111
Q ss_pred CChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccc
Q 007862 248 GSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLC 327 (587)
Q Consensus 248 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~ 327 (587)
.++.. + . .++.
T Consensus 203 ~~~~~-----------------~--------------------------~---~~~~----------------------- 213 (417)
T COG2223 203 VKPQL-----------------P--------------------------A---QLKA----------------------- 213 (417)
T ss_pred ccccc-----------------h--------------------------h---HHHH-----------------------
Confidence 00000 0 0 0000
Q ss_pred cceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccc-cCcccccccchhhhhhhhhchhhhhHHH
Q 007862 328 SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPA 406 (587)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~i~~~l~~~l~~~l~~~l 406 (587)
+...|..+..+.+.......++.++-..+ +....+.+ .. ...+.......+...+..|+.+++
T Consensus 214 ----v~~~~~~W~lsllY~~tFG~Fvgfs~~l~------~~~~~~fg--~~~~~Ag~~a~~f~~~g~l~Rp~GG~L---- 277 (417)
T COG2223 214 ----VFSNKDTWLLSLLYFATFGGFVGFSAYLP------MYLVTQFG--LSPVTAGLIAFLFPLIGALARPLGGWL---- 277 (417)
T ss_pred ----HhcCcchHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcC--CChhhHHHHHHHHHHHHHHHHhccchh----
Confidence 00011222222222222222222221111 11112221 11 112344445556666677776666
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 007862 407 LRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQ 486 (587)
Q Consensus 407 ~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~ 486 (587)
.||++++ +...+.++.++++....+...... ....+....+..++...+..++-.......+...
T Consensus 278 sDR~Gg~-------rv~~~~f~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~i 342 (417)
T COG2223 278 SDRIGGR-------RVTLAVFVGMALAAALLSLFLTGF--------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVI 342 (417)
T ss_pred hhhccch-------hHHHHHHHHHHHHHHHHHcccccc--------ccCcchHHHHHHHHHHHHHhccCcchheeechHH
Confidence 6666443 445555555555555554332110 0112333333334444444444444455555555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 487 FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 487 ~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
+|+ +.|...|+......+|++.-+...+...+.| +.+...|+++..+.+++.+..+.+..|
T Consensus 343 f~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 343 FPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 5788889988888888888777777776654 235678888888888888877666554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-17 Score=174.07 Aligned_cols=354 Identities=9% Similarity=0.077 Sum_probs=211.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchh-hhhHHHHHHHHhhhcccc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFK-TITFASIAAILLAEHFVT 103 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~-~~~~~~~~~~~~~~~~~~ 103 (587)
.....+..+..+++.|+++++|+|..++|++..+..+...+..|+.|+++||. +|||| .++++.++..+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i------- 82 (437)
T TIGR00792 10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI------- 82 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH-------
Confidence 34455566677899999999999999999999999999999999999999972 48866 46667676766
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
+.+++......+ .......++..+++.+++.+...+...++..|..++. +
T Consensus 83 -----~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-----~ 132 (437)
T TIGR00792 83 -----VLVLLFTTPDFS--------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP-----R 132 (437)
T ss_pred -----HHHHHHhCCCCC--------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH-----H
Confidence 555444332111 0113456677778888888888888888888887542 2
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhhhhcc-------cccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 184 GINSFFNWYYTTFTVVILITQTVLVYIQ-------DSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 184 ~r~~~~~~~~~~~~~g~~i~~~~~~~i~-------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
+|++..++.....++|..+++.+.+.+. +..+|++.|.+.+++.++..++.+...++..++.++++
T Consensus 133 ~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------- 205 (437)
T TIGR00792 133 ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI------- 205 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-------
Confidence 4889999988888888877766654443 24689999988777766555444333332110000000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+ + +.+..+.... -.. .|
T Consensus 206 --------------~----~---------------------~~~~~~~~~~-----------------------l~~-~~ 222 (437)
T TIGR00792 206 --------------E----K---------------------KLSLKQIFKA-----------------------LFK-ND 222 (437)
T ss_pred --------------c----c---------------------CCCHHHHHHH-----------------------HhC-CH
Confidence 0 0 0000000000 000 11
Q ss_pred hhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCC
Q 007862 337 CLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 416 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~ 416 (587)
.++..+.........+........++.... ... . ...+.+..+..+..++..++..++ .+|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-----~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g~---- 286 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYV--LGD-P-----ELFSYMGSIAIVAGLIGVLLFPRL----VKKFGR---- 286 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeee--cCC-h-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCc----
Confidence 111111111111111111111112221111 110 0 001223333445555555554444 666643
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCC-------c
Q 007862 417 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------D 489 (587)
Q Consensus 417 ~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P-------~ 489 (587)
++.+..+.++.+++.+...+. ..+.+.+....++.+++.+...+..+++..|..| +
T Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (437)
T TIGR00792 287 ---KILFAGGILLMVLGYLIFFFA--------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGV 349 (437)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCc
Confidence 345666666666665554432 1133444556677888888888888888888765 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 490 HMKSIANSLLFCSFGFASYLSSLLITIVHGVT 521 (587)
Q Consensus 490 ~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~ 521 (587)
+.+|.+.|+.++...+|..+++.+.+.+.+..
T Consensus 350 ~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 350 RAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=173.24 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=116.0
Q ss_pred HHHHHHHHhhC--CChhhHHHHHHHH--H---HHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceE
Q 007862 39 NFMVYLLKEYH--MNQTSAANILNIW--G---GVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGML 111 (587)
Q Consensus 39 ~~~~yl~~~~~--~s~~~~~~i~~~~--~---~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 111 (587)
+...++.+++. .++++.+.+.+.. . +...+++++.|+++|| +||||++.++.++..+ +.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~------------~~~ 80 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGI------------GTL 80 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHH------------HHH
Confidence 45566666654 4455555544432 2 2234678999999999 5999999999999988 777
Q ss_pred EEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhH
Q 007862 112 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (587)
+.+++.+++.. .......+++.|+++|++.+...+....++.|.+|+++ |++..++
T Consensus 81 ~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 136 (394)
T TIGR00883 81 LIGLLPSYATI------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF 136 (394)
T ss_pred HHhhCCChhhh------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence 76665521100 00012468899999999999999999999999999755 9999999
Q ss_pred HHHHHHHHHHHHhhhhhhcc--------cccchhhHHHHHHHHHHHHHH
Q 007862 192 YYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 192 ~~~~~~~g~~i~~~~~~~i~--------~~~~w~~~f~i~~~~~~~~~~ 232 (587)
......+|..+++.++..+. +.++||+.|.+..+..+++..
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999988876553 357899999887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=180.99 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=130.9
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
..+......++.....+...+.++.++++++|+|..+.+++.+++.++..++++++|+++|| +||||++.++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i- 79 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAI- 79 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH-
Confidence 34555555556666666666677768999999999999999999999999999999999999 5999999999999999
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.++++++.. +++.++.+|+++|++.+.. +...++++|.+|++
T Consensus 80 -----------~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 80 -----------PCLWAGLAVQ-------------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK 122 (366)
T ss_pred -----------HHHHHHHHhh-------------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh
Confidence 7766655430 5677889999999996654 56788999999975
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc----------ccchhhHH-HHHHHH
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD----------SVSWVIGF-GIPTVL 226 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~----------~~~w~~~f-~i~~~~ 226 (587)
+ |+++.+++....++|..+++.+++.+.. ..+||+.| .+..+.
T Consensus 123 ~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 123 I------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred h------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 5 9999999998888888888777766553 34899999 443433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=175.50 Aligned_cols=155 Identities=10% Similarity=0.104 Sum_probs=127.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
++....+.....+.+.+.+++|+|.++.+++.+++.++..++.++.|+++|| +||||+++++.++..+
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~----------- 77 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAA----------- 77 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHH-----------
Confidence 4444444445556667899999999999999999999999999999999999 5999999999988777
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.+.. ... +...+++.|++.|+|.+...+.....+.|.+++ + |++
T Consensus 78 -~~~~~-~~~--------------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~ 122 (355)
T TIGR00896 78 -GILIR-SAP--------------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGL 122 (355)
T ss_pred -HHHHH-Hhc--------------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhH
Confidence 66544 222 567788999999999999888888888888763 3 899
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccccc--chhhHHHHHHHHHHH
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQDSV--SWVIGFGIPTVLMIG 229 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~~~--~w~~~f~i~~~~~~~ 229 (587)
+++++....++|..+++.+++.+.+.. +||+.|.+.++..++
T Consensus 123 ~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 123 MTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999998887664 399998776554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=180.09 Aligned_cols=360 Identities=13% Similarity=0.051 Sum_probs=232.3
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.+..+....++.+++...-..-++-++ .++.-|+...+++..+..+-..+..+++|.++|| +.|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHH
Confidence 4556666777777777776555555454 4667889999999999999999999999999999 5999999999988766
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+.+++.... +..+.+.++..-++.|++.+...|+-.+++.|..|+
T Consensus 88 ------------~~~~L~~l~~~---------------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~ 134 (524)
T PF05977_consen 88 ------------VALLLAVLAFF---------------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK 134 (524)
T ss_pred ------------HHHHHHHHHHh---------------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 44433332210 122678888899999999999999999999999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
++ ...+.++..+..|+.-.+||.++|.+....|-.+.|.+.++..++.+.+....++... ++..+.....+
T Consensus 135 ~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~ 205 (524)
T PF05977_consen 135 ED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFS 205 (524)
T ss_pred hh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhh
Confidence 65 8899999999999999999999999998889899999988877766554443332211 11000000000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+. .+..++. . ..+
T Consensus 206 ----~l---------------------------------~~G~ryv------~------------------------~~~ 218 (524)
T PF05977_consen 206 ----AL---------------------------------REGLRYV------R------------------------SSP 218 (524)
T ss_pred ----hH---------------------------------HHHHHHH------h------------------------cch
Confidence 00 0000000 0 001
Q ss_pred hhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCC
Q 007862 337 CLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 416 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~ 416 (587)
.+...+.. ...+........... +.......+ +-....+.+.....++.+++..+..++ .+++
T Consensus 219 ~l~~~l~~---~~~~~l~~~a~~aLl---Pl~a~~~l~-~~a~~yGll~a~~gvGai~Gal~~~~l----~~~~------ 281 (524)
T PF05977_consen 219 PLRSVLLR---SFLFNLFASAVWALL---PLFARDVLG-GGASGYGLLLAAFGVGAILGALLLPRL----RRRL------ 281 (524)
T ss_pred HHHHHHHH---HHHHHHhhhHHHHhh---hHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHHh----hccc------
Confidence 11111110 111111100000111 111111111 000112333334445555554432222 2222
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHH
Q 007862 417 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 496 (587)
Q Consensus 417 ~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~ 496 (587)
+..+.+..+.++.+++++.+++. .+.+...+.+++.|++.........+...+..|+++||+.+
T Consensus 282 -~~~~lv~~~~~~~a~~~~~lal~---------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 282 -SSRRLVLLASLLFALALLLLALS---------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred -CcchhhHHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHH
Confidence 33455666777777776666543 34555666778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 497 SLLFCSFGFASYLSSLLITIVHGV 520 (587)
Q Consensus 497 gl~~~~~~lg~~l~~~l~~~v~~~ 520 (587)
|++.+....+..+|+.+.+.+.+.
T Consensus 346 si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 346 SIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988999999888887753
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=166.05 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc----ccchhhh-hHHHHHHHHhhhccccccccc
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY----IGRFKTI-TFASIAAILLAEHFVTKYQGK 108 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Gr~~~~-~~~~~~~~~~~~~~~~~~~~~ 108 (587)
+++.....+.+.+++|+|.++.++.... .....+ .+++|.++||+ +||||.+ +.+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~------------ 69 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLS------------ 69 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHH------------
Confidence 3455666677788999999999999655 344444 88999999994 3999975 556665555
Q ss_pred ceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhh
Q 007862 109 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 188 (587)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (587)
.++.+++... ..+.+.+....++.+++.+...+...+++.|.+|+++ |+++
T Consensus 70 ~~~~l~~~~~-----------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~ 120 (356)
T TIGR00901 70 LLLILSFLVP-----------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYG 120 (356)
T ss_pred HHHHHHcCCc-----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchH
Confidence 4434433321 1255666667777888888889999999999998754 9999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcccccc--------hhhHHHHHHHHHHHHHHHHH
Q 007862 189 FNWYYTTFTVVILITQTVLVYIQDSVS--------WVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 189 ~~~~~~~~~~g~~i~~~~~~~i~~~~~--------w~~~f~i~~~~~~~~~~~~~ 235 (587)
.++...+.++|.++++.+++++.+..+ ||..|++.++..+++++..+
T Consensus 121 ~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 121 STIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888777 99999998887766555444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-21 Score=207.93 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCC
Q 007862 53 TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKP 132 (587)
Q Consensus 53 ~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 132 (587)
...+++.++..++..++.+++|+++|| +|||++++++.++..+ |.++.+++...
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i------------~~~~~~~~~~~------------- 99 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMII------------GSILIAFAPSY------------- 99 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccc------------ccccccccccc-------------
Confidence 457899999999999999999999999 5999999999999999 99998887621
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc
Q 007862 133 PFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 212 (587)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~ 212 (587)
.++..+.++|+++|+|.|+..+.+..++.|..|++. |+...++......+|..++..++....+
T Consensus 100 ----------~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 100 ----------NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred ----------cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence 156779999999999999999999999999999865 9999999999999999988777654433
Q ss_pred ---ccchhhHHHHHHHHHHHHHH
Q 007862 213 ---SVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 213 ---~~~w~~~f~i~~~~~~~~~~ 232 (587)
..+||+.+.++.+..++.++
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLL 186 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 34599999887776654443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-16 Score=167.20 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
+++...+.+.+++++|+|+.+.+++.+.+.++..++.+++|++.|| +||||++.++.+++.+ +.++.
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~------------g~~l~ 85 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYAL------------GAFLF 85 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH------------HHHHH
Confidence 4566666678899999999999999999999999999999999999 5999999999999999 87664
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
..+.. ..+++.++.+|++.|+|.|...+...+++.+..|+++ |++..++..
T Consensus 86 ~~~~~-----------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (410)
T TIGR00885 86 WPAAE-----------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQ 136 (410)
T ss_pred HHHHh-----------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHH
Confidence 33221 1267889999999999999999999999999888754 888899999
Q ss_pred HHHHHHHHHHhhhhhhcccc--------------------------cchhhHHHHHHHHHHHHHHH
Q 007862 194 TTFTVVILITQTVLVYIQDS--------------------------VSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~--------------------------~~w~~~f~i~~~~~~~~~~~ 233 (587)
...++|..++|.+++.+... .+||++|.+.+++.++..++
T Consensus 137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877422 46999998777655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=161.47 Aligned_cols=152 Identities=9% Similarity=0.096 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-----cchh-hhhHHHHHHHHhhhcccccccccc
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-----GRFK-TITFASIAAILLAEHFVTKYQGKG 109 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Gr~~-~~~~~~~~~~~~~~~~~~~~~~~g 109 (587)
...-+|.|+. +.|+|.++.|++..+... .+..+++|+++|| + |||| .++++.++..+ +
T Consensus 18 ~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l------------~ 81 (402)
T PRK11902 18 TSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA------------S 81 (402)
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH------------H
Confidence 4455666665 569999999999666654 6889999999999 7 8876 67777777766 5
Q ss_pred eEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhh
Q 007862 110 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (587)
...+++.. +..+.+.++...++.++..+...|...+++.|.+|+++ |+++.
T Consensus 82 ~~~l~~~~-----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~ 132 (402)
T PRK11902 82 IAAMAFCP-----------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGA 132 (402)
T ss_pred HHHHHhcC-----------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHH
Confidence 55444432 11256667777677788889999999999999998755 99999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccc-cchhhHHHHHHHHHHHHHH
Q 007862 190 NWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 190 ~~~~~~~~~g~~i~~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~ 232 (587)
++..++.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988875 5999999987776655444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=157.60 Aligned_cols=151 Identities=10% Similarity=0.047 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchhhh-hHHHHHHHHhhh
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTI-TFASIAAILLAE 99 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~-~~~~~~~~~~~~ 99 (587)
..++..++++..+..+++.|+++.+|++..++|.+..+..+...+..++.|+++||. +||||.+ .++.+...+.
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~-- 92 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF-- 92 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH--
Confidence 455566777777778888999999999999999999999999999999999999993 3777755 4454444330
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.++....... ++......++....+.+++.+...+...++..+..++.+
T Consensus 93 ---------~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~- 142 (448)
T PRK09848 93 ---------SVLVFWVPTDW--------------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ- 142 (448)
T ss_pred ---------HHHHHhCcCCC--------------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-
Confidence 21111111000 011123334555567788888888877887777666522
Q ss_pred ccccchhhhhhHHHHH-----HHHHHHHHhhhhhhc
Q 007862 180 EGVKGINSFFNWYYTT-----FTVVILITQTVLVYI 210 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~-----~~~g~~i~~~~~~~i 210 (587)
+|.+..++..++ .+++..++|.+.+..
T Consensus 143 ----~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 143 ----SRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 366666555443 345666677666544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=161.97 Aligned_cols=435 Identities=11% Similarity=0.003 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhc---cccchhhhhHH-HHHHHHh
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDT---YIGRFKTITFA-SIAAILL 97 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~---~~Gr~~~~~~~-~~~~~~~ 97 (587)
+....+--.+++-...+++++| .+++|.+....+++..+..+...+.+|+.|+++|| .+||||.++++ .+...+
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~y-l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~- 86 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF- 86 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH-
Confidence 3333444455555566666666 47899999999999999999999999999999994 25999999886 444444
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.++++++..+........ ++ .........++.+..+.-++....++...++++|.+|++
T Consensus 87 -----------~l~ll~~~~~~~~~~~~~~-~~--------~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~ 146 (477)
T TIGR01301 87 -----------AVILIGFAADIGHLFGDNL-DK--------KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD 146 (477)
T ss_pred -----------HHHHHHhCchhhhhccccc-cc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch
Confidence 5455444332110000000 00 001112244555666667788888888899999999986
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhc--ccc-------------cchhhHHHHHHHHHHHHHHHHHhccceee
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--QDS-------------VSWVIGFGIPTVLMIGAIILFLVGKKLYV 242 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i--~~~-------------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~ 242 (587)
+ ++++.++++.....++|..+|+.++++. .+. .+.+..|.+.+++.++..++..+..|+++
T Consensus 147 ~----~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 147 A----RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 5 3357899999999999999999998865 111 15688999988877777666555444432
Q ss_pred eeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCC
Q 007862 243 LVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVN 322 (587)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (587)
..++++.+.. ...+ .+ + ......+.+..
T Consensus 223 ~~~~~~~~~~---------------~~~~---~~----------~-------~~~~~~~~~i~----------------- 250 (477)
T TIGR01301 223 LIGSDDFINS---------------EAAP---PS----------K-------HGEEAFFGELF----------------- 250 (477)
T ss_pred CCccccchhh---------------hccc---cc----------c-------cchhhhHHHHH-----------------
Confidence 1111100000 0000 00 0 00000000000
Q ss_pred ccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccc-cccCCCccccC---cccccccchhhhhhhhhc
Q 007862 323 QWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKM-NRHLGPKFQIP---PGTVGVISMITIGLWLPF 398 (587)
Q Consensus 323 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~---~~~~~~i~~i~~~l~~~l 398 (587)
+... ..-|.+.+++...++...-|..+..+.+.++-+...- +......++-. ..+....+.+... +
T Consensus 251 --~~~~----~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i 320 (477)
T TIGR01301 251 --GAFK----YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----I 320 (477)
T ss_pred --HHHH----HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----H
Confidence 0000 0012233344444444444555444444332211000 00000000000 0111122333333 3
Q ss_pred hhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcccccCC--Cccee-ehHHHHHHHHHHHHH
Q 007862 399 YDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR---RASAHLHP--MSQVS-VFWLAPQLILMGFCE 472 (587)
Q Consensus 399 ~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~---~~~~~~~~--~~~~s-~~~li~~~~l~~~ge 472 (587)
.+.++.++.+++++| +..-..+.++.++++....+..... +.....+. ..... .+..++.+.+.|+..
T Consensus 321 ~s~~l~~l~~~~g~~------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~ 394 (477)
T TIGR01301 321 TSIGMEKLCRGWGAG------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL 394 (477)
T ss_pred HHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH
Confidence 333444556666422 1233566667777776665543210 00000000 01111 245666778889999
Q ss_pred HHHhhhhHHHHHhhCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHH
Q 007862 473 AFNIIGQIEFFNKQFPD--HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLG 550 (587)
Q Consensus 473 ~~~~~~~~~~~~~~~P~--~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~ 550 (587)
+.....-++.+.+..|+ +..|..+|+.|++..+...+.+...+.+....+ ++....+.+.++..
T Consensus 395 A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--------------~~~~~~~~~~gv~~ 460 (477)
T TIGR01301 395 AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--------------GGNLPAFVVGAVAA 460 (477)
T ss_pred HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCCeeHHHHHHHHH
Confidence 99999999999999995 455999999999999999998877666443221 12235667777777
Q ss_pred HHHHHHHHHHHhhh
Q 007862 551 GLNIVYFLYCARRY 564 (587)
Q Consensus 551 ~l~~v~~~~~~~~~ 564 (587)
+++.+..++..++.
T Consensus 461 ~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 461 FVSGLLALILLPRP 474 (477)
T ss_pred HHHHHHHHHhCCCC
Confidence 78877777666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=157.17 Aligned_cols=176 Identities=10% Similarity=-0.010 Sum_probs=134.5
Q ss_pred CCCccchhHHHH-HHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcccc-----chhh
Q 007862 13 PGGWKAMPYILG-NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-----RFKT 86 (587)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----r~~~ 86 (587)
..+++..+.++. ..+.+.+. +.+...+..++.+++|+|.++.+...+...+...+-++ +|.++|| ++ ||+.
T Consensus 21 ~~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~ 97 (468)
T TIGR00788 21 SFHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWY 97 (468)
T ss_pred cCCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHH
Confidence 344555544444 55666666 66777788888889999999999999999888888766 9999999 58 7887
Q ss_pred hhHHHHHH-HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccc
Q 007862 87 ITFASIAA-ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPC 165 (587)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 165 (587)
+.++.++. .+ +...++...+ +.....+.+++.+++.+....+
T Consensus 98 l~~~~~l~~~~------------~~~~l~~~~~-------------------------~~~~~~~~~~l~~~~~a~~dv~ 140 (468)
T TIGR00788 98 LVLSGLLGSAI------------LYGLLPGKVS-------------------------SAKVAAAFIFLAALAKALYDVL 140 (468)
T ss_pred HHHHHHHHHHH------------HHHhcccccc-------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 78877766 34 4333332221 2334445788999999999999
Q ss_pred ccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 166 SIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
.-++..|..+ +++ +.++...++.|...++|..+++.++|++.+..+|+..|++.+.+.++...
T Consensus 141 ~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 141 VDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 9999999998 321 44667788888889999999999999999999999999988777666643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=162.24 Aligned_cols=141 Identities=13% Similarity=0.006 Sum_probs=127.0
Q ss_pred HHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCC
Q 007862 45 LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHP 124 (587)
Q Consensus 45 ~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 124 (587)
.+.++.+.....+..+++.++..+++++.|+++|| +|||+++++++++.++ +.+..+++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i------------~~~~~a~a~------- 169 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFII------------FGILTAFAP------- 169 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHH------------HHHHHHHhC-------
Confidence 35677889999999999999999999999999999 6999999999999999 777777766
Q ss_pred CCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHh
Q 007862 125 PKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ 204 (587)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 204 (587)
++..+++.|++.|++.++...+...+++|.+++++ |+.+.++ +.....++.+++
T Consensus 170 -------------------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~ 223 (521)
T KOG0255|consen 170 -------------------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLP 223 (521)
T ss_pred -------------------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHH
Confidence 88999999999999999999999999999999866 9999999 888888888899
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 205 TVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 205 ~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
.+++++.. +||+.+++..+..++.++.
T Consensus 224 ~~~a~~~~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 224 AGAAYITR--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 99999887 8999999988777766555
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=156.32 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=122.2
Q ss_pred CccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchhhhh-HH
Q 007862 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTIT-FA 90 (587)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~-~~ 90 (587)
++|+.+.=-...+..+..+..+..+++.|+++++|+|..++|.+..+.-+.-.+..|+.|+++||. +||||..+ ++
T Consensus 7 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~ 86 (444)
T PRK09669 7 TTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF 86 (444)
T ss_pred cHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH
Confidence 344333222334555666666778899999999999999999999999999999999999999992 38866555 55
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
.+...+ +..++......+ .......+++..++.+++..+......++.
T Consensus 87 ~~~~~i------------~~~l~f~~p~~~--------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~ 134 (444)
T PRK09669 87 AIPFGV------------VCLLTFYTPDFG--------------------ATGKIIYACVTYILLSLVYTAINVPYCAMP 134 (444)
T ss_pred HHHHHH------------HHHHHHhCCCCC--------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhH
Confidence 555555 433222211100 112344555555666766667777777888
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-------ccchhhHHHHHHHHHHHHHHHHH
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-------SVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-------~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
+|..++. ++|.+..++.....++|..+++.+...+.. ..+|+..+.+.+++.++..+..+
T Consensus 135 ~~~t~~~-----~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 135 GAITNDP-----RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9987542 238888888888888888887765433321 34688777776665555444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=156.83 Aligned_cols=172 Identities=8% Similarity=-0.016 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----ccccchhhh-hHHHHHHHHhh
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD----TYIGRFKTI-TFASIAAILLA 98 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Gr~~~~-~~~~~~~~~~~ 98 (587)
...+..++.+..+..+++.|+++.+|+|...+|.+..+.-+.-.+..|+.|+++| | +||||.. +++.+...+
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i-- 89 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSV-- 89 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHH--
Confidence 3345556667777788999999999999999999999999999999999999999 6 5995554 456666566
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+..++...... ++......+++.-++.+++.........++..|..++.
T Consensus 90 ----------~~~llf~~p~~--------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~- 138 (473)
T PRK10429 90 ----------VLFLLFSAHLF--------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK- 138 (473)
T ss_pred ----------HHHHHHcCCCC--------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH-
Confidence 44333221110 01112344455556677888888888889999988542
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcc-------cccchhhHHHHHHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-------DSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~-------~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
++|.+.+++.....++|+.+.+.+...+. +..+|++...+.+++.++....
T Consensus 139 ----~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 139 ----REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 23888888877777887666655543321 1235666665555554444333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-14 Score=156.56 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeec
Q 007862 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTA 117 (587)
Q Consensus 38 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 117 (587)
.....++.+++|-+ ....|+...+.+...+..++.|.++|. +|||..++++.++.++ |++..+-+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vv------------G~Iv~atA~ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVV------------GSIVCATAQ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHh------------HHHHhhcCC
Confidence 56678999999976 566789999999999999999999999 6999999999999999 999988776
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHH
Q 007862 118 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFT 197 (587)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (587)
+...++.+-.+.|+|.|.... ....++|..|.+. |..+..+.....-
T Consensus 130 --------------------------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i 176 (599)
T PF06609_consen 130 --------------------------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFI 176 (599)
T ss_pred --------------------------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHH
Confidence 667799999999999887764 5556899998744 7776666665554
Q ss_pred HHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 198 VVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 198 ~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+...+++.++..+....+|||.|++..+...+++++.++
T Consensus 177 ~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 177 ITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred hhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 555566777766666679999999988877766655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-16 Score=161.50 Aligned_cols=403 Identities=15% Similarity=0.045 Sum_probs=218.9
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCC
Q 007862 50 MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDV 129 (587)
Q Consensus 50 ~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 129 (587)
++....+.+.++..++..+++++.||++|+ +|||+++...++++++ +++.++++..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi------------~t~~~~~s~~----------- 136 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMII------------CSALSGLSVG----------- 136 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHH------------HHHHhccCCC-----------
Confidence 567788899999999999999999999999 5999999999999999 8886666442
Q ss_pred CCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhh--
Q 007862 130 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL-- 207 (587)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~-- 207 (587)
.+++..-...+...|.++|+|.|+-+|++.+..+|..-.. +||...++.......|...|.++.
T Consensus 137 --------~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~------~RGa~iaavFa~Qg~GilaG~ivt~I 202 (538)
T KOG0252|consen 137 --------TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK------TRGAFIAAVFAMQGFGILAGGIVALI 202 (538)
T ss_pred --------CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc------cccceeEEEEEecchhHhhccHHHHH
Confidence 1222234567899999999999999999999999988764 488877776655555555444433
Q ss_pred --hhccc-----------ccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhh-HHHHHHHHHHhccccCCCCC
Q 007862 208 --VYIQD-----------SVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSG-IGQVLVAAYKKRRLTLPQGQ 273 (587)
Q Consensus 208 --~~i~~-----------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~ 273 (587)
...-. ..=||..|.+.++..++.+..-+.. |+...... +.+-..++.+..++....
T Consensus 203 v~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M--------~Et~~Y~al~~~~~~~a~~d~~k~~~~-- 272 (538)
T KOG0252|consen 203 VSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM--------PETARYTALVSKKLKQAAGDMKKVLSV-- 272 (538)
T ss_pred HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC--------CcchhHHHHhhcCHhhhhhcccccccc--
Confidence 22211 1239999998877655443321111 11111110 000000000000000000
Q ss_pred CCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHh
Q 007862 274 MDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLT 353 (587)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (587)
+ +... .+...+..+...|..+.... . ..++-..++. ....|.
T Consensus 273 ------------------------~--------~~~~-~~~~~~~~~~~~~~~~F~~~---f-~~~hg~~Llg-t~~~WF 314 (538)
T KOG0252|consen 273 ------------------------D--------IEAE-STAESDVPPPSNSFGLFSRL---F-LRWHGKHLLG-TAGTWF 314 (538)
T ss_pred ------------------------c--------cchh-hccccCCCCcccccchHHHH---H-HHHHHHHHHH-HHHHHH
Confidence 0 0000 00000000111111100000 0 0001111111 122222
Q ss_pred hh-ccccceeeeeeccccccCCCccccCcc-cc------cccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHH
Q 007862 354 SI-SQQGTFTVSQAMKMNRHLGPKFQIPPG-TV------GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGI 425 (587)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~------~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~ 425 (587)
.+ .-.++..+.|..-.+. .+ + +|.. .. .-.+.+.........-++...+.|+.+| .+.-+.
T Consensus 315 llDiafy~~nL~~s~I~~~-ig--~-~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR-------k~iq~~ 383 (538)
T KOG0252|consen 315 LLDIAFYGQNLFQSVIFSA-IG--V-IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR-------KYIQLM 383 (538)
T ss_pred hhhhhhhccccHHHHHHHh-hc--c-CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh-------HHHHHh
Confidence 21 1112222222111110 10 0 1110 00 0112222222222222333334555543 356777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCcceeehH-HHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHH
Q 007862 426 GMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW-LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFG 504 (587)
Q Consensus 426 G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~-li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ 504 (587)
|++++.+-++..+..-+. ..+... .+.-.+.+-+++-.-..+.-.+..|.+|.+.||+.-|++-.+.-
T Consensus 384 GF~~~~i~~~~~~~~y~~-----------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK 452 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQ-----------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGK 452 (538)
T ss_pred hHHHHHHHHHHHcCCccc-----------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhcc
Confidence 888887777766643220 011111 22222334456666666677788999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCccc
Q 007862 505 FASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQS 572 (587)
Q Consensus 505 lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 572 (587)
+|..++........+. + +....+..+.|+++++++++++++.+++. |+++++.|+.
T Consensus 453 ~GAivg~~~F~~~t~~-------~----yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei 508 (538)
T KOG0252|consen 453 AGAIVGAFGFLYLTDH-------N----YPPNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEI 508 (538)
T ss_pred chHHHHHHHhhHhhhc-------c----CCccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHh
Confidence 9999998766554431 1 11123566789999999999998887664 8888887765
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=159.70 Aligned_cols=419 Identities=15% Similarity=0.092 Sum_probs=255.2
Q ss_pred hHHHHHHHHHHHHhhhhHH---HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 20 PYILGNETFERLATIGLLA---NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~---~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.+.+..++.++.++++.. .+-..++++++.+..+++|+.++......++.|+.+.+.|| +|.|.+.+.+.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence 6667777777777766544 34566889999999999999999999999999999999999 5999999999999999
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHH-HHHHHHHhccccccccccccccccCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLV-MGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
|+++..++. +.+.++ ..=++.|+|.|.++..+...+..+|+
T Consensus 124 ------------g~~lssF~~--------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~ 165 (509)
T KOG2504|consen 124 ------------GLLLSSFAT--------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE 165 (509)
T ss_pred ------------HHHHHHHHh--------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH
Confidence 999888877 454444 44466789999999999999998888
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 255 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (587)
|+|+.+.++...+..+|..+-|.+.-++.+.+|||+.+++-..+.+-.++.....++......+.+ .
T Consensus 166 -------kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~--~---- 232 (509)
T KOG2504|consen 166 -------KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE--E---- 232 (509)
T ss_pred -------HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh--h----
Confidence 469999999999999999999999999999999999999877666555554444444222211110 0
Q ss_pred HHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce-----
Q 007862 256 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ----- 330 (587)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~----- 330 (587)
...++.....+. . ..+..........+..+ ....+.....+ ....|+....+
T Consensus 233 ----~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 289 (509)
T KOG2504|consen 233 ----KDLRNSAASVES---T-----PKPVELRISERDSGLKK-LSLSNLATLKR----------GPDKWRNSPLQAFLSM 289 (509)
T ss_pred ----hhhccccccccc---c-----ccccccccccCCCCCCc-ccccchhhhhh----------CCccccccchhhhhhh
Confidence 000000000000 0 00000000000000000 00000000000 00011100000
Q ss_pred ----eeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHH
Q 007862 331 ----QVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPA 406 (587)
Q Consensus 331 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l 406 (587)
...+...+...+...+....+...+...+.+.. ....+.. ..+....+..+..+++.+....+
T Consensus 290 ~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--~~g~~~~-------~aa~l~Siigi~~i~gRi~~G~l---- 356 (509)
T KOG2504|consen 290 LDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK--SLGLSSN-------DAAFLLSIIGVSDIIGRIILGLL---- 356 (509)
T ss_pred hhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCChh-------hhHHHHHHHHHhhhhhhhhhhhh----
Confidence 001111111111111111111111111111111 1111111 11233334444445555544444
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 007862 407 LRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQ 486 (587)
Q Consensus 407 ~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~ 486 (587)
.++.. ++.......++++.+++.++..+. .+++.++...++++++.+...........+.
T Consensus 357 aD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 357 ADKPG-----IRALVLFLLTLLIAGLARLFLPFA---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred cCccc-----cchHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44421 244555666666666666444432 4566677777889999999988888999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007862 487 FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 487 ~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~ 561 (587)
.+.+.-+.+.|+..+.+.++..+++.+.+.+.+.+ ++|+..|...++..+++.+..++..
T Consensus 417 ~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cChhhcchHHHHHHHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999888777654 2467778888888888887766655
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=169.26 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=153.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH
Q 007862 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 93 (587)
..||.+...+....+....+.+......+.+.++++++.++.|++.+.+.++..++.++.|+++|| +||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHH
Confidence 445555555555666666667777778888999999999999999999999999999999999999 5999999999999
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCC------C-CCCCCCCC----------------cccCCc--chhHHHH
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK------C-DVAKPPFG----------------QCKSAN--SMQLGVL 148 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~-~~~~~~~~----------------~~~~~~--~~~~~~~ 148 (587)
+.+ |.++.++..++..-+... . .+...+.. .|.... +..+..+
T Consensus 108 ~~l------------g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (633)
T TIGR00805 108 MGL------------GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLF 175 (633)
T ss_pred HHH------------HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhh
Confidence 999 887777654321111000 0 00000011 111111 2246678
Q ss_pred HHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc--------------
Q 007862 149 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-------------- 214 (587)
Q Consensus 149 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-------------- 214 (587)
+++|+++|+|.+...+...+++.|.+|+++ |+..+++++....+|.++|+++++++.+.+
T Consensus 176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~ 249 (633)
T TIGR00805 176 LVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILT 249 (633)
T ss_pred HHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCC
Confidence 899999999999999999999999999865 999999999999999999999999887532
Q ss_pred --------chhhHHHHHHHHHHHHHHHHHh
Q 007862 215 --------SWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 215 --------~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+|+..|++.+++.++..+.+++
T Consensus 250 ~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 250 PTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777888877766665544444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-15 Score=150.90 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=105.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCC
Q 007862 49 HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCD 128 (587)
Q Consensus 49 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 128 (587)
+.+..-+|.+-+.|++...+.++++|.+|||| |||.++++|++...+ ..++.+.+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~------------s~ll~~~S~----------- 119 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVAL------------SYLLWALSR----------- 119 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHH------------HHHHHHHHH-----------
Confidence 34557789999999999999999999999996 999999999999888 877777766
Q ss_pred CCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhh
Q 007862 129 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 208 (587)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 208 (587)
++..++++|++.|+.-|-..+ +.++++|.+++++ |+.+++...+...+|..+||.++|
T Consensus 120 ---------------~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGg 177 (451)
T KOG2615|consen 120 ---------------NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGG 177 (451)
T ss_pred ---------------HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhh
Confidence 677788889999999887655 7889999999855 999999999999999999999999
Q ss_pred hccc
Q 007862 209 YIQD 212 (587)
Q Consensus 209 ~i~~ 212 (587)
|+..
T Consensus 178 yla~ 181 (451)
T KOG2615|consen 178 YLAQ 181 (451)
T ss_pred HHHh
Confidence 9987
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=146.19 Aligned_cols=171 Identities=11% Similarity=-0.022 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHH--HHHHHHHHHHHhhhh-HHHhhccccchhhhhHHHHHH-H--
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANI--LNIWGGVTNFAPLLG-AFISDTYIGRFKTITFASIAA-I-- 95 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i--~~~~~~~~~~~~~~~-G~laD~~~Gr~~~~~~~~~~~-~-- 95 (587)
+....+.+.+.+....+.+|.|+ ++.|.|.++.|.. .........+.+|+. ++.+|| .||||..++.+.+. .
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l-~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLL-REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHH
Confidence 34444455555454556666665 5679999999997 355566666666666 668999 59999975555321 1
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+. +........ .....++....+.++..+...+....+..|..+
T Consensus 84 ~~-----------~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~ 127 (390)
T TIGR02718 84 LA-----------SLALVGPDV-------------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFN 127 (390)
T ss_pred HH-----------HHHcCCcch-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 10 111111111 012223344444555666666666666666555
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++ +++.+.+...++..+|..+|+.+.+++.+..|||..|++.+++.++..+..++
T Consensus 128 ~~------~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 128 GR------TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred Hh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 42 36667777777779999999998889999999999999988777665555444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=150.06 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=136.8
Q ss_pred HhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCC
Q 007862 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPP 125 (587)
Q Consensus 46 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (587)
++.+.++++.|++.++..+...+..++.|.+.|| +|+|-.++++++.+.+ ++++.++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~------------sTilFafg~-------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFL------------STILFAFGN-------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHH------------HHHHHHHcc--------
Confidence 3567789999999999999999999999999999 7999999999999999 999999877
Q ss_pred CCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhh
Q 007862 126 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 205 (587)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 205 (587)
++++++++|.+||+|.++...+..++++|.||++. +|++++++.-.+..+|-.+||.
T Consensus 158 ------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPp 214 (464)
T KOG3764|consen 158 ------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPP 214 (464)
T ss_pred ------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCC
Confidence 77889999999999999999999999999999865 4899999999999999999999
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007862 206 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGK 238 (587)
Q Consensus 206 ~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 238 (587)
++|.+-+..|.+.+|++.++++++...+.++..
T Consensus 215 fGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 215 FGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred cccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 999999999999999998888887777655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-14 Score=149.61 Aligned_cols=156 Identities=9% Similarity=0.045 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHhhCCChhh-HHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 35 GLLANFMVYLLKEYHMNQTS-AANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 35 ~~~~~~~~yl~~~~~~s~~~-~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
...++..+|+.+++|+|+++ .|.+..+|..++.++.+++|+++|| +|-|+++.++.+.+.+ ..+++
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl------------~t~L~ 109 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVC------------VWLLL 109 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH------------HHHHH
Confidence 34566778999999999999 9999999999999999999999999 6999999999999999 88887
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
+++. ++..+.+.|++.|+++|+.. +...++..++|+++ |+++.++..
T Consensus 110 ~fa~--------------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~ 156 (511)
T TIGR00806 110 LLGT--------------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSR 156 (511)
T ss_pred HHHH--------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHH
Confidence 7765 67889999999999999999 99999999999865 999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccchhhHH---HHHHHHHHHHHHHHHhc
Q 007862 194 TTFTVVILITQTVLVYIQDSVSWVIGF---GIPTVLMIGAIILFLVG 237 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~~~w~~~f---~i~~~~~~~~~~~~~~~ 237 (587)
.+.++|.++++.++++ ..++|||+-+ .|+.....+++++.++.
T Consensus 157 sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 157 AAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 4568998644 45566666666655543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=141.12 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=129.0
Q ss_pred cCCCCccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhH
Q 007862 11 KKPGGWKAMPYILGNETFERLAT-IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 89 (587)
...++.|. ..+++..+|--.++ ....-.+.+.+++.+++|..|++++..++..++.+++++.|++.+| +|+|+.++.
T Consensus 6 ~~~~~~~~-~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~l 83 (422)
T COG0738 6 SSSKSVKL-AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVL 83 (422)
T ss_pred cccCCcee-HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHH
Confidence 33334443 34444444444444 5566678889999999999999999999999999999999999999 599999999
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
++.++++ |..+..=++ +..++..++.+.++.+.|.|..+....++
T Consensus 84 gL~l~av------------g~~lF~pAa-----------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~ 128 (422)
T COG0738 84 GLLLYAV------------GAALFWPAA-----------------------SSKSYGFFLVALFILASGIGLLETAANPY 128 (422)
T ss_pred HHHHHHH------------HHHHHhhhh-----------------------hhhhHHHHHHHHHHHHhhhHHHHhccchH
Confidence 9999999 877654333 23478999999999999999999999999
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 212 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~ 212 (587)
++...++++ -.+=++.......+|+.++|.+++++..
T Consensus 129 v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 129 VTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999744 4455677777889999999999998876
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=149.58 Aligned_cols=357 Identities=9% Similarity=0.021 Sum_probs=218.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----ccccchhhhh-HHHHHHHHhhhcc
Q 007862 27 TFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD----TYIGRFKTIT-FASIAAILLAEHF 101 (587)
Q Consensus 27 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Gr~~~~~-~~~~~~~~~~~~~ 101 (587)
+.....+.....+++.|+++.+|+++..++.+..+.-+.-.+..|+.|+++| | +||||..+ ++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~----- 84 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLAL----- 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHH-----
Confidence 4444555556678899999999999999999999999999999999999999 7 69888776 46666777
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
+..++.... |. +.........+.+..++..++.........+++.|..++.+
T Consensus 85 -------~~~llf~~~--p~----------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--- 136 (428)
T PF13347_consen 85 -------SFFLLFSPP--PA----------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--- 136 (428)
T ss_pred -------HHHHhhccc--cc----------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh---
Confidence 666555431 00 00011123344666666789999999999999999988643
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-------chhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-------SWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-------~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
+|.+..++.....++|..+...+.+.+.+.. +|++...+.+++.++..++.....|+...+.+++++.
T Consensus 137 --~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~--- 211 (428)
T PF13347_consen 137 --ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK--- 211 (428)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc---
Confidence 3888888888888888876666655554321 6888877776666655555444444310000000000
Q ss_pred HHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeeh
Q 007862 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEE 334 (587)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 334 (587)
.++++...+-..+
T Consensus 212 -------------------------------------------------------------------~~~~~~~~~~~~n 224 (428)
T PF13347_consen 212 -------------------------------------------------------------------ISLRDSLRSLFRN 224 (428)
T ss_pred -------------------------------------------------------------------cccccchhhhccc
Confidence 0000000000001
Q ss_pred hhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCC
Q 007862 335 VKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHE 414 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~ 414 (587)
|.+...+.........+........++... .+... -..+.+..+..+..++..++..++ .+|+++|
T Consensus 225 -r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~--vl~~~------~~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~- 290 (428)
T PF13347_consen 225 -RPFRILLLAFFLQWLAFALMNTFLPYYFTY--VLGNE------GLISIFMLIFFVASIVGSPLWGRL----SKRFGKK- 290 (428)
T ss_pred -chHHHHHHHHHHHHhhhhhhhhHHHHHHHH--HhcCc------hhhHHHHHHHHHHHHHHHHHHHHH----HHHccce-
Confidence 111111111111111111111111111100 01100 012233334455555566654444 7777554
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCc-----
Q 007862 415 GGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD----- 489 (587)
Q Consensus 415 ~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~----- 489 (587)
+.+..+.++.+++.++..+.. ..+.+++.+..++.+++.+......+++..|..+.
T Consensus 291 ------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t 351 (428)
T PF13347_consen 291 ------KVYIIGLLLAALGFLLLFFLG-------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT 351 (428)
T ss_pred ------eehhhhHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc
Confidence 456677777777776665542 14667788888899999999999999988888874
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007862 490 --HMKSIANSLLFCSFGFASYLSSLLITIVHGVTA 522 (587)
Q Consensus 490 --~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~ 522 (587)
+..|...|++++...++..+++.+.+.+....+
T Consensus 352 g~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 352 GRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred CCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 446899999999999999999998888776543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=146.08 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=128.9
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
.++|..+.....+..+... .|+.. .....+++++|+|+++.+++.++.. ...++.+++|+++|| +|||++++++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 4455444444444433322 23333 3445789999999999999988744 445677789999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
++.+ |+++++++..- . -..+.+.+++.|++.|+|.+...+....++.+
T Consensus 100 l~~i------------G~ll~ala~~~-~-------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~ 147 (591)
T PTZ00207 100 VFCL------------GTLLFALTFQE-V-------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLS 147 (591)
T ss_pred HHHH------------HHHHHHHHhcc-c-------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99887775210 0 00167889999999999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHH-HhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILI-TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
+||+ +|+++.++.....++|+++ +++..+++.+ +|+..|++.+++.++..++.
T Consensus 148 ~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 148 VFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred hChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 9973 3899999999999999975 6666666553 57777776666555544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=140.20 Aligned_cols=382 Identities=11% Similarity=0.096 Sum_probs=204.1
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
.++....+++.+++-...++++.|+++ .|+|..|.|.+.++..+...+++++.|+++||+..+||.+.++.++..+
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~--- 80 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL--- 80 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH---
Confidence 445556666666666677888888764 7799999999999999999999999999999964567777776666555
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
..+...... +++.++...++..+......|...++..+...+
T Consensus 81 ---------~~~~~~~~~--------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--- 122 (400)
T PF03825_consen 81 ---------ALLLLAFSS--------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--- 122 (400)
T ss_pred ---------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc---
Confidence 433333322 445566666667777777777777777766653
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhh-hhhccccc---chhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTV-LVYIQDSV---SWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 255 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~-~~~i~~~~---~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (587)
++.-++-...-.++|..++... ++.+.... +..+.+++.+...++.....+. .|+.+.++..+.+.+
T Consensus 123 -----~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~--- 193 (400)
T PF03825_consen 123 -----RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVK--- 193 (400)
T ss_pred -----ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcc---
Confidence 2333333343444444444322 12222111 2234555554433322222222 121110000000000
Q ss_pred HHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehh
Q 007862 256 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV 335 (587)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 335 (587)
+ ....+. |+.. .+.
T Consensus 194 ---------------~---------------------------~~~~~~-------------------~~ll-----k~~ 207 (400)
T PF03825_consen 194 ---------------K---------------------------LLGLDA-------------------LKLL-----KNP 207 (400)
T ss_pred ---------------c---------------------------ccchHH-------------------HHHh-----cCc
Confidence 0 000000 0000 001
Q ss_pred hhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccc-cCcccccccchhhhhhhhhchhhhhHHHhhhhhcCC
Q 007862 336 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHE 414 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~ 414 (587)
+.+.-.+..+..+......+.....++ +... +.. ...+....+..+.-++...+.+++ .+|+
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl-------~~~g--g~~~~~~g~~~~l~~~aEi~~f~~~~~~----~~r~---- 270 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYL-------QELG--GYSGSTIGILWALGVVAEIPFFFFSGRF----LKRF---- 270 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcc--cchhhHHHHHHHHHHHHHHHHHHHHHHH----HHhc----
Confidence 111111111111111111111111111 1111 000 112223334444444554443333 5554
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH----HHHHHHHHHHHHHHhhhhHHHHHhhCCch
Q 007862 415 GGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL----APQLILMGFCEAFNIIGQIEFFNKQFPDH 490 (587)
Q Consensus 415 ~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l----i~~~~l~~~ge~~~~~~~~~~~~~~~P~~ 490 (587)
+..+.+..+.+..++=+.++.... .+.++. .++.++.|+..++...+...|+.+.+|++
T Consensus 271 ---g~~~ll~~a~~~~~vR~~l~a~~~--------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 271 ---GIKWLLLLALVAYAVRWLLYAYFS--------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhc--------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 555677777777666666665431 122222 22234689999999999999999999999
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007862 491 MKSIANSLLFC-SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 562 (587)
Q Consensus 491 ~rg~~~gl~~~-~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~ 562 (587)
.|+++.++++. ..++|..++..+.+.+.+....+.. -.+...+.+.+++.++..+.+++..|
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM----------FDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh----------hhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998875 5789999999999998864311110 01233445556656666665555543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-13 Score=135.19 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=140.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccc
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVT 103 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~ 103 (587)
+...++....-.......+-+...+|++.-+..++......++.+++..+|.++|+ +||||.+.+.....++
T Consensus 84 g~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v------- 155 (528)
T KOG0253|consen 84 GMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGV------- 155 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHH-------
Confidence 44445555555555666677888899999999999999999999999999999999 6999999998887777
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
.-..-+.+. |+..+...|.+.|+|.|+ .|...+.-.|..|..+
T Consensus 156 -----~~~is~~sp--------------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~----- 198 (528)
T KOG0253|consen 156 -----FGVISGASP--------------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH----- 198 (528)
T ss_pred -----HHHhhcCCC--------------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-----
Confidence 333333333 677799999999999999 9999999999998855
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHH-HHHHHHHHHHHHHhcc-ceeeeeCCCCChhhhHHHHHHHH
Q 007862 184 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI-PTVLMIGAIILFLVGK-KLYVLVEPEGSIFSGIGQVLVAA 261 (587)
Q Consensus 184 ~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a 261 (587)
|....-.. ..+.+|.++...+.-....++||||.... ...+++.+...+|+.. ++|.. .++++.+ ..+.+...
T Consensus 199 -r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~--~~G~~~k-AletL~ki 273 (528)
T KOG0253|consen 199 -RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL--AKGDDYK-ALETLHKI 273 (528)
T ss_pred -CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh--hcCChHH-HHHHHHHH
Confidence 77666666 67788888888887777788899986544 4445555544444432 23321 1222222 23334444
Q ss_pred HHhccccCCC
Q 007862 262 YKKRRLTLPQ 271 (587)
Q Consensus 262 ~~~~~~~~~~ 271 (587)
.+..+..+|.
T Consensus 274 ArmNg~qlpl 283 (528)
T KOG0253|consen 274 ARMNGKQLPL 283 (528)
T ss_pred HHhcCCCCCc
Confidence 5555565554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=140.39 Aligned_cols=173 Identities=8% Similarity=0.094 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhc---cccchhhhhH-HHHHHHHhhh
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDT---YIGRFKTITF-ASIAAILLAE 99 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~---~~Gr~~~~~~-~~~~~~~~~~ 99 (587)
..++..++.+..+..+++.|+++.+|++...+|.+..+.-+.=.+.-|+.|+++|| .+||||..++ +.+...+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i--- 92 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI--- 92 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH---
Confidence 44555566666677889999999999999999999999999999999999999996 2699877765 5456666
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+..++...... +.+....-+++.-++..++.........++.+|..++.
T Consensus 93 ---------~~~llf~~p~~--------------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~-- 141 (460)
T PRK11462 93 ---------VCVLAYSTPDL--------------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP-- 141 (460)
T ss_pred ---------HHHHHHhCCCC--------------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--
Confidence 44333221100 01112333455555667888888878888888888753
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc-------cchhhHHHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-------VSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~-------~~w~~~f~i~~~~~~~~~~~ 233 (587)
++|.+..++...+.++|..+++.+...+... .+|+....+.+++.++...+
T Consensus 142 ---~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 142 ---TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999888777665443322 35776655555544444333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-13 Score=146.12 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=126.1
Q ss_pred HHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCC
Q 007862 44 LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLH 123 (587)
Q Consensus 44 l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 123 (587)
+.+++|+...+.+.+.++|.++++++.+++|++.|| +.-.+.+..+.+++.++ +.+. +..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~-----------~~~~-~~~------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLF-----------GFLT-AAV------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHH-----------HHHH-HHH-------
Confidence 447889999999999999999999999999999999 59788877777777662 2221 122
Q ss_pred CCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHH
Q 007862 124 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILIT 203 (587)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~ 203 (587)
++.+.+++.|++.|+.+++..|+...+++.+|.+++ |+.-+++++....+|.++|
T Consensus 132 -------------------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~g 186 (495)
T KOG2533|consen 132 -------------------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFG 186 (495)
T ss_pred -------------------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHH
Confidence 278889999999999999999999999999999866 9999999999999999999
Q ss_pred hhhhhhcc------cccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 204 QTVLVYIQ------DSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 204 ~~~~~~i~------~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
.++...+. ...||||.|+|.++++++..++.++..|
T Consensus 187 gliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 187 GLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred HHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 99988753 3578999999999877766655444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=139.54 Aligned_cols=393 Identities=11% Similarity=0.053 Sum_probs=223.7
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+..+......++..+++-...++++.+++++.|+|.++.|.+.++..+...+.+|+.|.++|| +|.||-++.......+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence 355666677777777777788899999999999999999999999999999999999999999 6988876655544333
Q ss_pred hhhcccccccccceEEE-eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 97 LAEHFVTKYQGKGMLTV-TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+. +-... .....+ ..-+.++.++.++..+.......+ +.|.+-
T Consensus 86 l~----------~pff~~v~~pll-------------------------~~n~~lg~iig~i~l~~~f~~~~~-~~Ea~~ 129 (412)
T PF01306_consen 86 LF----------GPFFIYVFGPLL-------------------------QSNFWLGAIIGGIYLGLVFNAGVP-LSEAYA 129 (412)
T ss_dssp TC----------HHHHHHTHHHHH-------------------------HTT-HHHHHHTTTTTTTTTTTHHH-HHHHHH
T ss_pred HH----------HHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHcccch-HHHHHH
Confidence 00 11111 011000 001234444445555554444444 224443
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 255 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (587)
+ +-+++.+-=+|-..+-..+|.+++..++|++.+ .+-+..|++.....++..++.+..++...++.+ ..
T Consensus 130 e---r~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~----~~--- 198 (412)
T PF01306_consen 130 E---RVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAE----VA--- 198 (412)
T ss_dssp H---HHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-----SS---
T ss_pred H---HHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhh----hh---
Confidence 2 122334445566678889999999999999876 455788888776655555554444432111000 00
Q ss_pred HHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehh
Q 007862 256 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV 335 (587)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 335 (587)
+.. . ...++.+..|-.. .-..
T Consensus 199 -------------------~~~---------~------~~~~~~~~~~~~~-------------------------l~k~ 219 (412)
T PF01306_consen 199 -------------------DAL---------G------AKKDKVSLKDVLS-------------------------LFKM 219 (412)
T ss_dssp -------------------TTS---------S------S------HHHHHH-------------------------HTTS
T ss_pred -------------------ccc---------c------cCCCCCcHHHHHH-------------------------Hhcc
Confidence 000 0 0000000000000 0012
Q ss_pred hhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 336 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
|+++............+..+.|+...+...... +...+ - ...+..+++..+.-.+...+..++ .+|++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~-~~~~g--~-~~~G~l~s~~v~~E~~~m~~~p~l----i~rig---- 287 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ-SAGQG--N-QMYGYLWSVQVFLEALMMFFSPWL----INRIG---- 287 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccC--h-hHHhHHHHHHHHHHHHHHHHHHHH----HHhcC----
Confidence 333333333333444555555554422111000 00010 0 012334444445555555554444 77764
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
.++.+.++.+++.+=++..++. .+++++++.=.+-++-..+......-|..+.+|++..++.
T Consensus 288 ---~k~~Lllag~i~~iRi~~~~~~---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~ 349 (412)
T PF01306_consen 288 ---AKNLLLLAGVIMAIRIIGSGFA---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATL 349 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHT-----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred ---hHhHHHHHHHHHHHHHHHHhhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHH
Confidence 3445555555555555555543 4666777777888888888999999999999999999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007862 496 NSLL-FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 562 (587)
Q Consensus 496 ~gl~-~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~ 562 (587)
-.+. .+..++|..+.+.+.+.+.|.. ++..+|++++++.++..++..+..+
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeec
Confidence 7774 5888999999988888888643 4566788888887777666665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=126.66 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=142.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|-.+..+.++.+=-|..+-++ ..+..-+.+++|+|.+.+|++.++-.++..+.++++.+++.| +|-.+.+.+++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHH
Confidence 333344444444444444433 344557899999999999999999999999999999999999 699999999999999
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ |.++=... +...++.+-++.|.|.+......++.+-+.||
T Consensus 89 ~------------G~~iR~~~---------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp 129 (395)
T COG2807 89 A------------GILIRSLG---------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP 129 (395)
T ss_pred H------------HHHHHhcc---------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence 9 77653332 34568999999999999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHHHHHHHHHhc
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
++ -+..++.|.+..++|+++++.+...+.++. |||..+.+-+.+.+++++.++..
T Consensus 130 k~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 130 KR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred cc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 64 588999999999999999999999998776 79999988888888888777654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=136.00 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=133.6
Q ss_pred CCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH
Q 007862 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 93 (587)
++++..+..+....+....++....+++.|+++++|+++.+++++.....+...++.+++|+++|| +|||+.+..+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~ 291 (393)
T PRK15011 213 RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVA 291 (393)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHH
Confidence 344555555555555555555566788999999999999999999888888888899999999999 5999988877665
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
..+ ......... +...++..+++.+++.|...+....+..|.
T Consensus 292 ~~~------------~~~~~~~~~--------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~ 333 (393)
T PRK15011 292 GVC------------FYAGMLMAH--------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDL 333 (393)
T ss_pred HHH------------HHHHHHHHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 322211111 445566677777777776666666777888
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+|+ +|+++.+++....++|..++|.++|++.+.++|+..|.+..+..++++++.+.
T Consensus 334 ~p~-------~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 334 MPG-------QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred CCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 774 27899999998899999999999999999999999999888777776665544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-10 Score=120.48 Aligned_cols=373 Identities=12% Similarity=0.067 Sum_probs=217.9
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchhhh
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTI 87 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~ 87 (587)
+++-++|+-+.=-.-.+..++.+--+..+++.|.+...|+|...+|.+..+.=+.-.+.-|+.|.+.||. +||||-.
T Consensus 6 ~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~ 85 (467)
T COG2211 6 SKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPW 85 (467)
T ss_pred cCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHH
Confidence 3455555554444556667777777888999999999999999999999999999999999999999963 5887776
Q ss_pred hHHH-HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccc
Q 007862 88 TFAS-IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCS 166 (587)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 166 (587)
+.-. +...+ ...++..+.. .+. ..+..-.++.-.+.++++..+.-.-
T Consensus 86 lL~g~ip~~i------------~~~l~F~~p~---------~~~-----------~~k~~ya~vtY~l~~l~YT~vniPy 133 (467)
T COG2211 86 LLWGAIPFAI------------VAVLLFITPD---------FSM-----------TGKLIYALVTYMLLGLGYTLVNIPY 133 (467)
T ss_pred HHHHhHHHHH------------HHHHHHcCCC---------ccc-----------CcchHHHHHHHHHHHHHHHheeCch
Confidence 5544 55555 3333333221 000 0133445566677889999998888
Q ss_pred cccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-------ccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 167 IPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-------SVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-------~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
.++.++..++.+ +|.+..+|-....++|.++...+.+.+.. ..||+..-++.++...+++...++..+
T Consensus 134 ~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ 208 (467)
T COG2211 134 GALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVK 208 (467)
T ss_pred hhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999887643 49999999999999997777666555432 345665544444444444333333222
Q ss_pred eeee-eCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCC
Q 007862 240 LYVL-VEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDG 318 (587)
Q Consensus 240 ~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (587)
+... ..+.++ ++...+.+.......
T Consensus 209 ER~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~-------- 234 (467)
T COG2211 209 ERVVETQPTKT----------------------------------------------GVKLKLKDSFLLIFK-------- 234 (467)
T ss_pred cccCccccCcc----------------------------------------------cccccHHHHHHHHHc--------
Confidence 2111 000000 000011111111000
Q ss_pred CCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhc
Q 007862 319 TPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPF 398 (587)
Q Consensus 319 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l 398 (587)
.|.++..+....+.............++.......+. ..+...........++..++
T Consensus 235 ----------------Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~-------l~~~~~~~~~~~~~l~~~~~ 291 (467)
T COG2211 235 ----------------NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPE-------LFAYLLLLASGAGLLIGLIL 291 (467)
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChH-------HHHHHHHHHHHHHHHHHHHh
Confidence 1111112222221211111111111222211111111 11222222233333333343
Q ss_pred hhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhh
Q 007862 399 YDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIG 478 (587)
Q Consensus 399 ~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~ 478 (587)
..++.+|++|| +....|.++..++.+..-+.. ..+...+++..++.++|.+...+.
T Consensus 292 ----~p~L~~~~gkk-------~~~~~~~~~~~i~~~~~~f~~-------------~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 292 ----WPRLVKKFGKK-------KLFLIGLLLLAVGYLLLYFTP-------------AGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred ----HHHHHHHhchH-------HHHHHHHHHHHHHHHHHHhhc-------------CcchHHHHHHHHHHHHHhhccccc
Confidence 33346676444 566666776666666555431 235555666678889999999999
Q ss_pred hHHHHHhhCC-------chhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 479 QIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 521 (587)
Q Consensus 479 ~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~ 521 (587)
.++...|... .+..|..-|...++.=+|..++.++.+++.+..
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988887665 345677888899999999999999999988755
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=135.95 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=130.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|+.........++....+|++..++|.|+++++|++..+.+++.....++..++.+++|+++|| +|||+++.++.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~ 327 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3333333444455667889999999999999999999888888888888899999999999999 599999988876544
Q ss_pred HhhhcccccccccceEE-EeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 96 LLAEHFVTKYQGKGMLT-VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
+ +... ..... ..+...+++++++.+++.++..+....+..|.+
T Consensus 328 ~------------~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 371 (490)
T PRK10642 328 V------------LAIPAFILIN------------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF 371 (490)
T ss_pred H------------HHHHHHHHHh------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 2211 11111 014556778888888877777777778888999
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHHHHHHHHHh
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
|++. |+++.++.|....+++.++|.+.+++.+.. +|+..+++..+..+++++..++
T Consensus 372 p~~~------Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 372 PTHI------RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred CCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9865 999999877777777889999999988754 4676665555444444444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=132.91 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=130.6
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+..+++.....+++.|+. +.|.+ +.++....+.++..++.++.|+++|| +||||.+.++.++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~----------- 291 (399)
T PRK05122 227 LASIGFGTIATFITLYYA-ARGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEIL----------- 291 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH-----------
Confidence 444556666677788865 45653 44566777888888999999999999 5999999988887777
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.+...... +...++..+++.|++.+...|.......|.+|+++ |++
T Consensus 292 -~~~~~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~ 338 (399)
T PRK05122 292 -GLLLLWLAP--------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGA 338 (399)
T ss_pred -HHHHHHHhc--------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 655444432 44556778899999999988888888888888654 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceee
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYV 242 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~ 242 (587)
++++++...++|..+++.+.|++.+..||+..|.+.++..+++++..+..+++.+
T Consensus 339 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 339 ALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999888877777666555544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=129.49 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+......++...........++.|+.+++|.++.+.+++.....+...++.+++|+++|| +|||+++.++.++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~--- 277 (375)
T TIGR00899 202 RLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVA--- 277 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHH---
Confidence 333334444444444555678889999999999999998888877788888999999999 5999999888776555
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
......... +.+.++..+.+.+++.|...+....+..|.+|+ +
T Consensus 278 ---------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~- 320 (375)
T TIGR00899 278 ---------FYTGLAADN--------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R- 320 (375)
T ss_pred ---------HHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h-
Confidence 433222222 455667778888998888888888888888764 2
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+++++++++...++|..++|.+.+++.+..||+..|++.++..+++.++.++
T Consensus 321 -----~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 321 -----AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 5699999999999999999999999999999999999888877776665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=125.38 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=149.1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchh-hhhHHHHHHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFK-TITFASIAAIL 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~-~~~~~~~~~~~ 96 (587)
.++......++...........++.|+.+.+|.++.+.+++.....++..++.++.|+++|| +|||+ .+.++.++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 44555566667777777788888889888889999999999999999999999999999999 59999 99999988888
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+...... +....+....+.+++.+...+....++.|..|+
T Consensus 255 ------------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (352)
T cd06174 255 ------------GLLLLALAP--------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP 296 (352)
T ss_pred ------------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH
Confidence 666555543 456788899999999999999999999999997
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
++ |++.++......++|..+++.+.+++.+..+|+..|.+.+++.+++.+..
T Consensus 297 ~~------~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 297 EA------RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 54 99999999999999999999999999999999999999888877766654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=128.58 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+......++............+.| .+++|.++.+.+.+.....++..++.+++|+++|| +|||+.+.++.++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~--- 282 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPY-GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAV--- 282 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHH---
Confidence 333333344444444455555666 46789999999999999999999999999999999 5999999999888877
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.++..+... .+...++....+.+++.|...+..+.++.|.+|+++
T Consensus 283 ---------~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~- 328 (377)
T TIGR00890 283 ---------GMAAMLFIPM------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN- 328 (377)
T ss_pred ---------HHHHHHHccc------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh-
Confidence 6554443321 012234455677888888888888889999999855
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 231 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 231 (587)
|++.+++++...++|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus 329 -----~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 329 -----SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred -----hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988777666543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=134.76 Aligned_cols=175 Identities=16% Similarity=0.068 Sum_probs=128.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+|......++....++++..++|.|+++++|+|..++++......++..++.+++|+++|| +|||+.+.+...+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~- 336 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI- 336 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH-
Confidence 35556666667777778888899999999999999999999999999999999999999999 5999987765544333
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.....+.. . .+.....+.+++.|+...+..........|.+|++
T Consensus 337 -----------~~~~~~~~~--~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~ 381 (467)
T PRK09556 337 -----------IFTLGVYQH--A----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK 381 (467)
T ss_pred -----------HHHHHHHHh--c----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh
Confidence 221111111 0 13344556666666543333322335566999875
Q ss_pred CcccccchhhhhhHHHHHHHH-HHHHHhhhhhhccc------------ccchhhHHHHHHHHHHHHHHHHH
Q 007862 178 TDEGVKGINSFFNWYYTTFTV-VILITQTVLVYIQD------------SVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~------------~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
. |+++.++.....++ |..++|.+.|++.| ..+|+..|.+..+..+++++..+
T Consensus 382 ~------~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 382 A------IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred h------HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999988886 77999999999999 57899999887777776655544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=119.12 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchh
Q 007862 461 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 540 (587)
Q Consensus 461 li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~ 540 (587)
+.+.-++.|+..+...+..-++..++.|++..+...|++.++....+.+||++.+.+.+.++ +..
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r 447 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQR 447 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------Cch
Confidence 44445678889999999999999999999999999999999999999999999999987651 233
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007862 541 YFYFLIAGLGGLNIVYFLY 559 (587)
Q Consensus 541 ~~f~~~~~~~~l~~v~~~~ 559 (587)
+.+..+.++.+++.++...
T Consensus 448 ~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 5567777777777766643
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=129.21 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
++......++...+.+++..++|.|+++++|+|..+++.+.+.+.++..++.+++|+++|| +|||+++..+..+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~-- 283 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV-- 283 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH--
Confidence 3444444455556677888999999999999999999999999999999999999999999 6999998887766555
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+..+..... +...+....++.|++.++..+...+...|..|.+
T Consensus 284 ----------~~~~~~~~~--------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~- 326 (394)
T PRK03699 284 ----------LMYLFVNTD--------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA- 326 (394)
T ss_pred ----------HHHHHHHcC--------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 433332222 3334555667788888888888777777766532
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
+++..++.....++|..++|.+.|++.+..||+..|++..+..+++.++.
T Consensus 327 ------~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 327 ------SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred ------CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 45667888888899999999999999999999999988776666665443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-11 Score=129.01 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=128.2
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+..+.+..+..+.+.|+.+ .|.+. .+.....+.++..++.++.|++.|| +||||.+.++.++..+
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~----------- 291 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETV----------- 291 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHH-----------
Confidence 3445555666677777654 56553 5566677778888999999999999 6999999999888877
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.++..+.. +...++....+.|++.+...|.......|.+|+++ |++
T Consensus 292 -~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 338 (392)
T PRK12382 292 -GLLLLWLAP--------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGT 338 (392)
T ss_pred -HHHHHHHcc--------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHH
Confidence 665544432 44566778889999999888888888888888754 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.+++++...++|..++|.+.+++.+..||+..|.+.+++.++++++.+.
T Consensus 339 ~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 339 ALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988877777666544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=127.20 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChh---hHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQT---SAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~---~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
.+...++.......+...++.|+.+..+.... ..+.+..+..++..++.++.|+++|| +|||+++.++.++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~-- 300 (408)
T PRK09874 224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVL-- 300 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHH--
Confidence 33334444455555666777787765443221 24556666777788889999999999 6999999998887776
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.+...... +.+.+++.+++.|++.+...|...+.+.|..|+++
T Consensus 301 ----------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (408)
T PRK09874 301 ----------LLIPMSFVQ--------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI 344 (408)
T ss_pred ----------HHHHHHHhc--------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc
Confidence 554433322 45667788899999999999998888888777644
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
|++.+++++...++|..+||.++|++.+..||++.|++.+++.+++.++.+.
T Consensus 345 ------~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 345 ------AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred ------ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988887777666544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-09 Score=112.46 Aligned_cols=346 Identities=11% Similarity=0.067 Sum_probs=199.1
Q ss_pred HHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcccc-----chhhhhH-HHHHHHHhhhcccccccccceEEEeeec
Q 007862 44 LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-----RFKTITF-ASIAAILLAEHFVTKYQGKGMLTVTLTA 117 (587)
Q Consensus 44 l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----r~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 117 (587)
+-.|++++..-.+.+++....... ..+..|+.||++ + ||-.+++ +.++++. |..+...+.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~------------g~~~ap~a~ 71 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAG------------GLAIAPFAL 71 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHH------------HHHHHHHHH
Confidence 345889988888888887776665 588899999995 7 6655554 4444444 443333222
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHH
Q 007862 118 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFT 197 (587)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (587)
.+- .. .. ...+.+.........+...+.|+|.+....+..++.+|..|+++ |++..++.|.+.-
T Consensus 72 ~~l--~~-~~-------~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli 135 (403)
T PF03209_consen 72 LLL--AE-SG-------QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLI 135 (403)
T ss_pred HHH--cc-cc-------cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHH
Confidence 100 00 00 00112222334466777788899999999999999999999865 9999999999999
Q ss_pred HHHHHHhhhhhhcccccchh-h---HHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHHhccccCCCCC
Q 007862 198 VVILITQTVLVYIQDSVSWV-I---GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQ 273 (587)
Q Consensus 198 ~g~~i~~~~~~~i~~~~~w~-~---~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 273 (587)
+|..++..+.+.+.+.++-. . .-..+.+...+.++..+=.+++..+..+ .++
T Consensus 136 ~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~----------------------~~~-- 191 (403)
T PF03209_consen 136 VGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA----------------------AAE-- 191 (403)
T ss_pred HHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc----------------------CCC--
Confidence 99999999999988877632 2 2122222222222222211111111000 000
Q ss_pred CCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhHHHHHHHHHHh
Q 007862 274 MDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLT 353 (587)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (587)
.++.++.+....... ..+.|+++. .++.....+.+
T Consensus 192 ----------------------~~~~~f~~a~~~~~~---------------------~~~a~~f~~--fl~l~t~a~~~ 226 (403)
T PF03209_consen 192 ----------------------RPRPPFREAWRQVWA---------------------SPQARRFFV--FLFLGTLAFFM 226 (403)
T ss_pred ----------------------CCCccHHHHHHHHHh---------------------CCChhHHHH--HHHHHHHHHHh
Confidence 000111111110000 001122111 11121222222
Q ss_pred hhccccceeeeeeccccccCCCccccC---cccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHH
Q 007862 354 SISQQGTFTVSQAMKMNRHLGPKFQIP---PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 430 (587)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~ 430 (587)
.-.-+-+ +-.+. |.++ ...++.....+.++...+..++. .++. .+.+....|....
T Consensus 227 QD~iLEP---ygg~V--------fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l---~~~~-------~~~~~a~~G~~~~ 285 (403)
T PF03209_consen 227 QDVILEP---YGGEV--------FGMSVGETTRLTAFWGGGTLLGMLLAGFLL---SRRL-------GKKRTAALGCLLG 285 (403)
T ss_pred hHHHcCC---chhHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-------CchHHHHHHHHHH
Confidence 1111111 11111 1122 23444455666666666655542 1122 2233344555555
Q ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHH
Q 007862 431 ILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLS 510 (587)
Q Consensus 431 ~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~ 510 (587)
.+++....... ...+.+.+.+..+++|++.++......+..++..+++..|+.+|.|...+.++..++
T Consensus 286 ~~~f~lii~a~------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg 353 (403)
T PF03209_consen 286 ALAFALIILAG------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLG 353 (403)
T ss_pred HHHHHHHHHHH------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 55554444332 123566788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccc
Q 007862 511 SLLITIVHGVT 521 (587)
Q Consensus 511 ~~l~~~v~~~~ 521 (587)
..+.+.+.|..
T Consensus 354 ~~~GG~~~D~~ 364 (403)
T PF03209_consen 354 TFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=129.43 Aligned_cols=180 Identities=15% Similarity=0.051 Sum_probs=130.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
++.........++..+.+|....+++.|+++++|++......+..+......++.+++|+++|| +||||++..+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~ 327 (438)
T PRK09952 249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGT 327 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHH
Confidence 3333444455667778889899999999999999998877666667777778889999999999 699999988876655
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.+....... ...+...++...++.+++.+...+...+++.|.+|
T Consensus 328 ~------------~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 373 (438)
T PRK09952 328 L------------SAFPFFMALE----------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG 373 (438)
T ss_pred H------------HHHHHHHHHH----------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5 3322211110 00023344455566688888888888999999999
Q ss_pred CCCcccccchhhhhhHHHHHH-HHHHHHHhhhhhhccccc--chhhHHHHHHHHHHHHHHHHHh
Q 007862 176 ATTDEGVKGINSFFNWYYTTF-TVVILITQTVLVYIQDSV--SWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~-~~g~~i~~~~~~~i~~~~--~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++. |+++.++.+... .+|+.++|.+.+++.+.. +|+..|.+..+..+++.+..+.
T Consensus 374 ~~~------r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 374 ASY------RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred cch------hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 854 888999877554 589999999999997743 4888887776666666555444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=122.14 Aligned_cols=172 Identities=13% Similarity=0.058 Sum_probs=127.4
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhh--h------h
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT--I------T 88 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~--~------~ 88 (587)
|.++......++....++....+++.|+.+++|.+..+.+++..+..+...++.+++|+++|| +|||+. + .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence 345566677777778888888899999999999999999999999999999999999999999 599961 1 1
Q ss_pred HHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccc
Q 007862 89 FASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIP 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 168 (587)
++.++..+ ......... +....+....+.+.+.+ ..+...+
T Consensus 294 ~~~~~~~~------------~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~-~~~~~~~ 334 (399)
T TIGR00893 294 IAGLVLSL------------LMFATNYVN--------------------------IPYAALALVALGFFGLG-AGAIGWA 334 (399)
T ss_pred HHHHHHHH------------HHHHhccch--------------------------hHHHHHHHHHHHHhchh-hhhHHHH
Confidence 11111111 111111110 22333333333334444 7899999
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHH
Q 007862 169 FGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~ 234 (587)
+..|.+|+++ |++.+++.....++|..++|.+.+++.+..| |+..|.+.++..+++.+..
T Consensus 335 ~~~~~~~~~~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 335 LISDNAPGNI------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHhhcChhH------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999855 9999999999999999999999999999988 9999988777666665544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-11 Score=128.85 Aligned_cols=178 Identities=11% Similarity=-0.027 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCh--------hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHH
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQ--------TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~--------~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 91 (587)
+..+...++..........+++.|+. +.|.++ ...+.+.++..+...++.++.|+++|| +|||+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 44445555555555455566777765 455443 566888999999999999999999999 69999999999
Q ss_pred HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 92 IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
++..+ +..+...... +..+...+++..++.|++.+...++...++.
T Consensus 289 ~~~~v------------~~~l~~~~~~----------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~ 334 (418)
T TIGR00889 289 VAWAL------------RFGFFAYGDP----------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVE 334 (418)
T ss_pred HHHHH------------HHHHHHHcCc----------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888 6544443220 0113456778899999999999999999999
Q ss_pred ccCCCCCcccccchhhhhhHHH-HHHHHHHHHHhhhhhhcccc------cchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 172 DQFDATTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDS------VSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~i~~~------~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
|.+|+++ |++++++.+ ....+|..+||.++|++.+. +||+..|.+.++..+++.+++++..+
T Consensus 335 ~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 335 KEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999755 999999997 56789999999999999886 46999999887776666666554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-11 Score=125.22 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
......+...........++.|+.+++|++..+.+++.....++..++.++.|+++|| +|||+++.++.++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~---- 317 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLL---- 317 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHH----
Confidence 3333444445555667788999999999999999999999999999999999999999 69999998887765330
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
......... +...+.++..+.++..++..+...+++.|.+|+++
T Consensus 318 -------~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 361 (405)
T TIGR00891 318 -------IIPVFAIGA--------------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ--- 361 (405)
T ss_pred -------HHHHHHhCC--------------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---
Confidence 111111111 34455666667777777777888889999998755
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGI 222 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i 222 (587)
|++.+++.+...++|..++|.+.|++.|..| |+..|..
T Consensus 362 ---~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 ---RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred ---hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8877665
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=125.64 Aligned_cols=168 Identities=15% Similarity=0.032 Sum_probs=129.6
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
..+......++....++.+..+++.|+++++|.+..+.+.+.....+...++.+++|+++|| +|||+++..+.++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence 35666666777778888888899999999999999999999999999999999999999999 59999887655544330
Q ss_pred hhcccccccccceEEE-eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 98 AEHFVTKYQGKGMLTV-TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.... .+.. ..+...++...++.+++.+...+...+++.|.+|+
T Consensus 299 -----------~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 343 (394)
T TIGR00883 299 -----------AVPLLMALLD------------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT 343 (394)
T ss_pred -----------HHHHHHHHhc------------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc
Confidence 21111 1111 01445566777888999999999999999999998
Q ss_pred CCcccccchhhhhhHHH-HHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLM 227 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~ 227 (587)
++ |+++++..+ ....+|..++|.++|++.+..| |++.++...+..
T Consensus 344 ~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 344 EV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred cc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 55 888888855 4456888999999999999888 887766555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=122.34 Aligned_cols=175 Identities=12% Similarity=0.097 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
.+.+.....+...+++++..+++.|+.+ +|.+..+++.....+.++..++.++.|+++|| +|||+++.++..+..+
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~-- 282 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV-- 282 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH--
Confidence 3444455556667888888999999875 89999999999999999999999999999999 6999999998877766
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.+...... . +...+ ..++.|++.|...|.......|.++++
T Consensus 283 ----------~~~~~~~~~---~----------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~- 324 (393)
T PRK09705 283 ----------GFCGFIWLP---L----------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP- 324 (393)
T ss_pred ----------HHHHHHHcc---c----------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH-
Confidence 554322211 0 11112 224568888888887777777777532
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhccc
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+.+++.+++.+...+++..++|.+.|++.|..| |...|.+.++..+++++..+...+
T Consensus 325 ----~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 325 ----AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 238999999999999999999999999999876 788888877666666555444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=121.28 Aligned_cols=174 Identities=9% Similarity=-0.044 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+......++.....++...++++|+.+++|+|..+++++..++.++..++.++.|+++|| +|||+.+ .+..+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~--- 282 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLV--- 282 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHH---
Confidence 334444455555666666778888888899999999999999999999999999999999 5988654 44443333
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+........ .+...++...++.|++.+...+.....+.+..|+ +
T Consensus 283 ---------~~~~l~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~- 326 (390)
T PRK03545 283 ---------CLLLLLPAA-------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A- 326 (390)
T ss_pred ---------HHHHHHHHh-------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c-
Confidence 322211111 1455667777888888888777777777776653 3
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
|+++++++....++|..+||.++|++.+..|++..|.+.+++.+++++......+
T Consensus 327 -----~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 327 -----TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999999999988888777776655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-11 Score=109.10 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccC
Q 007862 60 NIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKS 139 (587)
Q Consensus 60 ~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (587)
..+.++..++.++.|+++|| +|||+++..+.++..+ +.+......
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~------------~~~~~~~~~---------------------- 49 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVL------------STAMFALSS---------------------- 49 (141)
T ss_pred EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHH------------HHHHHHHhc----------------------
Confidence 44567788899999999999 5999999999888877 655444432
Q ss_pred CcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhH
Q 007862 140 ANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIG 219 (587)
Q Consensus 140 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~ 219 (587)
+.+.+.+.+.+.|++.+...+....+..|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.
T Consensus 50 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 119 (141)
T TIGR00880 50 ----NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119 (141)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHH
Confidence 56678888999999999999999999999999865 99999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007862 220 FGIPTVLMIGAIILFLV 236 (587)
Q Consensus 220 f~i~~~~~~~~~~~~~~ 236 (587)
|.+.....++..+..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 120 FLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 98877766665555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=124.98 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
+.+..++|.|+++++|++..+++++.....++..++.+++|+++|| +|||+++.++.++..+ +.++.
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~------------~~~~~ 358 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQL------------LIIPV 358 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH------------HHHHH
Confidence 3466788999999999999999999999999999999999999999 6999999888776665 44332
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
..... .+.+.+....++.+....+..+..+.++.|.+|+++ |++.+++++
T Consensus 359 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 408 (496)
T PRK03893 359 FAIGG------------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTY 408 (496)
T ss_pred hhccc------------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhh
Confidence 22110 133333333444443333445667778889998754 999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccchhhHHHHHHH
Q 007862 194 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 225 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~ 225 (587)
...++|..+||.++|++.+.+||+..+.+...
T Consensus 409 ~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 409 NVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred hhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 99999999999999999999999987765443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-11 Score=126.80 Aligned_cols=159 Identities=8% Similarity=0.009 Sum_probs=125.3
Q ss_pred HHhhhhHHHHHHHHHHhh---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 31 LATIGLLANFMVYLLKEY---HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 31 ~~~~~~~~~~~~yl~~~~---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
..+......++.|+.+.+ +.+..+.+.+.++..+...++.+++|+++|| +||||.+.++.++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~----------- 304 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAV----------- 304 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHH-----------
Confidence 333344445777776554 5667788999999999999999999999999 6999999999888887
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.++.+++. +.+.+++.+.+.+++.+...+....++.|.+|++. |++
T Consensus 305 -~~~l~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~ 351 (420)
T PRK09528 305 -RIIGSGFAT--------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SAT 351 (420)
T ss_pred -HHHHHHhcc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eee
Confidence 766655544 55667888999999988888888888899888744 777
Q ss_pred hhhH-HHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 188 FFNW-YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 188 ~~~~-~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
.++. +....++|..++|.+.|++.|..||+..|.+.+++.++..++.
T Consensus 352 ~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 352 IYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 7655 5567889999999999999999999999998776655544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=121.73 Aligned_cols=164 Identities=9% Similarity=-0.027 Sum_probs=125.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccc
Q 007862 26 ETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKY 105 (587)
Q Consensus 26 ~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~ 105 (587)
.++....++....+++.|+. +.|++..+.+.+.....++..++.++.|+++|| +|||+++..+.+...+
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~--------- 297 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILA--------- 297 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH---------
Confidence 33444555666677787765 579999999999999999999999999999999 5999999887766655
Q ss_pred cccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccch
Q 007862 106 QGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 185 (587)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (587)
+.+...... +...+.+..++.|++.++..+...++..|.+|+++ |
T Consensus 298 ---~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 342 (406)
T PRK11551 298 ---SLAALAAAP--------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------R 342 (406)
T ss_pred ---HHHHHHhcC--------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------h
Confidence 443333322 33445566677788888888888899999999865 9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHHHHHHHHH
Q 007862 186 NSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 186 ~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~ 235 (587)
++..++.+....+|..++|.+.|++.+.. +|...+.+.....++++++.+
T Consensus 343 g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 343 GTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764 456666666555555544433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=115.50 Aligned_cols=135 Identities=13% Similarity=0.191 Sum_probs=109.0
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeecc
Q 007862 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAW 118 (587)
Q Consensus 39 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 118 (587)
-+-.+.+.+.+.+.++..++.+.++.-..+.+.++||+.||.+|-|..-++-++...+ |-+..+...+
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~------------GqliFa~Ggi 132 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL------------GQLIFAAGGI 132 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH------------HHHHHHhchH
Confidence 4556777777888888999999999999999999999999998988766665555566 6555443322
Q ss_pred CCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHH
Q 007862 119 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 198 (587)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 198 (587)
.+.++....+|++.|+|.-..-.+-..+.+.+|..+| .+..|+++-....+
T Consensus 133 -----------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~ 183 (459)
T KOG4686|consen 133 -----------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARL 183 (459)
T ss_pred -----------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHh
Confidence 2378999999999999998888889999999999865 99999999999899
Q ss_pred HHHHHhhhhhhccccc
Q 007862 199 VILITQTVLVYIQDSV 214 (587)
Q Consensus 199 g~~i~~~~~~~i~~~~ 214 (587)
|...-..+-+++.+..
T Consensus 184 GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 184 GSTVNFLLMPFLYDTM 199 (459)
T ss_pred hceeeeeecHHHHHHH
Confidence 8887777777776553
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=122.15 Aligned_cols=169 Identities=9% Similarity=0.010 Sum_probs=141.5
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++..+...++...++.....+++.|++ ++|.+..+.+.+.++..+...+..+++|++.|| +|+|+++.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence 44566677777778888888899999985 599999999999999999999999999999999 5999999999999998
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..++.+.+. +.+.+++...+.|+..|...++...++.+. |+
T Consensus 283 ------------~~~~~~~~~--------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~ 323 (382)
T TIGR00902 283 ------------RWAIIGAIE--------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG 323 (382)
T ss_pred ------------HHHHHHhHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH
Confidence 776655543 677888899999999999999999999987 76
Q ss_pred CCcccccchhhhhhHHH-HHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
++ |+++++.+. ....+|..+++.++|++.|..|+ ..|.+.+++.++++++
T Consensus 324 ~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 324 SE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 44 889999986 45689999999999999999986 5566666655555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=132.14 Aligned_cols=134 Identities=8% Similarity=0.042 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCc
Q 007862 57 NILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQ 136 (587)
Q Consensus 57 ~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (587)
+...+..++..++.+++|+++|| +|||++++++.++.++ +.+++++..
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai------------~~ll~~~~~------------------- 646 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCI------------SCFFLSFGN------------------- 646 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH------------HHHHHHHHc-------------------
Confidence 33455667888999999999999 6999999999998888 666555543
Q ss_pred ccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 137 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
+...+++.+++.++..++..+...++++|++|++. |++++++.+...++|++++|.+++++.+. +.
T Consensus 647 -------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~ 712 (742)
T TIGR01299 647 -------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TK 712 (742)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 33446666778888888888999999999999854 99999999999999999999999988764 45
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 007862 217 VIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 217 ~~~f~i~~~~~~~~~~~~~~ 236 (587)
..+|.+.+++.+++.++.+.
T Consensus 713 ~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 713 AAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67787777666665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=122.45 Aligned_cols=159 Identities=8% Similarity=-0.002 Sum_probs=128.8
Q ss_pred hhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEE
Q 007862 33 TIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLT 112 (587)
Q Consensus 33 ~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 112 (587)
..+....++.|+++.+|.+..+.+++..+..++..++.+++|+++|| .++++++.++.++..+ +.++
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~------------~~~~ 305 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFL------------AVGL 305 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHH------------HHHH
Confidence 34566778889888899999999999999999999999999999999 4888888888877777 6554
Q ss_pred EeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHH
Q 007862 113 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 192 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (587)
..+.. +.....+..++.|++.+...+...+++.|.+|++. |++.++++
T Consensus 306 ~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 353 (417)
T PRK10489 306 FGLMP--------------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLW 353 (417)
T ss_pred HHccc--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHH
Confidence 44433 45556777788888888877888888899998744 99999999
Q ss_pred HHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 193 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 193 ~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+...++|..+||.+.|++.+.+|++..|.+.+...++..++...
T Consensus 354 ~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 354 TAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887766554444444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=121.40 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=122.8
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+..+.+.....+++.|++ +.|.+.++.+.+.++..++..++.++.|+++|| +|||+++.++..+..+
T Consensus 211 ~~~~~~~~~~~~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~----------- 277 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVIL----------- 277 (381)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHH-----------
Confidence 333444445566787876 469999999999999999999999999999999 5999999888877776
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.+... . . ...+..+.+.+++.+...|+....+.|..|+++ ++.
T Consensus 278 -~~~~~~--~--------------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~ 321 (381)
T PRK03633 278 -GSIAML--S--------------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVA 321 (381)
T ss_pred -HHHHHh--h--------------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHH
Confidence 543221 1 1 123345667777777888999998899887643 667
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
..+.+....++|.++||.++|++.|+.+|++.|.+.+...+++.+..+.
T Consensus 322 ~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 322 MNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 7777778889999999999999999999999999877776655544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=121.79 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc-ccchhhhhHHH--HHHH
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY-IGRFKTITFAS--IAAI 95 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~-~Gr~~~~~~~~--~~~~ 95 (587)
++..+...++..++++....+++.|+. ++|++..+++++.++..++..++.+++|+++||. +++|+..+++. ++..
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 444555566666777778888899975 5899999999999999999999999999999973 23344333332 3223
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.++..+.. +.+.+++.+++.|++.+...++..+++.|.+|
T Consensus 322 l------------~~ll~~~~~--------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~ 363 (455)
T TIGR00892 322 L------------THLLCALAG--------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG 363 (455)
T ss_pred H------------HHHHHHHhc--------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence 3 332222222 55667888999999999999999999999998
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~~~~~~~~ 235 (587)
+++ +++.++++....++|..+||.++|++.+.. +|++.|++.++..+++.+...
T Consensus 364 ~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~ 418 (455)
T TIGR00892 364 AQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA 418 (455)
T ss_pred HHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence 755 899999999999999999999999999887 599999998877666655433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-10 Score=123.78 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc--cchhhhh-HHHHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI--GRFKTIT-FASIAA 94 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~-~~~~~~ 94 (587)
.+|...+..++....++++..++|.|++++.|++..+++++...+.++..++.+++|+++|| + |||+... ....+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence 34555566666677778888999999999999999999999999999999999999999999 6 4444322 222222
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
.+ +.+...+... .+....+....+.|.+..+..+....+..|.+
T Consensus 333 ~~------------~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (452)
T PRK11273 333 TI------------ATIVYWLNPA------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELA 376 (452)
T ss_pred HH------------HHHHHHHhcc------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 22 2211111110 02233333444444433222222334567888
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHH-HhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILI-TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
|++. |++++++.+...++|+.+ +|.+.|++.|..||+..|.+.....+++++...
T Consensus 377 p~~~------~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 377 PKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred Chhh------hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8755 999999999888888755 799999999999999999887776666655543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-10 Score=121.04 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccc
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVT 103 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~ 103 (587)
...++....++.+..++|.|+++.+|++..+.+++..+..++..++.+++|+++|| +||||++.++.++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~------ 317 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILT------ 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH------
Confidence 33344566677888889999998899999999998888889999999999999999 59999988765543320
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
+......... ..+.........+.+++.|...+...++..|.+|++.
T Consensus 318 -----~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 318 -----AYPALSWLVA-----------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred -----HHHHHHHHHc-----------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 1111111000 0022233344455566777777777788999999865
Q ss_pred chhhhhhHHHHHHHH-HHHHHhhhhhhcccccchh
Q 007862 184 GINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWV 217 (587)
Q Consensus 184 ~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~ 217 (587)
|++++++.+...+. ++.++|.+.+++.|..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999997765554 5788999999999987853
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=117.26 Aligned_cols=175 Identities=10% Similarity=0.022 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhh-HHHHHHHHh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-FASIAAILL 97 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~~~ 97 (587)
++......++....+++...++|.|+ +++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~- 300 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGI- 300 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH-
Confidence 44555566677778888888999887 5699999999999999999999999999999999 59998764 33333333
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.+.+.+.... ...+....++..++.|++.++..|. .....|..|+
T Consensus 301 -----------~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~- 346 (402)
T TIGR00897 301 -----------FTLALYYIPQH---------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK- 346 (402)
T ss_pred -----------HHHHHHHHHHc---------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc-
Confidence 22211111100 0013455566777788887776553 4455565442
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.|++++++++...++|..++|.+.+++.+..||+..|++.++..+++.++.++
T Consensus 347 ------~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 347 ------HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999888777666655444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=118.21 Aligned_cols=168 Identities=12% Similarity=0.036 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
......+++.+++|++..+.++......++..++.+++|+++|| +|||+.+.+++++..+ +.++.++
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~------------~~~~~~~ 368 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAI------------CLFVLGI 368 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH------------HHHHHHH
Confidence 33445556677889999889999999999999999999999999 6999999998887777 6555442
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
...... . . ..+..+...+....+..+....+..+....+..|.+|+++ |+++.++....
T Consensus 369 ~~~~~~--~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~ 427 (481)
T TIGR00879 369 LGASFV--T----G---------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAA 427 (481)
T ss_pred Hhhccc--C----C---------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHH
Confidence 110000 0 0 0000022222222233333333345777777899999755 99999999999
Q ss_pred HHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 196 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
.++|.+++|.+.+++.+..+|++.|++.+++.+++.++.++.
T Consensus 428 ~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 999999999999999998899999988877766666655443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-10 Score=119.96 Aligned_cols=172 Identities=7% Similarity=-0.034 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcccc--chhhh-hH---HHH
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG--RFKTI-TF---ASI 92 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--r~~~~-~~---~~~ 92 (587)
++......++....++++..+++.|+.+++|++..+++...+++.++..++.+++|+++|| ++ ||+.. .. +.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHH
Confidence 3444444455556666777889999989999999999999999999999999999999999 52 22222 22 111
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +...... . +........++.|++..+.........+|
T Consensus 324 ~~~~------------~~~~~~~-~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 364 (434)
T PRK11663 324 LSVG------------SLWLMPF-A--------------------------SYVMQAACFFTIGFFVFGPQMLIGMAAAE 364 (434)
T ss_pred HHHH------------HHHHccc-c--------------------------cHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 1111 1111111 1 12222233333343222222223345678
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.+|+++ |++..++.++..++|..++|.+.+++.+..||+..|++.++..+++.+..+.
T Consensus 365 ~~~~~~------~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 365 CSHKEA------AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred cccHhh------HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 887644 9999999999999999999999999999999999998887776665554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=120.77 Aligned_cols=182 Identities=16% Similarity=0.102 Sum_probs=146.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccch--hhhhHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF--KTITFASIAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~--~~~~~~~~~~ 94 (587)
|.+..-++.-++.+=+...+......|.++++|++.++...+..+..+...++++++|++.|| +|.| ++++++++++
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILW 359 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHH
Confidence 455555666677788888899999999999999999999999999999999999999999999 6999 9999998877
Q ss_pred HHhhhcccccccccceEE-EeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 95 ILLAEHFVTKYQGKGMLT-VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
.+. .... .++... .. .-.+.+.+++.-++.|+..|+.++.+-++.++.
T Consensus 360 ~~i-----------~~~g~~G~~~~-------~~-------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L 408 (477)
T PF11700_consen 360 III-----------PLYGLFGFWPS-------FF-------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL 408 (477)
T ss_pred HHH-----------HHHHHHHhhhc-------cc-------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 441 1111 111110 00 012456677777899999999999999999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHh
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.|+.+ .+.+|++|.++.-..+.+||.+.+.+.+..| .|.++....++.++++++++.
T Consensus 409 iP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 409 IPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred CCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99865 7999999999999999999999999998876 788888777777777766544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=120.70 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHH-HHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILN-IWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~-~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+..+...++..++.+......++|+.+++|+|..+.+++.. ...++..++.+++|+++|| +||||.+.++.++..+
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l- 301 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGV- 301 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH-
Confidence 344444455666666666778888988889999999999875 5567899999999999999 5999988877665554
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.+........+ .+...+....++..+..|...+...++..+..+++
T Consensus 302 -----------~~l~~~~l~~~~----------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~ 348 (491)
T PRK11010 302 -----------SNAGYWLLSITD----------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS 348 (491)
T ss_pred -----------HHHHHHHHHhcc----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 322111101000 03333444555555555555566677788888875
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
. +++.+++.+...++|..+++.+.|++.|..||+..|.+..++.+.++++.+..++
T Consensus 349 ~------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 349 F------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred C------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 7888999999999999999999999999999999999888888877776655443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-10 Score=121.13 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=128.8
Q ss_pred cCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHH-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccc-hhhhh
Q 007862 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR-FKTIT 88 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~~ 88 (587)
..+.+||.++....+.++..+.+.......-+|+++ |.+.+.+..|+++++..++..++.+..|+.+.|. |+ |+.++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHH
Confidence 557899999999999999999998888888899776 6889999999999999999999999999999994 76 88888
Q ss_pred HHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccc
Q 007862 89 FASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIP 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 168 (587)
.+.++.++ |.++.......| +....+++.+|++.|+|.|.. ...-.
T Consensus 107 ~s~ii~~~------------g~llY~~l~~~~---------------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~ 152 (488)
T KOG2325|consen 107 VSFLIAII------------GNLLYLALAYVP---------------------NGVKYLMLVARILTGVGVGNF-AVLRA 152 (488)
T ss_pred HHHHHHHH------------HHHHHHHHHhcc---------------------cchHHHHHHHHHHcCcCcccH-HHHHH
Confidence 88888888 888763323222 125688999999999998874 45778
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhc
Q 007862 169 FGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 210 (587)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i 210 (587)
|++|.-..++ |.++++....+..+|..+||.+...+
T Consensus 153 Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 153 YIADASTVED------RPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 8888655544 88888887777777777777765443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=107.25 Aligned_cols=81 Identities=9% Similarity=-0.129 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc---------
Q 007862 143 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS--------- 213 (587)
Q Consensus 143 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~--------- 213 (587)
.++..++++.+++|.|.+..+++.++++++..|+++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 378899999999999999999999999999998754 88899999999999999999999987632
Q ss_pred -------cchhhHHHHHHHHHHH
Q 007862 214 -------VSWVIGFGIPTVLMIG 229 (587)
Q Consensus 214 -------~~w~~~f~i~~~~~~~ 229 (587)
..|+++|++.+.+..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 4689998855444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=115.52 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=140.4
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-cchhhhhHHH-HHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFKTITFAS-IAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Gr~~~~~~~~-~~~ 94 (587)
|.+|++-...++-.+.=|++.-+.|+|+.++.|+|..++++..+.|=.+...+++++||+|||.+ |||...-+-+ ++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 66788888888888888999999999999999999999999999999999999999999999998 7776544333 333
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
++ +.+..-++. +.+..+.......+|+-.-+..-.+-....|..
T Consensus 332 ~~------------~~~~~w~~~------------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~ 375 (448)
T COG2271 332 TA------------SLVLYWLAP------------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFV 375 (448)
T ss_pred HH------------HHHHHHcCC------------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence 33 333333333 125677777777788776666666666778888
Q ss_pred CCCCcccccchhhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
|++. -|++.++...+..+ |+..+....+++.|.+||...|.+-.+..+++.++++.
T Consensus 376 pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 376 PKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred cHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 8754 89999999999988 99999999999999999999998866666655555433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=114.67 Aligned_cols=185 Identities=14% Similarity=0.003 Sum_probs=146.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
-|..|...+..+..--++.++...++.|++.+++.++.+++.+...+.....+..+++|++||| +|.+|+.++..+.++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 4677888888888888889999999999999999999999999999999999999999999999 599999999999888
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.....+..... .+ ..+...++..-+.+++..|.-......++...|+
T Consensus 296 ~------------~~~~l~~~~~~~--------~~-----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~ 344 (417)
T COG2223 296 L------------AAALLSLFLTGF--------GH-----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP 344 (417)
T ss_pred H------------HHHHHHcccccc--------cc-----------CcchHHHHHHHHHHHHHhccCcchheeechHHHH
Confidence 8 666555432100 00 0134445555555666666666667777888887
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhccc
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
++ -+...++.....++|+..-|...+...+..| +...|++.....+++.++.+..+.
T Consensus 345 ~~-------~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 345 KE-------TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred hh-------hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 6888999999999999999999888888777 889999888888777776555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=117.54 Aligned_cols=168 Identities=14% Similarity=-0.024 Sum_probs=109.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhccccccc
Q 007862 27 TFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQ 106 (587)
Q Consensus 27 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~ 106 (587)
++....+|++..++|.|+.+++|.+..+.+...++...+..++.++.|+++|| +|||+++.++.++..+
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~---------- 321 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAAL---------- 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH----------
Confidence 34467788899999999999999999999998888888888999999999999 6999988877665433
Q ss_pred ccceEEEee-eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccch
Q 007862 107 GKGMLTVTL-TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 185 (587)
Q Consensus 107 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (587)
....... ... ..+....+....+..++.+...+....+..|.+|++. |
T Consensus 322 --~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r 370 (432)
T PRK10406 322 --FTVPILSALQN-----------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------R 370 (432)
T ss_pred --HHHHHHHHHHc-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------c
Confidence 2111110 010 0011111111122223333334556677899999865 9
Q ss_pred hhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 186 NSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 186 ~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
++++++.|...++ .+...|.+.+++.+...|...+.+.++..+++++..++
T Consensus 371 ~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 371 ALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999977654 34458888886643333555666555555555444443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-09 Score=109.02 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=117.5
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeecc
Q 007862 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAW 118 (587)
Q Consensus 39 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 118 (587)
....|..+.|| |...+-|...+|..++......+-|+.|+ +|-|-+.+++.++.++ |...=..+..
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~i------------Ga~Ir~iss~ 131 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGI------------GAWIRLISSL 131 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHH------------HHHHhhhccC
Confidence 34457778888 88888999999999999999999999999 5999999999999999 8776554432
Q ss_pred CCCCCCCCCCCCCCCCCcccCCcchhHH--HHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHH
Q 007862 119 LPQLHPPKCDVAKPPFGQCKSANSMQLG--VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196 (587)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (587)
|.+.+ +++ +...|-.+.+..+-.+.....-..+-+|++++ |..+-..-.+..
T Consensus 132 -p~v~~-------------------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n 185 (480)
T KOG2563|consen 132 -PFVPP-------------------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGN 185 (480)
T ss_pred -ccccc-------------------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcc
Confidence 21111 333 66788888888887777766677777899877 888888777777
Q ss_pred HHHHHHHhhhhhhcccc------cchhh--HHHHHHHHHHHHHHHHHhccce
Q 007862 197 TVVILITQTVLVYIQDS------VSWVI--GFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 197 ~~g~~i~~~~~~~i~~~------~~w~~--~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
.+|.+++.++...+..+ .+|.. .|....++..+.++++.+.+++
T Consensus 186 ~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 186 PLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred hHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78888887777766543 34654 3554444444444555554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-09 Score=110.91 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=145.2
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.++..+...++..-+.|...+++-+++++..|+|.+..++++..+.++..++.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 456778888888889999999999999999999999999999999999999999999999999 888888888777777
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+.+.+... +........++.|++.+.....-..-.++..|+
T Consensus 289 ------------~~l~l~~~~~-------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~ 331 (394)
T COG2814 289 ------------ALLALTFTGA-------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD 331 (394)
T ss_pred ------------HHHHHHHhcc-------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence 5555555442 445555555556666665555555555553333
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
.++.+.+++...+|+|..+|..++|.+.|++|+....++.+++.++++++.+...+.
T Consensus 332 -------~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 332 -------AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999999999999999888887665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-08 Score=107.28 Aligned_cols=161 Identities=15% Similarity=0.106 Sum_probs=114.3
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc--cc-chhh-hhHHHHHHHHhhhcccccccccceEEEee
Q 007862 40 FMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY--IG-RFKT-ITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 40 ~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~--~G-r~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
...|+++++|+++++.....+...+--.+ -++.|.++|-+ +| |||- ++++.++..+ +.+.+++
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~------------~~~~~~~ 78 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAV------------SALVLAL 78 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHH------------HHHHHHh
Confidence 44578899999999988766665554444 46679999984 12 4444 4455555533 3333332
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
... ...+.....+..++..+|....-.++-+.++|....+. +.|+...++.+..
T Consensus 79 ~~~----------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p----~~~g~lqS~~~~~ 132 (433)
T PF03092_consen 79 LPA----------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP----ESRGDLQSFVWGV 132 (433)
T ss_pred ccc----------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC----chhHHHHHHHHHH
Confidence 221 01134455667788899999999999999999886543 2388999999999
Q ss_pred HHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 196 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
.++|.+++..++|++.+..++++.|.+...+..+.++..++..+
T Consensus 133 ~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 133 RSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999987766666554444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=115.94 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=120.1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH-
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL- 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~- 96 (587)
.++......++.....+++..++|.|++++.|+|..+++++..+..+...++.+++|+++|| +|+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence 34555556666667778888999999999999999999999999999999999999999999 5765433333222111
Q ss_pred -hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 97 -LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 97 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
. +.+...+... .+........++.|++..+..........|.+|
T Consensus 331 ~~-----------~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 375 (438)
T TIGR00712 331 TI-----------AVIVYWMNPA------------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAP 375 (438)
T ss_pred HH-----------HHHHHHhcCC------------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcC
Confidence 0 1111111110 022222333344444332222222235678888
Q ss_pred CCCcccccchhhhhhHHHHHHHHHH-HHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+++ |+++.++++...++|+ +++|.+.|++.+..||...|.+.....+++++..++..+
T Consensus 376 ~~~------~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 376 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhh------eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 755 9999999998888874 789999999999999999998877666666665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.7e-11 Score=130.75 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
..+....+-....++.......-+.++++++.++.|++.+.+-++..+..++..|+++|. -|-|-+-++.+++.+
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~---- 80 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGL---- 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHH----
Confidence 333333333366677777777789999999999999999999999999999999999994 899999999999999
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCC-----CCCCCCcc-------------------cCCcchhHHHHHHHHHHHH
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDV-----AKPPFGQC-------------------KSANSMQLGVLVMGLGLLS 156 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~g 156 (587)
|.++.++-..+..-+.+.... ...+.-.| +...+.-+.+++++.++.|
T Consensus 81 --------g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~G 152 (539)
T PF03137_consen 81 --------GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIG 152 (539)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred --------HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHh
Confidence 999888765543322211100 00001111 2222233578899999999
Q ss_pred hccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc---------------------cc-
Q 007862 157 IGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD---------------------SV- 214 (587)
Q Consensus 157 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~---------------------~~- 214 (587)
+|....++...+|+=|-.++++ -...+++++....+|.++|..+++.... +.
T Consensus 153 iG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG 226 (539)
T PF03137_consen 153 IGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG 226 (539)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred ccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHH
Confidence 9999999999999999988755 7888999999999999999999887531 02
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccee
Q 007862 215 SWVIGFGIPTVLMIGAIILFLVGKKLY 241 (587)
Q Consensus 215 ~w~~~f~i~~~~~~~~~~~~~~~~~~~ 241 (587)
.|...|.+.+++.++..+.++...|+.
T Consensus 227 AWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 227 AWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 388888887776666655555544443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=103.72 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=137.3
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+.....+|.+..++++..++.+=....-+.++++.+|+|..+++.+.+...+......++.|.++||+ ||+-....+.+
T Consensus 260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~ 338 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC 338 (459)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence 34556789999999999999988888899999999999999999999999999999999999999995 99998888877
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..++ +...+.++.+ .-+.+..++|+.+...-....+.++-
T Consensus 339 ~~tl~-----------~H~~l~Ft~l----------------------------sPy~~m~~lGLsysllAcslWP~va~ 379 (459)
T KOG4686|consen 339 ILTLL-----------GHSGLFFTFL----------------------------SPYTSMTFLGLSYSLLACSLWPCVAS 379 (459)
T ss_pred HHHHH-----------HhhhHHhhhc----------------------------cHHHHHHHHhhhHHHHHHHHhhhhhh
Confidence 76664 5555555442 23566677788777766667788888
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc---hhhHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPTVL 226 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~---w~~~f~i~~~~ 226 (587)
..|+++ .|++++..+...|+|-++-|++.|.|.|+-| |--.|.+....
T Consensus 380 ~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 380 LVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred hCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 888866 9999999999999999999999999998644 54455554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-09 Score=113.75 Aligned_cols=164 Identities=14% Similarity=0.102 Sum_probs=110.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchh-------hhhHHHHHHHHhhhc
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFK-------TITFASIAAILLAEH 100 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~-------~~~~~~~~~~~~~~~ 100 (587)
+.....+.+..+++.|+.+++|++..+++.+..+..++..++.+++|+++|| +|||+ ...++.++..+
T Consensus 263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i---- 337 (476)
T PLN00028 263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGV---- 337 (476)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHH----
Confidence 3334445566778899999999999999999999999999999999999999 58762 22222222222
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
..++..... +....+...++.+++.++..+...+++.+..|
T Consensus 338 --------~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 378 (476)
T PLN00028 338 --------FCIWLGRAN--------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR----- 378 (476)
T ss_pred --------HHHHhcccc--------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-----
Confidence 222222221 33334445555666665555556666666544
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhcc
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGK 238 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~ 238 (587)
+.|+...++.....++|+.+++.+.+ ..+..+|+.+|.+.+++.+++.++.++.+
T Consensus 379 --~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 379 --RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred --hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 23889999887777888887777654 33445799999988877777766655543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=112.05 Aligned_cols=157 Identities=10% Similarity=0.041 Sum_probs=111.1
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccC
Q 007862 40 FMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWL 119 (587)
Q Consensus 40 ~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 119 (587)
..+++.+++|++..+..+......+...++.+++|+++|| +|||++++++.++..+ +.+.+......
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v------------~~~~l~~~~~~ 359 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAI------------GMFSLGTAFYT 359 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHH------------HHHHHHHHHhc
Confidence 3345567889988877877777888888999999999999 5999999999998888 66555432110
Q ss_pred CCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccc-ccccccccccccCCCCCcccccchhhhhhHHHHHHHH
Q 007862 120 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGG-IRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 198 (587)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 198 (587)
+ ... .......++.+++.+. ..|+...++.|.+|+++ |++++++.+...++
T Consensus 360 ~---------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~ 411 (479)
T PRK10077 360 Q---------------------APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWI 411 (479)
T ss_pred C---------------------ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHH
Confidence 0 001 1223333444444433 34778899999999755 99999999999888
Q ss_pred HHHHHhhhhh------hcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 199 VILITQTVLV------YIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 199 g~~i~~~~~~------~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
|..+++.+.+ ++.+..+|++.|++.++..+++.++.++.
T Consensus 412 g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 8888755544 44567889988888776666665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=109.82 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=120.2
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHH--hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLK--EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
..+......++.-.+--++..+++.|+.+ .+|++..+++...+.+.++..++.+++++++|| +|+||++.++.++.+
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence 33433333333333445677789999985 379999999999999999999999999999999 699999998888877
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.++..... +.. ...+..+.|++.+.+.|...+...+.+|
T Consensus 220 ~------------~~~l~~~~~--------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~ 260 (310)
T TIGR01272 220 L------------LSIGAALTH--------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALG 260 (310)
T ss_pred H------------HHHHHHHcC--------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7 543322211 111 2235557899999999999999999888
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 226 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~ 226 (587)
++. +++.++. ....+|+++.|.+.|.+.|..|.+.+|+++.+.
T Consensus 261 ~~~-------~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 261 RHT-------SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hhh-------hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 632 3344443 567899999999999999999999998865544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-09 Score=113.08 Aligned_cols=163 Identities=11% Similarity=-0.033 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHH-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhh-hHHHHHHHH
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI-TFASIAAIL 96 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~-~~~~~~~~~ 96 (587)
.+......++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++|| +|||+.. .+..++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~ 322 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAA 322 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHH
Confidence 3445556667777788899999999976 357888999999999999999999999999999 6987753 333333333
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+..+..... +....+.+.++.++|.....+.......|.+|+
T Consensus 323 ------------~~~~~~~~~--------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 364 (412)
T TIGR02332 323 ------------GWLLASATD--------------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL 364 (412)
T ss_pred ------------HHHHHHhcC--------------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch
Confidence 321111111 111122222233344433334444445666776
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVL 226 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~ 226 (587)
++ |++++++.+...++|.+++|.+.+.+.+..| |++.|++..+.
T Consensus 365 ~~------~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 365 QA------RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HH------HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 44 9999999999999999999999999999874 99998866553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=104.39 Aligned_cols=131 Identities=13% Similarity=-0.067 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhhCC-------ChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 35 GLLANFMVYLLKEYHM-------NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 35 ~~~~~~~~yl~~~~~~-------s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
.++..+|+|+++..+- +++-.+...++..+...+..|.-|-++|+. |+||-.+..+....+.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~---------- 101 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGII---------- 101 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHH----------
Confidence 3567789999987765 234556677777788888899999999995 8877766655554441
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
.+..+.++. +..++...++...+..++..+......++..|..++++ .++
T Consensus 102 -~~~~L~~i~-----------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~r 151 (438)
T COG2270 102 -STFLLWFIP-----------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGR 151 (438)
T ss_pred -HHHHHHHhC-----------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCc
Confidence 444444433 11366777888888899999999999999999998865 444
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 007862 188 FFNWYYTTFTVVILITQTV 206 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~ 206 (587)
..+.-|....+|+.+.-+.
T Consensus 152 iS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 152 ISGLGWALGYLGSVILLIF 170 (438)
T ss_pred ccccccccccccchHHHHH
Confidence 4455455556666655444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-09 Score=110.64 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHH-H-HHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA-S-IAAI 95 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~-~-~~~~ 95 (587)
.++.+....++.....+++..+++.|+.+++|++..+.+.+.....++..++.+++|+++||..+||+..... . .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3445555666666677778888999999999999999999999999999999999999999842333332221 1 1112
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +........ ..+.....+..++.|+..++..+....+..|.+|
T Consensus 297 ~------------~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 340 (379)
T TIGR00881 297 V------------SLLVYWLNP------------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAP 340 (379)
T ss_pred H------------HHHHHhcCc------------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 2 111111110 0133344555566666555666666678889998
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGF 220 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f 220 (587)
++. |+++++++....++|..++|.+.|++.+.+||++.|
T Consensus 341 ~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 341 KKA------AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred cch------hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 755 999999999999999999999999999999998765
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=111.90 Aligned_cols=170 Identities=10% Similarity=0.016 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+..+...++.....+....++++|+.+.+|.+..+.+.+.....++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i--- 277 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVL--- 277 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHH---
Confidence 333333344444555556677888888899999999999999999999999999999999 6999999998887777
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.++...... +.+.......+.++|.++..+.......+..++.
T Consensus 278 ---------~~~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-- 321 (382)
T PRK10091 278 ---------ALLMLFFFGG-------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGG-- 321 (382)
T ss_pred ---------HHHHHHHHHh-------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc--
Confidence 6543332110 2233444444555655554443333333333321
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc-cchhhHHHHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~ 234 (587)
+.++.. ......++|..+||.++|++.|. .+|+..+.+.++...+++...
T Consensus 322 ---~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 322 ---ELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred ---hHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 123333 33567789999999999999885 789999988776655554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-09 Score=110.50 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=124.7
Q ss_pred chhHHHHHHHHHHHHhhhhH-HHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 18 AMPYILGNETFERLATIGLL-ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
.++......++....+++.. ...+.|.++.+|.+..+.+.+..+..++..++.++.|++.|| +|||+.+..+.++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence 44555555666666666666 566777776799999999999999999999999999999999 5999999888776666
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.....+.. . +.+.+++..++.|++.+...+....++.|.+|+
T Consensus 290 ------------~~~~~~~~~------------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (365)
T TIGR00900 290 ------------AILVVGLTP------------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA 332 (365)
T ss_pred ------------HHHHHHhhc------------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 544433322 0 256677888999999999999999999999997
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS 215 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~ 215 (587)
++ |++.+++++...++|..++|.++|++.|.+|
T Consensus 333 ~~------~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 333 EL------LGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54 9999999999999999999999999987654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-07 Score=102.37 Aligned_cols=361 Identities=14% Similarity=0.093 Sum_probs=209.3
Q ss_pred hhHHHHHHHHHHHHhhhhH---HHHHHHHHHhhCCChhhHH-HHHH----HHHHHHHHHhhhhHHHhhccccchhhhhHH
Q 007862 19 MPYILGNETFERLATIGLL---ANFMVYLLKEYHMNQTSAA-NILN----IWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~---~~~~~yl~~~~~~s~~~~~-~i~~----~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 90 (587)
+..+....+++.++.+... .+...+.....+.+..... .... ...+...+..++-|.++||+ |||..+.+.
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~ 98 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLP 98 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHH
Confidence 3445555566666665444 5566665555544322222 2222 23567888999999999995 999999999
Q ss_pred HHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccc
Q 007862 91 SIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 170 (587)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 170 (587)
++...+ ..+...+.. ++.++ ..=..-+.+++.....+++
T Consensus 99 ~~~~~l------------~~~~~~~~~---------------------------~~~~~--~~~l~g~~~~~~s~~~a~v 137 (463)
T KOG2816|consen 99 LFGTIL------------PALCLLFQG---------------------------YWFFL--LLGLSGGFSAIFSVGFAYV 137 (463)
T ss_pred HHHHHH------------hHHHHHHHH---------------------------HHHhh--hcccccchhhhhhhhhhhe
Confidence 998877 444433321 11111 1122344556667788889
Q ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCCh
Q 007862 171 VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSI 250 (587)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
+|....++ |...+++.......+..++|.+++++.+..|....|.++.++.+++++..++..|+...++.+..
T Consensus 138 adis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~- 210 (463)
T KOG2816|consen 138 ADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD- 210 (463)
T ss_pred eeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-
Confidence 99888754 99999999999999999999999999999999999999999988888776665554322111100
Q ss_pred hhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce
Q 007862 251 FSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ 330 (587)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 330 (587)
...++ ...+++..+- .. .+++.. .
T Consensus 211 ----------------~~~~~---------------------~~~~~~~~~~----~~-------------~~~~~~--~ 234 (463)
T KOG2816|consen 211 ----------------ATLRE---------------------LTPGSLDSSH----VA-------------DAFQSL--T 234 (463)
T ss_pred ----------------ccccc---------------------cCCCcccchh----hh-------------hhhhhh--c
Confidence 00000 0000000000 00 000000 0
Q ss_pred eeehhhhhhhhhHHHHHHHHHHhhhcccc-ceeeeeeccccccCCCccccCc---ccccccchhhhhhhhhchhhhhHH-
Q 007862 331 QVEEVKCLIKIIPIWAAGIISLTSISQQG-TFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVP- 405 (587)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~---~~~~~i~~i~~~l~~~l~~~l~~~- 405 (587)
+....|..+.++. ......+....+.. ..+++. +... ...+ +.+.....+...+.+.+ ..|
T Consensus 235 ~~~~~r~~l~l~l--~~~~~~~~~~~~~~~~~~~yl----~~~f----~w~~~~~s~~~~~~~~~~~i~~l~----~~~~ 300 (463)
T KOG2816|consen 235 KVGPDRLLLLLLL--VAFLSSLPEAGGASDVLLLYL----KAKF----GWNKKEFSDLLSLVSILGIISQLL----LLPL 300 (463)
T ss_pred ccCCCccchHHHH--HHHHHHHHHhcCceeEEEEEE----eeec----CcCHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 1112222222221 11122222222211 111111 1111 1111 22222333333333332 222
Q ss_pred HhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 007862 406 ALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK 485 (587)
Q Consensus 406 l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~ 485 (587)
+.+.++.+ +.+..|+..-.+...+.++... .|......+......+..|..-+++..
T Consensus 301 l~~~l~~~-------~~i~lGl~~~~~~~~~~af~~~----------------~w~~~~~~v~~~~~~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 301 LSSILGEK-------RLISLGLLSEFLQLLLFAFATE----------------TWMMFAAGVVVALAGIVFPAIRAFASI 357 (463)
T ss_pred HHHHHhhh-------hHhhHHHHHHHHHHHHHHHhcc----------------chhhhHHHHHHHhhcchhHHHHhHHHh
Confidence 23334322 3678888888888888887632 234344445556667888999999999
Q ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 486 QFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 521 (587)
Q Consensus 486 ~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~ 521 (587)
....+.+|+..++......+.+.+++.+-..+...+
T Consensus 358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999998877776544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-09 Score=111.05 Aligned_cols=166 Identities=7% Similarity=-0.027 Sum_probs=127.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++..+...++....+.+...+++.|+. +.|.+..+.+.+.++..++..+...+.|++.|| +|+|+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 34455555566666777777788888885 699999999999998888888999999999999 5999999999988887
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++.+.+. +.+.+++..++.|++.+...+....+..+. ++
T Consensus 283 ------------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~ 323 (382)
T PRK11128 283 ------------RWGLMGSTT--------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG 323 (382)
T ss_pred ------------HHHHHHhhh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH
Confidence 665544433 667778889999999998888888877775 43
Q ss_pred CCcccccchhhhhhHHH-HHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 230 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~ 230 (587)
++ +++.++.+. ....+|..+||.++|++.|..|+. .|++.+++.+++
T Consensus 324 ~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 324 SE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 22 677888776 455778899999999999998874 455544444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=113.90 Aligned_cols=160 Identities=13% Similarity=0.016 Sum_probs=120.6
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.++......++..++++......+.|++..+| +..+.+++..+..++..++.+++|+++|| +|||+++.++.++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~- 299 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL- 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH-
Confidence 34455556666666666554444555544555 56677788888889999999999999999 5999999999888777
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.+...+... +...+++..++.+++.+...+...++++|..|.+
T Consensus 300 -----------~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (437)
T TIGR00792 300 -----------GYLIFFFAGS-------------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYG 343 (437)
T ss_pred -----------HHHHHHHcch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6554433211 4455667778889999999999999999998754
Q ss_pred Cc-ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 178 TD-EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 178 ~~-~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
+. .+.+.++++++++.+...+|..+++.+.|++.+..||
T Consensus 344 ~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 344 EWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 31 2345579999999999999999999999999876666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=107.94 Aligned_cols=172 Identities=11% Similarity=-0.076 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+.......+.....+......+.|+.+++|.+..+.++......++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~--- 293 (406)
T PRK15402 218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVA--- 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH---
Confidence 333333334445555556667888888999999999988888888888999999999999 5999999998887776
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.++..+..... ..+...++.+.++.++|.+...+.......+..| +
T Consensus 294 ---------g~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~-- 340 (406)
T PRK15402 294 ---------GLLLAALATVIS---------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V-- 340 (406)
T ss_pred ---------HHHHHHHHHHcc---------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c--
Confidence 665554422100 1144556788888999999887766665443322 2
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
.|++..+.+++...+|..+|+.+.+++.+..++....+...+..++.+.
T Consensus 341 ----~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 341 ----SKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999998887876655555544444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=112.45 Aligned_cols=158 Identities=11% Similarity=-0.048 Sum_probs=121.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.+...+...++...++.......+.|++..+|.+..+.+++.....++..++.++.|+++|| +|||+++.++.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 345556666777777766556667777777899999999999988888888888999999999 5999999988887776
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++..+... ..+...+.+..++.|++.+...+....+..+.+|+
T Consensus 340 ------------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 384 (471)
T PRK10504 340 ------------VSLLFMLVAL-----------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD 384 (471)
T ss_pred ------------HHHHHHhccc-----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 4433332210 01233345566777888888888888888888887
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
++ +++.++++++...+|..+|+.+++.+.+..++
T Consensus 385 ~~------~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 385 NL------ASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred Hh------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54 89999999999999999999999988766554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.5e-09 Score=110.23 Aligned_cols=167 Identities=8% Similarity=0.021 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEY---HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+......++....+......++.|+...+ +.+....+.+.++..+...++.++.|++.|| +|||+.+.++.++..+
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHH
Confidence 33333333333444444456778887766 5566778888888888889999999999999 6999999999888877
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+..+..... +.+.++...++.+++.+........+..+.+++
T Consensus 297 ------------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 338 (396)
T TIGR00882 297 ------------RIIGSSFAT--------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV 338 (396)
T ss_pred ------------HHHHHHhcC--------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 665444433 455667778888888765555555555665655
Q ss_pred CCcccccchhhhhhH-HHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNW-YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 231 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~ 231 (587)
+ .+++.++. +.....+|..+++.++|++.|..||+..|.+.++...+..
T Consensus 339 ~------~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 339 R------LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred c------eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3 36666666 4577899999999999999999999999988666654443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-08 Score=108.98 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=152.7
Q ss_pred CCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH
Q 007862 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 93 (587)
..-|.++.++....+....+.+......+-+.+.++++.++.|+|.+.+-++..+...+..|.+-|. =|-|.+-++.++
T Consensus 93 ~~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~ 171 (735)
T KOG3626|consen 93 ANIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVL 171 (735)
T ss_pred cCcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhH
Confidence 3446677777777777777778888888899999999999999999999999999999999999994 888888888888
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCC--------------------------CCCCCCCCCCCccc-CCcchhHH
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHP--------------------------PKCDVAKPPFGQCK-SANSMQLG 146 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~-~~~~~~~~ 146 (587)
+.+ |.++.++-.++..-+. ..|.+.+. -..|. ..++.-+.
T Consensus 172 m~l------------gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 172 MGL------------GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPE-NSKREKESTSYPFL 238 (735)
T ss_pred HHH------------HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCC-cccccccCCchhHH
Confidence 766 5544444321111000 00100000 00111 11222345
Q ss_pred HHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc--------------
Q 007862 147 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-------------- 212 (587)
Q Consensus 147 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-------------- 212 (587)
+++++.++.|+|...+.+...+|+=|-..+++ -...+++.+....+|.++|.+++++...
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~ 312 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITP 312 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCC
Confidence 88999999999999999999999999877644 7889999999999999999999988631
Q ss_pred ----c-cchhhHHHHHHHHHHHHHHHHHhcccee
Q 007862 213 ----S-VSWVIGFGIPTVLMIGAIILFLVGKKLY 241 (587)
Q Consensus 213 ----~-~~w~~~f~i~~~~~~~~~~~~~~~~~~~ 241 (587)
+ ..|...|++.+.+.++..+.+++..+..
T Consensus 313 ~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 313 TDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 1 2388899998888877777766655544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.8e-09 Score=114.04 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=104.9
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCChhhHHH------------HHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 28 FERLATIGLLANFMVYLLKEYHMNQTSAAN------------ILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 28 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~------------i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
+..+.+|++..++|.++ ++.|++..+.+. ...+..++..++.+++++++|| +|||++++++.++..
T Consensus 299 ~~~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~ 376 (502)
T TIGR00887 299 LLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILT 376 (502)
T ss_pred HHHHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHH
Confidence 34556778777777777 477887543221 1223334555677889999999 699999988887766
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +..+.++..... + +...+.+..+...++..+..+....+.+|.+|
T Consensus 377 ~------------~~~~l~~~~~~~--------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 377 V------------LFFVLGFAYNHL--------------------S--THGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred H------------HHHHHHHHHHhc--------------------c--hhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 6 444333321000 0 11111211122223333445666777899999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc----------cchhhHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS----------VSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~----------~~w~~~f~i~~~~~~~~~~~ 233 (587)
++. |+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 423 ~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 423 TRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred hhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 855 99999999999999999999999998873 34455666666555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-09 Score=109.27 Aligned_cols=145 Identities=10% Similarity=0.016 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+......++....++.+..+++ ++.+++|.+..+.+.+.....++..++.+++|+++|| +|||+.+....+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~--- 327 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVF--- 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHH---
Confidence 3444455566666666666666 7788999999999999999999999999999999999 5999555444443333
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
..++..... +...++...++.|++.++..+...+++.|.+|+++
T Consensus 328 ---------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 371 (398)
T TIGR00895 328 ---------AVLVGSTLF--------------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI- 371 (398)
T ss_pred ---------HHHHHHHhh--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-
Confidence 222211111 34556777788999999999999999999999755
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhc
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYI 210 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i 210 (587)
|++++++.+....+|..+||.++|++
T Consensus 372 -----~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 372 -----RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999876
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.5e-09 Score=112.75 Aligned_cols=156 Identities=12% Similarity=0.017 Sum_probs=127.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++......++..+.+++....++.|+++.+|++..+++++.....++..++.+++|++.|| +|||+++.++.++..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 345555666777778888888899999999999999999999999999999999999999999 6999999999888877
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+..+..+... +..+...++...++.|+|.|...+.......+.+|+
T Consensus 334 ------------~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~ 379 (485)
T TIGR00711 334 ------------GFYWRAFTFT----------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP 379 (485)
T ss_pred ------------HHHHHhccCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 6655442111 011345566677889999998887777777788886
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 213 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~ 213 (587)
++ |+++.+++....++|..+|+.+.+.+.++
T Consensus 380 ~~------~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 380 HK------IARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 99999999999999999999999888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=109.76 Aligned_cols=177 Identities=12% Similarity=0.006 Sum_probs=122.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhh--------h
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI--------T 88 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~--------~ 88 (587)
+.++......++....++.+..++|.|+.+++|.+..+.+++..+..++..++.+++|+++|| +++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence 446677777888888889999999999999999999999999999999999999999999999 4755332 1
Q ss_pred HHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccc
Q 007862 89 FASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIP 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 168 (587)
.+..+... +......... . .+....++...+.+.+.++..+....
T Consensus 340 ~~~~~~~~------------~~~~~~~~~~-~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~ 384 (465)
T TIGR00894 340 NGIGGLGP------------GIFAYALPYL-S----------------------AAFYLTIIILTLANAVSSGPLAGVLI 384 (465)
T ss_pred HHHHHHHH------------HHHHHHHHHc-C----------------------CchHHHHHHHHHHHHHhhhhhhhhhh
Confidence 11111111 1000011000 0 02233344444555555555555555
Q ss_pred cccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc---cchhhHHHHHHHHHHHHHHHHHh
Q 007862 169 FGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS---VSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~---~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
...|..|. .++...++.....++|+.++|.+.+++.+. .+|...|.+.++..+++.++...
T Consensus 385 ~~~~~~~~-------~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 385 NSLDLAPR-------FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred chhhcChh-------HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 55565553 389999999999999999999999998764 34888998887777776655433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=107.34 Aligned_cols=175 Identities=15% Similarity=0.040 Sum_probs=124.9
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
.++..+...++...+......+.++|+. |.|++..+.+++...... ...++.+++|++.|| +|+||++.++.++..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLV-DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHH-hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 3455566666777777777778888876 579999999999888765 556778999999999 5999999887766533
Q ss_pred hhhcccccccccceE-EEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 97 LAEHFVTKYQGKGML-TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
..+ ......... ..+...+.....+.+++.|...+...+...+..+
T Consensus 287 ------------~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 333 (390)
T TIGR02718 287 ------------LALLWFAQAAFWL---------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG 333 (390)
T ss_pred ------------HHHHHHHHHHccc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 211 111111000 0022333444455566777777777777777766
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
++ +.+++.+++.....++|..++|.++|++.|..||+..|.+.+++.+++++
T Consensus 334 ~~-----~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 334 DG-----DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred cc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 41 23899999999999999999999999999999999999887766655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=106.95 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=134.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.+...++..++..+++......++.|++..+|.+ ...+++..+..+...++.++.++++|| +|+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 56677778888888888877777777777778877 567788888899999999999999999 5999999999999999
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++..+... .+.+.+++...+.|++.|...+...++++|..|.
T Consensus 303 ------------~~~~~~~~~~------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~ 346 (428)
T PF13347_consen 303 ------------GFLLLFFLGP------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDY 346 (428)
T ss_pred ------------HHHHHHHHHh------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence 7776665431 1678888999999999999999999999999997
Q ss_pred CCcc-cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 177 TTDE-GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 177 ~~~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
++.+ ++++.+..++.+.....++..+++.+.+.+.+..|+
T Consensus 347 ~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 347 DEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 5533 455678888999999999999999998887655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=107.46 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
+.+..+++.|+.+ .|.+..+.+.+.....++..++.+++|+++|| +|||+++..+.++..+ +.+..
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~------------~~~~~ 313 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFL------------FIFPL 313 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH------------HHHHH
Confidence 4456678888765 69999999999999999999999999999999 6999999988877655 43322
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
..... .+...+....+..+++..+..+..+.++.|.+|++. |++++++.+
T Consensus 314 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 363 (426)
T PRK12307 314 FRIPQ------------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIY 363 (426)
T ss_pred HHHcc------------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHH
Confidence 21110 011111111222222333334556677889999754 999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccchhhH
Q 007862 194 TTFTVVILITQTVLVYIQDSVSWVIG 219 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~~~w~~~ 219 (587)
...++|..++|.+.+++.+..|+...
T Consensus 364 ~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 364 NLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999999998886653
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=105.95 Aligned_cols=151 Identities=9% Similarity=0.070 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-cchhhhhHHHHHHHHh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFKTITFASIAAILL 97 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Gr~~~~~~~~~~~~~~ 97 (587)
.+.......+....+++...+++.|++ +.|.+..+.+.+.+...++..++.++.|+++|| + +||+++.++.++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~- 275 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLV- 275 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHH-
Confidence 344444555666777888888998886 579999999999999999999999999999999 6 566677777777766
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.+.+.+... + ... ....+.|++.|...|...+.+.+..+++
T Consensus 276 -----------~~~~~~~~~~-------------------------~-~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~ 317 (355)
T TIGR00896 276 -----------GLCGLLFAPM-------------------------H-GLW-AWALVLGLGQGGAFPLALTLIGLRSRQA 317 (355)
T ss_pred -----------HHHHHHHhhh-------------------------h-HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH
Confidence 6544443221 1 111 1346789999999998877777665542
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS 215 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~ 215 (587)
+.++..+++.+...+++..++|.+.|++.|..|
T Consensus 318 -----~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 318 -----AQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 236788888888889999999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-08 Score=107.96 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=126.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHH--hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLK--EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 94 (587)
|..+......++..+.+.......+.|+.. +.+.+....+.+............++.|++.|| .+||+.+.++.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHH
Confidence 345555565666666655555566667653 445667777888888888777888899999999 59999999998877
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
.+ +.+...++.. +.+.+++...+.++|++...|+....+.+..
T Consensus 285 ~~------------~~~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~ 327 (395)
T PRK10054 285 VI------------GLVGFIFSGN-------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA 327 (395)
T ss_pred HH------------HHHHHHHcch-------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 77 6654443221 4555667788999999988898888899988
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
|++. |+++++... ...+|..+||.++|++.|..|....|++.++...++.++
T Consensus 328 p~~~------~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 328 PPGM------KASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred Cccc------ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 8754 788887543 566899999999999999999888887755544444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.3e-08 Score=102.46 Aligned_cols=162 Identities=9% Similarity=0.053 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
+.......+....++......+.|+.+++|.++.+.+.+.....++..++.+++|+++|| +|||+.+..+.++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~--- 284 (385)
T TIGR00710 209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAV--- 284 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH---
Confidence 333444445555666677777888888999999999999999999999999999999999 5999999888777766
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.+++......+ ......++....+.|+|.+...+.......|.+|+
T Consensus 285 ---------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--- 331 (385)
T TIGR00710 285 ---------SAVLLEITAILG---------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--- 331 (385)
T ss_pred ---------HHHHHHHHHHhc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---
Confidence 554443322100 01334556667778899999999888888887763
Q ss_pred ccccchhhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIP 223 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~ 223 (587)
.+++..+.+...... |+..++. .+.+.+..+|...+...
T Consensus 332 ----~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 332 ----VAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSCL 371 (385)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHHH
Confidence 278899988877654 5555555 44666655666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=104.73 Aligned_cols=170 Identities=13% Similarity=0.149 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG-GVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
..+...++...+........+.|+.+++|++..+.+++..... ++..++.+++|++.|| +|||+.+.++.++..+
T Consensus 213 ~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l--- 288 (402)
T PRK11902 213 ALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAV--- 288 (402)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH---
Confidence 3333334444433333344556778889999999999887655 4578899999999999 6999998877776555
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHH----HHHHhccccccccccccccccCC
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGL----GLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
..+...+....+ .+.+.++... +..+++.+...+....++.+.+|
T Consensus 289 ---------~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 337 (402)
T PRK11902 289 ---------SNLGYWVLAVTP----------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS 337 (402)
T ss_pred ---------HHHHHHHHHhcC----------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 332221111000 0233334333 34566677778888888888777
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
++ .++++....+++..+++.++|++.|.+||+..|.+.+++.++++++.+
T Consensus 338 ~~----------~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 338 AT----------QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 53 234555555777776677899999999999999998887777665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-08 Score=107.32 Aligned_cols=165 Identities=14% Similarity=0.060 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-HHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhh
Q 007862 21 YILGNETFERLATIGLLANFMVYL-LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAE 99 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl-~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~ 99 (587)
..+...++...+.++...+++.|+ ++++|+++.++++....+.++..++.+++|++.|| +||||++..+.++..+
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~--- 337 (438)
T PRK10133 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMA--- 337 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH---
Confidence 344444555566666677888886 45789999999999999999999999999999999 5999999888777665
Q ss_pred cccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc
Q 007862 100 HFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 179 (587)
Q Consensus 100 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (587)
+.++..+.. +. ..+.+..+.|+|.+.+.|...+...+.++++
T Consensus 338 ---------~~~~~~~~~--------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-- 379 (438)
T PRK10133 338 ---------LCLISAFAG--------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-- 379 (438)
T ss_pred ---------HHHHHHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh--
Confidence 443332222 11 1245567789999999999999999998753
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHH
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~ 233 (587)
.+.+.++.. ...+|+.++|.+.|++.+..| -+..|+++.+..+..+..
T Consensus 380 -----~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 380 -----TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred -----hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 234444443 344678888899999998887 788888777665554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=108.66 Aligned_cols=172 Identities=12% Similarity=0.068 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
+..++...++..+....+...+|.+..+++|.+....|++.+++.++..++.++.+++.+| +++++.+..+.+++.+
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~-- 296 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFAL-- 296 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHH--
Confidence 3444444555555555566778888889999999999999999999999999999999999 6999999999998888
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.+.++++. +.+...+..++.|++.........+.+-+..|++.
T Consensus 297 ----------~~~~lal~~--------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~ 340 (524)
T PF05977_consen 297 ----------ALLLLALSP--------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV 340 (524)
T ss_pred ----------HHHHHhcch--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777765 66777888888898888888777777777788754
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
||+.++++.+..+.+..+|..+.|.+.+.+|-+..+.+.++..++..++.+
T Consensus 341 ------~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 341 ------RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-08 Score=117.90 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChh-hHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQT-SAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~-~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
+..+...++.....+.....++.|+.+.+|++.. +.+++..+..++..++.+++|+++|| +++++++.++.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~-- 311 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLAL-- 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHH--
Confidence 3344444444555566777889999999999999 99999999999999999999999999 5999999888887777
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.+++.+.. +...+++..++.|++.++..+...+++.+.+|++.
T Consensus 312 ----------~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 355 (1146)
T PRK08633 312 ----------SLFLLPTAP--------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE 355 (1146)
T ss_pred ----------HHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence 555544433 45667777888999999999999999999998865
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-ccchhhHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTVL 226 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~~~w~~~f~i~~~~ 226 (587)
|++++++.++..++|.++++.+++.+.. .+++...|.+.+.+
T Consensus 356 ------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 356 ------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred ------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999888888776643 23455555554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=109.50 Aligned_cols=153 Identities=8% Similarity=-0.051 Sum_probs=124.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+.......++...++++...+++.|+++.+|.|..+++.......++..++.+++|++.|| +|||+.+..+.++..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~- 337 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSAL- 337 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH-
Confidence 34455566666777778888889999999999999999999999999999999999999999 5999999988888777
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+..++..... ..+.+......++.|+|.|...+.....+.+..|++
T Consensus 338 -----------~~~~l~~~~~-----------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~ 383 (495)
T PRK14995 338 -----------SFYGLAMTDF-----------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE 383 (495)
T ss_pred -----------HHHHHHHhcC-----------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH
Confidence 6554332210 013344566778899999999988888888888875
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 212 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~ 212 (587)
+ ++.+.+.+.+..++|..+|+.+.+.+.+
T Consensus 384 ~------~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 384 K------AAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred h------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999999999988764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=102.43 Aligned_cols=165 Identities=7% Similarity=-0.042 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
++..+...++.....++...++++++.+++|++..+.+.+.....++..++.++.|++.|| .+|+ .+..+.++..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~- 294 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVS- 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHH-
Confidence 3444444445555556666666555567889999999999999999999999999999999 4554 444443333330
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.++..... +.+.+.+..++.|++.+...+.....+.+..|++
T Consensus 295 ----------~~~l~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~- 337 (394)
T PRK10213 295 ----------ALVLTLWGS--------------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ- 337 (394)
T ss_pred ----------HHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-
Confidence 222222222 4456677888899999999998888888877642
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 229 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~ 229 (587)
+++..+.++...++|..+|+.++|++.|..|++..|...++..++
T Consensus 338 ------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 338 ------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 456667777788999999999999999999998888876654433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-08 Score=107.18 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=121.1
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++......++...+++......+.|++..+|.+....++......++..++.++.++++|| +|+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 344555566666666666666666777777888877665555554456677889999999999 5999999999988777
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+...+.. ..+.+.++...++.++|.+...+...++.+|..|.
T Consensus 307 ------------~~~~~~~~~------------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~ 350 (448)
T PRK09848 307 ------------GYLLFFWVS------------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEY 350 (448)
T ss_pred ------------HHHHHHHcC------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 655444322 11455667778889999999999999999999886
Q ss_pred CCc-ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 177 TTD-EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 177 ~~~-~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
++- .+.+.++..++.+.+...+|..+++.+.+.+.+..||
T Consensus 351 ~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 351 GEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 542 2344568899999999999999999998887654444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=116.13 Aligned_cols=182 Identities=8% Similarity=-0.067 Sum_probs=129.3
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++..+...++..+..+++...++.|+.+.+|.+..+++++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 3445555555666667777888999999999999999999999999999999999999999984 777766655554443
Q ss_pred hhhcccccccccceEEEeee--c-cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 97 LAEHFVTKYQGKGMLTVTLT--A-WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
+.+.+.+. . ..+........ .+. ...+.+.++++.++.|++.+...+...+++.+.
T Consensus 304 ------------~~~~l~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 362 (1140)
T PRK06814 304 ------------FGLDLAFASSSVPAEPAQLKSIL------VFL---SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAW 362 (1140)
T ss_pred ------------HHHHHHhcccccccccccccchh------hhh---cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 22211111 0 00000000000 000 001446677888889999999999999999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-ccchhhHHHHHHHH
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTVL 226 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~~~w~~~f~i~~~~ 226 (587)
+|++. |++.++.+.+..++|..+++.+.+.+.+ ..++...|.+.+++
T Consensus 363 ~p~~~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 363 ANPAH------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred CCccc------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99866 9999999999999999999999998874 45667666654443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-08 Score=101.47 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=137.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.+.+-+...++.+=+...+......|-..++|+++++...+.....+...++++++|++.|| +|-|++++++++++.+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence 466666777777777778888889999999999999999999999999999999999999999 6999999999999887
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+..-+.. ....+...=++.|...|+.++.+-++.++..|+
T Consensus 331 ------------~~~~~~~~~--------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~ 372 (438)
T COG2270 331 ------------AALYLIFLE--------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK 372 (438)
T ss_pred ------------HHHHHHHcc--------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 433322222 112234444778999999999999999999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~ 233 (587)
++ -+++|++|.++...++.+||.+.+.+.+-.| -|..+..-.++..+++++
T Consensus 373 ~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 373 GK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred cc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 65 7999999999999999999999999887654 466655444444444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=101.90 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEee
Q 007862 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTL 115 (587)
Q Consensus 36 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 115 (587)
....+|.|+++..| ++.+.+++.++..+.......+.+++.||.++.++.+..+.++..+ +.++++.
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~------------~~~~l~~ 293 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSL------------SMFPIGM 293 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH------------HHHHHHH
Confidence 44567777766555 7788888888877766655555566655435767777788777777 6654444
Q ss_pred eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHH
Q 007862 116 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 195 (587)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (587)
+. +...+.....+.++|.+...|...+.+.|..|+++ |++.++++...
T Consensus 294 ~~--------------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~ 341 (400)
T PRK11646 294 VS--------------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLG 341 (400)
T ss_pred hh--------------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHH
Confidence 33 44455666678888988888999999999999865 99999999999
Q ss_pred HHHHHHHHhhhhhhccccc---c-hhhHHHHHHHHHHHHHHH
Q 007862 196 FTVVILITQTVLVYIQDSV---S-WVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 196 ~~~g~~i~~~~~~~i~~~~---~-w~~~f~i~~~~~~~~~~~ 233 (587)
.++|..+||.++|++.|.. + ....|.+..++.++..+.
T Consensus 342 ~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 342 LALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998763 2 245555544444444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=102.75 Aligned_cols=185 Identities=14% Similarity=0.015 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
..|......++..-+|.+....+|.|+++++. .........+..+...+..+++|+++|| +||+|++.++.++..+
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i- 328 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI- 328 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH-
Confidence 45666666666666666677789999888763 3333333445567788999999999999 6999999999987777
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
+.....+.. |. .++.+...+....+.+.++.|.-......++.+.||+.
T Consensus 329 -----------~~~~~~l~l--p~------------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~ 377 (462)
T PRK15034 329 -----------FSALLFLTL--PG------------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQI 377 (462)
T ss_pred -----------HHHHHHHHh--cc------------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhh
Confidence 432211111 10 01225666666666666777777777888888888741
Q ss_pred Cc---------------ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc-cchhhHHHHHHHHHHHHHHHHHhc
Q 007862 178 TD---------------EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 178 ~~---------------~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
+. ..+++-+...++......+|+++-|.+.+...+. .++...|++..+..++.+++.|..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 378 TIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112467788888888899888888776666554 457888888777777666665543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-06 Score=91.29 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=93.9
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
+....++-.+-+++-++..++ .+|.+ ..+.+..|+.+..+=++..+.. .++|..
T Consensus 409 Gv~~a~~~~gEI~~~ffs~kl----I~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L---------------~n~W~v 462 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKL----IEKIG-------HVNVMYLGLACNVGRFLYYSYL---------------QNPWMV 462 (618)
T ss_pred eehhhhhccchHHHHHHHHHH----HHHhc-------ccceeeehhhHHHHHHHHHHHh---------------cCchhe
Confidence 344455556666666655544 66663 3345666666666666666644 255555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchh
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 540 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~ 540 (587)
++.=++.++..+.+..+..+|+...+|++.|.++.|+.. ...++|..+|+.+.+.+.... +..
T Consensus 463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ 526 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------GAR 526 (618)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------hhH
Confidence 666699999999999999999999999999999999766 556677777776666655321 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007862 541 YFYFLIAGLGGLNIVYFLYCAR 562 (587)
Q Consensus 541 ~~f~~~~~~~~l~~v~~~~~~~ 562 (587)
..|..+++.+++..+.+....+
T Consensus 527 ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 527 TTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5677777777766666655443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.9e-08 Score=101.34 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG-GVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+..++..++..++++.....++.|+++ +|++..+.+.+..+.. +...++.+++|+++|| +||||.+.++.++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~- 287 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQAL- 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH-
Confidence 5566666777788888888999999876 9999999998888766 5677899999999999 6999999988887766
Q ss_pred hhcccccccccceEEEeeec-cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTA-WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.....+.. ... ..++ +..+.+.+....++.+++.+...+...+++.|.+|+
T Consensus 288 -----------~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 340 (356)
T TIGR00901 288 -----------TNAGFVWLASNGH--------------HDGI--TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP 340 (356)
T ss_pred -----------HHHHHHHHHhcCc--------------cccc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 544333221 100 0000 001446677778888999999999999999999998
Q ss_pred CCcccccchhhhhhHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFT 197 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~ 197 (587)
++ |++.+++++...+
T Consensus 341 ~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 341 KF------GATQMALLSSLSA 355 (356)
T ss_pred Cc------cHHHHHHHHHHHh
Confidence 66 9999999877655
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=98.00 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMN-QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s-~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
.+...++..+.++....+++.|+.+++|.+ ..+.+.+..+..+...++.++.|+++|| +|+|+...+......+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---- 285 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLIL---- 285 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH----
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH----
Confidence 445555555677778888999999999999 8999999999999999999999999999 6998888887777766
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+.+...+... ..+....+...++.|++.+...+....++.|.+|+++
T Consensus 286 --------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 332 (352)
T PF07690_consen 286 --------GALGLLLLPF-----------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY-- 332 (352)
T ss_dssp --------HHHHHCCSHH-----------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH--
T ss_pred --------HHHHHHHHHH-----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence 5554444331 1145566678888999999999999999999998755
Q ss_pred cccchhhhhhHHHHHHHHHHHHHh
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQ 204 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~ 204 (587)
|++..+......++|..++|
T Consensus 333 ----~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 333 ----RGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=103.25 Aligned_cols=165 Identities=13% Similarity=0.056 Sum_probs=116.9
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++..++..++..++.+......+ |..++..-+....+.+..+..+...++.++.++++|| +|||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAI-YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhee-eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 4555566666666666665555544 4444444456666777777778888999999999999 6999999988877665
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+...+....+ ..+.+.+++.-++.+++.+...+...++++|..|.
T Consensus 309 ------------~~~~~~~~~~~~---------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~ 355 (473)
T PRK10429 309 ------------SCGVLLLMGLAA---------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDY 355 (473)
T ss_pred ------------HHHHHHHHhccC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 443322110000 01455666677788999999999999999999886
Q ss_pred CC-cccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 177 TT-DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 177 ~~-~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
++ +.+++..+..++...+...+|..+++.+.|++.+..|+
T Consensus 356 ~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 356 GEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 53 33556667788999999999999999999888765554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=95.32 Aligned_cols=158 Identities=9% Similarity=-0.082 Sum_probs=115.0
Q ss_pred HHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccc
Q 007862 30 RLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKG 109 (587)
Q Consensus 30 ~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g 109 (587)
..........++.|+++.+|.+..+.|.+.....++..++.++.+++.|| .++++++..+..+ .+ .
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~------------~ 283 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GL------------V 283 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HH------------H
Confidence 34444555566778888999999999999999999999999999999999 5999988887543 33 2
Q ss_pred eEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhh
Q 007862 110 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (587)
.+...+.. +.+......++.|++.+...+...+.+.+..|+ + ..+++.+
T Consensus 284 ~~~~~~~~--------------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~----~~~g~~~ 332 (393)
T PRK11195 284 VLLMALQH--------------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-L----VGAGHSI 332 (393)
T ss_pred HHHHHHHh--------------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-c----ccchhHH
Confidence 22222221 445556677788999998888888877765332 1 2379999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 190 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 190 ~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
+..++..+++..++..+.+.+ +..|-+..+.+..+..++.+.+
T Consensus 333 a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 333 AVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998866 4566666666555444444443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-05 Score=84.31 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=93.3
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCCcceee
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAH---LHPMSQVSV 458 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~---~~~~~~~s~ 458 (587)
-.+..+..++..++....+....++.+|..+. .+...+..+.++..+..++.........+..+ .......+.
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f----g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~ 353 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF----GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSY 353 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc----ccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccch
Confidence 34445555665555555555545556555433 34444555555544444443322111111101 011122344
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcc
Q 007862 459 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 538 (587)
Q Consensus 459 ~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~ 538 (587)
....+..+++|++.+.....-+.+.....|++ |..+-+++-+.+.+++.++....+....
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-~~~~fsi~kfyq~~~s~v~~f~~~~~~l------------------- 413 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLYPDD-RAQAFSLFKFYQSVASCVAFFFSPYLLL------------------- 413 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhhhhhhhHH-------------------
Confidence 45556678999999999999999999999655 8899999999999999888776665431
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 539 LDYFYFLIAGLGGLNIVYFLYCARRYRY 566 (587)
Q Consensus 539 ~~~~f~~~~~~~~l~~v~~~~~~~~~~~ 566 (587)
........+.+.+...+++...++++.
T Consensus 414 -~~~~l~~~i~~~i~~~~~~~~~~~~~~ 440 (461)
T KOG3098|consen 414 -YIYTLGLPIFCVIATTIFFIVAERTQA 440 (461)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334555555555566666655543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=91.70 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=111.1
Q ss_pred HHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCC
Q 007862 43 YLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQL 122 (587)
Q Consensus 43 yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 122 (587)
.+.+++|++..+.+.+..+......+..++.|.++|| +||||.-+..++++.+ +.++--.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~------------scl~k~~------- 118 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSL------------SCLTKHS------- 118 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHH------------HHHHHhc-------
Confidence 3457899999999999999999999999999999999 5999999999999998 5542111
Q ss_pred CCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH-HHHHHHHH
Q 007862 123 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVIL 201 (587)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~ 201 (587)
.++..++++|++.|+++.....+--+.......++. -+++..+.-|+... ....+.+.
T Consensus 119 --------------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g-~~~~~L~~tF~~~tf~~n~~vAI 177 (354)
T PF05631_consen 119 --------------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRG-FPQEWLSDTFSLATFFGNGVVAI 177 (354)
T ss_pred --------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHhHHHHH
Confidence 267899999999999999998877776554432211 01122344444333 22334455
Q ss_pred HHhhhhhhcccccch--hhHHHHHHHHHHHHHHHHHhccc
Q 007862 202 ITQTVLVYIQDSVSW--VIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 202 i~~~~~~~i~~~~~w--~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+...++-++.+..+. ..+|..+.++.+++.++....++
T Consensus 178 ~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 178 GAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 555666666665554 78898888877777666554444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-07 Score=103.34 Aligned_cols=143 Identities=17% Similarity=0.012 Sum_probs=100.6
Q ss_pred HhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCC
Q 007862 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPP 125 (587)
Q Consensus 46 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (587)
+.++.+.. +...+..+....+.+++++++|| +|||+++.++.++..+ +.+++.+...
T Consensus 351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~------------~~l~~~~~~~------- 407 (505)
T TIGR00898 351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGV------------ALLLLLFVPV------- 407 (505)
T ss_pred cccCCChH---HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH------------HHHHHHHcCC-------
Confidence 34555533 33334456667788999999999 6999999999888777 6554443321
Q ss_pred CCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhh
Q 007862 126 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 205 (587)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 205 (587)
......+...++.+++.++..+....+.+|.+|++. |++++++......+|+.++|.
T Consensus 408 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~ 464 (505)
T TIGR00898 408 -----------------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPF 464 (505)
T ss_pred -----------------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhH
Confidence 012334444556667777777888899999999855 999999999999999999999
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 206 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 206 ~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+.+ +. ..++...|.+.++..+++.++.++
T Consensus 465 i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 465 LVY-LG-EKWLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HHH-HH-HHHHhhHHHHHHHHHHHHHHHHHc
Confidence 988 43 456667777766665555554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=92.79 Aligned_cols=146 Identities=10% Similarity=0.065 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
..+....+...+.+......+.++.+++|.+..+.+.+..+..++..++.+++|+++|| +|||+++.++.++..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~---- 272 (377)
T PRK11102 198 GYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFI---- 272 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH----
Confidence 33344444445556666666778888899999999999999999999999999999999 6999999988876444
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
..+........+ .+.+....+..+.+.+.+...+.....+.|..|+
T Consensus 273 --------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 318 (377)
T PRK11102 273 --------MGIWLVVSALLD----------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH---- 318 (377)
T ss_pred --------HHHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc----
Confidence 211111111000 0233344444445555555566556666666552
Q ss_pred cccchhhhhhHHHHH-HHHHHHHHhhhhh
Q 007862 181 GVKGINSFFNWYYTT-FTVVILITQTVLV 208 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~-~~~g~~i~~~~~~ 208 (587)
.+++..+.+... ..+|..+++.+++
T Consensus 319 ---~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 319 ---MAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 278888776544 3567777776654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=95.73 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
.......+.|+.+++|++..+.+.+.....+...++.++.|++.|| +|||+++.++.++..+
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 281 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLA 281 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 3344455677888999999999999999999999999999999999 5999999999888777
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=93.77 Aligned_cols=166 Identities=12% Similarity=-0.063 Sum_probs=109.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccch---hhhhH-HHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF---KTITF-ASI 92 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~---~~~~~-~~~ 92 (587)
|.+|.+....++....+|++..++|.|++ +.|++.. .+....+......+ ..++++|| ..|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLI---GVAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHH---HHHHhhHH-hhhhhhHHHHHHHHHH
Confidence 44577777888888999999999999995 5788864 55555554444444 45788888 4654 33222 232
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.....+.. +....+....+.+++.....+...++.+|
T Consensus 266 ~~a~------------~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (368)
T TIGR00903 266 LIAA------------FFLALAFEL--------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGK 307 (368)
T ss_pred HHHH------------HHHHHHHcc--------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2222 222222211 12223444455667777777778889999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
.+|++. |+++.++.+...++|+..+|.+.+.+.. +-+..|.+.++..+++.+..
T Consensus 308 ~~p~~~------rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 308 FCDKEL------HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hcchhh------cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999865 9999999999999999999999887773 55666666555555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=94.82 Aligned_cols=176 Identities=15% Similarity=0.074 Sum_probs=124.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccc--------hhhh-
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR--------FKTI- 87 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr--------~~~~- 87 (587)
+.+|.+....+++..+++.+..++|.|+.+.+|++..+.|+..++-.+.+.+..+++|+++||. -+ ||.+
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 4458888999999999999999999999999999999999999999999999999999999995 43 2222
Q ss_pred hHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccc
Q 007862 88 TFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 167 (587)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 167 (587)
.++...-.+ .++.+++...-+ .......+.++..+.|+..++..
T Consensus 337 ~i~~~~~ai------------~l~~l~~~~~~~--------------------~~~a~~~l~~~~~~~g~~~~Gf~---- 380 (466)
T KOG2532|consen 337 TIAFGGPAV------------FLLVLAFTSDEH--------------------RLLAVILLTIAIGLSGFNISGFY---- 380 (466)
T ss_pred hHHHHHHHH------------HHHeeeecCCCc--------------------chHHHHHHHHHHHHcccchhhhH----
Confidence 223333333 445555543100 00122223333333333333332
Q ss_pred ccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc---cchhhHHHHHHHHHHHHHHHHHh
Q 007862 168 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS---VSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 168 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~---~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.-..|..|. .-+..+++.....++.+.++|.+.+.+..+ -.|+++|++.+++.++..+.+.+
T Consensus 381 ~~~~~~apq-------~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 381 KNHQDIAPQ-------HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred hhhhhccch-------HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 223333443 258888999999999999999999999843 47999999999888877766544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.8e-07 Score=96.75 Aligned_cols=160 Identities=12% Similarity=0.050 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
.+.++...++...+.. +...+..|..++.--+....+.+.....+...++.+++++++|| +|||+.+.++.++.++
T Consensus 231 ~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~-- 306 (444)
T PRK09669 231 WRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVI-- 306 (444)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH--
Confidence 3444444444434443 33334445444332233344455555667777888999999999 5999999988876554
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+.+...+.. ..+...+++..++.|++.+...+...++++|..|.++
T Consensus 307 ----------~~~~~~~~~------------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e 352 (444)
T PRK09669 307 ----------LSALIFFIP------------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEE 352 (444)
T ss_pred ----------HHHHHHHhC------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 222111111 0155667777889999999999999999999998644
Q ss_pred c-ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 179 D-EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 179 ~-~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
. .+++..+..++.+.+..++|..+|+.++|++.+..|+
T Consensus 353 ~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 353 KRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 2445567788898899999999999999988766655
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=93.59 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
++..++..++...+.-....+...|+++.-|.+....+.+.++..+.-...-.+.+++..| +|-|++++++.+.+++
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~v-- 285 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAV-- 285 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH--
Confidence 4444555666666666667788888765555777777877777777888888999999999 5999999999999888
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
=..+.+.... | ........+.+-.+.|+..|...++...++.+.+|++.
T Consensus 286 ----------R~~l~a~~~~-~--------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~ 334 (400)
T PF03825_consen 286 ----------RWLLYAYFSD-P--------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL 334 (400)
T ss_pred ----------HHHHHHHhcC-C--------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc
Confidence 4444444321 0 00012233444567999999999999999999999866
Q ss_pred cccccchhhhhhHHHHH-HHHHHHHHhhhhhhcccccchh------hHHHHHHHHHHHHHHHHHhc
Q 007862 179 DEGVKGINSFFNWYYTT-FTVVILITQTVLVYIQDSVSWV------IGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~-~~~g~~i~~~~~~~i~~~~~w~------~~f~i~~~~~~~~~~~~~~~ 237 (587)
|+++.+++... ..+|..+|..++|++.|.+|-+ ..+.+++++.++..+++++.
T Consensus 335 ------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 335 ------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred ------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999865 5899999999999999886644 45566666655555555544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.8e-07 Score=98.85 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=141.9
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccc--hhhhhHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR--FKTITFASIAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr--~~~~~~~~~~~ 94 (587)
+.++.......+..++++.-..+++.|.. ..|+++.+++.++++..+...++.++.|+++|+. .. +.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 34555556666777888888888888866 9999999999999999999999999999999994 73 44444555555
Q ss_pred HHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
.+ +...+.+.. ++..+...-++.|+..|.........+.|..
T Consensus 376 gl------------~~~~~p~~~--------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~ 417 (509)
T KOG2504|consen 376 GL------------ARLFLPFAT--------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLV 417 (509)
T ss_pred HH------------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55 443334433 6677888889999999999998888999999
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhcc
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGK 238 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~ 238 (587)
+.+. ...++++......++..+||.+.|++.|..+ |...|....+..+++...+++..
T Consensus 418 g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 418 GLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred Chhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 8755 8999999999999999999999999999877 99999988887777776655544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-06 Score=91.10 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=103.6
Q ss_pred HHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhccccccccc
Q 007862 29 ERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGK 108 (587)
Q Consensus 29 ~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (587)
....++.....++.|++ ++|++..+.++.......+..++..+++++.|| +|||+++....+...+
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~------------ 280 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAV------------ 280 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH------------
Confidence 33445555666777764 689999999998888888888999999999999 5999977665554444
Q ss_pred ceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhh
Q 007862 109 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 188 (587)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (587)
+.+.+.+..... ..+....+....+.+++.+...|.......|..|+ + ++++
T Consensus 281 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~ 332 (401)
T PRK11043 281 SVIAIWLASLLS---------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKA 332 (401)
T ss_pred HHHHHHHHHHhc---------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHH
Confidence 322211111000 00334455566778889999999888877777653 2 8999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcccccchhh
Q 007862 189 FNWYYTTFTVVILITQTVLVYIQDSVSWVI 218 (587)
Q Consensus 189 ~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~ 218 (587)
.+++......++.+++.+.+.+.+......
T Consensus 333 ~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 333 AALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 999998888888888888888877544343
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=70.65 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=92.2
Q ss_pred cchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHH
Q 007862 387 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLI 466 (587)
Q Consensus 387 i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 466 (587)
...++..+..++.+++ .||+++ ++.+..+..+..++.+..... .+.+......+
T Consensus 6 ~~~~~~~~~~~~~g~~----~d~~g~-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 59 (141)
T TIGR00880 6 GYALGQLIYSPLSGLL----TDRFGR-------KPVLLVGLFIFVLSTAMFALS---------------SNITVLIIARF 59 (141)
T ss_pred eehhHHHHHHhhHHHH----Hhhcch-------hHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHH
Confidence 3445555666665554 666533 345556666666665554432 24556666778
Q ss_pred HHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHH
Q 007862 467 LMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLI 546 (587)
Q Consensus 467 l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 546 (587)
+.+++.+...+....+..|.+|++.|++++++.+....+|..+++.+.+.+.+.. ++...|...
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~ 123 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFL 123 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888776321 234556666
Q ss_pred HHHHHHHHHHHHHH
Q 007862 547 AGLGGLNIVYFLYC 560 (587)
Q Consensus 547 ~~~~~l~~v~~~~~ 560 (587)
+.+.++..+..++.
T Consensus 124 ~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 124 AILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHhhc
Confidence 66666665555444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-06 Score=86.69 Aligned_cols=165 Identities=12% Similarity=0.124 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
.|.+.+--=+.+..+|.+..++|.+ ..|-|+|..++|++++...+......++.-.+++|.-.+|+.....++++.+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~i-li~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~-- 286 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAI-LIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV-- 286 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHH-HHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH--
Confidence 4555555557889999999999988 4589999999999999999999999999999999866788888888888887
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
|...+.+... +.. +..-+++|+|.|+..|....++.+-.++.+
T Consensus 287 ----------G~~G~~~~P~-------------------------~~~--~lw~~llG~G~G~~F~laL~li~~rs~~a~ 329 (395)
T COG2807 287 ----------GLVGLLLAPG-------------------------QLP--ILWALLLGLGQGGAFPLALTLILLRSSDAA 329 (395)
T ss_pred ----------HHHHHHHhhh-------------------------hHH--HHHHHHHhCccchHHHHHHHHHHhhcCChH
Confidence 7776665442 222 222488999999999999999999887633
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc-chhhHHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMI 228 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~-~w~~~f~i~~~~~~ 228 (587)
.-++..++.+-...+=+..||.+.|++.|.. +|+..+..-....+
T Consensus 330 -----~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 330 -----IAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred -----HHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 2455666666666677788999999999874 58876655444333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=90.05 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLA 98 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~ 98 (587)
.+......++.....+++..+++.|+++++|+++.+++.+..+..+...++.+++|+++|| +|||+.+..+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~-- 303 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAM-- 303 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHH--
Confidence 3444444445555667778889999999999999999999999999999999999999999 5999988887776655
Q ss_pred hcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCC
Q 007862 99 EHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT 178 (587)
Q Consensus 99 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (587)
+..++.+... +..+...++....+.+++.|...+...+++.|.+|. +
T Consensus 304 ----------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 350 (366)
T TIGR00886 304 ----------GAFLVVLGLV----------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A 350 (366)
T ss_pred ----------HHHHHHhcCC----------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h
Confidence 4443333210 000334445555566666677777777888888773 2
Q ss_pred cccccchhhhhhHHHHHHHHH
Q 007862 179 DEGVKGINSFFNWYYTTFTVV 199 (587)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~~g 199 (587)
+++..++.....++|
T Consensus 351 ------~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 351 ------TGAVSGLVGAIGNLG 365 (366)
T ss_pred ------cccHHHHHHHhccCC
Confidence 899999888777765
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=94.39 Aligned_cols=185 Identities=8% Similarity=0.029 Sum_probs=129.1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhh----HHHHHHHHHHHHHHHhhhhHH----Hhhccccchhhh--
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS----AANILNIWGGVTNFAPLLGAF----ISDTYIGRFKTI-- 87 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~----~~~i~~~~~~~~~~~~~~~G~----laD~~~Gr~~~~-- 87 (587)
.+..++....+....+......++.|..+..+.+... .+++.++..+...+.+++-.+ +.||..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3455555556666666667777888877765544322 667888888888877777554 444311223333
Q ss_pred hHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccc
Q 007862 88 TFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 167 (587)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 167 (587)
.++.++..+ +.+..++..... +.....+.+.++...++.++|+....|+..
T Consensus 353 ~~G~~l~~~------------~~~~~~~~~~~~-----------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~ 403 (475)
T TIGR00924 353 TLGMLFCGA------------SFLTFAASIWFA-----------------DAGGLTSPWFMVLIYLFQTLGELMISPLGL 403 (475)
T ss_pred HHHHHHHHH------------HHHHHHHHHhhc-----------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667777766 655544321100 001124788899999999999999999999
Q ss_pred ccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 168 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 168 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
+++++..|++. |++.++.++....+|..+++.+.....+..+|...|...++.+++..++++..
T Consensus 404 ~~~~~~aP~~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 404 SWWTKIAPQRL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999855 99999999999999999999998877777788888877666655555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=90.61 Aligned_cols=162 Identities=14% Similarity=-0.007 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHh-hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKE-YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+......++.-.+..+...+++.|+.+. .+.+...++.....+..+..++.+++|+++|| +++||++.++.++.++
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~- 311 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMA- 311 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH-
Confidence 33334444454444456777888888643 25555555666777778889999999999999 6999999888887777
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 177 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (587)
..++..+.. +. .......+.++..+.+.|...+...+..+++
T Consensus 312 -----------~~ll~~~~~--------------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~ 353 (410)
T TIGR00885 312 -----------LCLGSIFAG--------------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQD 353 (410)
T ss_pred -----------HHHHHHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 544444332 11 1356667788888999999999999999864
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHhhhhhhccccc------chhhHHHHHHHHHH
Q 007862 178 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV------SWVIGFGIPTVLMI 228 (587)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~------~w~~~f~i~~~~~~ 228 (587)
. ..+.+...+. -+|+++.|.+.|++.|.. +.+..|.++.+...
T Consensus 354 ~-------~~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 354 T-------KYGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred h-------hhhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 3 2223333333 399999999999999943 57888988766544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.4e-06 Score=89.36 Aligned_cols=185 Identities=11% Similarity=0.057 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.+...+.+.+...+.-........+.+-++-|++..++.+..........+..+++.++.|| .|||+.++++..++.+
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~- 347 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAV- 347 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH-
Confidence 34555666667666666666667777888899999999999999999999999999999999 5999999999988877
Q ss_pred hhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHH-hccccccccccccccccCCC
Q 007862 98 AEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLS-IGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+++.....+.. .......+. .+.+.++-. .-.=+..|...-+.+|.+|+
T Consensus 348 -----------~~~~~~~~~~l~~----------------~~~~~~~y~-~i~~~~~~~~~f~~G~gpi~~fi~aELf~~ 399 (485)
T KOG0569|consen 348 -----------ALLLMSIALFLSN----------------SFGSWLSYL-CIAAIFLFIISFAIGPGPIPWFIGAELFPQ 399 (485)
T ss_pred -----------HHHHHHHHHHHHH----------------HhhhHHHHH-HHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence 5554443321110 000011111 122222222 22334478889999999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
.. |..++++.+....+..++....-..+.+..|= ..|.+..+...+..+..+...|
T Consensus 400 ~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 400 SA------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 66 99999999988888888887887778777763 4455444444444444444333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=85.68 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
.++..++...++.-..+.++.|.+-.+|.++....+.+........++.++...+.+| +|+||++.++.++.++
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i----- 314 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAV----- 314 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHH-----
Confidence 3344445544444344444555555667777777778888888888889999999999 6999999999999999
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc-
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE- 180 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~- 180 (587)
+.+++.+.. + .+..++++..++.++|.+...+...++++|..|-.|-+
T Consensus 315 -------~~~~~~f~~--~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T 363 (467)
T COG2211 315 -------GYLLLYFTP--A----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT 363 (467)
T ss_pred -------HHHHHHhhc--C----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence 887777654 1 26788899999999999999999999999998865532
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 213 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~ 213 (587)
+.|+-|..++.+..+.-+|.+++..+.|++...
T Consensus 364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777788888887777766443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=84.15 Aligned_cols=141 Identities=9% Similarity=-0.003 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeee
Q 007862 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLT 116 (587)
Q Consensus 37 ~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 116 (587)
....+.|+.+.+|.+..+.+++......+..++.++.+++.|| .||+........+...+ ........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 294 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQSVICCLLAGL-----------LMWIPGWF 294 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHh
Confidence 3445667777799999999999888888888899999999999 48444333222221110 11111110
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHH
Q 007862 117 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 196 (587)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (587)
. ..+.+.+..+.++.++|.+...|...++..|.+|+ .+++..+......
T Consensus 295 ~------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~ 343 (394)
T PRK11652 295 G------------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQ 343 (394)
T ss_pred c------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHH
Confidence 0 01345567778889999999999999999998873 2788899999899
Q ss_pred HHHHHHHhhhhhhcccccchhhHH
Q 007862 197 TVVILITQTVLVYIQDSVSWVIGF 220 (587)
Q Consensus 197 ~~g~~i~~~~~~~i~~~~~w~~~f 220 (587)
++|..+++.+.+++.+...+....
T Consensus 344 ~lg~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 344 NIGSGLAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred HHHHHHHHHHHHHccCCchHHHHH
Confidence 999999999999887765444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=87.11 Aligned_cols=158 Identities=9% Similarity=-0.015 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhc
Q 007862 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEH 100 (587)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~ 100 (587)
.++...++..++..........|.+-.+| ++...+.+..++.+...++.+++++++|| +|+|+++..+.++..+
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~---- 305 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAV---- 305 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH----
Confidence 33334444444444333333333333334 34455667778888888999999999999 5999987755544333
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCc-
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD- 179 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~- 179 (587)
..++..+... .+...++...++.|++.+...+...++++|..+.+|-
T Consensus 306 --------~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~ 353 (460)
T PRK11462 306 --------ISLAMFFVPM------------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWC 353 (460)
T ss_pred --------HHHHHHHhch------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHh
Confidence 2211111110 1222334455667888878777778889998875432
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccch
Q 007862 180 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 216 (587)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w 216 (587)
.++++-+..++...+...+|..+++.++|++.+..|+
T Consensus 354 tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 354 NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2333345556777778899999998888776544333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=78.28 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=110.4
Q ss_pred HHHHHHHhhCCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeec
Q 007862 40 FMVYLLKEYHMNQ--TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTA 117 (587)
Q Consensus 40 ~~~yl~~~~~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 117 (587)
....+..+++.+. ...+++...+.....++.++.|.++||+ |||+.+..+.....+ +.+...+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~------------~~~~~~~~~ 90 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLL------------GTLLLALAP 90 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHH------------HHHHHHhCc
Confidence 3334455565555 5789999999999999999999999995 999888888876444 433333322
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHH-HH
Q 007862 118 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT-TF 196 (587)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~ 196 (587)
. .+...++..|..+|++.|...+...+++.|.+|+ . +.|+...+.... ..
T Consensus 91 ~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 141 (338)
T COG0477 91 N------------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAG 141 (338)
T ss_pred c------------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHH
Confidence 1 1567889999999999999999999999999986 1 238888888887 57
Q ss_pred HHHHHHHhhhhhhcccc--cchhhHHHHHHHHHH
Q 007862 197 TVVILITQTVLVYIQDS--VSWVIGFGIPTVLMI 228 (587)
Q Consensus 197 ~~g~~i~~~~~~~i~~~--~~w~~~f~i~~~~~~ 228 (587)
.+|..+++.+++.+... .+|++.|.+......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 142 ALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888777766543 678886666554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=84.70 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=115.6
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
+++...-.+..++..|+.+.+ .+|++.| ..+.+|++++..+.+++++. .+++.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l----~~~iGy~-------ipm~~Gl~vmf~sTilFafg---------------~sy~~l 162 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNL----IDRIGYK-------IPMVAGLFVMFLSTILFAFG---------------NSYPML 162 (464)
T ss_pred hHHHHHHHHHHHHhcccchhh----HHHhccc-------cHHHHHHHHHHHHHHHHHHc---------------chhHHH
Confidence 444445556666666665555 6666443 66899999999999999876 366688
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchh-hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchh
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHM-KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 540 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~-rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~ 540 (587)
+++-.++++|.++......++..+.+|++. ||.++|....+..+|..+++...+++++.. ++.
T Consensus 163 ~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~----------------Gk~ 226 (464)
T KOG3764|consen 163 FVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA----------------GKS 226 (464)
T ss_pred HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------------CCc
Confidence 889999999999999999999999999665 699999999999999999999999888642 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 541 YFYFLIAGLGGLNIVYFLYCARRYRYK 567 (587)
Q Consensus 541 ~~f~~~~~~~~l~~v~~~~~~~~~~~~ 567 (587)
..|.++++++++....-++..+.++.+
T Consensus 227 aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 227 APFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred CcHHHHHHHHHHHHHHHHheeCccccC
Confidence 789999999999988877776654443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-05 Score=76.52 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=101.9
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeecc
Q 007862 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAW 118 (587)
Q Consensus 39 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 118 (587)
.....+++.+|+|++|...+..+-.++.+++ +++|.+.|+ .|.+.++.++.+...+ |..++.++..
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~------------GY~~~~l~~~ 88 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFV------------GYGLLWLAVS 88 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHH------------HHHHHHHHHh
Confidence 3445789999999999999999999999875 888999999 5999999999999999 8887766442
Q ss_pred CCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHH
Q 007862 119 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 198 (587)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 198 (587)
- ..+..+.+.+.+..++.+.|.+.+..++.....+.||+ + ||++.++.-....+
T Consensus 89 ~-------------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GL 142 (250)
T PF06813_consen 89 G-------------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGL 142 (250)
T ss_pred C-------------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHh
Confidence 0 01112566677777777777777777777777889985 3 89999998877777
Q ss_pred HHHHHhhhhhhcc
Q 007862 199 VILITQTVLVYIQ 211 (587)
Q Consensus 199 g~~i~~~~~~~i~ 211 (587)
++.+-..+...+.
T Consensus 143 Saai~t~i~~~~f 155 (250)
T PF06813_consen 143 SAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHHHHc
Confidence 7765544443333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-06 Score=92.80 Aligned_cols=145 Identities=15% Similarity=0.210 Sum_probs=112.8
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
++++....+..++..|+.+.+ .+|+ +|.+.+.+|..+..++.+..++.. .+|.+
T Consensus 71 Gll~~vf~v~~~i~sPl~gyL----adry-------NR~~v~~vG~~iW~~Av~~~~fs~---------------~Fwq~ 124 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYL----ADRY-------NRKRVIAVGIFIWTLAVFASGFSN---------------HFWQV 124 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHH----Hhhc-------CcceEEeeHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 455555666777777777666 7776 455778999999998888887652 45556
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhH
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 541 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~ 541 (587)
++.-.+.|+||+...|..+.+..|.+|++.|+++.+++++....|+.+|......+...+ ..| .+
T Consensus 125 ~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W----------r~ 189 (493)
T KOG1330|consen 125 LLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW----------RW 189 (493)
T ss_pred HHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce----------EE
Confidence 677799999999999999999999999999999999999999999999877766665443 124 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 542 FYFLIAGLGGLNIVYFLYCARRYRYK 567 (587)
Q Consensus 542 ~f~~~~~~~~l~~v~~~~~~~~~~~~ 567 (587)
.|...++++++..+..+++.++.+++
T Consensus 190 af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred EEEeehHHHHHHHHHHHhhccCcccc
Confidence 67788888888877777776665543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=81.78 Aligned_cols=169 Identities=13% Similarity=0.054 Sum_probs=107.1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhh--C-----------------CChhhHHHHHHHHHHHHHHHhhhhHHHhh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEY--H-----------------MNQTSAANILNIWGGVTNFAPLLGAFISD 78 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--~-----------------~s~~~~~~i~~~~~~~~~~~~~~~G~laD 78 (587)
.-+.+...-+-++++||++.-......+... | .+..+---=+.+.+..-.-+.++.+++.|
T Consensus 327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive 406 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE 406 (528)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence 3344556677788999987765444333211 1 11111111122344555667899999999
Q ss_pred ccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhc
Q 007862 79 TYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIG 158 (587)
Q Consensus 79 ~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 158 (587)
| +||||++-.+++++.+ ..+++. +|++++... .++..+|..++
T Consensus 407 r-lGRKkTMal~l~~f~i------------flfll~---------------------~c~~rn~~t-vllf~arafis-- 449 (528)
T KOG0253|consen 407 R-LGRKKTMALSLILFGI------------FLFLLT---------------------TCKTRNAYT-VLLFTARAFIS-- 449 (528)
T ss_pred H-hcchhHHHHHHHHHHH------------HHHHHH---------------------HhcCcchhH-HHHHHHHHHHh--
Confidence 9 7999999999999888 443322 244444443 34556666664
Q ss_pred cccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 007862 159 TGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~ 233 (587)
+...+++.|..|.+|.+. |+++.|....+..+|+++.|.++ ...+..-.-.+| +.....+++.+.
T Consensus 450 --g~fqvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~-vy~~~~ilagIa 514 (528)
T KOG0253|consen 450 --GAFQVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIF-VYGALFILAGIA 514 (528)
T ss_pred --chheEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHH-HHHHHHHHHHHH
Confidence 445568899999999865 99999999999999999999998 333322223333 344444444444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.3e-05 Score=84.33 Aligned_cols=173 Identities=8% Similarity=0.079 Sum_probs=130.6
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYH---MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~---~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 93 (587)
|.+|............|+..-.-++.|.+..++ .++...|.+.++.-+.-.+.-.+..++-+| +|.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 445555554444444555554557778776553 455667888888888888899999999999 7999999999999
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
+.+ =...++++. +++.+.+.+.+.++-.+.....+.-++++.
T Consensus 299 ~~i------------Ri~~~~~~~--------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 299 MAI------------RIIGSGFAT--------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHH------------HHHHHHT----------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------------HHHHHhhhc--------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888 555666655 778899999999999999999999999999
Q ss_pred CCCCCcccccchhhhhhHH-HHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 174 FDATTDEGVKGINSFFNWY-YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
+|++- ..+.+.+. .....+|..+.+.++|++.|+.|.+..|++-+.+++...++.
T Consensus 341 fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 341 FDKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp S-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 99733 56777764 366789999999999999999999988877665555444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00018 Score=77.92 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=95.8
Q ss_pred cchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHH
Q 007862 387 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLI 466 (587)
Q Consensus 387 i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 466 (587)
+..++..+..++.+. +.||+++| +.+..+.++.+++.+..... .+.++++..-+
T Consensus 59 ~~~~~~~~~~~~~G~----l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a---------------~~~~~l~~~r~ 112 (413)
T PRK15403 59 LYLAGGMALQWLLGP----LSDRIGRR-------PVLITGALIFTLACAATLFT---------------TSMTQFLIARF 112 (413)
T ss_pred HHHHHHHHHHHhhhH----HHHHcCch-------HHHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHHH
Confidence 344555555555444 48887544 56667777777666665532 36667777888
Q ss_pred HHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHH
Q 007862 467 LMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLI 546 (587)
Q Consensus 467 l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 546 (587)
+.|++++...+....+..+.+|++.+++++++.+....++..+++.+.+.+.+.. + ....|+..
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------g----------w~~~f~~~ 176 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------H----------WKVLFAII 176 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C----------HHHHHHHH
Confidence 9999998777777888889999999999999999999999999988887765321 3 35677777
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007862 547 AGLGGLNIVYFLYCARRY 564 (587)
Q Consensus 547 ~~~~~l~~v~~~~~~~~~ 564 (587)
+++.++..+..++..++.
T Consensus 177 ~~~~~i~~~~~~~~lp~~ 194 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPET 194 (413)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 777666665544444443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=60.17 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHH
Q 007862 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (587)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 94 (587)
..-++...+.-.+.++++.|+. +.|+|..+.|.+.++..+...++++++|+++|| .||+|.++....++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 3344555555667788888877 599999999999999999999999999999999 59999888876654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.4e-05 Score=79.51 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=134.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhccccc
Q 007862 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTK 104 (587)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~ 104 (587)
.-++..+++++-=..+=+|=.+.+|++..|..-+...+..+..++-.+.|++..|..+++++-.+++.+..+
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~-------- 287 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL-------- 287 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH--------
Confidence 333444444444444556666789999999999999999999999999999998668999999999988888
Q ss_pred ccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccc
Q 007862 105 YQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 184 (587)
Q Consensus 105 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (587)
+..++.++... .+.+.+..+.++.|+|.|.......+.+-|..++.+
T Consensus 288 ----~f~lii~a~~~-----------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------ 334 (403)
T PF03209_consen 288 ----AFALIILAGPL-----------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------ 334 (403)
T ss_pred ----HHHHHHHHHhc-----------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------
Confidence 77766665531 256889999999999999999999999999998754
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhccc----------ccchhhHHHHHHHHHHHHHHHH
Q 007862 185 INSFFNWYYTTFTVVILITQTVLVYIQD----------SVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 185 r~~~~~~~~~~~~~g~~i~~~~~~~i~~----------~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
-|.+++.......+...++-.++|.+.| ..+|..+|.+-+++.++++.+.
T Consensus 335 aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 335 AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888888888888877653 2457788888888777766553
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.2e-07 Score=99.02 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=111.0
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
.....+....+..+..+....+..+++.+..+.++. -.......+...++.+++.++.|| +|||++++++.++..+
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~- 328 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI- 328 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc-
Confidence 344444455555455544555556666777777776 222233345555677788899999 6999999999988887
Q ss_pred hhcccccccccceEEEe-eeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 98 AEHFVTKYQGKGMLTVT-LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
..+.++ .....+. .+...+...+....+.......+..+....+.+|.||+
T Consensus 329 -----------~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt 380 (451)
T PF00083_consen 329 -----------CSLILGIIFFLGVS-----------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT 380 (451)
T ss_pred -----------cccccccccccccc-----------------cccccccccceeeeeccccccccccccccccccccccc
Confidence 666554 1111000 00001222222222222233335567777889999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
+. |+++.++.+....+++.+++.+..++.+..+-...|.+.+...++..+..
T Consensus 381 ~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 381 KV------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred cc------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 65 99999999999999999999998888877663444555554444444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.1e-05 Score=85.04 Aligned_cols=175 Identities=11% Similarity=0.106 Sum_probs=113.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCCh----hhHHHHHHHHHHHHHHHhhhhHHHhhccccchhh-------hhHHHHHH
Q 007862 26 ETFERLATIGLLANFMVYLLKEYHMNQ----TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT-------ITFASIAA 94 (587)
Q Consensus 26 ~~~~~~~~~~~~~~~~~yl~~~~~~s~----~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~-------~~~~~~~~ 94 (587)
..+....+......++.|.++..+.+. -...++.+...+...+..++.|++.|| +|||+. +.+++++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence 344445555565777777765333221 123455555666677788888999999 599984 77777776
Q ss_pred HHhhhcccccccccceEEEeeecc-CCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 95 ILLAEHFVTKYQGKGMLTVTLTAW-LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
.+ +++..+.... ... .....+.+.++..-+++++|++...|....++.+.
T Consensus 357 ~~------------~~~~~~~~~~~~~~-----------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~ 407 (489)
T PRK10207 357 SL------------GFLTAAAAGMWFAD-----------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAAL 407 (489)
T ss_pred HH------------HHHHHHHHHHhhcC-----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 66 5533211000 000 00012456677888999999999999999999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc----------ccchhhHHHHHHHHHHHHHHHHHh
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD----------SVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~----------~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
.|++. ++.+++.++...++|..++..++.+... ...+.+.|...++..++..+++++
T Consensus 408 aP~~~------~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 408 VPQHL------MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99855 8999999999999999999888765521 012456666555444443333333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0066 Score=65.30 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCC
Q 007862 55 AANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPF 134 (587)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (587)
.+.++.+-.+-..+.-+++-+..+| +.-+.=+.++.++.++ |+++.+++.
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~------------g~l~va~~~----------------- 110 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAA------------GMLLVAFSP----------------- 110 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHH------------HHhheeecc-----------------
Confidence 3446666666666667778888888 5765556677777888 999888865
Q ss_pred CcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-c
Q 007862 135 GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-S 213 (587)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~ 213 (587)
+.++-+++-.+.+++.|.-.....++.. .+++ ...+.+..+...++.+|+..-..+.+ .
T Consensus 111 ---------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----------~~l~~wssGTG~aGl~Ga~~y~~lT~~g 170 (402)
T PF02487_consen 111 ---------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----------SSLSAWSSGTGGAGLVGALYYLGLTTLG 170 (402)
T ss_pred ---------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----------cccccccCCcChhhHHHHHHHHHHHHhC
Confidence 6677789999999999999988888655 4553 13444455556666666655444443 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 007862 214 VSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 214 ~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
.+-|..+.+..++-++.++.++
T Consensus 171 ~s~~~tll~~~~lp~~~~~~~f 192 (402)
T PF02487_consen 171 LSPRTTLLIMLVLPAIFLLSYF 192 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666555444443333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.7e-05 Score=82.88 Aligned_cols=134 Identities=6% Similarity=-0.150 Sum_probs=106.6
Q ss_pred HHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEe-ee-ccCCCC
Q 007862 45 LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVT-LT-AWLPQL 122 (587)
Q Consensus 45 ~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~ 122 (587)
.+.+|.++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++..+ +.+... +. .+-...
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~------------~~~~~~~l~~~~~~~~ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTL------------SSLFDLILVKRWNLAF 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHH------------HHhCceeeeecccccc
Confidence 45789999999999999999999999999999999 6999999999999888 654432 11 110000
Q ss_pred CCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q 007862 123 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 202 (587)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 202 (587)
+. .+...+...-++.+++.+........++.+..|++. +++.++++....++|..+
T Consensus 347 gi------------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v 402 (468)
T TIGR00788 347 GI------------------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSV 402 (468)
T ss_pred CC------------------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHH
Confidence 00 022234555677888888888888999999999866 899999999999999999
Q ss_pred Hhhhhhhcccccc
Q 007862 203 TQTVLVYIQDSVS 215 (587)
Q Consensus 203 ~~~~~~~i~~~~~ 215 (587)
++.+++++.+..|
T Consensus 403 ~~~~gg~l~~~~g 415 (468)
T TIGR00788 403 SGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988766
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.6e-05 Score=82.34 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=111.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHH--hhCCCh------hhHHHHHHHHHHHHHHHhhhh----HHHhhccccchhhhhHHHHH
Q 007862 26 ETFERLATIGLLANFMVYLLK--EYHMNQ------TSAANILNIWGGVTNFAPLLG----AFISDTYIGRFKTITFASIA 93 (587)
Q Consensus 26 ~~~~~~~~~~~~~~~~~yl~~--~~~~s~------~~~~~i~~~~~~~~~~~~~~~----G~laD~~~Gr~~~~~~~~~~ 93 (587)
.++....+|.+...++.++.. ..+.+. ...+++.++..+...+..++. +++.|| ++..+.+.++.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence 334555666666666655443 111211 225666677776666776666 555666 3666888999999
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
..+ |++.+.+....+. ..+..+.+.++...+++++|++...|...+++.+.
T Consensus 360 ~~l------------~f~~l~~~~~~~~-----------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~ 410 (500)
T PRK09584 360 CSG------------AFLVLPLGAKFAN-----------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQL 410 (500)
T ss_pred HHH------------HHHHHHHHHHhcC-----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 888 8777655442110 00123556788999999999999999999999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc----------ccchhhHHHHHHHHHHHH
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD----------SVSWVIGFGIPTVLMIGA 230 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~----------~~~w~~~f~i~~~~~~~~ 230 (587)
.|++. |++.++.++....+|..++..+...... ..++.+.|...++..++.
T Consensus 411 aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 411 VPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred CcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99855 9999999888888888777666643221 123667776655544433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00069 Score=67.95 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCC
Q 007862 42 VYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQ 121 (587)
Q Consensus 42 ~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 121 (587)
.|+.+.+|+...+.|.+..+......+...+.|-++|+ .|||+.-..-++.+++ .+++..
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiL----------------sCiTKh--- 120 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYIL----------------SCITKH--- 120 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHH----------------HHHhhc---
Confidence 46677899999999999888888888999999999999 6999976665555555 233332
Q ss_pred CCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc-ccccCCCCCcccccchhhhhhHHHH------
Q 007862 122 LHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF-GVDQFDATTDEGVKGINSFFNWYYT------ 194 (587)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~------ 194 (587)
+.++-+++++|.+-|+.+.....+--+. ++|.-+ +|+.=.-|...
T Consensus 121 --------------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne--------kr~FeqqWls~TFskA~ 172 (454)
T KOG4332|consen 121 --------------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE--------KRGFEQQWLSVTFSKAV 172 (454)
T ss_pred --------------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--------ccCChHhhhhHHHHHHH
Confidence 1266779999999999998877665543 333222 23333333322
Q ss_pred --HHHHHHHHHhhhhhhccccc--chhhHHHHHHHHHHHHH
Q 007862 195 --TFTVVILITQTVLVYIQDSV--SWVIGFGIPTVLMIGAI 231 (587)
Q Consensus 195 --~~~~g~~i~~~~~~~i~~~~--~w~~~f~i~~~~~~~~~ 231 (587)
...+.+.+....+-++.+.+ |-..+|-..+.+..++.
T Consensus 173 ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 173 FFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred HhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 23344455555555566554 34566665555444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=79.94 Aligned_cols=127 Identities=15% Similarity=0.039 Sum_probs=90.0
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh--hhcc------------
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG--RRAS------------ 447 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~--~~~~------------ 447 (587)
+++.....++..+..+++.++ .+|.+ +++.+++|.++.+++.+++++..-. +++.
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~----~~r~~-------r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYF----GTKLH-------RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHh----hcccC-------cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 455556667777777765555 66653 3466788888888888777654310 0000
Q ss_pred -----cccC----------------CCc-ceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHH
Q 007862 448 -----AHLH----------------PMS-QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 505 (587)
Q Consensus 448 -----~~~~----------------~~~-~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l 505 (587)
+... ... ...+..++++-++.|+|++...+...+++.|.+|++.|+.+.|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0000 000 113445667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 007862 506 ASYLSSLLITIVHG 519 (587)
Q Consensus 506 g~~l~~~l~~~v~~ 519 (587)
|..+++.+.+.+..
T Consensus 220 G~~lG~llgg~l~~ 233 (633)
T TIGR00805 220 GPAFGYLLGSFCLQ 233 (633)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999988887664
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00066 Score=75.30 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=84.4
Q ss_pred hhhhhchhhhhHHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHH
Q 007862 393 GLWLPFYDTVLVPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFC 471 (587)
Q Consensus 393 ~l~~~l~~~l~~~l~~r~-~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~g 471 (587)
.+..++.+++ .||+ ++| +.+..|.++..++.+...... .+...+.....+..+|
T Consensus 59 ~l~~ligG~L----aDRilGrr-------r~iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li~iG 113 (493)
T PRK15462 59 YVTPILGGFL----ADKVLGNR-------MAVMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAIIVCG 113 (493)
T ss_pred HHHHHHHHHH----HHHccCcH-------HHHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHh
Confidence 3344444444 7776 433 556777777777765443211 1112234445566677
Q ss_pred HHHHhhhhHHHHHhhCCch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHH
Q 007862 472 EAFNIIGQIEFFNKQFPDH--MKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGL 549 (587)
Q Consensus 472 e~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~ 549 (587)
.++..+...++..|.+|++ .|+.+.++.....++|+.+++.+.+.+.+.. ++...|...++.
T Consensus 114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaig 177 (493)
T PRK15462 114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVG 177 (493)
T ss_pred cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHH
Confidence 7777788889999999975 7999999999989999999999998875422 234567666655
Q ss_pred HHHHHHHHHHHHhh
Q 007862 550 GGLNIVYFLYCARR 563 (587)
Q Consensus 550 ~~l~~v~~~~~~~~ 563 (587)
.+++.+.+++..+.
T Consensus 178 m~l~li~~~~~~~~ 191 (493)
T PRK15462 178 MIAGLVIFLCGNRH 191 (493)
T ss_pred HHHHHHHHHHhhhh
Confidence 55666555544433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=7.2e-05 Score=81.50 Aligned_cols=162 Identities=11% Similarity=0.062 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
++...+++-+=.++++-..+-.|.....-..+-++.-++.+++..| +|+-+++.+++....+ =.+..
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~------------Rf~~~ 453 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVG------------RFLYY 453 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHH------------HHHHH
Confidence 3444444555567888777777777777777788888999999999 6999999999887766 44433
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
.... |+|+.+..-+++|+-.+.+..++.+|+++..|++. |.++.++..
T Consensus 454 S~L~--------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~ 501 (618)
T KOG3762|consen 454 SYLQ--------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQ 501 (618)
T ss_pred HHhc--------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHH
Confidence 4333 78889999999999999999999999999999866 899999888
Q ss_pred HHH-HHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007862 194 TTF-TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 194 ~~~-~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
... .+|-.+|.+++|.+.+.+|-|.-|.+.++..++.++++....+.
T Consensus 502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 554 88999999999999999999999998888888777776654443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=76.77 Aligned_cols=205 Identities=9% Similarity=-0.042 Sum_probs=137.6
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh-hCCChh------h----HHHHHHHHHHHHHHHhhhhHHHhhccc
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-YHMNQT------S----AANILNIWGGVTNFAPLLGAFISDTYI 81 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~~~s~~------~----~~~i~~~~~~~~~~~~~~~G~laD~~~ 81 (587)
+.-||.++.+..++++..++++.+..+.+.|+.++ ||-++. + ..+....+++...+.+++--++.++ +
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~ 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-W 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 45678889999999999999999999999999864 443221 1 2345555566666777778888999 6
Q ss_pred cc-hhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccc
Q 007862 82 GR-FKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTG 160 (587)
Q Consensus 82 Gr-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g 160 (587)
|+ |++..++.++..+ +++...+....+.=.. +-+++. .. -.|+.......++...+.|+..+
T Consensus 333 g~~k~~~~~s~~~~~~------------~l~~~~~i~~~~~~~~-~~~~~~--~~--~~~~~~~~~~~l~~~~~~Gi~~A 395 (477)
T TIGR01301 333 GAGKRLWGIVNIILAI------------CLAATVLVTYVAKNSR-YYDGDG--ES--LPPPTGIKASALIVFAILGIPLA 395 (477)
T ss_pred ccchhHHHHHHHHHHH------------HHHHHHHHHhhhhccc-cccccc--cc--cCcchhhHHHHHHHHHHhhHHHH
Confidence 95 6666888776666 5554443221110000 000000 00 01111224667777788999999
Q ss_pred cccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc--hhhHHHHHHHHHHHHHHHHHhcc
Q 007862 161 GIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFGIPTVLMIGAIILFLVGK 238 (587)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~--w~~~f~i~~~~~~~~~~~~~~~~ 238 (587)
.+...-++++++..+++. ++.|..++++..+..+...+..+..|.+.+..| -...+.+.++.++++.++.+...
T Consensus 396 ~~~siPfal~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 396 ITYSIPFALASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHHHhHHHHHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988533 457899999998888888888777777554444 45788888888888877766544
Q ss_pred c
Q 007862 239 K 239 (587)
Q Consensus 239 ~ 239 (587)
|
T Consensus 472 ~ 472 (477)
T TIGR01301 472 P 472 (477)
T ss_pred C
Confidence 4
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0027 Score=69.55 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=83.0
Q ss_pred ccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHH
Q 007862 386 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQL 465 (587)
Q Consensus 386 ~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 465 (587)
.....+-.+.....+.+ .||++ .++.+..+++..++..++.++. .++..+.+.-
T Consensus 69 s~F~ysYal~qIp~GlL----aDrlG-------~K~vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R 122 (511)
T TIGR00806 69 PVLPYSHLAVLVPVFLL----TDYLR-------YKPVLVLQALSFVCVWLLLLLG---------------TSVWHMQLME 122 (511)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 33444555555554444 77764 3466777777777777766654 3567788888
Q ss_pred HHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007862 466 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 518 (587)
Q Consensus 466 ~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~ 518 (587)
+++|++|+... ....++++-+|++.|++++|++.....+|..+++.+.+.+.
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999988843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00021 Score=79.17 Aligned_cols=163 Identities=11% Similarity=0.011 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchhhhhHHHHHHH
Q 007862 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTITFASIAAI 95 (587)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~~~~~~ 95 (587)
+|...+..++.....|+...++|.|+++..|+|..+++.+...+.++..++.+++|+++||. ..+|..+.....++.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45566778888888899999999999997789999999999999999999999999999992 267777766666655
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+. |...+.... .......+.+....+.+...++...-..+...
T Consensus 355 ~~-----------g~~~l~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~ 397 (495)
T KOG2533|consen 355 II-----------GAISLLAAA--------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLA 397 (495)
T ss_pred HH-----------HHHHHHhhc--------------------------cchHHhHHHHhcchhhHHHHHHHHhhcccccc
Confidence 51 322222211 12223333333444455555666666666655
Q ss_pred CCCcccccchhhhhhHHHHHH-HHHHHHHhhhhhhcccccchhhHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTF-TVVILITQTVLVYIQDSVSWVIGFGIP 223 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~-~~g~~i~~~~~~~i~~~~~w~~~f~i~ 223 (587)
.++ +|-+..+.+-.+. ..|.+.+++.-+.....++|...|...
T Consensus 398 g~~-----k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 398 GNT-----KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred chH-----HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 433 3555555555444 555555666666666667888888443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00064 Score=72.09 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 34 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
.++-.+++.|+.+..|++..+++...+.+..+..++..++-++-.| +-..|.+.+..+..++ -.+..
T Consensus 253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~il------------l~~~~ 319 (422)
T COG0738 253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAIL------------LLLAV 319 (422)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH------------HHHHH
Confidence 5566788999998899999999999999999999999999999999 6888888887765444 22233
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
.++. + ...+.+..+.|+..+.+.|.+.+...+..|++. +.++.. -
T Consensus 320 ~l~~--------------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~~---l 364 (422)
T COG0738 320 ALIG--------------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSGL---L 364 (422)
T ss_pred HHhc--------------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----ccccee---e
Confidence 3333 1 234556678899999999999999999999543 133322 2
Q ss_pred HHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Q 007862 194 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMI 228 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~ 228 (587)
.+.-+|+++-|.+-|++.|..|-...+.+...++.
T Consensus 365 ~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 365 VMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred eeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35678999999999999999998877764333333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=74.20 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=111.1
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+..+|......+...+..+.-+....+....+-+..|.+... .+...+......++..++.++.|| +|||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence 456666666677777777766655555555666777766543 555555666677777888999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
.+.+ ++++++........+.. .........+....+.......+..|....+.+|
T Consensus 368 ~m~~------------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE 422 (513)
T KOG0254|consen 368 GMSI------------CLVILAVVGVFALYYPN-------------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE 422 (513)
T ss_pred HHHH------------HHHHHHHHHHHhccCCC-------------cccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence 9988 77776654321110000 0011123334444444444455556777778899
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
.+|.+- |+++.++......+...+-......+.+..++...|.+......+..+
T Consensus 423 ifp~~~------r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 423 IFPLRL------RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred cCcHhH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 999855 888887766555444443333333333333334444444433333333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00017 Score=77.24 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcc---ccchhhhhHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTITFASIA 93 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~~~~ 93 (587)
+.+..+..+.+--.+++-.-..+.++|++ ++|.+-...+.+-.+--+...+.+|+.|..+||+ +||||.++.+..+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 66677777777777888777888888854 8999999888888888899999999999999975 7999999888776
Q ss_pred HHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 94 AILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 94 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
.+.+ +.++.+.++++.. ..++....| ...-....++++..+.=+..-..+...-++.+|.
T Consensus 111 ~i~~-----------~l~Lig~aaDig~---~lgd~~~~~------~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl 170 (498)
T KOG0637|consen 111 LIAV-----------SLFLIGYAADIGL---LLGDNERKP------VKPRAIVLFILGFWLLDVANNTLQGPCRALLADL 170 (498)
T ss_pred HHHH-----------HHhhhhhHhhhhH---HhcCCcccc------cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence 5554 7777777765332 222221100 1223556777788888888888888899999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhc
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 210 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i 210 (587)
.-..+ +++| +.+++.....+|..+|...++|.
T Consensus 171 ~~~d~---~~~~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 171 ARGDA---KKTR--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ccChh---hhhc--cchhHHHHHHhcceeeeeccccc
Confidence 87544 1222 88888889999999998888753
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0072 Score=68.46 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=86.8
Q ss_pred HHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007862 405 PALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFN 484 (587)
Q Consensus 405 ~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~ 484 (587)
++.||+ .+++.+.+|.++..++.++.++.... ....+++.+.+..++.++|++...+.......
T Consensus 83 ~L~Dr~-------G~R~vllig~ll~~iG~ll~ala~~~---------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~ 146 (591)
T PTZ00207 83 FIYDYL-------GPRPIFVLSMTVFCLGTLLFALTFQE---------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVL 146 (591)
T ss_pred HHHHHh-------CcHHHHHHHHHHHHHHHHHHHHHhcc---------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346776 45577888888888888877754210 01236666777888999999999898888899
Q ss_pred hhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007862 485 KQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 562 (587)
Q Consensus 485 ~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~ 562 (587)
+.+| +.||+++|+......+|+.+.+.+...+.. . +...+|++++++.++..+..+.+.+
T Consensus 147 ~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------~----------~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 147 SVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------D----------NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----------hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 9998 569999999999999999865544443321 0 1235666777777766665555544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0083 Score=64.63 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHh-hCCChhhHHH-HHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEE
Q 007862 36 LLANFMVYLLKE-YHMNQTSAAN-ILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTV 113 (587)
Q Consensus 36 ~~~~~~~yl~~~-~~~s~~~~~~-i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 113 (587)
.-+++..|+.++ .|++..|... +.-.+.-......++...+.|. +|.|++++++.+..++ ...++
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~------------t~~ll 88 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYII------------TWLLL 88 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH------------HHHHH
Confidence 346788999987 8999998774 4445555556667888899999 6999999999988777 55554
Q ss_pred eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 114 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
-+.. +...+-+.-+.-|++.+. ..+.++++--..|+++ -.++.++..
T Consensus 89 l~~~--------------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~r 135 (412)
T PF01770_consen 89 LFGT--------------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTR 135 (412)
T ss_pred HHHC--------------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHH
Confidence 4444 455566666666776666 4445555555556533 555566655
Q ss_pred HHHHHHHHHHhhhhhhcc--cccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 194 TTFTVVILITQTVLVYIQ--DSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~~i~--~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
...-+|..++..++-.+. +..++...+.+......+++++.++.
T Consensus 136 aa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 136 AATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555555555554443 34567788888887777777665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0085 Score=67.73 Aligned_cols=138 Identities=12% Similarity=0.285 Sum_probs=91.0
Q ss_pred cccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehH
Q 007862 381 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 460 (587)
Q Consensus 381 ~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~ 460 (587)
..++...+.+...+..|+++++ .|.++|| +.++.|.++..++.++.+.. .+...
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA---------------~~~~~ 133 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATA---------------QNMNT 133 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcC---------------CcHHH
Confidence 3455566777778888876666 7777544 67888888888888887643 46667
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchh
Q 007862 461 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 540 (587)
Q Consensus 461 li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~ 540 (587)
++.+..+.++|.+.... ....+.|..|.+.|+.+.++.....-.....++.+...+.. +.+| .
T Consensus 134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W----------R 196 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW----------R 196 (599)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc----------c
Confidence 88888999998766654 45568999999999888776655444444444444433321 2356 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007862 541 YFYFLIAGLGGLNIVYFLYCA 561 (587)
Q Consensus 541 ~~f~~~~~~~~l~~v~~~~~~ 561 (587)
+.|++.+++..++.+..+++.
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 455655666666655444443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.16 Score=55.41 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=47.2
Q ss_pred eeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007862 456 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLIT 515 (587)
Q Consensus 456 ~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~ 515 (587)
.+...++.+.++-=+|.-.......-+..|..|++.||..+|.-+..+++-..+...+.-
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556666667888888888888999999999999999999888888877765543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0016 Score=70.20 Aligned_cols=170 Identities=13% Similarity=0.034 Sum_probs=109.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCChhh--------HHHHHHHHHHHHHH-HhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 25 NETFERLATIGLLANFMVYLLKEYHMNQTS--------AANILNIWGGVTNF-APLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~--------~~~i~~~~~~~~~~-~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.-++..+++|+.-.+...-++ .+|..+.+ .+....+...+..+ +-.+..++.|+ +|||+.-+.+.++++
T Consensus 312 ~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~ 389 (538)
T KOG0252|consen 312 TWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQLMGFFIMT 389 (538)
T ss_pred HHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHHhhHHHHH
Confidence 334455566655444443333 33332221 22222333333333 66677888999 799999999999998
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ -.+.++...+.. ....+.+++.-+.+-++.-+-....-..-+|.||
T Consensus 390 i------------~~~~~~~~y~~~---------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FP 436 (538)
T KOG0252|consen 390 I------------FFFVIAGPYNQL---------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFP 436 (538)
T ss_pred H------------HHHHHcCCcccc---------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhch
Confidence 8 444444433200 0122233333333444555555556666789999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc-----ccchhhHHHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-----SVSWVIGFGIPTVLMIGAIILFL 235 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-----~~~w~~~f~i~~~~~~~~~~~~~ 235 (587)
++- |++.-++.....-.|+.++.....++++ ..+.+..|++....+.+.++..+
T Consensus 437 arv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 437 ARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred HHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence 854 9999999999999999999999999998 78889999998888877766543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=65.76 Aligned_cols=316 Identities=9% Similarity=-0.099 Sum_probs=187.2
Q ss_pred hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCC
Q 007862 48 YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKC 127 (587)
Q Consensus 48 ~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 127 (587)
.+..........+++.....+..++....+|-.-|+-..+..-++..++ +.+...+.+. +.
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii------------~~lG~~llai-~a------ 75 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIV------------YVVGHALLSF-GA------ 75 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHh-cc------
Confidence 4455566777889999999999999999999987777777777777777 6666555442 10
Q ss_pred CCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhh
Q 007862 128 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 207 (587)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 207 (587)
.+...+.....+..+.+.++.++..++-+.+.+++++.. ..+.+.+..++|++..+.+.+. .+++
T Consensus 76 -----------~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNiG-Slis 140 (654)
T TIGR00926 76 -----------IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINAG-SLIS 140 (654)
T ss_pred -----------CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHHH-HHHH
Confidence 112222344566888889999999999999999999853 3444667999999998887775 5666
Q ss_pred hhcccccc-hhh-------HHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCcc
Q 007862 208 VYIQDSVS-WVI-------GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGI 279 (587)
Q Consensus 208 ~~i~~~~~-w~~-------~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 279 (587)
..+..... +.. -++..++.+++.++.+++....++.-++.+.....+.++.....+..
T Consensus 141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~-------------- 206 (654)
T TIGR00926 141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTAL-------------- 206 (654)
T ss_pred HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHH--------------
Confidence 66665433 322 23356666666666666655544333222211111111111000000
Q ss_pred ccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce--eeehhhhhhhhhHHHHHHHHHHhhhcc
Q 007862 280 FYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ--QVEEVKCLIKIIPIWAAGIISLTSISQ 357 (587)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (587)
+..... ........|.+.... ..++.+...+++.++...+.+++.+.+
T Consensus 207 ----------------------------~~~~~~--~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~ 256 (654)
T TIGR00926 207 ----------------------------RKRFST--RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWAL 256 (654)
T ss_pred ----------------------------HHhhcc--CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000001223222222 234456777777777777777776665
Q ss_pred ccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 007862 358 QGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVA 437 (587)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~ 437 (587)
+......+....+.+.+ .+...+.....++.+-.++..++...+..++..++. +...+...+.-+.+.+.++.+.+
T Consensus 257 ~~Q~~s~~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~ 332 (654)
T TIGR00926 257 FDQQGSRWTLQATRMDG-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSF 332 (654)
T ss_pred HhcchhHHHHHHHHhcC-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHH
Confidence 44444444444444432 222223344566777777777777776667776652 11122456777778888888888
Q ss_pred HHHHHhhh
Q 007862 438 GLVERGRR 445 (587)
Q Consensus 438 ~~~~~~~~ 445 (587)
...+....
T Consensus 333 ~va~~ve~ 340 (654)
T TIGR00926 333 FVAALVQL 340 (654)
T ss_pred HHHHHHHH
Confidence 88777774
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0046 Score=65.27 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHH-HHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhcccc-chhhhhHHHHHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYL-LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-RFKTITFASIAAI 95 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-r~~~~~~~~~~~~ 95 (587)
.++.++....+.....|....+...++ .+.+|+++.+.|-++...++.+.+.+..-....||..| -+-.+..++.++.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 456666666666666677777777776 45789999999999999999999999998999998633 3444555555544
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
- ..++++.+. ....++.+..+-.+.++...+|...++....|
T Consensus 341 P------------~~llls~~~--------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~ 382 (451)
T KOG2615|consen 341 P------------AFLLLSLAR--------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGP 382 (451)
T ss_pred H------------HHHHHhccc--------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 4 444555554 44678999999999999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhccc
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 212 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~ 212 (587)
+++ ||...++......++=++||.++|++..
T Consensus 383 ~~q------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 383 QSQ------RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred ccc------chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 877 9999999999999999999999998865
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.22 Score=52.84 Aligned_cols=112 Identities=8% Similarity=0.019 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC-C---CCCccCCCC
Q 007862 460 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG-H---PDWLTNDID 535 (587)
Q Consensus 460 ~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~-~---~~w~~~~~~ 535 (587)
.++.++.+.++.....+...+++-+++++++.-|++|.+.+....+|+-.-..+...+.+...-+. . .+..+....
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~t~~~~c~~~~ 450 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLATNKVTCITKA 450 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeeccccccceeeecch
Confidence 345578888888888899999999999999999999999999999987766655555554321110 0 000000000
Q ss_pred --------Cc----chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 007862 536 --------AG----RLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ 571 (587)
Q Consensus 536 --------~~----~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~ 571 (587)
.+ -.+.+|..-++..+++.+.+.++.++.++.+.+.
T Consensus 451 ~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~Lq~~p 498 (510)
T KOG3574|consen 451 FPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYLQKLP 498 (510)
T ss_pred HHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHHHhCC
Confidence 00 1133455555566667666666777777665543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.014 Score=54.71 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCC
Q 007862 51 NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVA 130 (587)
Q Consensus 51 s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 130 (587)
++...-.-+++......+.+++++.+.++ +|.|++++++.+.+.+ -. .+...|
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~------------y~----~~~~~~---------- 87 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAI------------YI----ASFFYP---------- 87 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHH------------HH----HHHHhh----------
Confidence 33344455666777778888889999999 7999999999998887 11 111111
Q ss_pred CCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhh
Q 007862 131 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 208 (587)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 208 (587)
+...++.+-.+.|+|.+....+.-.++.+..++++ |++..+++....+.+..+|.++.-
T Consensus 88 -------------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 88 -------------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred -------------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999988776644 777777777777777776655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.055 Score=59.55 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=101.7
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
+++.....++.++..|..+.+ ..|.+ +.++-++.|.++..++=+++...+.. .....+++
T Consensus 74 G~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~----------~~~~~y~m 133 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV----------PNGVKYLM 133 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc----------ccchHHHH
Confidence 455556778888887776665 33322 23455888999988888888655542 12255667
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhH
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 541 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~ 541 (587)
.++.++.|+|.+. ....=.|+.+.+-.+.|.++++.....+.+|..+|+.+.+.+...... ...|.++ ..-+.|+.
T Consensus 134 L~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~~~-~~~n~YTa 209 (488)
T KOG2325|consen 134 LVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMILPG-LIFNMYTA 209 (488)
T ss_pred HHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEcCc-ceEEecch
Confidence 7788999988543 344555677766666677888887777788888888777666543211 1111221 22234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 007862 542 FYFLIAGLGGLNIVYFLYCARRYR 565 (587)
Q Consensus 542 ~f~~~~~~~~l~~v~~~~~~~~~~ 565 (587)
.-|+.+.+.++.++...++.+|..
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeecc
Confidence 667788888888877777666543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=65.28 Aligned_cols=126 Identities=11% Similarity=0.182 Sum_probs=91.9
Q ss_pred ccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHH
Q 007862 386 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQL 465 (587)
Q Consensus 386 ~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 465 (587)
.+..++.+++..+ ..++.|+++|| ..+..++++..++-+..++. .+++.+.+.-
T Consensus 125 s~~~~G~~vG~~i----~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a---------------~~~~~~~~~R 178 (521)
T KOG0255|consen 125 SLFFLGVLVGSLI----FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA---------------PNYWMFLIFR 178 (521)
T ss_pred HHHHHHHHHHHhh----heehHhhcccH-------HHHHHHHHHHHHHHHHHHHh---------------CcHHHHHHHH
Confidence 3444555454444 34447776544 56666666666666555543 5788888888
Q ss_pred HHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHH
Q 007862 466 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFL 545 (587)
Q Consensus 466 ~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~ 545 (587)
++.|++........+.+..|..+++.|+.++.+ ....+.++.+++.....+.. +| ...++.
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~ 239 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWI 239 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHH
Confidence 999999999999999999999999999999999 88888888888887777653 45 455666
Q ss_pred HHHHHHHHHHH
Q 007862 546 IAGLGGLNIVY 556 (587)
Q Consensus 546 ~~~~~~l~~v~ 556 (587)
.....++.+++
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.05 Score=58.03 Aligned_cols=125 Identities=16% Similarity=0.084 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCch---hhHHHHH
Q 007862 421 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH---MKSIANS 497 (587)
Q Consensus 421 ~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~---~rg~~~g 497 (587)
+.+..|.+++.++.+++...... .......+...+.+++.+.++|.++.=|+...+..|+++++ .|..+-.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 45677888888888775544210 00012234567888899999999999999999999999977 3555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 498 LLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 567 (587)
Q Consensus 498 l~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~ 567 (587)
.+....++|+.++..+.+.+.+. .++...|.+.++..+++.+.++...+++++.
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 67788888999888777776531 1456778888888888888777666665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.019 Score=62.82 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCc--hhhHHH
Q 007862 418 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD--HMKSIA 495 (587)
Q Consensus 418 ~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~--~~rg~~ 495 (587)
..++.+..|-+++.++.++++... ..+...+.++++++++|.++.=|+......+++|+ ..|..+
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~-------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISS-------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc-------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 444678888888888888877431 13456788889999999999999999999999994 346667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007862 496 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 568 (587)
Q Consensus 496 ~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~ 568 (587)
.++..+.-++|+.+++.+.+.+.... ++...|.+.++-+.++.+.++++.|+.+...
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 78888888899999999888876422 3567788888888889999988877665543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.052 Score=62.28 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=109.7
Q ss_pred cccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh--hh--c------c--c
Q 007862 381 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG--RR--A------S--A 448 (587)
Q Consensus 381 ~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~--~~--~------~--~ 448 (587)
++.+...+-++..+...++.+. ..|. ++.+.++.|.++++++.++..+-... .+ + . .
T Consensus 134 sG~I~s~~dig~~l~i~fVsYf----G~r~-------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 134 SGLIASSYDIGNLLLIIFVSYF----GSRG-------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred ceeEeeecccchhhhhHhHHHh----cccc-------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence 3444455556666666554444 4443 55577889999998888877653211 00 0 0 0
Q ss_pred c--------------------cCC---Ccce--eehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHH
Q 007862 449 H--------------------LHP---MSQV--SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF 503 (587)
Q Consensus 449 ~--------------------~~~---~~~~--s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~ 503 (587)
+ ++. .... .+..++++-++.|+|+.-..+....|..|.+-++..+.+.|+.+...
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~ 282 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA 282 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence 0 000 0111 22245567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc-cc--------CCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 504 GFASYLSSLLITIVHGVT-AR--------HGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 566 (587)
Q Consensus 504 ~lg~~l~~~l~~~v~~~~-~~--------~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~ 566 (587)
.+|-++|..+........ +. ..++.|+ |-...-|.+.+++.++.++.++++-++.++
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI------GAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh------hHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 999999888877765432 11 1234453 223345667777777777777777665543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.084 Score=59.20 Aligned_cols=175 Identities=7% Similarity=-0.056 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhh-HHHHHHHHhhhc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-FASIAAILLAEH 100 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~~~~~~ 100 (587)
+....++..++-.+.-....-.+...+|-+..+.+.+++++.+++.++..++|+++++- -|+.... ++..+...+
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~--- 94 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGL--- 94 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHH---
Confidence 34444444444444444555566667899999999999999999999999999987552 3332211 111111110
Q ss_pred ccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcc
Q 007862 101 FVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 180 (587)
Q Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (587)
+..++....... ......++...++.++-.|+..|....+..+...+
T Consensus 95 --------~~~ll~~~~~~~---------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~---- 141 (521)
T PRK03612 95 --------SALILYAAFAFQ---------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ---- 141 (521)
T ss_pred --------HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 110110100000 00112233444566677777777666655442221
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhhhhhccc-ccch-hhHHHHHHHHHHHHHHHHHh
Q 007862 181 GVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSW-VIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 181 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~-~~~w-~~~f~i~~~~~~~~~~~~~~ 236 (587)
.-++..+..|...++|+++|.++.+++.- ..|- +..+.+..+..++++++++.
T Consensus 142 ---~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 142 ---HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred ---chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 13566788888899999999988887654 4563 45555555544545444333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.7 Score=51.12 Aligned_cols=163 Identities=8% Similarity=-0.017 Sum_probs=87.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCC-----hhhHHHHHHHHHHHHHHH-hhhhHHHhhccccchhhhhH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMN-----QTSAANILNIWGGVTNFA-PLLGAFISDTYIGRFKTITF 89 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s-----~~~~~~i~~~~~~~~~~~-~~~~G~laD~~~Gr~~~~~~ 89 (587)
+|.++...+.-+|--++|+.+-. +...+..+ .....++-....+.+.+. .++-+++++| ++|+|++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 44444444444444444442222 45555553 245556666555555544 7888999999 599999888
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCccc-----CCc----------chhHHHHHHHHHH
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK-----SAN----------SMQLGVLVMGLGL 154 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~l 154 (587)
....+.+ -.++.++.- .| ..+.-||. ..|+ .+. ......+++.--+
T Consensus 80 ~~~~F~~------------~f~lF~~vl-~p-----~~~~~~p~-~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 80 VISPFLG------------FFALFAFVI-YP-----LSDLLHPT-ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHH------------HHHHHHHHH-hc-----chhhcCCc-HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 6665555 332222210 00 00111111 0000 000 0111122222111
Q ss_pred HHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 007862 155 LSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 211 (587)
Q Consensus 155 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~ 211 (587)
.|.-...-.-.+++.|.++.+| -.|+++.++.+.|+|..+++.+..++.
T Consensus 141 --w~~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 --WGSVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred --HHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222256778999998765 788999999999999999999988875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.18 Score=50.91 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHH
Q 007862 418 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 497 (587)
Q Consensus 418 ~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~g 497 (587)
.+...+.+|.+...+++.+......++ ....+.|.+.....+.+.+.............+.+|+ .||++.|
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvg 134 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVG 134 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceeh
Confidence 455567777777777776655443211 1124555555555666677777777777778899996 5999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007862 498 LLFCSFGFASYLSSLLITIVH 518 (587)
Q Consensus 498 l~~~~~~lg~~l~~~l~~~v~ 518 (587)
+.-...++++.+-+.+...+.
T Consensus 135 ilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 135 ILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred hhhHHHHhHHHHHHHHHHHHc
Confidence 999999999888777665554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.023 Score=47.49 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeec
Q 007862 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTA 117 (587)
Q Consensus 39 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 117 (587)
.+.+.+.++.++|.++++++.+...+++.++.+...++.++ ..+++.+..++++..+ ..+.++++.
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~------------~~~~ma~~~ 78 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVL------------STAAMALTH 78 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHH------------HHHHHHHHh
Confidence 34556899999999999999999999999999999999999 5889999999998888 776666654
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.036 Score=59.82 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=90.5
Q ss_pred HhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhh-hhHHHHHHHHhhhcccccccccce-EEEeeeccCCCCC
Q 007862 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT-ITFASIAAILLAEHFVTKYQGKGM-LTVTLTAWLPQLH 123 (587)
Q Consensus 46 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 123 (587)
..-|++...+|.+.....++..++..++|.++||. ...|. ..+......+ +. .+...+.. +
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v------------~~~~l~~~t~~-~--- 356 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALV------------GTLMLLTCTLF-L--- 356 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH------------HHHHHHHhhcc-C---
Confidence 35578888999999999999999999999999995 55444 4444333333 31 11111110 0
Q ss_pred CCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC-CCCCcccccchhhhhhHHHHHHHHHHHH
Q 007862 124 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF-DATTDEGVKGINSFFNWYYTTFTVVILI 202 (587)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~i 202 (587)
+ ....++.-..+.|+..-+..|.-.-+.+|.. |..| +.-.|......++-+.+
T Consensus 357 ---~----------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~gq~f~~~ 410 (480)
T KOG2563|consen 357 ---G----------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSGQIFGVI 410 (480)
T ss_pred ---C----------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeehhHHHHH
Confidence 0 2234555667778888888999998888884 4432 22333333344444444
Q ss_pred Hhhhhhhcccccc---hhh-HHHHHHHHHHHHHHHHHhccceeeee
Q 007862 203 TQTVLVYIQDSVS---WVI-GFGIPTVLMIGAIILFLVGKKLYVLV 244 (587)
Q Consensus 203 ~~~~~~~i~~~~~---w~~-~f~i~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
-.++-+...+..+ |.. .-+...+...+.+++..+.+++|++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 411 LVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred HHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 4455555555544 333 22223344444555555666666443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0053 Score=69.03 Aligned_cols=168 Identities=12% Similarity=0.091 Sum_probs=3.0
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH----Hhhh------------
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE----RGRR------------ 445 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~----~~~~------------ 445 (587)
+.+...+-++.++...++.++ .+|- ++.+.++.|.++++++.+++.+-. ....
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 344445556666666665554 4432 556788888888888887766421 0000
Q ss_pred --ccc--------c-----c----CCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHH
Q 007862 446 --ASA--------H-----L----HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFA 506 (587)
Q Consensus 446 --~~~--------~-----~----~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg 506 (587)
... . . ......-+.+++++-++.|+|..-..+...+|..|.++++..+.+.|+.+....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 001 0 0 00112234556778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc----cc--------cCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 507 SYLSSLLITIVHGV----TA--------RHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 566 (587)
Q Consensus 507 ~~l~~~l~~~v~~~----~~--------~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~ 566 (587)
..+|..+.+.+... .. ...++.|+. -...-|.+.+.+.++.++.+..+-|+..+
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG------AWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG------AWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHH------HHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 99887777665532 11 112344432 12234455666666666666666554433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.02 Score=63.06 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCccchhHHHHHHHHHHHHhh-hhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhH-HHhhccccchhhhhHHH
Q 007862 14 GGWKAMPYILGNETFERLATI-GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA-FISDTYIGRFKTITFAS 91 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G-~laD~~~Gr~~~~~~~~ 91 (587)
++-|.++.+....++...--. +-.-.++.|+...+++++.+.+...+..+....+++++.. .+.-. +|-|+++.+|+
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl 315 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL 315 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence 344555554444443333322 2221446788889999999999999999999999999988 55666 79999999999
Q ss_pred HHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 92 IAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
....+ +.++.+++. +.++.+....+. ...+...|...++.+
T Consensus 316 ~~~~~------------~~~~~af~~--------------------------~~w~~~~~~v~~-~~~~~~~pa~~s~~s 356 (463)
T KOG2816|consen 316 LSEFL------------QLLLFAFAT--------------------------ETWMMFAAGVVV-ALAGIVFPAIRAFAS 356 (463)
T ss_pred HHHHH------------HHHHHHHhc--------------------------cchhhhHHHHHH-HhhcchhHHHHhHHH
Confidence 99999 888888866 455666665544 445666888999999
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 211 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~ 211 (587)
.+.++++ +|+.+++......+...++|.+-+.+.
T Consensus 357 ~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 357 ILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 9988866 999999999999999999999877663
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=9.3 Score=39.87 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------------CChhhHHHHHHHHHHHHHHHhhhhHHHhhccccc
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYH--------------MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR 83 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~--------------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr 83 (587)
....-.+..+|++++|..+.+-.---+.++.+ -.....|.++..-.+-..+.-+.+-+.-||+ --
T Consensus 13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rf-pf 91 (409)
T KOG3880|consen 13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRF-PF 91 (409)
T ss_pred cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhc-cc
Confidence 44555677788888887555543333333332 1111244455444555555566666778884 44
Q ss_pred hhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccc
Q 007862 84 FKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIR 163 (587)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 163 (587)
-+=+.+..++.+. |+++.+++. +.++-++|..+.+++.|.-.
T Consensus 92 ~~Ri~~~v~~sa~------------s~~lVafs~--------------------------s~~~sL~GV~~aSissGlGE 133 (409)
T KOG3880|consen 92 GFRIALVVLLSAL------------SFFLVAFSN--------------------------SVPMSLLGVVFASISSGLGE 133 (409)
T ss_pred chHHHHHHHHHhc------------ceEEEEecc--------------------------chhHHHhhhhhhhhcCCcce
Confidence 4445666677778 999999987 66778888889999988877
Q ss_pred ccccccccc
Q 007862 164 PCSIPFGVD 172 (587)
Q Consensus 164 ~~~~~~~~~ 172 (587)
..-.++-+.
T Consensus 134 iTFL~lss~ 142 (409)
T KOG3880|consen 134 ITFLALSSR 142 (409)
T ss_pred eehhhhhcc
Confidence 666554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.59 Score=51.08 Aligned_cols=137 Identities=10% Similarity=0.108 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEe
Q 007862 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVT 114 (587)
Q Consensus 35 ~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 114 (587)
+.-..+..|++.+ |+|+...|..=+.-.+....+..+..++-+| +|-.|+=++++..... ...+..
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~------------~L~~~v 341 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWV------------CLALCV 341 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHH------------HHHHHH
Confidence 3345577888877 9999999999999999999999999999999 6999999999886554 333322
Q ss_pred eeccCCCCCCCCCCCCCCCCCcccCC-cchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH
Q 007862 115 LTAWLPQLHPPKCDVAKPPFGQCKSA-NSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 193 (587)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (587)
.+-+.|. ++ +..+...++.+..+--+|-=++--+...++-|..|+++ ||...+...
T Consensus 342 ~~~~~~~-----------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~ 398 (432)
T PF06963_consen 342 VSFWAPG-----------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQN 398 (432)
T ss_pred HHHhcCC-----------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHH
Confidence 2222221 01 23356677777777779999999999999999999865 999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 007862 194 TTFTVVILITQTVLV 208 (587)
Q Consensus 194 ~~~~~g~~i~~~~~~ 208 (587)
...++--.+-..++-
T Consensus 399 sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 399 SLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888887766654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.5 Score=48.02 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhC---CchhhHH
Q 007862 418 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF---PDHMKSI 494 (587)
Q Consensus 418 ~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~---P~~~rg~ 494 (587)
+++.-+++|.++..++.+.++.... ...+.......+++..+|.++.....-+...|.. |.+ +|.
T Consensus 57 rr~~Y~~i~~~~~~~~~~~~~~~~~-----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~ 124 (433)
T PF03092_consen 57 RRKPYMIIGWLLGAVSALVLALLPA-----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGD 124 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccc-----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHH
Confidence 3445566666666555555544321 1124444555667788888888888777777666 333 778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 495 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 495 ~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
..+.......+|+.++..+.+.+.+.. ++...|.+.+.+.++..+..+++.+|
T Consensus 125 lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 125 LQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 888888899999999988887765422 12234566666666666666666555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.9 Score=40.37 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=54.0
Q ss_pred eehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007862 457 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 518 (587)
Q Consensus 457 s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~ 518 (587)
+.+.+.+.-++.|++.+......-.+..+...++.+++..|+.....+.+.++|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999988888876655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.05 E-value=49 Score=35.86 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=47.4
Q ss_pred eehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007862 457 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI 514 (587)
Q Consensus 457 s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~ 514 (587)
+-+|.+....++++..+-.......++.+.+|++++..+..+..+.-..|-..|+.+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5567777888999999999999999999999999999988887777666666665443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.15 E-value=3.4 Score=45.15 Aligned_cols=128 Identities=10% Similarity=0.019 Sum_probs=84.4
Q ss_pred ccccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC--Ccceeeh
Q 007862 382 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP--MSQVSVF 459 (587)
Q Consensus 382 ~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~--~~~~s~~ 459 (587)
+..+....+..++.+|+.+...|+--.|++|| +..+..+.....+++++.++..+...-.++... .-.-...
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR------RPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~ 143 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR------RPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIV 143 (498)
T ss_pred cccccccccccceecccccccccccccccccc------cchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHH
Confidence 44555667777888888888855555555443 355777777788888877766543222111110 1112233
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 007862 460 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI-ANSLLFCSFGFASYLSSLLIT 515 (587)
Q Consensus 460 ~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~lg~~l~~~l~~ 515 (587)
..++.+-+.=++.-.+..+.=++..+...++.|-+ +++.+.+...+|+.+|-++.+
T Consensus 144 ~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 144 LFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 34445556666776777777888888888777777 999999999999999876665
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.82 E-value=11 Score=40.08 Aligned_cols=95 Identities=13% Similarity=-0.013 Sum_probs=52.0
Q ss_pred ceeehHHHHHHHHHHHHHHHHhhhhHHHHH-----hhCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCC
Q 007862 455 QVSVFWLAPQLILMGFCEAFNIIGQIEFFN-----KQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPD 528 (587)
Q Consensus 455 ~~s~~~li~~~~l~~~ge~~~~~~~~~~~~-----~~~P~~~rg~~~gl~~-~~~~lg~~l~~~l~~~v~~~~~~~~~~~ 528 (587)
..+...+.++-++.|++..+.+...-++.. +.+|++..+...+... +.+.+-.+++..+...+.+..
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~------- 190 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF------- 190 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-------
Confidence 457778888999999999998887666554 3445554444444333 334444444444444433211
Q ss_pred CccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 529 WLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 529 w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
. .+...+|.....+.+++.++.....+|
T Consensus 191 ------~-~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 191 ------G-FGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred ------C-CCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 0 112345666666666666554433333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=84.44 E-value=43 Score=37.19 Aligned_cols=58 Identities=12% Similarity=-0.045 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhh-hhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007862 461 LAPQLILMGFCEAFNII-GQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 518 (587)
Q Consensus 461 li~~~~l~~~ge~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~ 518 (587)
....|+...+-...... ..+.+++|....++..+.-++.....++|..+++.+...+.
T Consensus 131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444444 88999999999999999999999999999999998877665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.88 E-value=6.8 Score=41.13 Aligned_cols=121 Identities=15% Similarity=-0.001 Sum_probs=75.2
Q ss_pred ccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhH
Q 007862 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 89 (587)
+++++.-|.++++...-++...+ |.-..++-..+..++| ..+.+.+ .......+++.+.+..+ +|-|.++.+
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a-~~gl~nlq~~vn~~lg--~~sl~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~l 93 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTA-YLGLQNLQTSVNYDLG--TVSLGAL----YLSLIDSSMFMPLLIRF-LGTKWTMVL 93 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCcc--cchhhhh----hHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 34455567777766655555444 4445565555554333 3333333 33344445555577777 699999999
Q ss_pred HHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 90 ASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
+...+.+ -. +..+. ..+-.++.+-...|+|++.+...-.++
T Consensus 94 av~~Y~l------------yi-----A~Nl~----------------------pr~~tlVPa~~~~G~aa~p~W~SkgtY 134 (390)
T KOG3097|consen 94 AVFPYAL------------YI-----AANLE----------------------PRYETLVPAGLVLGMAAGPIWASKGTY 134 (390)
T ss_pred HHHHHHH------------HH-----Hhhcc----------------------hhHHhhccHHHhhccccccccccCcce
Confidence 9988777 21 22111 144557888888999999999888888
Q ss_pred ccccCCCC
Q 007862 170 GVDQFDAT 177 (587)
Q Consensus 170 ~~~~~~~~ 177 (587)
+++.-+..
T Consensus 135 lT~~g~~y 142 (390)
T KOG3097|consen 135 LTPMGQNY 142 (390)
T ss_pred ecHHHHHH
Confidence 87766543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.81 E-value=15 Score=40.55 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=74.2
Q ss_pred HHhhhhHHH---hhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchh
Q 007862 68 FAPLLGAFI---SDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 144 (587)
Q Consensus 68 ~~~~~~G~l---aD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (587)
++..+.+.+ .++ +||++++.++.++..+ +.++..+.. |- |+.-.|+-.....-..+
T Consensus 294 ~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~------------~~~li~l~~--p~------dap~~~t~~~~~~~~~~ 352 (461)
T KOG3098|consen 294 IGGLDFSILSKRIRG-FGRKPTVLIGIIIHLI------------GFLLIHLSF--PN------DAPLRPTDSPPLLFTPS 352 (461)
T ss_pred HHHHHHHHHhhhhhh-cccCcchhHHHHHHHH------------HHHHHhccc--cc------cCCCCCCcccccccccc
Confidence 344444555 466 5999999999999888 665544432 11 11111222222222224
Q ss_pred HHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhh
Q 007862 145 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY 209 (587)
Q Consensus 145 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 209 (587)
.....+.-++.|++-+......+.++++..|+ .|..+++++-.-..++..+.......
T Consensus 353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-------~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 353 YYLALIIGFLLGFGDACFNTQRYVIIALLYPD-------DRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-------chHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55566666889999999999999999999964 27888888888777777766554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=80.64 E-value=51 Score=35.92 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=47.6
Q ss_pred eeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007862 456 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 519 (587)
Q Consensus 456 ~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~ 519 (587)
.++.++-+.-++.|++.+. -..-++|.+..+|++.--+++|......-+|..+++.+.-.+..
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666554 55677889999998888889988888888888888887776653
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 587 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 5e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 355 bits (914), Expect = e-116
Identities = 112/580 (19%), Positives = 206/580 (35%), Gaps = 68/580 (11%)
Query: 10 QKKPGGW-KAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIW 62
W + +PYI+ +E ER + G+ +L+ + A ++ + +
Sbjct: 4 PVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSF 63
Query: 63 GGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQL 122
F PLLG +I+D + G++ TI + S+ + G + +
Sbjct: 64 VIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV------------GHAFLAIFE----- 106
Query: 123 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGV 182
+ GL L+++G+GGI+P F DQFD
Sbjct: 107 --------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNK 143
Query: 183 KGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYV 242
F+ +Y T + + + + FGIP VLM A + F +G+K Y+
Sbjct: 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYI 203
Query: 243 LVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 302
+ PE G V+ +A + + + L +P L
Sbjct: 204 HMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVL--ALIGGVSAAYALVNIPTLGIVAGL 261
Query: 303 NKAAMIVDNN-ELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTF 361
A ++V + V+ V+ +++I+ ++A + Q+ +
Sbjct: 262 CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKAST 321
Query: 362 TVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ 421
+ QA M + P + ++ + + L +PF + VL PA+ ++ +T L+
Sbjct: 322 WILQANDMVKP----QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALR 374
Query: 422 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIE 481
++G G+ + LS IV G ++ + +S+FW L+ F E +E
Sbjct: 375 KMGAGIAITGLSWIVVGTIQLMMDGGSA------LSIFWQILPYALLTFGEVLVSATGLE 428
Query: 482 FFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 541
F Q P MK S S + L V T + +
Sbjct: 429 FAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQM 485
Query: 542 FYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 581
F+F AG L + F AR Y+ + + +L
Sbjct: 486 FFF--AGFAILAAIVFALYARSYQMQDHYRQATGSENLYF 523
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 74/506 (14%), Positives = 163/506 (32%), Gaps = 86/506 (16%)
Query: 17 KAMPYILGNETFERLATIGLLANFMVYLLKEY-----HMNQTSAANILNIWGGVTNFAPL 71
+ + E +ER + G+ A + Y+ H+ + +AA+I+ I+ + +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 72 LGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAK 131
+G F++D IG + +L+
Sbjct: 73 IGGFVADRIIGARPAVF---WGGVLIM--------------------------------- 96
Query: 132 PPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 191
G A L + L+ IGTG ++P + DE + ++ F+
Sbjct: 97 --LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY----DEHDRRRDAGFSI 150
Query: 192 YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIF 251
+ + I ++ Q++ + + F + + M ++++ G K +
Sbjct: 151 FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP------- 203
Query: 252 SGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDN 311
+ A ++ + L + + G + ++ + L ++
Sbjct: 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGF-------IAIIVVMNLVGWNSLPAYINLLTIV 256
Query: 312 NELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGT-FTVSQAMKMN 370
P + E ++ ++ IP++ A ++ Q A +++
Sbjct: 257 AIAIPVFYFAWMISSVKVTSTEHLR-VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD 315
Query: 371 RHLGPK--FQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 427
P FQ + P + + + LW A +K + + +G+
Sbjct: 316 SSWFPVSWFQSLNPLFIMLYTPFFAWLWT---------AWKKN-----QPSSPTKFAVGL 361
Query: 428 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 487
+F+ LS ++ + A +VS WL L+ E + K
Sbjct: 362 MFAGLSFLLMAI------PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415
Query: 488 PDHMKSIANSLLFCSFGFASYLSSLL 513
P S S+ F S S L++ L
Sbjct: 416 PKAFNSQMMSMWFLSSSVGSALNAQL 441
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 6e-07
Identities = 94/642 (14%), Positives = 180/642 (28%), Gaps = 208/642 (32%)
Query: 24 GNETFERLATIGLLANFMVYLLKEYHM--NQTSAANIL------NIWGGVTNFAPLLGAF 75
E ++ L N+ +L+ Q S + ++ FA
Sbjct: 75 QEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129
Query: 76 ISDTYIGRFKTITFASIAAILL---AEHFVTKYQGKGML----TVTLTAWLPQLHPPKCD 128
+ R + + LL V G+L T + + + +C
Sbjct: 130 ----NVSRLQPYL--KLRQALLELRPAKNVLID---GVLGSGKTW-VALDVCLSYKVQC- 178
Query: 129 VAKPPF-------GQCKSANSMQLGVLVMGLGLLSIGTGGIRP--CSIPFGVDQFDATTD 179
K F C S + VL M LL I P S
Sbjct: 179 --KMDFKIFWLNLKNCNSPET----VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIH 228
Query: 180 EGVKGINSFF-NWYYTTFTVVILITQTVLVYIQDSV--SWVI-GFGIP-TVLMI---GAI 231
+ + Y +++L +V + F + +L+ +
Sbjct: 229 SIQAELRRLLKSKPYEN-CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 232 ILFLVGKKLY--VLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 289
FL L ++ + L+ Y L D P + V
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQ---------DLPRE--V 322
Query: 290 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC--LIKIIPIWAA 347
L+ P ++I E DG + W + V C L II +
Sbjct: 323 LTTNPRRL--------SIIA---ESIRDG--LATW-----DNWKHVNCDKLTTII---ES 361
Query: 348 GIISLTSISQQGTFTVSQAMKMNRHLG--PK-FQIPPGTVGVISMITIGLW--LPFYDTV 402
+ L + F L P IP + + +W + D +
Sbjct: 362 SLNVLEPAEYRKMF---------DRLSVFPPSAHIPTILLSL-------IWFDVIKSDVM 405
Query: 403 LVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 462
+V + K+ K+ +L+++ SI S+ + V+ + H
Sbjct: 406 VV--VNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALH------------- 446
Query: 463 PQLILMGFCEAFNIIGQIEF--FNKQFPD---------HMKSIAN-------SLLFCSFG 504
+ I+ + +NI + + D H+K+I + ++F F
Sbjct: 447 -RSIV----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 505 F--------------ASYLSSLLITIV----HGVTARHGHPDWLTNDIDAGRLDYFYFLI 546
F + + + L + + + + L N I LD FL
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAI----LD---FLP 553
Query: 547 AGLGGLNIVYFLYCARRYRYKSGIQ-SLEDQNDLELVDPTKQ 587
N++ +Y ++ +L +++ + KQ
Sbjct: 554 K--IEENLI-------CSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.85 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.82 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.29 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.2 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.08 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.05 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.88 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.71 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.98 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=290.66 Aligned_cols=463 Identities=16% Similarity=0.232 Sum_probs=297.3
Q ss_pred ccccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhc-cc
Q 007862 8 KDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-----YHMNQTSAANILNIWGGVTNFAPLLGAFISDT-YI 81 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~ 81 (587)
++++.++++|.++.+....+++++++|++...++.|+.++ +|+|..+.+++.+++.++..++++++|+++|| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~- 82 (491)
T 4aps_A 4 KGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII- 82 (491)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 4455667888999999999999999999999999999998 99999999999999999999999999999999 6
Q ss_pred cchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccc
Q 007862 82 GRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGG 161 (587)
Q Consensus 82 Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 161 (587)
|||+++.++.++..+ +.++++++. +.+.++++|+++|+|.|.
T Consensus 83 g~r~~~~~~~~~~~~------------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 83 GARPAVFWGGVLIML------------GHIVLALPF--------------------------GASALFGSIILIIIGTGF 124 (491)
T ss_dssp CHHHHHHHHHHHHHH------------HHHHHHSCC--------------------------STTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH------------HHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHh
Confidence 999999999999999 887776654 567799999999999999
Q ss_pred ccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007862 162 IRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY 241 (587)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~ 241 (587)
..|+..++++|++|+++ +.|++++++++...++|..++|.+++++.+..|||+.|++.++..+++++++++..+++
T Consensus 125 ~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999855 55888999999999999999999999999999999999998877777666655443332
Q ss_pred eeeC---CCCC-hhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCC
Q 007862 242 VLVE---PEGS-IFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPD 317 (587)
Q Consensus 242 ~~~~---~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 317 (587)
..++ +++. ...+..+. .+......-. ...... ........++.+................
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~----~~~~g~~l~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 264 (491)
T 4aps_A 201 LDPHYLRPTDPLAPEEVKPL----LVKVSLAVAG----FIAIIV----VMNLVGWNSLPAYINLLTIVAIAIPVFY---- 264 (491)
T ss_dssp CCSCCSCCSCCCSHHHHHHH----HHHCCCCCHH----HHHHHH----HHHHHSSCCTTHHHHHHHHHHHHHHHHH----
T ss_pred ccccccCCCCccccchhHHH----HHHHHHHHHH----HHHHHH----HHHhccCcccccchhhhhHHHHHHHHHH----
Confidence 2211 1111 11110000 0000000000 000000 0000000000000000000000000000
Q ss_pred CCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeec-cccccCCCccccCcccccccchhhhhhhh
Q 007862 318 GTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWL 396 (587)
Q Consensus 318 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~i~~~l~~ 396 (587)
....|+... ....++++......++.....++..+.+..+....+.. ..+... ...+.....+.+..++..
T Consensus 265 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 336 (491)
T 4aps_A 265 --FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYT 336 (491)
T ss_dssp --HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHH
T ss_pred --HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHH
Confidence 000011000 01122333344445555555556655554443211111 111111 335566667777777777
Q ss_pred hchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHh
Q 007862 397 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI 476 (587)
Q Consensus 397 ~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~ 476 (587)
++.+++ .+|+++|+ ......+..|+++.++++++......... .....+.+++++.+++.+++++...
T Consensus 337 ~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~ 404 (491)
T 4aps_A 337 PFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALYG------TSGKVSPLWLVGSWALVILGEMLIS 404 (491)
T ss_dssp HHHHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHCC------CCTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHH----HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHHHHHHHh
Confidence 776665 77776663 24556677888888888777665432100 0123467778888899999999999
Q ss_pred hhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH
Q 007862 477 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY 556 (587)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~ 556 (587)
+..++++.+.+|++.||+++|+.++...+|..+++.+.+.+.+. ++...|..++++++++.++
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776531 2345677788888877777
Q ss_pred HHHHHhhhcc
Q 007862 557 FLYCARRYRY 566 (587)
Q Consensus 557 ~~~~~~~~~~ 566 (587)
.+++.++.++
T Consensus 468 ~~~~~~~~~~ 477 (491)
T 4aps_A 468 LVFLSKRIQG 477 (491)
T ss_dssp HHHC------
T ss_pred HHHHHHHHHH
Confidence 7666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=286.06 Aligned_cols=485 Identities=22% Similarity=0.340 Sum_probs=290.9
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-cchh
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFK 85 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Gr~~ 85 (587)
++++|.++.+.+..+++++++|++...++.|+++++| +|..+.+++.+++.++..++++++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4566788899999999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred hhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccc
Q 007862 86 TITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPC 165 (587)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 165 (587)
++.++.++..+ +.+++.++.. +.+.++++|+++|++.|...|+
T Consensus 87 ~~~~~~~~~~~------------~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 87 TILWLSLIYCV------------GHAFLAIFEH-------------------------SVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp HHHHHHHHHHH------------HHHHHHHTSS-------------------------CHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHH------------HHHHHHHhcc-------------------------cHHHHHHHHHHHHHhccccchh
Confidence 99999999888 7776655431 5677899999999999999999
Q ss_pred ccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeC
Q 007862 166 SIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVE 245 (587)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
..++++|.+|+++ +..+...+++++...++|..++|.+++++.+..+|++.|++.++..+++++++++.+++...++
T Consensus 130 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (524)
T 2xut_A 130 VSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMP 206 (524)
T ss_dssp HHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC
T ss_pred HHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 9999999999755 1112455666999999999999999999998899999999988887776666655444433222
Q ss_pred CCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHH----hhhccCCCCCCCCCCC
Q 007862 246 PEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKA----AMIVDNNELKPDGTPV 321 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~ 321 (587)
+++++.....+.+....++++... . ...................+.++...+... ...... ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 274 (524)
T 2xut_A 207 PEPKDPHGFLPVIRSALLTKVEGK-G----NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-------VGA 274 (524)
T ss_dssp --------------------CTTH-H----HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-------HHT
T ss_pred CCCccchhHHHHHHHHHhhhhccc-C----ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-------ccc
Confidence 222211111111111111110000 0 000000000000000000000000000000 000000 000
Q ss_pred Cccc-------cccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhh
Q 007862 322 NQWR-------LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGL 394 (587)
Q Consensus 322 ~~w~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l 394 (587)
.+|+ .+......+.|+.......+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~ 350 (524)
T 2xut_A 275 GASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVML 350 (524)
T ss_dssp GGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHH
T ss_pred chhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHH
Confidence 1220 011112233444444444555555555555555554433322222110 0 1345566677788888
Q ss_pred hhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHH
Q 007862 395 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF 474 (587)
Q Consensus 395 ~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~ 474 (587)
..++.+++..+..+|.++| .+..+.+..|+++.+++++.+........ .....+.+++++.+++.+++++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~ 421 (524)
T 2xut_A 351 LIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSALSIFWQILPYALLTFGEVL 421 (524)
T ss_dssp HGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHHHHHHHHHH
Confidence 8888888765655655333 24556777888888877776654321100 01134677788889999999999
Q ss_pred HhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccC-CCCCcchhHHHHHHHHHHHHH
Q 007862 475 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLN 553 (587)
Q Consensus 475 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~l~ 553 (587)
..+..+++..+.+|++.||+++|+.++..++|+.+++.+.+.+.+.+ ..+|... .. +...+.|++.+++.+++
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGM--SVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccccc--cccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876432 0123110 00 01123377778888888
Q ss_pred HHHHHHHHhhhccccC
Q 007862 554 IVYFLYCARRYRYKSG 569 (587)
Q Consensus 554 ~v~~~~~~~~~~~~~~ 569 (587)
.++++++.+++++++.
T Consensus 496 ~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 496 AIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHhccchh
Confidence 8777777766655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=247.65 Aligned_cols=399 Identities=11% Similarity=-0.026 Sum_probs=248.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|+.++......++..+..+.....+ +++.+++ .|..+.+++.+++.++..++.+++|+++|| +|||++++++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 3444444555555555555444444 4567778 999999999999999999999999999999 599999999999999
Q ss_pred HhhhcccccccccceEEEee----eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 96 LLAEHFVTKYQGKGMLTVTL----TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
+ +.+++++ +. +++.++++|+++|++.|...++..++++
T Consensus 104 ~------------~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 145 (451)
T 1pw4_A 104 A------------VMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMV 145 (451)
T ss_dssp H------------HHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred H------------HHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 9 8887777 44 5667999999999999999999999999
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCCh
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSI 250 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
|.+|+++ |++++++.....++|..++|.+++++.+..+ ||+.|++.+++.++..++.++..++.+...... +
T Consensus 146 ~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 218 (451)
T 1pw4_A 146 HWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP-P 218 (451)
T ss_dssp TTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC-S
T ss_pred HHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC-C
Confidence 9999754 9999999999999999999999999888888 999999988776665554433333211100000 0
Q ss_pred hhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce
Q 007862 251 FSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ 330 (587)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 330 (587)
. .+ .. ....++. . + ...+..+++.....
T Consensus 219 ~------------------~~---~~-----~~~~~~~--------------------~--~----~~~~~~~~~~~~~~ 246 (451)
T 1pw4_A 219 I------------------EE---YK-----NDYPDDY--------------------N--E----KAEQELTAKQIFMQ 246 (451)
T ss_dssp C------------------TT---TC-----CC---------------------------------------CCTHHHHH
T ss_pred h------------------hh---hc-----ccccccc--------------------h--h----hhhcccccccchHH
Confidence 0 00 00 0000000 0 0 00000000000000
Q ss_pred eeehhhhhhhhhHH-HHHHHHHHhhhccccceeeeeeccccccCCCccccCc---ccccccchhhhhhhhhchhhhhHHH
Q 007862 331 QVEEVKCLIKIIPI-WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVPA 406 (587)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~i~~i~~~l~~~l~~~l~~~l 406 (587)
.....+.++..... +.....+...... .+.+. ....+ .++ +.+.....++.++..++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l---- 311 (451)
T 1pw4_A 247 YVLPNKLLWYIAIANVFVYLLRYGILDW-SPTYL------KEVKH----FALDKSSWAYFLYEYAGIPGTLLCGWM---- 311 (451)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHB------TTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 00001111111111 1111111111111 11111 11111 111 233344445555555554444
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 007862 407 LRKITKHEGGITLLQRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK 485 (587)
Q Consensus 407 ~~r~~~r~~~~~~~~~i~~G~i~~~-~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~ 485 (587)
.||+.+ .+++.+..+.++.. ++++.+... ...+.+.+....++.+++.....+....+..+
T Consensus 312 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 312 SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 666511 12233444444333 444443321 11245556667778888888888888999999
Q ss_pred hCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 486 QFPDHMKSIANSLLFCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 486 ~~P~~~rg~~~gl~~~~~~l-g~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
.+|++.||+++|+.+....+ |..+++.+.+.+.+.. ++...|...+++.+++.+..++..++
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999999998887532 34567788888888777766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=241.26 Aligned_cols=429 Identities=11% Similarity=0.031 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHhhC--------CChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 36 LLANFMVYLLKEYH--------MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 36 ~~~~~~~yl~~~~~--------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+.....++++++++ .++++.+++.+++.++..++++++|+++|| +|||++++++.+++++
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i----------- 97 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFI----------- 97 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH-----------
Confidence 33444456666653 234567899999999999999999999999 5999999999999999
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.++++++.......... ..-...-..++..++++|+++|+|.|+..++++.+++|..|+++ |++
T Consensus 98 -~~i~~a~~~~~~~~~~~~--------~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~ 162 (491)
T 4gc0_A 98 -SGVGSAWPELGFTSINPD--------NTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGK 162 (491)
T ss_dssp -HHHHHHCTTTTTSCSSSS--------SSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHH
T ss_pred -HHHHHHHHhhhhhhhcch--------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhh
Confidence 877766532110000000 00000012378899999999999999999999999999999855 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccc--------ccchhhHHHHHHHHHHHHHHHHHhccceee---eeCCCCChhhhHHH
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQD--------SVSWVIGFGIPTVLMIGAIILFLVGKKLYV---LVEPEGSIFSGIGQ 256 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~--------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 256 (587)
..++......+|..+++.++..+.. ...||+.+.+..+..++.++..+. .++.+ ..+.+........+
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~ 241 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILR 241 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHH
Confidence 9999999999999999888766543 245777777766655544443322 11110 00000000000000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
....+... ++.....+...... + .+. ........+
T Consensus 242 ---~~~~~~~~-----------------------------~~~~~~~~~~~~~~-~---------~~~---~~~~~~~~~ 276 (491)
T 4gc0_A 242 ---KIMGNTLA-----------------------------TQAVQEIKHSLDHG-R---------KTG---GRLLMFGVG 276 (491)
T ss_dssp ---HHHHHHHH-----------------------------HHHHHHHHHHHHHH-H---------HHT---THHHHSCCT
T ss_pred ---HhcCCchh-----------------------------HHHHHHHHHHHHhh-h---------hhh---hHHHHhccc
Confidence 00000000 00000000000000 0 000 000000011
Q ss_pred hhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCC
Q 007862 337 CLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 416 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~ 416 (587)
.......... +..+........+...... ..+ ...........+..+..++...+ ...+.||++||
T Consensus 277 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr--- 342 (491)
T 4gc0_A 277 VIVIGVMLSI-----FQQFVGINVVLYYAPEVFK-TLG-ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK--- 342 (491)
T ss_dssp HHHHHHHHHH-----HHHHTCHHHHHHHHHHHHH-HSS-CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH---
T ss_pred HHHHHHHHHH-----HHHHhhhhHHHhcchHHHH-hcC-CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc---
Confidence 1111100000 0000000000000000000 010 00000111112222233333333 33346776443
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHH
Q 007862 417 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 496 (587)
Q Consensus 417 ~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~ 496 (587)
+.+..+.....++++..+..... ...+...++..+++.........|..+.+..|.+|++.|++++
T Consensus 343 ----~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~ 408 (491)
T 4gc0_A 343 ----PLQIIGALGMAIGMFSLGTAFYT----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 408 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHH
T ss_pred ----chhccchHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHH
Confidence 55566666666666555543221 1112222222223333334445677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 007862 497 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 575 (587)
Q Consensus 497 gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~ 575 (587)
|+.+..+++++.+++.+.|.+.... |... ..+....|++++++++++.++.+++.||+|+++.||.++.
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 9999999999999998887765321 0000 0012356788899999999999999999999999887655
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=228.59 Aligned_cols=357 Identities=9% Similarity=-0.007 Sum_probs=228.8
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+++++.+..+....++..+... ....+.+++.+++|.|..+.+++.+++.++..++.+++|+++|| +|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 4445555555555555555554 44555556899999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEE---eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
+..+ +.++. ..+. +++.++++|++.|+|.|...+...++
T Consensus 100 ~~~~------------~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 100 LYAL------------GAALFWPAAEIM--------------------------NYTLFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHH------------HHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHHHhccccc--------------------------cHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 9999 88777 4433 78889999999999999999999999
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc-cccc-------------------------hhhHHHHH
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS-------------------------WVIGFGIP 223 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~-~~~~-------------------------w~~~f~i~ 223 (587)
++|.+|+++ |++.++++....++|..++|.+++++. +..+ ||+.|++.
T Consensus 142 ~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 142 VTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 999999865 999999999999999999999999998 5554 99999876
Q ss_pred HHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHH
Q 007862 224 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 303 (587)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (587)
++..++..++++..+. |+..+. .++ +.+ .....
T Consensus 216 ~~~~~~~~~~~~~~~~------p~~~~~-----------------~~~---~~~----------------~~~~~----- 248 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKF------PALQSD-----------------NHS---DAK----------------QGSFS----- 248 (438)
T ss_dssp HHHHHHHHHHHHHCCC------CCCTTT-----------------CCC---CSS----------------TTSHH-----
T ss_pred HHHHHHHHHHHHHHcC------Cccccc-----------------ccc---ccc----------------ccchh-----
Confidence 6655554444333211 110000 000 000 00000
Q ss_pred HHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhHH-HHHHHHHHhhhccccceeeeeeccccccCCCccccCcc
Q 007862 304 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI-WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 382 (587)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 382 (587)
.+++. .-..+.++..+.. +...........+.+.+...+..+.+. ...+
T Consensus 249 ------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~ 298 (438)
T 3o7q_A 249 ------------------ASLSR-----LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAA 298 (438)
T ss_dssp ------------------HHHHH-----HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHH
T ss_pred ------------------hhHHH-----HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHH
Confidence 00000 0001111111111 111111111111111110111101110 0112
Q ss_pred cccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHH
Q 007862 383 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 462 (587)
Q Consensus 383 ~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li 462 (587)
.......+..++..++..++ .||+ ++++.+..+.++..++.+..... +..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 351 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWL----ISRF-------APHKVLAAYALIAMALCLISAFA----------------GGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------cchHHHHHHHHHHHHHHHHHHHc----------------CCcHHH
Confidence 33333444445555544444 6665 34456666666666666555432 112334
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 463 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 521 (587)
Q Consensus 463 ~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~ 521 (587)
..+++.+++.+...|..+.+..+.+|++ ++.++++.. ...+|..+++.+.+.+.+..
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4557788899999999999999999987 899999877 67799999999998887643
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-22 Score=208.62 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
+....++..+........++ .+.+++|.|..+.+++.+++.++..++.+++|+++|| +||||++.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~----- 77 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFML----- 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHH-----
Confidence 34445555555554555554 4678999999999999999999999999999999999 5999999999999999
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
+.++..++. +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 78 -------~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 121 (375)
T 2gfp_A 78 -------ATLVAVTTS--------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ--- 121 (375)
T ss_dssp -------HHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred -------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---
Confidence 877776655 77889999999999999999999999999999755
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
|++.++++....++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 122 ---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 122 ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999989999999987776555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-21 Score=209.51 Aligned_cols=389 Identities=11% Similarity=0.018 Sum_probs=219.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
..+......++...++....++++.|+++++|+|..+.+++.+++.++..++++++|+++|| +||||+++++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~- 85 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV- 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH-
Confidence 45556666666667777778899999999999999999999999999999999999999999 5999999998887655
Q ss_pred hhcccccccccceEEE---eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 98 AEHFVTKYQGKGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
+.... .++.. ....++.++.+.+++.|...+...+...+..
T Consensus 86 -----------~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 129 (417)
T 2cfq_A 86 -----------MFAPFFIFIFGPL-------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFI 129 (417)
T ss_dssp -----------CHHHHHHHTHHHH-------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 32111 11100 0001234555556666555555555554444
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
++. .++++..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++ +++. ..
T Consensus 130 ~~~----~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~-~~--- 196 (417)
T 2cfq_A 130 EKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSS-AT--- 196 (417)
T ss_dssp HHH----HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCS-SC---
T ss_pred HHh----hhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccc-cc---
Confidence 321 1235666777777789999999999999876 589999987665543333322221111 0000 00
Q ss_pred HHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeeh
Q 007862 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEE 334 (587)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 334 (587)
.++ ..+ +. . +..+.. .++. ...
T Consensus 197 --------------~~~---~~~--------~~------~--~~~~~~--------------------~~~~----~~~- 218 (417)
T 2cfq_A 197 --------------VAN---AVG--------AN------H--SAFSLK--------------------LALE----LFR- 218 (417)
T ss_dssp --------------SSS---SSS--------SC------C--CCCCHH--------------------HHHH----HTT-
T ss_pred --------------ccc---ccc--------cc------c--ccccHH--------------------HHHH----Hhc-
Confidence 000 000 00 0 000000 0000 000
Q ss_pred hhhhhhhhHHHHHHHHHHhhhccc-cceeeeeeccccc-cCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhc
Q 007862 335 VKCLIKIIPIWAAGIISLTSISQQ-GTFTVSQAMKMNR-HLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITK 412 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~ 412 (587)
.+.++............+..+.+. +.++. . ..+. ..+ ....+....++.+..++...+..++ .||++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g- 287 (417)
T 2cfq_A 219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFT-S--FFATGEQG---TRVFGYVTTMGELLNASIMFFAPLI----INRIG- 287 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--TSSSHHHH---THHHHHHHHHHHHHHHHHHHHHHHH----HHHHC-
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHH-H--HHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHH----HHHhc-
Confidence 011111111111111111112111 11111 0 0000 000 0001222333444444444544444 67763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhh
Q 007862 413 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 492 (587)
Q Consensus 413 r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~r 492 (587)
+++.+..+.++.+++++..... .+.+.++...++.+++.....+..+.+..|.+|++.|
T Consensus 288 ------~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 288 ------GKNALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3345556666666655444321 2334444455556666666677778899999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 493 SIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 493 g~~~gl-~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
|++.++ ++..+++|+.+++.+.+.+.+.. ++...|...+++.+++.+..++..++
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999998 47888899999999988776421 35567777777777777665544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-12 Score=134.25 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=149.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc--cchhhhhHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI--GRFKTITFASIAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 94 (587)
|.++......++....++++..+++.|+++.+|.+..+.+++.....++..++.+++|+++|| + |||+++.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456777778888888889999999999998899999999999999999999999999999999 8 9999998887776
Q ss_pred H-HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 95 I-LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 95 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
. + +.++..+.. ..+.+.+.+..++.|++.++..+....++.|.
T Consensus 331 ~~~------------~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (451)
T 1pw4_A 331 VTI------------ATIVYWMNP------------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374 (451)
T ss_dssp HHH------------HHHHTTSCC------------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHH------------HHHHHHHhc------------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 6 5 554443322 01456677778889999999999889999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+|+++ |+++++++....++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 375 ~~~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 375 APKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99754 99999999999999 99999999999999999999999888777776665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=128.25 Aligned_cols=169 Identities=13% Similarity=0.054 Sum_probs=136.1
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHH-HHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVY-LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|.++......++.....+++..+++.| +++.+|++..+++++..+..++..++.+++|+++|| +|||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 456666677777777888888999999 888889999999999999999999999999999999 699999999998888
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.++..+.. +... +....+.+++.+...|...++..|.+|
T Consensus 337 ~------------~~~~~~~~~--------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 337 A------------LCLISAFAG--------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG 377 (438)
T ss_dssp H------------HHHHHHHCC--------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG
T ss_pred H------------HHHHHHHcC--------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8 665555433 3333 334478889999999999999899888
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~ 233 (587)
++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|.+..+..++.++.
T Consensus 378 ~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 378 QD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp GG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred cc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 42 566666555 567999999999999999988 999999876655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-11 Score=126.91 Aligned_cols=166 Identities=7% Similarity=0.040 Sum_probs=122.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccc
Q 007862 27 TFERLATIGLLANFMVYLLKEYHM---NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVT 103 (587)
Q Consensus 27 ~~~~~~~~~~~~~~~~yl~~~~~~---s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~ 103 (587)
++....++.....++.|+.+.++. +....+.+..+..++..++.+++|+++|| +|||+++.++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~------- 301 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSV------- 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHH-------
Confidence 333344444445678888776653 24455677777777888899999999999 6999999988888777
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
+.++.++.. +...+++...+.+++.+...+....++.|.+|++.
T Consensus 302 -----~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----- 345 (417)
T 2cfq_A 302 -----RIIGSSFAT--------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF----- 345 (417)
T ss_dssp -----HHHHHTTCC--------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH-----
T ss_pred -----HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 654443322 34455666666777777777777889999999744
Q ss_pred chhhhhhHH-HHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 184 GINSFFNWY-YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 184 ~r~~~~~~~-~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
|++++++. ....++|..++|.++|++.+..|+...|.+.++..+++.++.+..
T Consensus 346 -~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 346 -SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp -HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 89998884 677789999999999999988899999988777777666655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=122.29 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhh-----HHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-----FASI 92 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~ 92 (587)
..+......++....+......++.|+.+.++.+..+.+++.....+...++.++.|+++|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34555556666667777788889999999899887888888999999999999999999999 69987766 7777
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.++..+...... .....+...+++..++.++|.+...|....++.|
T Consensus 363 ~~~~------------~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 413 (491)
T 4aps_A 363 FAGL------------SFLLMAIPGALYG-----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK 413 (491)
T ss_dssp HHHH------------HHTTTHHHHHHCC-----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHH------------HHHHHHHHHHhcC-----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7766 6555544321000 0011245667788889999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
.+|++. |+++.++++...++|..+++.+.+++.+. ++...|.+.++..+++.++.++..++
T Consensus 414 ~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 414 LAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred hCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999865 99999999999999999999999988764 67777877776666666555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=114.00 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=125.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.........++..+..+.......+++.+..+.+.........+..+...++.++++++.|| +|||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHH
Confidence 334444445555555555555566667788889998888888888888999999999999999 5999999998888777
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+.++...... ......++...+.......+..|....+.+|.+|+
T Consensus 355 ------------~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 355 ------------GMFSLGTAFYTQ---------------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp ------------HHHHHHHHHHTT---------------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred ------------HHHHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 655544322100 01222222222222222233456777899999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc------cchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS------VSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~------~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+. |+++.++.....++++.+++.+.+++.+. .++.+.|++.+++.+++.+..++..|
T Consensus 402 ~~------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 402 AI------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TT------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 66 99999999999999999998887776543 34556777777776666665555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-09 Score=110.71 Aligned_cols=164 Identities=9% Similarity=0.011 Sum_probs=127.4
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH-HHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA-AIL 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~~ 96 (587)
.++......++...++++...+++.|+++++|.+..+.+.+.....++..++.++.|+++|| +||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Confidence 44556666777777888888888889888899999999999999999999999999999999 5882 3334433 333
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+......... ...+.+.++...++.+++.+...|....+..|.+|
T Consensus 277 ------------~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p- 321 (375)
T 2gfp_A 277 ------------GLLMWIPDWF----------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP- 321 (375)
T ss_dssp ------------SSSSSHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-
T ss_pred ------------HHHHHHHhhh----------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 3332222110 01145667778888999999999999999999987
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 225 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~ 225 (587)
++ |+++++......++|..++|.+.+.+.+..+|...+.+..+
T Consensus 322 ~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 322 FL------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HH------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 33 99999999999999999999999999888788887776433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=86.12 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=93.6
Q ss_pred cccccchhhhhhhhhchhhhhHHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 383 TVGVISMITIGLWLPFYDTVLVPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 383 ~~~~i~~i~~~l~~~l~~~l~~~l~~r~-~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
.+.....++..+..++.+++ .||+ ++ ++.+..+.++.+++.+..... ..+.+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l----~dr~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 112 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWI----ADRFFGK-------YNTILWLSLIYCVGHAFLAIF--------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHH----HTTSSCS-------HHHHHHHHHHHHHHHHHHHHT--------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhcc-------hHHHHHHHHHHHHHHHHHHHh--------------cccHHHH
Confidence 33444555555555554444 6665 43 356677777777777666543 1156677
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcc
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL---LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 538 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~ 538 (587)
....++.+++.+...+...++..+.+|++.|++.++. .+....+|..+++.+.+.+.+.. +
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g 176 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------G 176 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------C
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------c
Confidence 7788999999999999999999999999999877766 88888889999888777665321 2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007862 539 LDYFYFLIAGLGGLNIVYFL 558 (587)
Q Consensus 539 ~~~~f~~~~~~~~l~~v~~~ 558 (587)
+...|++.+++.+++.+.++
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.1 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.9e-26 Score=242.74 Aligned_cols=176 Identities=16% Similarity=0.053 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHhhh---hHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 20 PYILGNETFERLATIG---LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|.++...++-....|. ......++++ |+|+|.++.+++.+++.++..++++++|+++|| +|||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 4444444443333332 3445556765 689999999999999999999999999999999 5999999999999988
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.++.+++....+ +...+++.|++.|++.|...++...+++|.+|+
T Consensus 102 ------------~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 147 (447)
T d1pw4a_ 102 ------------VMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 147 (447)
T ss_dssp ------------HHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT
T ss_pred ------------HHhhccccchhhh----------------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence 7777666542111 567799999999999999999999999999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc-cchhhHHHHHHHHHHHHHHHHHhc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~-~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
++ |++++++.....++|..+++.+++.+.+. .+||+.|++..+..++..++.+..
T Consensus 148 ~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 148 KE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp TH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 55 99999999999999999999988876654 579999998777666555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.3e-23 Score=210.26 Aligned_cols=397 Identities=11% Similarity=-0.016 Sum_probs=231.4
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
|..|.+....++..+++....+.++.|+++++|.|.++.|++.+++.++..++++++|+++|| +||||+++++.++..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 356677777777778877788899999999999999999999999999999999999999999 5999999999988888
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.....+....+ ......+..+.+.+.+.+...+.......+..++
T Consensus 86 ------------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (417)
T d1pv7a_ 86 ------------MFAPFFIFIFGP----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131 (417)
T ss_dssp ------------THHHHHHHTHHH----------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH
T ss_pred ------------HHHHHHHhhhhh----------------------hHHHHHHHHHHHhhhcccccccchhhcccccccc
Confidence 666555543100 0112234444455555554444444433333332
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQ 256 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
. .+++....+........+..+++.+++.+.+. +|+..+.+......+..++.++..++....+++++..
T Consensus 132 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 201 (417)
T d1pv7a_ 132 V----SRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----- 201 (417)
T ss_dssp H----HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH-----
T ss_pred h----hhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh-----
Confidence 1 13456667777778889999999999988765 4555555444444333333333332211111110000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
+ +. .+ . . ...+... ... .+
T Consensus 202 -------~-~~--~~----~--------------------~--~~~~~~~------------------------~~~-~~ 220 (417)
T d1pv7a_ 202 -------G-AN--HS----A--------------------F--SLKLALE------------------------LFR-QP 220 (417)
T ss_dssp -------H-SC--CC----C--------------------C--CHHHHHH------------------------HTT-SS
T ss_pred -------h-hh--cc----c--------------------c--ccccccc------------------------ccc-cc
Confidence 0 00 00 0 0 0000000 000 00
Q ss_pred hhhhhhH-HHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCC
Q 007862 337 CLIKIIP-IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 415 (587)
Q Consensus 337 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~ 415 (587)
....... ...................... ..+...+ ............+...+...+.++ +.+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~----- 286 (417)
T d1pv7a_ 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQG---TRVFGYVTTMGELLNASIMFFAPL----IINRI----- 286 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHH---HHHHHHHHHHHHHHHHHHHTTHHH----HHHHH-----
T ss_pred cccchhhhhHHHHHHHHhhhcccccccccc--ccccccc---hhhhcccccccccccccchhhhhh----hhccc-----
Confidence 0000000 0111111111100000000000 0000000 000111222233333344443333 35655
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHH
Q 007862 416 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 495 (587)
Q Consensus 416 ~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~ 495 (587)
.+++.+..+.++.+++.+..... .+.+.+....++.+++.+...+...++..+.+|++.|+++
T Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
T d1pv7a_ 287 --GGKNALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred --ccccchhhhHHHHHHhhhccccc---------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence 44566777777777776666532 4566677778889999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007862 496 NSLL-FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 566 (587)
Q Consensus 496 ~gl~-~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~ 566 (587)
.|+. ++.+.+|..+++.+.+.+.+.. ++...|++.+++.++..++..++.++.+.
T Consensus 350 ~~~~~~~~~~~g~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 350 YLVCFCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9975 5677899999999988887543 45667888888888888777777655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=3.1e-11 Score=125.00 Aligned_cols=179 Identities=15% Similarity=0.047 Sum_probs=137.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
.|.++......++.....++...+++.|+.+.++.+..+.++...+..+...++.+++|+++|| ++|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence 3556677777788888889999999999999999999999999999999999999999999999 598764443333222
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+. +.+....... ...+....++..++.|++.++..+....+..|.+|
T Consensus 327 ~~---------~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 373 (447)
T d1pw4a_ 327 LV---------TIATIVYWMN------------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 373 (447)
T ss_dssp HH---------HHHHHHTTSC------------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred HH---------HHHHHHHHhc------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 20 0011111111 11255667777788899999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 234 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~ 234 (587)
++. |+++.++.+...++ |..++|.+.+++.+..||+..|.+..+..++++++.
T Consensus 374 ~~~------~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 374 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp TTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 754 99999999888877 557789999999999999999887766665555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=9.9e-12 Score=125.65 Aligned_cols=145 Identities=7% Similarity=0.072 Sum_probs=121.2
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCC
Q 007862 47 EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPK 126 (587)
Q Consensus 47 ~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 126 (587)
+.+.+....+.......++..++..+.+++.|| +|||+++.++.++..+ +.+...+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~------------~~~~~~~~~--------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSV------------RIIGSSFAT--------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHH------------HHHHHHTCC---------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHH------------hhhcccccc---------
Confidence 345566777888888889999999999999999 5999999999998888 766666544
Q ss_pred CCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhhhhhHHH-HHHHHHHHHHhh
Q 007862 127 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVILITQT 205 (587)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~ 205 (587)
+.+.+++..++.|++.+...+...+++.|.+|++. |++.++..+ ....+|..++|.
T Consensus 311 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~ 367 (417)
T d1pv7a_ 311 -----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHH
T ss_pred -----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888889999999999999999999999855 999999865 456799999999
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 206 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 206 ~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+.|++.|..||+..|++.+++.++..++..+
T Consensus 368 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877766665555433
|